Resource Type:
Polypeptide
Name:
XM_017364387.1
Identifier:
XM_017364387.1-protein
Sequence:
MGNLFCCVQVDQSTVAIKEHFGKFDDVLDPGCHCLPWVFGYQIAGHLSLR
VQQLDVKCETKTKDNVFVNVVASIQYRALSEKANDAFYRLSNTRSQIQAY
VFDVIRGTVPKLNLDAAFEQKNDIAKAVEDELEKAMSHYGYEIVQTLIVD
IEPDEHVKRAMNEINAAARLRMAATEKAEAEKILQIKRAEGEAESKYLSG
LGIARQRQAIVDGLRDSVLGFSVNVPGTTAKDVMDMVLVTQYFDTMKEIG
ASSKSSAVFIPHGPGAVRDVATQIRDGLLQGSAAQH
Sequence Length:
286
Sequence Checksum:
6f9492deb3700609c6058962fe785fb5
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017364387.1, derives from mRNA, XM_017364387.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017364387.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017364387.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5C7H058 (PHB domain-containing protein {ECO:0000259|SMART:SM00244})
HSP 1 Score: 549.28 bits (1414), Expect = 0.000e+0
Identity = 261/285 (91.58%), Postives = 276/285 (96.84%), Query Frame = 0
Match: A0A5C7H058 (PHB domain-containing protein {ECO:0000259|SMART:SM00244})
HSP 1 Score: 549.28 bits (1414), Expect = 0.000e+0
Identity = 261/285 (91.58%), Postives = 276/285 (96.84%), Query Frame = 0
Query: 1 MGNLFCCVQVDQSTVAIKEHFGKFDDVLDPGCHCLPWVFGYQIAGHLSLRVQQLDVKCETKTKDNVFVNVVASIQYRALSEKANDAFYRLSNTRSQIQAYVFDVIRGTVPKLNLDAAFEQKNDIAKAVEDELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRMAATEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTTAKDVMDMVLVTQYFDTMKEIGASSKSSAVFIPHGPGAVRDVATQIRDGLLQGSAAQ 285
MGNL CC+QVDQSTVAIKE FGKFD VL+PGCHCLPW+ G+Q+AGHLSLR+QQLDVKCETKTKDNVFVNVVASIQYRAL++KANDAFY+LSNTR+QIQAYVFDVIR +VPKLNLD AFEQKN+IAKAVEDELEKAMS YGYEIVQTLIVDIEPDEHVKRAMNEINAAARLR+AA EKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTTAKDVMDMVLVTQYFDTMKEIGA+SKSSAVFIPHGPGAVRDVATQIRDGLLQGS+ Q
Sbjct: 1 MGNLLCCIQVDQSTVAIKEKFGKFDHVLEPGCHCLPWILGHQLAGHLSLRLQQLDVKCETKTKDNVFVNVVASIQYRALADKANDAFYKLSNTRTQIQAYVFDVIRASVPKLNLDDAFEQKNEIAKAVEDELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTTAKDVMDMVLVTQYFDTMKEIGAASKSSAVFIPHGPGAVRDVATQIRDGLLQGSSGQ 285
BLAST of XM_017364387.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7CKX6 ((Hypersensitive-induced response protein 1 {ECO:0000313|EMBL:KAF5734715.1}))
HSP 1 Score: 548.895 bits (1413), Expect = 0.000e+0
Identity = 261/285 (91.58%), Postives = 276/285 (96.84%), Query Frame = 0
Match: A0A7J7CKX6 ((Hypersensitive-induced response protein 1 {ECO:0000313|EMBL:KAF5734715.1}))
HSP 1 Score: 548.895 bits (1413), Expect = 0.000e+0
Identity = 261/285 (91.58%), Postives = 276/285 (96.84%), Query Frame = 0
Query: 1 MGNLFCCVQVDQSTVAIKEHFGKFDDVLDPGCHCLPWVFGYQIAGHLSLRVQQLDVKCETKTKDNVFVNVVASIQYRALSEKANDAFYRLSNTRSQIQAYVFDVIRGTVPKLNLDAAFEQKNDIAKAVEDELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRMAATEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTTAKDVMDMVLVTQYFDTMKEIGASSKSSAVFIPHGPGAVRDVATQIRDGLLQGSAAQ 285
MGNLFCC+QVDQSTVAIKE FGKFD+VL+PGCHCLPW G Q+AGHLSLR+QQLDVKCETKTKDNVFVNVVASIQYRAL++KANDAFY+LSNT+SQIQAYVFDVIR +VPKLNLD AFEQKNDIAKAVEDELEKAMS YGYEIVQTLIVDIEPDEHVKRAMNEINAAARLR+AA +KAEAEKILQIKRAEGEAE+KYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTTAKDVMDMVLVTQYFDTMKEIGA+SKSSAVFIPHGPGAVRDVA+QIRDGLLQGSA Q
Sbjct: 1 MGNLFCCIQVDQSTVAIKEQFGKFDEVLEPGCHCLPWFLGSQLAGHLSLRLQQLDVKCETKTKDNVFVNVVASIQYRALADKANDAFYKLSNTKSQIQAYVFDVIRASVPKLNLDDAFEQKNDIAKAVEDELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRVAANDKAEAEKILQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTTAKDVMDMVLVTQYFDTMKEIGAASKSSAVFIPHGPGAVRDVASQIRDGLLQGSAPQ 285
BLAST of XM_017364387.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4Y1RIZ4 ((SPFH/Band 7/PHB domain-containing membrane-associated protein family {ECO:0000313|EMBL:BBH03906.1}) (Fragment))
HSP 1 Score: 548.51 bits (1412), Expect = 0.000e+0
Identity = 260/282 (92.20%), Postives = 275/282 (97.52%), Query Frame = 0
Match: A0A4Y1RIZ4 ((SPFH/Band 7/PHB domain-containing membrane-associated protein family {ECO:0000313|EMBL:BBH03906.1}) (Fragment))
HSP 1 Score: 548.51 bits (1412), Expect = 0.000e+0
Identity = 260/282 (92.20%), Postives = 275/282 (97.52%), Query Frame = 0
Query: 1 MGNLFCCVQVDQSTVAIKEHFGKFDDVLDPGCHCLPWVFGYQIAGHLSLRVQQLDVKCETKTKDNVFVNVVASIQYRALSEKANDAFYRLSNTRSQIQAYVFDVIRGTVPKLNLDAAFEQKNDIAKAVEDELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRMAATEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTTAKDVMDMVLVTQYFDTMKEIGASSKSSAVFIPHGPGAVRDVATQIRDGLLQGS 282
MGNLFCCVQVDQSTVA+KE FG+F +VL+PGCHCLPW G+QIAGHLSLR+QQLDV+CETKTKDNVFVNVVASIQYRAL++KANDAFY+LSNTRSQIQAYVFDVIR +VPKLNLDAAFEQKNDIAKAVEDELEKAMS YGYEIVQTLIVDIEPDEHVKRAMNEINAAAR+R+AA EKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTTAKDVMDMVLVTQYFDTMKEIGASSKSSAVFIPHGPG+VRDVA+QIRDGLLQGS
Sbjct: 41 MGNLFCCVQVDQSTVAVKEKFGRFVEVLEPGCHCLPWFLGHQIAGHLSLRLQQLDVRCETKTKDNVFVNVVASIQYRALADKANDAFYKLSNTRSQIQAYVFDVIRASVPKLNLDAAFEQKNDIAKAVEDELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARMRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTTAKDVMDMVLVTQYFDTMKEIGASSKSSAVFIPHGPGSVRDVASQIRDGLLQGS 322
BLAST of XM_017364387.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5E4EPQ2 ((Full=PREDICTED: hypersensitive-induced {ECO:0000313|EMBL:VVA17050.1}))
HSP 1 Score: 546.584 bits (1407), Expect = 0.000e+0
Identity = 260/282 (92.20%), Postives = 275/282 (97.52%), Query Frame = 0
Match: A0A5E4EPQ2 ((Full=PREDICTED: hypersensitive-induced {ECO:0000313|EMBL:VVA17050.1}))
HSP 1 Score: 546.584 bits (1407), Expect = 0.000e+0
Identity = 260/282 (92.20%), Postives = 275/282 (97.52%), Query Frame = 0
Query: 1 MGNLFCCVQVDQSTVAIKEHFGKFDDVLDPGCHCLPWVFGYQIAGHLSLRVQQLDVKCETKTKDNVFVNVVASIQYRALSEKANDAFYRLSNTRSQIQAYVFDVIRGTVPKLNLDAAFEQKNDIAKAVEDELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRMAATEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTTAKDVMDMVLVTQYFDTMKEIGASSKSSAVFIPHGPGAVRDVATQIRDGLLQGS 282
MGNLFCCVQVDQSTVA+KE FG+F +VL+PGCHCLPW G+QIAGHLSLR+QQLDV+CETKTKDNVFVNVVASIQYRAL++KANDAFY+LSNTRSQIQAYVFDVIR +VPKLNLDAAFEQKNDIAKAVEDELEKAMS YGYEIVQTLIVDIEPDEHVKRAMNEINAAAR+R+AA EKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTTAKDVMDMVLVTQYFDTMKEIGASSKSSAVFIPHGPG+VRDVA+QIRDGLLQGS
Sbjct: 1 MGNLFCCVQVDQSTVAVKEKFGRFVEVLEPGCHCLPWFLGHQIAGHLSLRLQQLDVRCETKTKDNVFVNVVASIQYRALADKANDAFYKLSNTRSQIQAYVFDVIRASVPKLNLDAAFEQKNDIAKAVEDELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARMRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTTAKDVMDMVLVTQYFDTMKEIGASSKSSAVFIPHGPGSVRDVASQIRDGLLQGS 282
BLAST of XM_017364387.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZKF1 ((Putative hypersensitive-induced response protein 1 {ECO:0000313|EMBL:MPA44141.1}))
HSP 1 Score: 546.584 bits (1407), Expect = 0.000e+0
Identity = 259/283 (91.52%), Postives = 276/283 (97.53%), Query Frame = 0
Match: A0A5B6ZKF1 ((Putative hypersensitive-induced response protein 1 {ECO:0000313|EMBL:MPA44141.1}))
HSP 1 Score: 546.584 bits (1407), Expect = 0.000e+0
Identity = 259/283 (91.52%), Postives = 276/283 (97.53%), Query Frame = 0
Query: 1 MGNLFCCVQVDQSTVAIKEHFGKFDDVLDPGCHCLPWVFGYQIAGHLSLRVQQLDVKCETKTKDNVFVNVVASIQYRALSEKANDAFYRLSNTRSQIQAYVFDVIRGTVPKLNLDAAFEQKNDIAKAVEDELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRMAATEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTTAKDVMDMVLVTQYFDTMKEIGASSKSSAVFIPHGPGAVRDVATQIRDGLLQGSA 283
MGN+FCC+QVDQSTVAIKE FGKFD+VL+PGCHCLPW+ G Q+AGHLSLR+QQLDV+CETKTKDNVFVNVVASIQYRAL++KA+DAFY+LSNTR+QIQAYVFDVIR +VPKLNLD AFEQKN+IAKAVE+ELEKAMS YGYEIVQTLIVDIEPDEHVKRAMNEINAAARLR+AA EKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTTAKDVMDMVLVTQYFDTMKEIGASSKSSAVFIPHGPGAVRDVATQIRDGLLQGSA
Sbjct: 1 MGNIFCCIQVDQSTVAIKERFGKFDEVLEPGCHCLPWILGSQLAGHLSLRLQQLDVRCETKTKDNVFVNVVASIQYRALADKADDAFYKLSNTRTQIQAYVFDVIRASVPKLNLDDAFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTTAKDVMDMVLVTQYFDTMKEIGASSKSSAVFIPHGPGAVRDVATQIRDGLLQGSA 283
BLAST of XM_017364387.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9RU15 ((hypersensitive-induced response protein-like protein 1 {ECO:0000313|RefSeq:XP_010932564.1, ECO:0000313|RefSeq:XP_010932640.1}))
HSP 1 Score: 546.199 bits (1406), Expect = 0.000e+0
Identity = 261/283 (92.23%), Postives = 274/283 (96.82%), Query Frame = 0
Match: A0A6I9RU15 ((hypersensitive-induced response protein-like protein 1 {ECO:0000313|RefSeq:XP_010932564.1, ECO:0000313|RefSeq:XP_010932640.1}))
HSP 1 Score: 546.199 bits (1406), Expect = 0.000e+0
Identity = 261/283 (92.23%), Postives = 274/283 (96.82%), Query Frame = 0
Query: 1 MGNLFCCVQVDQSTVAIKEHFGKFDDVLDPGCHCLPWVFGYQIAGHLSLRVQQLDVKCETKTKDNVFVNVVASIQYRALSEKANDAFYRLSNTRSQIQAYVFDVIRGTVPKLNLDAAFEQKNDIAKAVEDELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRMAATEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTTAKDVMDMVLVTQYFDTMKEIGASSKSSAVFIPHGPGAVRDVATQIRDGLLQGSA 283
MG L CCVQVDQSTVAI+E FGKFDDVL+PGCHCLPW+FG +IAGHLSLR+QQLDV+CETKTKDNVFVNVVASIQYRALS+KANDAFY+LSNTRSQIQAYVFDVIR +VPKLNLD AFEQKNDIAKAVE+ELEKAMS YGYEIVQTLIVDIEPDEHVKRAMNEINAAARLR+AA EKAEAEKI+QIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTTAKDVMDMVLVTQYFDTMKEIGA+SKSSAVFIPHGPGAVRDVATQIRDGLLQ SA
Sbjct: 1 MGQLLCCVQVDQSTVAIRETFGKFDDVLEPGCHCLPWIFGRRIAGHLSLRLQQLDVRCETKTKDNVFVNVVASIQYRALSDKANDAFYKLSNTRSQIQAYVFDVIRASVPKLNLDDAFEQKNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRVAANEKAEAEKIIQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTTAKDVMDMVLVTQYFDTMKEIGAASKSSAVFIPHGPGAVRDVATQIRDGLLQASA 283
BLAST of XM_017364387.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A103XXR4 ((Band 7 protein {ECO:0000313|EMBL:KVH98870.1}))
HSP 1 Score: 545.814 bits (1405), Expect = 0.000e+0
Identity = 258/286 (90.21%), Postives = 277/286 (96.85%), Query Frame = 0
Match: A0A103XXR4 ((Band 7 protein {ECO:0000313|EMBL:KVH98870.1}))
HSP 1 Score: 545.814 bits (1405), Expect = 0.000e+0
Identity = 258/286 (90.21%), Postives = 277/286 (96.85%), Query Frame = 0
Query: 1 MGNLFCCVQVDQSTVAIKEHFGKFDDVLDPGCHCLPWVFGYQIAGHLSLRVQQLDVKCETKTKDNVFVNVVASIQYRALSEKANDAFYRLSNTRSQIQAYVFDVIRGTVPKLNLDAAFEQKNDIAKAVEDELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRMAATEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTTAKDVMDMVLVTQYFDTMKEIGASSKSSAVFIPHGPGAVRDVATQIRDGLLQGSAAQH 286
MGNLFC VQVDQSTVAIKE FGKFDDVL+PGCHC+PW+FG Q+AGHL+LR+QQLDVKCETKTKDNVFVNVVASIQYRAL+EKANDAFY+LSNTRSQIQAYVFDVIR +VPKLNLD FEQKNDIAKAVE+EL KAMS YGYEIVQTLI+DIEPDE VK+AMNEINAAAR+R+AATEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTTAKDVMDMVLVTQYFDTMKEIGA+SKSSAVFIPHGPGAVRDVATQIRDGLLQG++A++
Sbjct: 1 MGNLFCLVQVDQSTVAIKETFGKFDDVLEPGCHCVPWIFGSQLAGHLTLRIQQLDVKCETKTKDNVFVNVVASIQYRALAEKANDAFYKLSNTRSQIQAYVFDVIRASVPKLNLDDVFEQKNDIAKAVEEELAKAMSAYGYEIVQTLIIDIEPDERVKKAMNEINAAARMRLAATEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTTAKDVMDMVLVTQYFDTMKEIGAASKSSAVFIPHGPGAVRDVATQIRDGLLQGNSARY 286
BLAST of XM_017364387.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251THW2 ((Putative SPFH/Band 7/PHB domain-containing membrane-associated protein family {ECO:0000313|EMBL:OTG10680.1}))
HSP 1 Score: 545.814 bits (1405), Expect = 0.000e+0
Identity = 260/284 (91.55%), Postives = 277/284 (97.54%), Query Frame = 0
Match: A0A251THW2 ((Putative SPFH/Band 7/PHB domain-containing membrane-associated protein family {ECO:0000313|EMBL:OTG10680.1}))
HSP 1 Score: 545.814 bits (1405), Expect = 0.000e+0
Identity = 260/284 (91.55%), Postives = 277/284 (97.54%), Query Frame = 0
Query: 1 MGNLFCCVQVDQSTVAIKEHFGKFDDVLDPGCHCLPWVFGYQIAGHLSLRVQQLDVKCETKTKDNVFVNVVASIQYRALSEKANDAFYRLSNTRSQIQAYVFDVIRGTVPKLNLDAAFEQKNDIAKAVEDELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRMAATEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTTAKDVMDMVLVTQYFDTMKEIGASSKSSAVFIPHGPGAVRDVATQIRDGLLQGSAA 284
MGNLFC VQVDQSTVAIKE FGKFDDVL+PGCHC+PW+FG ++AGHL+LRVQQLDVKCETKTKDNVFVNVVASIQYRAL++KA+DAFY+LSNTR+QIQAYVFDVIR +VPKLNLD FEQKN+IAKAVE+ELEKAMS YG+EIVQTLIVDIEPDEHVKRAMNEINAAARLR+AATEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTTAKDVMDMVLVTQYFDTMKEIGA+SKSSAVFIPHGPGAVRDVATQIRDGLLQGSAA
Sbjct: 1 MGNLFCLVQVDQSTVAIKETFGKFDDVLEPGCHCVPWIFGSRLAGHLTLRVQQLDVKCETKTKDNVFVNVVASIQYRALTDKASDAFYKLSNTRAQIQAYVFDVIRASVPKLNLDDVFEQKNEIAKAVEEELEKAMSAYGFEIVQTLIVDIEPDEHVKRAMNEINAAARLRVAATEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTTAKDVMDMVLVTQYFDTMKEIGAASKSSAVFIPHGPGAVRDVATQIRDGLLQGSAA 284
BLAST of XM_017364387.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6NXT8 (PHB domain-containing protein {ECO:0000259|SMART:SM00244})
HSP 1 Score: 545.814 bits (1405), Expect = 0.000e+0
Identity = 260/284 (91.55%), Postives = 277/284 (97.54%), Query Frame = 0
Match: A0A5N6NXT8 (PHB domain-containing protein {ECO:0000259|SMART:SM00244})
HSP 1 Score: 545.814 bits (1405), Expect = 0.000e+0
Identity = 260/284 (91.55%), Postives = 277/284 (97.54%), Query Frame = 0
Query: 1 MGNLFCCVQVDQSTVAIKEHFGKFDDVLDPGCHCLPWVFGYQIAGHLSLRVQQLDVKCETKTKDNVFVNVVASIQYRALSEKANDAFYRLSNTRSQIQAYVFDVIRGTVPKLNLDAAFEQKNDIAKAVEDELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRMAATEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTTAKDVMDMVLVTQYFDTMKEIGASSKSSAVFIPHGPGAVRDVATQIRDGLLQGSAA 284
MGNL C VQVDQSTVAIKE FGKFDDVL+PGCHC+PW+FG ++AGHL+LRVQQLDVKCETKTKDNVFVNVVASIQYRALS+KA+DAFY+LSNTR+QIQAYVFDVIR +VPKLNLD AFEQKN+IAKAVE+ELEKAMS YG+EIVQTLIVDIEPDEHVKRAMNEINAAARLRMAATEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTTAKDVMDMVLVTQYFDTMKEIGA+SKSSAVFIPHGPGAVRDVATQIR+GLLQG+AA
Sbjct: 1 MGNLLCLVQVDQSTVAIKETFGKFDDVLEPGCHCVPWIFGSRLAGHLTLRVQQLDVKCETKTKDNVFVNVVASIQYRALSDKASDAFYKLSNTRAQIQAYVFDVIRASVPKLNLDDAFEQKNEIAKAVEEELEKAMSTYGFEIVQTLIVDIEPDEHVKRAMNEINAAARLRMAATEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTTAKDVMDMVLVTQYFDTMKEIGAASKSSAVFIPHGPGAVRDVATQIREGLLQGNAA 284
BLAST of XM_017364387.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A6YGE4 ((Hypersensitive-induced response protein {ECO:0000313|EMBL:ABS01349.1}))
HSP 1 Score: 545.428 bits (1404), Expect = 0.000e+0
Identity = 260/285 (91.23%), Postives = 274/285 (96.14%), Query Frame = 0
Match: A6YGE4 ((Hypersensitive-induced response protein {ECO:0000313|EMBL:ABS01349.1}))
HSP 1 Score: 545.428 bits (1404), Expect = 0.000e+0
Identity = 260/285 (91.23%), Postives = 274/285 (96.14%), Query Frame = 0
Query: 1 MGNLFCCVQVDQSTVAIKEHFGKFDDVLDPGCHCLPWVFGYQIAGHLSLRVQQLDVKCETKTKDNVFVNVVASIQYRALSEKANDAFYRLSNTRSQIQAYVFDVIRGTVPKLNLDAAFEQKNDIAKAVEDELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRMAATEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTTAKDVMDMVLVTQYFDTMKEIGASSKSSAVFIPHGPGAVRDVATQIRDGLLQGSAAQ 285
MGNLFCCVQVDQSTVAI+E FGKFDDVL+PGCHCLPW G Q+AGHLSLR+QQLDV+CETKTKDNVFVNVVASIQYRAL++KANDAFY+LSNTR+QIQAYVFDVIR +VPKLNLD FEQKN+IAKAVEDELEKAMS YGYEIVQTLIVDIEPDEHVKRAMNEINAAARLR+AA EKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTTAKDVMDMVLVTQYFDTMKEIGA+SKSSAVFIPHGPGAVRDVATQIRDGLLQ S+ Q
Sbjct: 1 MGNLFCCVQVDQSTVAIRERFGKFDDVLEPGCHCLPWFLGSQLAGHLSLRLQQLDVRCETKTKDNVFVNVVASIQYRALADKANDAFYKLSNTRTQIQAYVFDVIRASVPKLNLDDVFEQKNEIAKAVEDELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTTAKDVMDMVLVTQYFDTMKEIGAASKSSAVFIPHGPGAVRDVATQIRDGLLQASSHQ 285
| Match Name | Stats | Description |
|---|---|---|
| A0A5C7H058 | E-Value: 0.000e+0, PID: 91.58 | PHB domain-containing protein {ECO:0000259|SMART:S... [more] |
| A0A7J7CKX6 | E-Value: 0.000e+0, PID: 91.58 | (Hypersensitive-induced response protein 1 {ECO:00... [more] |
| A0A4Y1RIZ4 | E-Value: 0.000e+0, PID: 92.20 | (SPFH/Band 7/PHB domain-containing membrane-associ... [more] |
| A0A5E4EPQ2 | E-Value: 0.000e+0, PID: 92.20 | (Full=PREDICTED: hypersensitive-induced {ECO:00003... [more] |
| A0A5B6ZKF1 | E-Value: 0.000e+0, PID: 91.52 | (Putative hypersensitive-induced response protein ... [more] |
| A0A6I9RU15 | E-Value: 0.000e+0, PID: 92.23 | (hypersensitive-induced response protein-like prot... [more] |
| A0A103XXR4 | E-Value: 0.000e+0, PID: 90.21 | (Band 7 protein {ECO:0000313|EMBL:KVH98870.1})[more] |
| A0A251THW2 | E-Value: 0.000e+0, PID: 91.55 | (Putative SPFH/Band 7/PHB domain-containing membra... [more] |
| A0A5N6NXT8 | E-Value: 0.000e+0, PID: 91.55 | PHB domain-containing protein {ECO:0000259|SMART:S... [more] |
| A6YGE4 | E-Value: 0.000e+0, PID: 91.23 | (Hypersensitive-induced response protein {ECO:0000... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |