XM_017363376.1

Resource Type: 
Polypeptide
Name: 
XM_017363376.1
Identifier: 
XM_017363376.1-protein
Sequence: 
MGVESFAVRVSPERAQPGSKKHKTVSLPEELIQEEILPRLPITSLVRFKL
VCKSWRCLFSDPRFVKQHNNYQNPDDNDCLVVHKSNHIAILSRYGEKFVL
RSYGYRLIGSANGLVCIRSGEVLSIWNPATRQSMEFHLPPLGYGCLKRVG
FGFDHVSNDYKVAICYNSLEFLRVFYAVYSCRSGTWTYHEFDHHDYEIII
SKFEDSFTPTTMVKDSPYWTCSTIVSSRKDKINLSLVALKFDATSNEFKL
LPDFSSDFSCEKTFKVLNMKGLLSFMAYELCPVRKLEVYSLDEENGCGGG
VWSKMYCFGPFEEFRRFRLLQQGFKNGDEIVIYDNAEIYRYNHKMGTFEC
IPSTAPRFILDCFTHTPSLVSLQGMTSIYSKNQTPPVGQHSTTPLRLIDS
LRDHLPF
Sequence Length: 
407
Sequence Checksum: 
c7db1d17e3c8d9924e0245bbe9817f3e
View location in JBrowse: 
DCARv2_Chr7:33190528..33191751-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017363376.1, derives from mRNA, XM_017363376.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017363376.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017363376.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6L5BB42 (F-box domain-containing protein {ECO:0000259|SMART:SM00256})

HSP 1 Score: 167.548 bits (423), Expect = 5.658e-45
Identity = 122/393 (31.04%), Postives = 190/393 (48.35%), Query Frame = 0
 
Query:   22 HKTVSLPEELIQEEILPRLPITSLVRFKLVCKSWRCLFSDPRFVKQH-NNYQNPDD--NDCLVVHKSNHIAILSRYGEKF-------VLRSYGYRLIGSANGLVCIRSGEVLSIWNPATRQSMEF-----HLPPLGYGCLKR----VGFGFDHVSNDYKVAICYNSLEFLRVFYAVYSCRSGTWTYHEFDHHDYEIIISKFE------------DSFTPTTMVKDSPYWTCSTIVSSRKDKINLSLVALKFDATSNEFKLLPDFSSDFSCEKTFKVLNMKGLLSFMAYEL-CPVRKLEVYSLDEENGCGGGVWSKMYCFGPFEEFRRFRLLQQGFKNGDEIVIYDNAEIYRYNHKMGTFECIPSTAPRF-ILDCFTHTPSLVSLQGMTSIYSK 381
             +T  LPEE++ EEIL RLP+  L+R + VCKSW  LF  P FV+ H  N  N +    DCLV  KS   ++LSRY E         V      RL+GS NGL+C+       +WNP   +   F     ++P +      R    +GF +D + N+Y+V +CY    F +    VYS  S +WT         ++++ KF             +  TPTT+V + PYW  S  +   + K       +KF+  + +F+ LP+        + +   N K  L+ M Y    P   +E+Y L E++    GVW+K++  G  +       L QGFK GDEIVI    +++ Y+ +    +    ++ +  +L+CF++T S V L+GM  + S+
Sbjct:   31 RRTTELPEEIMNEEILVRLPVEDLLRVRCVCKSWESLFFTPNFVQAHFRNTLNKNSVYRDCLVARKSFGFSLLSRYKETMIHPPRPKVHALCNSRLVGSINGLLCLVHHNEFFLWNPIIGRYRSFTIPREYVPNVDNRSWPRYRYLIGFCWDCMENNYQVIVCYIFSSFRQ--GVVYSSNSNSWT---------KLVVPKFVFPSRVFESASGIEQITPTTIVNECPYWCYSRFLPKMRRKYT---AIIKFEVQTQKFRSLPEIDYALVRGQNYNFANFKDCLAIMVYRSESPKTAVEIYILHEKS----GVWNKVFTIGSPQSNLNIGSLLQGFKFGDEIVIQVIDKVFCYDLQSDEVKGFLGSSNQCEVLECFSYTASFVFLEGMERVQSR 405
[Close]
BLAST of XM_017363376.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6L5BC01 (F-box domain-containing protein {ECO:0000259|SMART:SM00256})

HSP 1 Score: 145.206 bits (365), Expect = 1.981e-36
Identity = 130/395 (32.91%), Postives = 186/395 (47.09%), Query Frame = 0
 
Query:   23 KTVSLPEELIQEEILPRLPITSLVRFKLVCKSWRCLFSDPRFVKQHNNYQNPD---DNDCLVVHK----SNHIAILSRYGEKFVLRSYGY---RLIGSANGLV--CIRSGEVLSIWNPATRQSMEFHLPPLGYGCLKRV------GFGFDHVSNDYKVAI-CYNSLEFLRVFYAVYSCRSGTWTYHEFDHH-DYEIIISKFEDSFTPTTMVKDSPYWTCS---TIVSSRKDKINLSLVALKFDATSNEFKLLPDFSSDFSCEKTFKVLNMKGLLSFMAYELCPVRK--LEVYSLDEENGCGGGVWSKMYCFGPFEEFRRFRLLQQG------FKNGDEIVIYDNAEIYR-YNHKM-------GTFECIPSTAPRFILDCFTHTPSLVSLQGMTSI 378
            K V+LPE+++  EI+ RLP+  ++R + VCKSW   FS   FV  H  +Q  D   D+D L++ K       I+ILS   E F +RS       ++GS NGL+  C   G    +WNPA  Q   F +PP  Y   K        GF +D V NDYKV + CY S         +YS  S TWT      H      I+       P+T+VK +PYW+ S   T    R ++        KF     EF+ LPDF +  S E  F V+N    +  M+YE     +  +++YSLD ++    G WSKMY  GP         L  G      +KNG EI+IY +   +  Y+ K        G+   + +   R     +++TPSL+ ++GM S+
Sbjct:   52 KNVTLPEDILYNEIVSRLPLKFILRCRRVCKSWNSRFSTSDFVNSHLTHQLQDKQEDDDDLIITKCFAVDEGISILSHTNE-FPVRSVPCVCDTILGSINGLILMCSTRGRRFCLWNPAVGQVKFFCMPPPRYHPTKDECEHFVGGFCWDRVQNDYKVLMFCYESTRTPPSQLCIYSFNSATWTRLCIPQHPKLRGPIANPNLMVHPSTIVKGTPYWSYSENRTYPGKRHER--KFFCTFKFVPEIKEFRFLPDFHTRSSDESNF-VVNADDRVVRMSYEKIRGEETLVKIYSLDNDD---SGTWSKMYTIGPMS-------LALGCWPSHCYKNGGEILIYKHRGPFSLYDPKTKETKEFDGSISTVNANRIRMY---YSYTPSLICVRGMESM 429
[Close]
BLAST of XM_017363376.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N0UTT1 (F-box domain-containing protein {ECO:0000259|PROSITE:PS50181})

HSP 1 Score: 114.39 bits (285), Expect = 1.097e-25
Identity = 104/383 (27.15%), Postives = 183/383 (47.78%), Query Frame = 0
 
Query:   26 SLPEELIQEEILPRLPITSLVRFKLVCKSWRCLFSDPRFVKQHNNYQNPDDNDCLVVHK------SNHIAILSRYGEKFVLR-----------SYGYRLIGSANGLVCI---RSGEVLSIWNPATRQSMEFHLPPLGYGCLKRV-----GFGFDHVSNDYKVAICYNSLEFLRV------FYAVYSCRSGTWTYHEFDHHDYEIIISKFEDSFTPTTMVKDSPYWTCSTIVSSRKDKINLSLVALKFDATSNEFKLLPDFSSD-FSCEKTFKVLNMKGLLSFMAYELCP--VRKLEVYSLDEENGCGGGVWSKMYCFGPFEEFRRFRLLQQGFKNGDEIVIYDNAEIYRYNHKMGTFECIPSTAPRFILDCFTHTPSLVSLQG 374
            +LP+++I + IL RLP+ SL+RF+ VCKSWR L ++P F+ +H N Q    N+ LVVH        + + ++ R  +K   R           S   RL+GS+NGL+CI    +  V+ +WNPATR+        +     KRV     GFGF+  S+DYK+ + + S + L+          VYS  +  W        +    +    + ++PT +V  + +W  S  V+  KD I+   V + FD  +  F  LP   S+ ++    F++  ++  LS + +       + ++++ + E        W+K +    F    R       FKNG+ I+  +  +++ YN +   F  +P  + R++ D  ++  SLV+++ 
Sbjct:   15 NLPKDIIVD-ILCRLPVRSLLRFRCVCKSWRTLIANPSFIAKHFN-QAITCNEQLVVHTKRSFEVKHAVTMIVRTNKKRNDRLNVELPPPCDISNYVRLVGSSNGLLCISLCSTASVILLWNPATREFRNLPERQILVPTGKRVHTVFLGFGFEPNSSDYKI-VRFLSYKVLKSNVPKVGVVEVYSQITDMW-------KEVNAGLKCQVNEYSPTAVVSGAVHWLGSR-VAKEKDSIDGKDVIVSFDLGNEVFGDLPLPESNVYAQGHGFQICVLEESLSVLVFPTSGNMSKSIDIWVMKEYGVAAS--WAKQFSIRLFTGVSR---PVGCFKNGELILQNNKEKLFLYNPRTKKFGTLPLCSARYVYDVHSYAESLVAVRA 381
[Close]
BLAST of XM_017363376.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G3D5V6 (F-box domain-containing protein {ECO:0000259|PROSITE:PS50181})

HSP 1 Score: 114.005 bits (284), Expect = 2.641e-25
Identity = 111/396 (28.03%), Postives = 173/396 (43.69%), Query Frame = 0
 
Query:    7 AVRVSPERAQPGSKKHKTVSLPE-----ELIQEEILPRLPITSLVRFKLVCKSWRCLFSDPRFVKQHNNY--QNPDDNDCL--VVHKSNHIAI--LSRYGEKFVLRSYGYRLIGSANGLVCIRSGEV---LSIWNPATRQSMEFHLPPLGYGCLKRVGFGFDHVSNDYKVAICYNSLEFLR-VFYAVYSCRSGTWTYHEFDHHDYEIIISKFEDSFTPTTMVKDSPYWTCSTIVSSRKDKINLSLVALKFDATSNEFKLLPDFSSDFSCEKTFKVLNMKGLLSFMAYELCPVRK--LEVYSLDEENGCGGGVWSKMYCFGPFEEFRRFRLLQQGF----KNGDEIVIYDNAEIYRYNHKMGTFECIPSTAPRFILDCFTHTPSLVSLQGMTSIYSK 381
            A+  +P   +PGS       +P      E I E+I  RLP+ +L+RFK + K W  LFS PRF+ +H N    +PD N  L     +++ I +  LSR       R + Y  +GS NGLVC+ S +    + +WNP   Q M   LP +    L  VGFG++  S+DYKV    N     +     +YS +SG+W   +   +D  + +     S     +V+   YW  +       ++  L      FD  S  F ++P      +   + + +N  G L+ +A+      K  LEV+ + E  G   GVW K        +F R   L  GF    K  + + + D       + K+G  +         I   F +T SLVS++G   + S+
Sbjct:   52 AISKAPWGNRPGSLMKNATGIPSIPDLPEEIVEDIFSRLPVNTLLRFKCLGKHWGTLFSTPRFISEHLNKFSSDPDANYVLFDTWGRTDLIPMRNLSRVINLNQPRDFYYNAVGSVNGLVCLTSNDFYKPICLWNPLINQCMFLPLPNVKRPTLVSVGFGYEQNSDDYKVMRVINYCNGRQETKLELYSTKSGSWRRVK---NDVYVKVKNAVYSTNCDAIVEGFTYWFIT-------NENGLKTALASFDLRSEVFSIIPVPEVLATESYSLRAMNSHGSLALLAHSSEDEFKKCLEVWVI-EGGGGAEGVWQKKSTVNIGFDFSRHWGLTSGFTVVEKAPNMLFLVDLRT--EQSRKIGEID---------IRRVFYYTESLVSIEGFEPVPSQ 425
[Close]
BLAST of XM_017363376.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G3A7S7 ((putative F-box protein At3g24700 {ECO:0000313|RefSeq:XP_016562022.1}))

HSP 1 Score: 112.849 bits (281), Expect = 2.943e-25
Identity = 109/371 (29.38%), Postives = 168/371 (45.28%), Query Frame = 0
 
Query:   27 LPEELIQEEILPRLPITSLVRFKLVCKSWRCLFSDPRFVKQHNN--YQNPDDNDCL--VVHKSNHIAI--LSRYGEKFVLRSYGYRLIGSANGLVCIRSGEV---LSIWNPATRQSMEFHLPPLGYGCLKRVGFGFDHVSNDYKVAICYNSLEFLR-VFYAVYSCRSGTWTYHEFDHHDYEIIISKFEDSFTPTTMVKDSPYWTCSTIVSSRKDKINLSLVALKFDATSNEFKLLPDFSSDFSCEKTFKVLNMKGLLSFMAY--ELCPVRKLEVYSLDEENGCGGGVWSKMYCFGPFEEFRRFRLLQQGF----KNGDEIVIYDNAEIYRYNHKMGTFECIPSTAPRFILDCFTHTPSLVSLQGMTSIYSK 381
            LPEE++ E+I  RLP+ +L+RFK + K W  LFS PRF+ +H N    +PD N  L     +++ I +  LSR       R + Y  +GS NGLVC+ S +    + +WNP   Q M   LP +    L  VGFG++  S+DYKV    N     +     VYS +SG+W   +   +D  I +     S     +V+   YW  +       ++  L      FD  S  F ++P      +   + + +N  G L+ +A+  E    + LEV+ + E  G   GVW K        +F R   L  GF    K  + + + D       + K+G  +         I   F +T SLVS++G   + S+
Sbjct:   13 LPEEIV-EDIFSRLPVNTLLRFKCLGKHWGTLFSTPRFISEHLNKFSSDPDANYVLFDTWGRTDLIPMRNLSRVINLNQPRDFYYNAVGSVNGLVCLTSNDFYKPICLWNPLINQCMFLPLPNIKRPTLVSVGFGYEQHSDDYKVMRVINYCNGRQETKLEVYSTKSGSWRKVK---NDVYIKVKNAVYSTNCDAIVEGFTYWFIT-------NENGLKTALASFDLRSEVFSIIPVPEVLATESYSLRAMNSHGSLALLAHSSEDEFNKCLEVWVI-EGGGGAEGVWQKKSTVNIGFDFSRHWGLTSGFTVVEKAPNMLFLVDLRT--EQSRKIGEID---------IRRVFYYTESLVSIEGFEPVPSQ 360
[Close]
BLAST of XM_017363376.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8FS50 (F-box domain-containing protein {ECO:0000259|PROSITE:PS50181})

HSP 1 Score: 112.849 bits (281), Expect = 2.943e-25
Identity = 109/371 (29.38%), Postives = 168/371 (45.28%), Query Frame = 0
 
Query:   27 LPEELIQEEILPRLPITSLVRFKLVCKSWRCLFSDPRFVKQHNN--YQNPDDNDCL--VVHKSNHIAI--LSRYGEKFVLRSYGYRLIGSANGLVCIRSGEV---LSIWNPATRQSMEFHLPPLGYGCLKRVGFGFDHVSNDYKVAICYNSLEFLR-VFYAVYSCRSGTWTYHEFDHHDYEIIISKFEDSFTPTTMVKDSPYWTCSTIVSSRKDKINLSLVALKFDATSNEFKLLPDFSSDFSCEKTFKVLNMKGLLSFMAY--ELCPVRKLEVYSLDEENGCGGGVWSKMYCFGPFEEFRRFRLLQQGF----KNGDEIVIYDNAEIYRYNHKMGTFECIPSTAPRFILDCFTHTPSLVSLQGMTSIYSK 381
            LPEE++ E+I  RLP+ +L+RFK + K W  LFS PRF+ +H N    +PD N  L     +++ I +  LSR       R + Y  +GS NGLVC+ S +    + +WNP   Q M   LP +    L  VGFG++  S+DYKV    N     +     VYS +SG+W   +   +D  I +     S     +V+   YW  +       ++  L      FD  S  F ++P      +   + + +N  G L+ +A+  E    + LEV+ + E  G   GVW K        +F R   L  GF    K  + + + D       + K+G  +         I   F +T SLVS++G   + S+
Sbjct:   13 LPEEIV-EDIFSRLPVNTLLRFKCLGKHWGTLFSTPRFISEHLNKFSSDPDANYVLFDTWGRTDLIPMRNLSRVINLNQPRDFYYNAVGSVNGLVCLTSNDFYKPICLWNPLINQCMFLPLPNIKRPTLVSVGFGYEQHSDDYKVMRVINYCNGRQETKLEVYSTKSGSWRKVK---NDVYIKVKNAVYSTNCDAIVEGFTYWFIT-------NENGLKTALASFDLRSEVFSIIPVPEVLATESYSLRAMNSHGSLALLAHSSEDEFNKCLEVWVI-EGGGGAEGVWQKKSTVNIGFDFSRHWGLTSGFTVVEKAPNMLFLVDLRT--EQSRKIGEID---------IRRVFYYTESLVSIEGFEPVPSQ 360
[Close]
BLAST of XM_017363376.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2M4P4 (F-box domain-containing protein {ECO:0000259|PROSITE:PS50181})

HSP 1 Score: 112.849 bits (281), Expect = 3.758e-25
Identity = 114/382 (29.84%), Postives = 175/382 (45.81%), Query Frame = 0
 
Query:   23 KTVSLPEELIQEEILPRLPITSLVRFKLVCKSWRCLFSDPRFVKQHNNYQNPDDNDCLVVH--KSNH-IAILSRYGEKFVLRSYGYR---------LIGSANGLVCIRSGEVLSIWNPATRQSMEFHLPPLGYGCLKRVGFGFDHVSNDYKVAICYNSLEF----LRVFYAVYSCRSGTWTYHEFDHHDYEIIISKFEDSFTPTTMVKDSPYW-----TC-STIVSSRKDKINLSLVALKFDATSNEFKLLPDFSS----DFSCEKTFKVLNMK-GLLSFMAYELCPVRKLEVYSLDEE--NGCGGGVWSKMYCFGPFEEFRRFRLLQQGFKNGDEIVIYDNAEIYRYNHKMGTFECIPST-APRFILDCFTHTPSLVSLQG 374
            +T  LPEE++ + IL RLP+ SL+RF+LVCKSW  L  +P F+  H NY +  + + L+VH    NH I++LS       L+    R         ++GS NGLVC+     + +WNPAT++      P +   C + +GFGF HV  DYKV    NS       +     VYS  SG+W            II  + +    + ++K  PYW      C +TI   R++ +    V L FD   NE  L  D        +   K   V N    ++ + +YE   +R +E++ + +   + C    W ++   GPF            ++NG  I+     E+  Y+  +G  E +P+  AP F     T+  SLV + G
Sbjct:    4 RTEYLPEEILTD-ILLRLPVKSLMRFRLVCKSWFTLLKNPNFIATHLNYSSAYNCNHLLVHTQAENHTISLLSNKTLNVTLKIDSPRTPKVVEREVIVGSCNGLVCLSRDSEIVLWNPATKEHKVLPTPSISTEC-RSIGFGF-HVE-DYKVVRMVNSNYLVSGKITPKVEVYSTSSGSWRV-------INAIIPCYVEQRKCSVVLKGVPYWLGFGPICPNTIFVPRREVLRDEFV-LSFDM-GNEVFLQVDVPGAKDYHYKYSKKLGVYNESVAIMYYPSYEK-DIRFIELWVMKDHVVDEC----WVQVLRIGPFSTLWT---PLGCWENGVVILQNHKDELLLYDPIIGKAEAVPTNGAPMFSTSIATYMESLVPVDG 364
[Close]
BLAST of XM_017363376.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G2XE33 (F-box domain-containing protein {ECO:0000259|PROSITE:PS50181})

HSP 1 Score: 111.694 bits (278), Expect = 6.643e-25
Identity = 108/373 (28.95%), Postives = 165/373 (44.24%), Query Frame = 0
 
Query:   27 LPEELIQEEILPRLPITSLVRFKLVCKSWRCLFSDPRFVKQHNNY--QNPDDN----DCLVVHKSNHIAILSRYGEKFVLRSYGYRLIGSANGLVCIRSGEV---LSIWNPATRQSMEFHLPPLGYGCLKRVGFGFDHVSNDYKVAIC---YNSLEFLRVFYAVYSCRSGTWTYHEFDHHDYEIIISKFEDSFTPTTMVKDSPYWTCSTIVSSRKDKINLSLVALKFDATSNEFKLLPDFSSDFSCEKTFKVLNMKGLLSFMAYELCPVRK--LEVYSLDEENGCGGGVWSKMYCFGPFEEFRRFRLLQQGF----KNGDEIVIYDNAEIYRYNHKMGTFECIPSTAPRFILDCFTHTPSLVSLQGMTSIYSK 381
            LPEE+  E+I  RLP+ +L+RFK + K W  LFS PRF+ +H N    +PD N    D         +  LSR       R + Y  +GS NGLVC+ S +    + +WNP   Q M   LP +    L  VGFG++  S+DYKV      YN  +  ++   VYS +SG+W   +   +D  + +     S     +V+   YW  +       ++  L      FD  S  F ++P      +   + + +N  G L+ +A+      K  LEV+ + E  G   GVW K        +F R   L  GF    K  + + + D       + K+G  +         I   F +T SLVS++G   + S+
Sbjct:   13 LPEEIF-EDIFSRLPVNTLLRFKCLGKHWGTLFSTPRFISEHLNKFSSDPDANYILFDTWGRTDLTPVRNLSRMINLNQPRDFYYNAVGSVNGLVCLTSNDFYTPICLWNPLINQCMFLPLPNVKRPTLVSVGFGYEQNSDDYKVMRVINYYNGRQETKL--EVYSTKSGSWRKVK---NDVYVKVKNAVFSTNCDAIVEGFTYWFIT-------NENGLKTALASFDLRSEVFSIIPVPEVLATESYSLRAMNSHGSLALLAHSSEDEFKKCLEVWVI-EGGGGAEGVWQKKSTVNLGFDFSRHWGLTSGFTVVEKAPNMLFLVDLRT--EQSRKIGEID---------IRRVFYYTESLVSIEGFEPVPSQ 360
[Close]
BLAST of XM_017363376.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5A4A1 (F-box domain-containing protein {ECO:0000259|PROSITE:PS50181})

HSP 1 Score: 112.464 bits (280), Expect = 7.195e-25
Identity = 106/390 (27.18%), Postives = 178/390 (45.64%), Query Frame = 0
 
Query:   27 LPEELIQEEILPRLPITSLVRFKLVCKSWRCLFSDPRFVKQHNN----YQNPDDNDCLVV--HKSN------HIAILS---------RYGEKFVLRSYGYRLIGSANGLVCIR---SGEVLSIWNPATRQSMEFHLPPLGY---GCLKRV-GFGFDHVSNDYKVAICYNSLEFLRVFY--------AVYSCRSGTWTYHEFDHHDYEIIISKFEDSFTPTTMVKDSPYWTCSTIVSSRKDKINLSLVALKFDATSNEFK--LLPDF--SSDFSCEKTFKVLNMKGLLSFMAY-ELCPVRKLEVYSLDEENGCGGGVWSKMYCFGPFEEFRRFRLLQQGFKNGDEIVIY-DNAEIYRYNHKMGTFECIPSTAPRFILDCFTHTPSLVSLQG 374
            LP ++I + IL RLP+ SL+RFK VCKSW  L  +P F  +H N    +    ++ C +    +SN       +++LS              F+  S   R+ G++NGLVC+     G ++ +WNPATR+  +  + P+     G +K V GFGFD  +NDYKV         LR+ Y         VYS R+ +W   E +     II+       +    ++   +WT   +       +N   + + FD    EF+   LPD   S D      + ++ +K  L+ + Y    P +  +++ ++E     GG W+K+  FGP+    +      G +N  E++++ DN E+  +      F  +P     +  + F H  SL+ ++G
Sbjct:   13 LPRDVIVD-ILSRLPVRSLLRFKCVCKSWYDLLKNPNFCAKHFNQITFHNTTTNSSCFLFTRRQSNANNNYRSVSLLSSNETFDVPINLDIPFLSISKPLRISGTSNGLVCLSVTPVGSIILLWNPATREFKDLPISPISRPQSGPIKVVFGFGFDPNTNDYKV---------LRIVYYCYPCNQVEVYSLRTNSW--REINTPVQFIIMES-----SCRVFLRGKFHWTALGV-----GDLNGRELIVSFDMRDEEFRHMTLPDIRHSDDEDFGYGWHLVALKDCLAVIVYPSDAPNKSFDIWVMNEYG--VGGSWTKLMSFGPYPGVNK----PLGCRNNGEVLLHKDNGELVLFEPGTREFRNVPINGAPYCSEVFIHMESLLPVRG 374
[Close]
BLAST of XM_017363376.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6RD30 (F-box domain-containing protein {ECO:0000259|PROSITE:PS50181})

HSP 1 Score: 111.309 bits (277), Expect = 1.627e-24
Identity = 115/404 (28.47%), Postives = 179/404 (44.31%), Query Frame = 0
 
Query:   18 GSKKHKTV--SLPEELIQEEILPRLPITSLVRFKLVCKSWRCLFSDPRFVKQHNNYQNPDDN---DCLVVHK-----SNHIAILSRYGEKFVLRSYGYR-----------------LIGSANGLVCIRSGEVLSIWNPATRQSMEFHLPPLGYGCLKRVGFGFDHVSNDYKVA-ICYNSLEFLRVFYAVYSCRSGTWTYHEFDHHDYEIIISKFEDSFTPTTMVKDSPYWTCSTIVSSRKDKINLSLVALKFDATSNEFKLLPDFSSDFSCEKTFKVLNMKGLLSF-MAYELCPVR-KLEVYSLDEENGCGG----------GVWSKMYCFGPFE-EFRR----FRLLQQGFKNGDEIVIYDNAEIYRYNHKMGTFECIPSTAPRF-----ILDCFTHTPSLVS 371
             S+ H     ++P ELI E IL RLP  SL+RF+ VCKSWR L SDP+F+K+  ++ + + N     ++V K     S+H  I S Y    V   +  +                  +GS NGLVC+R G +L +WNP+TR+S      PL   C    GFG+D   +DYKV  +  N  +  +V   VY  R+  W   E  +  Y + +      F  +     + YW      S  + + N+    + FD ++ +F  +P    ++  + +F +L   G+L      EL  VR  L +     +  CG           GVW+K+    PF+ +  R    +RLL   F    E ++    ++  Y+ K   FE +P           IL+  T+  SL+S
Sbjct:    2 ASQSHAATIKNIPHELITE-ILARLPTKSLIRFRCVCKSWRSLISDPQFLKKQLHFSHAEPNFSRQRIIVFKLGLPSSDH-RIASSYSVHSVFDDHQMQYSFDVPLPMTDPASYIEFVGSCNGLVCLREGRILHLWNPSTRESKRL---PLSIHCDDFFGFGYDESVDDYKVVRLLKNVGDTCKV--EVYELRADCW--REIQNFPYSLPV------FAWSVYANGALYWAVLREHSPERTRWNV----VAFDLSTEKFIEVP--QPNYIDDDSFSLLAGHGVLHLNFVLELVVVRGSLYLVCHYIQCSCGSHAGVWIMKEDGVWAKLAKI-PFQHQMNRTEQFWRLL--CFSRNGEFLMARKDKLVLYSSKEDAFEDLPIHGGELLLHGSILEIKTYVESLIS 381
Match NameStatsDescription
A0A6L5BB42E-Value: 5.658e-45, PID: 31.04F-box domain-containing protein {ECO:0000259|SMART... [more]
A0A6L5BC01E-Value: 1.981e-36, PID: 32.91F-box domain-containing protein {ECO:0000259|SMART... [more]
A0A7N0UTT1E-Value: 1.097e-25, PID: 27.15F-box domain-containing protein {ECO:0000259|PROSI... [more]
A0A2G3D5V6E-Value: 2.641e-25, PID: 28.03F-box domain-containing protein {ECO:0000259|PROSI... [more]
A0A2G3A7S7E-Value: 2.943e-25, PID: 29.38(putative F-box protein At3g24700 {ECO:0000313|Ref... [more]
A0A1U8FS50E-Value: 2.943e-25, PID: 29.38F-box domain-containing protein {ECO:0000259|PROSI... [more]
A0A7N2M4P4E-Value: 3.758e-25, PID: 29.84F-box domain-containing protein {ECO:0000259|PROSI... [more]
A0A2G2XE33E-Value: 6.643e-25, PID: 28.95F-box domain-containing protein {ECO:0000259|PROSI... [more]
A0A5J5A4A1E-Value: 7.195e-25, PID: 27.18F-box domain-containing protein {ECO:0000259|PROSI... [more]
A0A5N6RD30E-Value: 1.627e-24, PID: 28.47F-box domain-containing protein {ECO:0000259|PROSI... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.