Resource Type:
Polypeptide
Name:
XM_017362266.1
Identifier:
XM_017362266.1-protein
Sequence:
MTLMVKLAFVVTLLVISIDGYNCKVVQFIFGDSLSDVGNNDRLSRSLAKA
NLPWYGIDFGNGTPNGRFTNGRTVSDIIGDKMGLPRPPAFLDPSLTEDVI
LENGVNFASGGGGILNETGGLFIQRFSLYKQIELFQGTQELMKAKLGTAA
AEKFFQESQYVVALGSNDFINNYLMPIYRDSWTYNDEGFIDYLMETLGAQ
LKVLHTLGARQLMVFGLGPMGCIPLQRVLSISGNGECQEKTNNLALAFNK
AASNLLENLSKSLPNATYRFGDGYDVVNNVIKNPKKYGFDNSDSPCCSFG
RIRPALTCVPASTLCKDRSKYLFWDEYHPSDSANELIADEIIKKLGFKRV
NENNGPSPAPADAPSTT
Sequence Length:
367
Sequence Checksum:
b8873ed3c9555145ee26ac445e3f278f
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017362266.1, derives from mRNA, XM_017362266.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017362266.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017362266.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A314YU43 ((GDSL esterase/lipase {ECO:0000313|EMBL:PQQ10213.1}))
HSP 1 Score: 614.764 bits (1584), Expect = 0.000e+0
Identity = 291/366 (79.51%), Postives = 327/366 (89.34%), Query Frame = 0
Match: A0A314YU43 ((GDSL esterase/lipase {ECO:0000313|EMBL:PQQ10213.1}))
HSP 1 Score: 614.764 bits (1584), Expect = 0.000e+0
Identity = 291/366 (79.51%), Postives = 327/366 (89.34%), Query Frame = 0
Query: 1 MTLMVKLAFV-VTLLVISIDGYNCKVVQFIFGDSLSDVGNNDRLSRSLAKANLPWYGIDFGNGTPNGRFTNGRTVSDIIGDKMGLPRPPAFLDPSLTEDVILENGVNFASGGGGILNETGGLFIQRFSLYKQIELFQGTQELMKAKLGTAAAEKFFQESQYVVALGSNDFINNYLMPIYRDSWTYNDEGFIDYLMETLGAQLKVLHTLGARQLMVFGLGPMGCIPLQRVLSISGNGECQEKTNNLALAFNKAASNLLENLSKSLPNATYRFGDGYDVVNNVIKNPKKYGFDNSDSPCCSFGRIRPALTCVPASTLCKDRSKYLFWDEYHPSDSANELIADEIIKKLGFKRVNENNGPSPAPADAPS 365
M MV L + VT+ + IDG+NCK+VQFIFGDSLSDVGNN LS+SLA+A+LPWYGIDFGNG PNGRF+NGRTV+DIIGD MGL RPPAFLDPSLTED+I+ENGVN+ASGGGGILNETGGLFIQRFSLYKQIELF+GTQ L+K+K+G AAEKFFQE++YVVALGSNDFINNYLMP+YRDSWTYND+ FIDYLMETL QLK+LH+LGARQLMVFGLGPMGCIPLQRVLS S G+CQ++TN LAL+FNKA S L E+LS LPNA+YRFGD YDVVN+VI NP KYGF N+++PCCSFGRIRPALTC+PAS LCKDRSKY+FWDEYHPSDSANELIA E+IKKLGF RV E NGPSPAPA APS
Sbjct: 1 MKFMVALTMMAVTIFGLLIDGHNCKIVQFIFGDSLSDVGNNKYLSKSLAQASLPWYGIDFGNGLPNGRFSNGRTVADIIGDNMGLSRPPAFLDPSLTEDMIIENGVNYASGGGGILNETGGLFIQRFSLYKQIELFEGTQTLIKSKIGAQAAEKFFQEARYVVALGSNDFINNYLMPVYRDSWTYNDQTFIDYLMETLQRQLKLLHSLGARQLMVFGLGPMGCIPLQRVLSTS--GDCQDRTNKLALSFNKAGSKLTEDLSSKLPNASYRFGDAYDVVNDVISNPDKYGFSNAETPCCSFGRIRPALTCIPASVLCKDRSKYVFWDEYHPSDSANELIARELIKKLGFLRVGETNGPSPAPAIAPS 364
BLAST of XM_017362266.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A314XQ46 ((GDSL esterase/lipase {ECO:0000313|EMBL:PQP93117.1}))
HSP 1 Score: 612.453 bits (1578), Expect = 0.000e+0
Identity = 288/366 (78.69%), Postives = 327/366 (89.34%), Query Frame = 0
Match: A0A314XQ46 ((GDSL esterase/lipase {ECO:0000313|EMBL:PQP93117.1}))
HSP 1 Score: 612.453 bits (1578), Expect = 0.000e+0
Identity = 288/366 (78.69%), Postives = 327/366 (89.34%), Query Frame = 0
Query: 1 MTLMVKLAFV-VTLLVISIDGYNCKVVQFIFGDSLSDVGNNDRLSRSLAKANLPWYGIDFGNGTPNGRFTNGRTVSDIIGDKMGLPRPPAFLDPSLTEDVILENGVNFASGGGGILNETGGLFIQRFSLYKQIELFQGTQELMKAKLGTAAAEKFFQESQYVVALGSNDFINNYLMPIYRDSWTYNDEGFIDYLMETLGAQLKVLHTLGARQLMVFGLGPMGCIPLQRVLSISGNGECQEKTNNLALAFNKAASNLLENLSKSLPNATYRFGDGYDVVNNVIKNPKKYGFDNSDSPCCSFGRIRPALTCVPASTLCKDRSKYLFWDEYHPSDSANELIADEIIKKLGFKRVNENNGPSPAPADAPS 365
M MV L + VT+ + IDG+NCK+VQFIFGDSLSDVGNN LS+SLA+A+LPWYGIDFGNG PNGRF+NGRTV+DIIGD MGL RPPAFLDPSLTED+ILENGVN+ASGGGGILNETGG FIQR SLY+QIELF+GTQ L+K+K+G AAEKFFQE++YVVALGSNDFINNYLMP+YRDSWTYND+ FIDYLMETL QLK+LH+LGARQLMVFGLGPMGCIPLQRVLS S G+CQ++TN LAL+FNKA S L+E+LS LPNA+Y+FGD YDVVN+VI NP KYGF N+++PCCSFGRIRPALTC+PAS LCKDRSKY+FWDEYHPSDSANELIA E+IKKLGF RV+E NGPSPAPA APS
Sbjct: 1 MKFMVALTMMAVTIFGLLIDGHNCKIVQFIFGDSLSDVGNNKYLSKSLAQASLPWYGIDFGNGLPNGRFSNGRTVADIIGDNMGLSRPPAFLDPSLTEDIILENGVNYASGGGGILNETGGYFIQRLSLYRQIELFEGTQTLIKSKIGAQAAEKFFQEARYVVALGSNDFINNYLMPVYRDSWTYNDQTFIDYLMETLQRQLKLLHSLGARQLMVFGLGPMGCIPLQRVLSTS--GDCQDRTNKLALSFNKAGSKLMEDLSSKLPNASYKFGDAYDVVNDVISNPDKYGFSNAETPCCSFGRIRPALTCIPASVLCKDRSKYVFWDEYHPSDSANELIARELIKKLGFLRVDETNGPSPAPAIAPS 364
BLAST of XM_017362266.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P5T2J6 ((GDSL esterase/lipase At1g74460 {ECO:0000313|RefSeq:XP_021820673.1}))
HSP 1 Score: 609.757 bits (1571), Expect = 0.000e+0
Identity = 289/366 (78.96%), Postives = 327/366 (89.34%), Query Frame = 0
Match: A0A6P5T2J6 ((GDSL esterase/lipase At1g74460 {ECO:0000313|RefSeq:XP_021820673.1}))
HSP 1 Score: 609.757 bits (1571), Expect = 0.000e+0
Identity = 289/366 (78.96%), Postives = 327/366 (89.34%), Query Frame = 0
Query: 1 MTLMVKLAFV-VTLLVISIDGYNCKVVQFIFGDSLSDVGNNDRLSRSLAKANLPWYGIDFGNGTPNGRFTNGRTVSDIIGDKMGLPRPPAFLDPSLTEDVILENGVNFASGGGGILNETGGLFIQRFSLYKQIELFQGTQELMKAKLGTAAAEKFFQESQYVVALGSNDFINNYLMPIYRDSWTYNDEGFIDYLMETLGAQLKVLHTLGARQLMVFGLGPMGCIPLQRVLSISGNGECQEKTNNLALAFNKAASNLLENLSKSLPNATYRFGDGYDVVNNVIKNPKKYGFDNSDSPCCSFGRIRPALTCVPASTLCKDRSKYLFWDEYHPSDSANELIADEIIKKLGFKRVNENNGPSPAPADAPS 365
M MV L + +T+ + IDG+NCK+VQFIFGDSLSDVGNN LS+SLA+A+LPWYGIDFGNG PNGRF+NGRTV+DIIGD MGL RPPAFLDPSLTED+ILENGVN+ASGGGGILNETGGLFIQRFSLYKQIELF+GTQ L+K+K+G AA+KFFQE++YVVALGSNDFINNYLMP+Y DSWTYND+ FIDYLMETL QL++LH+LGARQLMVFGLGPMGCIPLQRVLS SGN CQ++TN LAL+FNKA S L+E+LS LPNA+YRFGD YDVVNNVI NP +YGF N+D+PCCSFGRIRPALTC+PAS LCKDRSKY+FWDEYHPSDSANELIA E+IKK GF RV+E NGPSPAPA APS
Sbjct: 1 MKFMVALTMMAMTIFGLLIDGHNCKIVQFIFGDSLSDVGNNKYLSKSLAQASLPWYGIDFGNGLPNGRFSNGRTVADIIGDNMGLSRPPAFLDPSLTEDIILENGVNYASGGGGILNETGGLFIQRFSLYKQIELFEGTQTLIKSKIGAQAAQKFFQEARYVVALGSNDFINNYLMPVYSDSWTYNDQTFIDYLMETLQRQLQLLHSLGARQLMVFGLGPMGCIPLQRVLSTSGN--CQDRTNKLALSFNKAGSKLMEDLSSKLPNASYRFGDAYDVVNNVISNPDQYGFSNADTPCCSFGRIRPALTCIPASVLCKDRSKYVFWDEYHPSDSANELIARELIKKFGFLRVDE-NGPSPAPAIAPS 363
BLAST of XM_017362266.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251PAT6 ((Uncharacterized protein {ECO:0000313|EMBL:ONI08692.1}))
HSP 1 Score: 609.372 bits (1570), Expect = 0.000e+0
Identity = 288/365 (78.90%), Postives = 323/365 (88.49%), Query Frame = 0
Match: A0A251PAT6 ((Uncharacterized protein {ECO:0000313|EMBL:ONI08692.1}))
HSP 1 Score: 609.372 bits (1570), Expect = 0.000e+0
Identity = 288/365 (78.90%), Postives = 323/365 (88.49%), Query Frame = 0
Query: 1 MTLMVKLAFVVTLLVISIDGYNCKVVQFIFGDSLSDVGNNDRLSRSLAKANLPWYGIDFGNGTPNGRFTNGRTVSDIIGDKMGLPRPPAFLDPSLTEDVILENGVNFASGGGGILNETGGLFIQRFSLYKQIELFQGTQELMKAKLGTAAAEKFFQESQYVVALGSNDFINNYLMPIYRDSWTYNDEGFIDYLMETLGAQLKVLHTLGARQLMVFGLGPMGCIPLQRVLSISGNGECQEKTNNLALAFNKAASNLLENLSKSLPNATYRFGDGYDVVNNVIKNPKKYGFDNSDSPCCSFGRIRPALTCVPASTLCKDRSKYLFWDEYHPSDSANELIADEIIKKLGFKRVNENNGPSPAPADAPS 365
M +MV L VT+ + IDG+NCK+VQFIFGDSLSDVGNN LS+SLA+A+LPWYGIDFGNG PNGRF+NGRTV+DIIGD MGL RPPAFLDPSLTED ILENGVN+ASGGGGILNETGG FIQRFSLYKQIELF+GTQ L+K+K+G AAEKFF E++YVVALGSNDFINNYLMP+Y DSWTYND+ FIDY+METL QLK+LH+LGARQLMVFGLGPMGCIPLQRVLS S G+CQ++TN LAL+FNKA S LLE+LS LPNA+YRFGD YDVVN+VI NP KYGF N+D+PCCSFGRIRPALTC+PAS LCKDRSKY+FWDEYHPSD ANELIA E+IKK GF RV+E NGPSPAPA APS
Sbjct: 1 MKVMVAL-MAVTIFGLLIDGHNCKIVQFIFGDSLSDVGNNKYLSKSLAQASLPWYGIDFGNGLPNGRFSNGRTVADIIGDNMGLSRPPAFLDPSLTEDKILENGVNYASGGGGILNETGGYFIQRFSLYKQIELFEGTQTLIKSKIGAQAAEKFFHEARYVVALGSNDFINNYLMPVYSDSWTYNDQTFIDYIMETLQTQLKLLHSLGARQLMVFGLGPMGCIPLQRVLSTS--GDCQDRTNKLALSFNKAGSKLLEDLSSKLPNASYRFGDAYDVVNDVISNPDKYGFSNADTPCCSFGRIRPALTCIPASVLCKDRSKYVFWDEYHPSDGANELIARELIKKFGFSRVDETNGPSPAPAIAPS 362
BLAST of XM_017362266.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M5WB16 ((Uncharacterized protein {ECO:0000313|EMBL:EMJ10491.1}))
HSP 1 Score: 605.905 bits (1561), Expect = 0.000e+0
Identity = 284/356 (79.78%), Postives = 318/356 (89.33%), Query Frame = 0
Match: M5WB16 ((Uncharacterized protein {ECO:0000313|EMBL:EMJ10491.1}))
HSP 1 Score: 605.905 bits (1561), Expect = 0.000e+0
Identity = 284/356 (79.78%), Postives = 318/356 (89.33%), Query Frame = 0
Query: 10 VVTLLVISIDGYNCKVVQFIFGDSLSDVGNNDRLSRSLAKANLPWYGIDFGNGTPNGRFTNGRTVSDIIGDKMGLPRPPAFLDPSLTEDVILENGVNFASGGGGILNETGGLFIQRFSLYKQIELFQGTQELMKAKLGTAAAEKFFQESQYVVALGSNDFINNYLMPIYRDSWTYNDEGFIDYLMETLGAQLKVLHTLGARQLMVFGLGPMGCIPLQRVLSISGNGECQEKTNNLALAFNKAASNLLENLSKSLPNATYRFGDGYDVVNNVIKNPKKYGFDNSDSPCCSFGRIRPALTCVPASTLCKDRSKYLFWDEYHPSDSANELIADEIIKKLGFKRVNENNGPSPAPADAPS 365
VT+ + IDG+NCK+VQFIFGDSLSDVGNN LS+SLA+A+LPWYGIDFGNG PNGRF+NGRTV+DIIGD MGL RPPAFLDPSLTED ILENGVN+ASGGGGILNETGG FIQRFSLYKQIELF+GTQ L+K+K+G AAEKFF E++YVVALGSNDFINNYLMP+Y DSWTYND+ FIDY+METL QLK+LH+LGARQLMVFGLGPMGCIPLQRVLS S G+CQ++TN LAL+FNKA S LLE+LS LPNA+YRFGD YDVVN+VI NP KYGF N+D+PCCSFGRIRPALTC+PAS LCKDRSKY+FWDEYHPSD ANELIA E+IKK GF RV+E NGPSPAPA APS
Sbjct: 2 AVTIFGLLIDGHNCKIVQFIFGDSLSDVGNNKYLSKSLAQASLPWYGIDFGNGLPNGRFSNGRTVADIIGDNMGLSRPPAFLDPSLTEDKILENGVNYASGGGGILNETGGYFIQRFSLYKQIELFEGTQTLIKSKIGAQAAEKFFHEARYVVALGSNDFINNYLMPVYSDSWTYNDQTFIDYIMETLQTQLKLLHSLGARQLMVFGLGPMGCIPLQRVLSTS--GDCQDRTNKLALSFNKAGSKLLEDLSSKLPNASYRFGDAYDVVNDVISNPDKYGFSNADTPCCSFGRIRPALTCIPASVLCKDRSKYVFWDEYHPSDGANELIARELIKKFGFSRVDETNGPSPAPAIAPS 355
BLAST of XM_017362266.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5E4FR32 ((Full=PREDICTED: GDSL {ECO:0000313|EMBL:VVA29918.1}))
HSP 1 Score: 605.905 bits (1561), Expect = 0.000e+0
Identity = 285/366 (77.87%), Postives = 321/366 (87.70%), Query Frame = 0
Match: A0A5E4FR32 ((Full=PREDICTED: GDSL {ECO:0000313|EMBL:VVA29918.1}))
HSP 1 Score: 605.905 bits (1561), Expect = 0.000e+0
Identity = 285/366 (77.87%), Postives = 321/366 (87.70%), Query Frame = 0
Query: 1 MTLMVKLAFV-VTLLVISIDGYNCKVVQFIFGDSLSDVGNNDRLSRSLAKANLPWYGIDFGNGTPNGRFTNGRTVSDIIGDKMGLPRPPAFLDPSLTEDVILENGVNFASGGGGILNETGGLFIQRFSLYKQIELFQGTQELMKAKLGTAAAEKFFQESQYVVALGSNDFINNYLMPIYRDSWTYNDEGFIDYLMETLGAQLKVLHTLGARQLMVFGLGPMGCIPLQRVLSISGNGECQEKTNNLALAFNKAASNLLENLSKSLPNATYRFGDGYDVVNNVIKNPKKYGFDNSDSPCCSFGRIRPALTCVPASTLCKDRSKYLFWDEYHPSDSANELIADEIIKKLGFKRVNENNGPSPAPADAPS 365
M MV L + VT+ + IDG+NCK+VQFIFGDSLSDVGNN LS+SLA+A+LPWYGIDFGNG PNGRF+NGRTV+DIIGD MGL RPPAFLDPSLTED ILENGVN+ASGGGGILNETGG FIQRFSLYKQIELF+GTQ L+K+K+G AAEKFF E++YVVALGSNDFINNYLMP+Y DSWTYND+ F+DY+METL QLK+LH LGARQLMVFGLGPMGCIPLQRVLS S G+CQ++TN LAL+FNKA S LLE+LS LPNA++RFGD YDVVN+VI NP KYGF N+D+PCCSFGRIRPALTC+PAS LCKDRSKY+FWDEYHPSD ANELIA E+IKK GF RV+E NGPSPAP APS
Sbjct: 1 MKFMVALTMMAVTIFGLLIDGHNCKIVQFIFGDSLSDVGNNKYLSKSLAQASLPWYGIDFGNGLPNGRFSNGRTVADIIGDNMGLSRPPAFLDPSLTEDTILENGVNYASGGGGILNETGGYFIQRFSLYKQIELFEGTQTLIKSKIGAQAAEKFFHEARYVVALGSNDFINNYLMPVYSDSWTYNDQTFVDYIMETLQTQLKLLHGLGARQLMVFGLGPMGCIPLQRVLSTS--GDCQDRTNKLALSFNKAGSKLLEDLSSKLPNASFRFGDAYDVVNDVISNPDKYGFSNADTPCCSFGRIRPALTCIPASVLCKDRSKYVFWDEYHPSDGANELIARELIKKFGFSRVDETNGPSPAPVIAPS 364
BLAST of XM_017362266.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J5UWD8 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4281016.1}))
HSP 1 Score: 603.979 bits (1556), Expect = 0.000e+0
Identity = 286/366 (78.14%), Postives = 321/366 (87.70%), Query Frame = 0
Match: A0A6J5UWD8 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4281016.1}))
HSP 1 Score: 603.979 bits (1556), Expect = 0.000e+0
Identity = 286/366 (78.14%), Postives = 321/366 (87.70%), Query Frame = 0
Query: 1 MTLMVKLAFV-VTLLVISIDGYNCKVVQFIFGDSLSDVGNNDRLSRSLAKANLPWYGIDFGNGTPNGRFTNGRTVSDIIGDKMGLPRPPAFLDPSLTEDVILENGVNFASGGGGILNETGGLFIQRFSLYKQIELFQGTQELMKAKLGTAAAEKFFQESQYVVALGSNDFINNYLMPIYRDSWTYNDEGFIDYLMETLGAQLKVLHTLGARQLMVFGLGPMGCIPLQRVLSISGNGECQEKTNNLALAFNKAASNLLENLSKSLPNATYRFGDGYDVVNNVIKNPKKYGFDNSDSPCCSFGRIRPALTCVPASTLCKDRSKYLFWDEYHPSDSANELIADEIIKKLGFKRVNENNGPSPAPADAPS 365
M MV L + VT+ + IDG+NCK+VQFIFGDSLSDVGNN LS+SLA+A+LPWYGIDFGNG PNGRF+NGRTV+DIIGD MGL RPPAFLDPSLTED+ILE GVN+ASGGGGILNETGG FIQRFSLYKQIELF+GTQ L+K+K+G AAEKFF E++YVVALGSNDFINNYLMP+Y DSW+YNDE FIDY+METL QLK+LH+ GARQLMVFGLGPMGCIPLQRVLS S G+CQ++TN LAL+FNKA LLE+LS LPNA+YRFGD YDVVN+VI NP KYGF N+D PCCSFGRIRPALTC+PAS LCKDRSKY+FWDEYHPSDSANELIA E+IKKLGF RV+ NGPSPAPA APS
Sbjct: 1 MKCMVALTMMAVTVFGLLIDGHNCKIVQFIFGDSLSDVGNNKYLSKSLAQASLPWYGIDFGNGLPNGRFSNGRTVADIIGDNMGLSRPPAFLDPSLTEDIILEKGVNYASGGGGILNETGGYFIQRFSLYKQIELFEGTQTLIKSKIGAQAAEKFFHEARYVVALGSNDFINNYLMPVYSDSWSYNDETFIDYIMETLERQLKLLHSFGARQLMVFGLGPMGCIPLQRVLSTS--GDCQDRTNKLALSFNKAGIKLLEDLSSKLPNASYRFGDAYDVVNDVISNPDKYGFSNADKPCCSFGRIRPALTCIPASVLCKDRSKYVFWDEYHPSDSANELIARELIKKLGFSRVDGTNGPSPAPAIAPS 364
BLAST of XM_017362266.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P6P2N9 ((Putative triacylglycerol lipase {ECO:0000313|EMBL:PRQ16190.1}) (3.1.1.3 {ECO:0000313|EMBL:PRQ16190.1}))
HSP 1 Score: 598.971 bits (1543), Expect = 0.000e+0
Identity = 282/366 (77.05%), Postives = 323/366 (88.25%), Query Frame = 0
Match: A0A2P6P2N9 ((Putative triacylglycerol lipase {ECO:0000313|EMBL:PRQ16190.1}) (3.1.1.3 {ECO:0000313|EMBL:PRQ16190.1}))
HSP 1 Score: 598.971 bits (1543), Expect = 0.000e+0
Identity = 282/366 (77.05%), Postives = 323/366 (88.25%), Query Frame = 0
Query: 1 MTLMVKLA-FVVTLLVISIDGYNCKVVQFIFGDSLSDVGNNDRLSRSLAKANLPWYGIDFGNGTPNGRFTNGRTVSDIIGDKMGLPRPPAFLDPSLTEDVILENGVNFASGGGGILNETGGLFIQRFSLYKQIELFQGTQELMKAKLGTAAAEKFFQESQYVVALGSNDFINNYLMPIYRDSWTYNDEGFIDYLMETLGAQLKVLHTLGARQLMVFGLGPMGCIPLQRVLSISGNGECQEKTNNLALAFNKAASNLLENLSKSLPNATYRFGDGYDVVNNVIKNPKKYGFDNSDSPCCSFGRIRPALTCVPASTLCKDRSKYLFWDEYHPSDSANELIADEIIKKLGFKRVNENNGPSPAPADAPS 365
M + V +A VVT+ I IDGY+CKVVQFIFGDSLSDVGNN L +SLA+A+LPWYGIDFGNG PNGRF+NGRTV+DIIGDKMGLPRPPA+LDPSLTED+ILENGVN+ASGGGGILNETG LFIQR SLYKQIELF+GTQ L+++K+G AA+KFFQ ++YVVALGSNDFINNYLMP+Y DSW YND+ FIDYLMETL AQL++LHTLGARQLMVFGLGPMGCIPLQRVLS S G+C ++ NNLAL+FNKA S L++NL+ LPN++YRFGD YDVVNN+I NP KYGF NSDSPCCSFG+IRPALTCVPAS LCKDRSKYLFWDEYHPSDSAN+ IA+E+IKK GF RV++ + PS APA APS
Sbjct: 1 MKIKVGVAMLVVTIFAILIDGYSCKVVQFIFGDSLSDVGNNKYLGKSLAQASLPWYGIDFGNGLPNGRFSNGRTVADIIGDKMGLPRPPAYLDPSLTEDMILENGVNYASGGGGILNETGALFIQRLSLYKQIELFEGTQTLIRSKIGKVAADKFFQGARYVVALGSNDFINNYLMPVYSDSWNYNDQSFIDYLMETLKAQLQLLHTLGARQLMVFGLGPMGCIPLQRVLSTS--GDCVDRANNLALSFNKAGSKLMDNLNAKLPNSSYRFGDAYDVVNNIIINPSKYGFSNSDSPCCSFGKIRPALTCVPASVLCKDRSKYLFWDEYHPSDSANQFIANELIKKFGFTRVDQGDAPSSAPAIAPS 364
BLAST of XM_017362266.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6S7N4M4 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4095857.1}))
HSP 1 Score: 595.89 bits (1535), Expect = 0.000e+0
Identity = 278/366 (75.96%), Postives = 318/366 (86.89%), Query Frame = 0
Match: A0A6S7N4M4 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4095857.1}))
HSP 1 Score: 595.89 bits (1535), Expect = 0.000e+0
Identity = 278/366 (75.96%), Postives = 318/366 (86.89%), Query Frame = 0
Query: 1 MTLMVKLAFVVT-LLVISIDGYNCKVVQFIFGDSLSDVGNNDRLSRSLAKANLPWYGIDFGNGTPNGRFTNGRTVSDIIGDKMGLPRPPAFLDPSLTEDVILENGVNFASGGGGILNETGGLFIQRFSLYKQIELFQGTQELMKAKLGTAAAEKFFQESQYVVALGSNDFINNYLMPIYRDSWTYNDEGFIDYLMETLGAQLKVLHTLGARQLMVFGLGPMGCIPLQRVLSISGNGECQEKTNNLALAFNKAASNLLENLSKSLPNATYRFGDGYDVVNNVIKNPKKYGFDNSDSPCCSFGRIRPALTCVPASTLCKDRSKYLFWDEYHPSDSANELIADEIIKKLGFKRVNENNGPSPAPADAPS 365
M L V + V+T +L I GY+CK+VQFIFGDSLSD GNN+RL++S A+A LPWYGID+G+G PNGRFTNGRTVSDIIGDK+GLPRPPAFLDPSL+EDVIL NGVNFASGGGGILNETGGLFIQRFS+YKQIELF+G Q L++ +G A KFFQE++YVVALGSNDFINNYLMP+Y DSWTYND+ F+DYLMETLG QL VLH +G R+LMVFGLGPMGCIPLQRVLS SG CQEKTN LAL+FNKA + L+++LS LPNA+Y+FGD YDVVNN+I NP KYGFDN+DSPCCSFGRIRPALTCVPAS LCKDRSKYLFWDEYHPSD ANE+IADE+I+KLGFK VN+ NG SP+P AP+
Sbjct: 1 MKLTVAMTVVLTTVLSCFIHGYDCKIVQFIFGDSLSDNGNNNRLTKSFAQAALPWYGIDYGSGMPNGRFTNGRTVSDIIGDKIGLPRPPAFLDPSLSEDVILANGVNFASGGGGILNETGGLFIQRFSMYKQIELFRGVQTLIRGSIGDKEATKFFQEAKYVVALGSNDFINNYLMPVYADSWTYNDDTFVDYLMETLGEQLTVLHGMGVRELMVFGLGPMGCIPLQRVLSTSGG--CQEKTNTLALSFNKATAKLMDDLSAKLPNASYKFGDAYDVVNNIITNPSKYGFDNADSPCCSFGRIRPALTCVPASRLCKDRSKYLFWDEYHPSDHANEMIADELIRKLGFKTVNQTNGASPSPTSAPA 364
BLAST of XM_017362266.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: D7SIA6 ((Uncharacterized protein {ECO:0000313|EMBL:CBI15216.3}))
HSP 1 Score: 595.504 bits (1534), Expect = 0.000e+0
Identity = 285/367 (77.66%), Postives = 324/367 (88.28%), Query Frame = 0
Match: D7SIA6 ((Uncharacterized protein {ECO:0000313|EMBL:CBI15216.3}))
HSP 1 Score: 595.504 bits (1534), Expect = 0.000e+0
Identity = 285/367 (77.66%), Postives = 324/367 (88.28%), Query Frame = 0
Query: 1 MTLMVKLAFVVT-LLVISIDGYNCKVVQFIFGDSLSDVGNNDRLSRSLAKANLPWYGIDFGNGTPNGRFTNGRTVSDIIGDKMGLPRPPAFLDPSLTEDVILENGVNFASGGGGILNETGGLFIQRFSLYKQIELFQGTQELMKAKLGTAAAEKFFQESQYVVALGSNDFINNYLMPIYRDSWTYNDEGFIDYLMETLGAQLKVLHTLGARQLMVFGLGPMGCIPLQRVLSISGNGECQEKTNNLALAFNKAASNLLENLSKSLPNATYRFGDGYDVVNNVIKNPKKYGFDNSDSPCCSFGRIRPALTCVPASTLCKDRSKYLFWDEYHPSDSANELIADEIIKKLGFKRVNENNGPSPAP-ADAPS 365
M L V +VT LL +++DGY+CKVVQFIFGDSLSDVGNNDRLS+SLA+A+LPWYGIDFGNG PNGRF NGRTV+DIIGD+ GLPRPPAFLDPSLTED+ILENGVN+ASGGGGILNETG LFIQRFSLYKQI LFQGTQEL+KAK+G AAE FFQ+S+YVVALGSNDFINNYL+P+Y D W Y+DEGFI+YLMETL AQL +LH LGAR+LMVFGLGPMGCIPLQRVLS S GECQ+KTN LAL+FN+A S +L+ LS +LPNA+++FGD YDVV+ VI NP+KYGF+NSDSPCCSFG+IRPALTCVPAS LC+DRSKY+FWDEYHPSDSANELIA E+I+K GF VNE N PSP P DAPS
Sbjct: 1 MKLTVAWTIMVTTLLGVAMDGYDCKVVQFIFGDSLSDVGNNDRLSKSLAQASLPWYGIDFGNGLPNGRFCNGRTVADIIGDRTGLPRPPAFLDPSLTEDMILENGVNYASGGGGILNETGSLFIQRFSLYKQIGLFQGTQELIKAKIGKEAAENFFQKSRYVVALGSNDFINNYLLPVYNDGWKYSDEGFINYLMETLKAQLTILHGLGARELMVFGLGPMGCIPLQRVLSTS--GECQDKTNKLALSFNQAGSKMLKELSGNLPNASFKFGDAYDVVDAVITNPQKYGFNNSDSPCCSFGKIRPALTCVPASILCEDRSKYVFWDEYHPSDSANELIATELIRKFGFLPVNETNAPSPGPTVDAPS 365
| Match Name | Stats | Description |
|---|---|---|
| A0A314YU43 | E-Value: 0.000e+0, PID: 79.51 | (GDSL esterase/lipase {ECO:0000313|EMBL:PQQ10213.1... [more] |
| A0A314XQ46 | E-Value: 0.000e+0, PID: 78.69 | (GDSL esterase/lipase {ECO:0000313|EMBL:PQP93117.1... [more] |
| A0A6P5T2J6 | E-Value: 0.000e+0, PID: 78.96 | (GDSL esterase/lipase At1g74460 {ECO:0000313|RefSe... [more] |
| A0A251PAT6 | E-Value: 0.000e+0, PID: 78.90 | (Uncharacterized protein {ECO:0000313|EMBL:ONI0869... [more] |
| M5WB16 | E-Value: 0.000e+0, PID: 79.78 | (Uncharacterized protein {ECO:0000313|EMBL:EMJ1049... [more] |
| A0A5E4FR32 | E-Value: 0.000e+0, PID: 77.87 | (Full=PREDICTED: GDSL {ECO:0000313|EMBL:VVA29918.1... [more] |
| A0A6J5UWD8 | E-Value: 0.000e+0, PID: 78.14 | (Uncharacterized protein {ECO:0000313|EMBL:CAB4281... [more] |
| A0A2P6P2N9 | E-Value: 0.000e+0, PID: 77.05 | (Putative triacylglycerol lipase {ECO:0000313|EMBL... [more] |
| A0A6S7N4M4 | E-Value: 0.000e+0, PID: 75.96 | (Uncharacterized protein {ECO:0000313|EMBL:CAB4095... [more] |
| D7SIA6 | E-Value: 0.000e+0, PID: 77.66 | (Uncharacterized protein {ECO:0000313|EMBL:CBI1521... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |