Resource Type:
Polypeptide
Name:
XM_017363174.1
Identifier:
XM_017363174.1-protein
Sequence:
MKRFKWLKQIANNGKLERRLSLGEYRRAVSWSKYLISSGAAIKGEAEEEW
SADMSQLFIGNKFALGRHSRIYRGLYKQRDVAIKLISQPEEDQDLAAFLE
KQFTSEVALLFRLHHPNIITFFAACKNHPVFCIITEYLAGGSLRKYLHQQ
EPYSLPFNLVLKFAIDIARGMQYLHSQGIIHRDLKSENLLLGEDMCVKVA
DFGISCLESQCGSPKGFTGTYRWMAPEMIREKAHTKKVDVYSFGIVLWEL
LTALTPFDNMTPEQAAFAVCQKNARPPLPSTCPLAFRRLIRQCWARNPLK
RPQFDDIVAILESYAESLEQDPEFFSSYEVPSRHGISRYLPNLITSCANA
SQEA
Sequence Length:
354
Sequence Checksum:
6e238791fad67e7d38ba29f4ef4e285e
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017363174.1, derives from mRNA, XM_017363174.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017363174.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017363174.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7ALE5 ((Putative Serine/threonine-protein kinase HT1 {ECO:0000313|EMBL:MPA55893.1}) (2.7.11.1 {ECO:0000313|EMBL:MPA55893.1}))
HSP 1 Score: 621.698 bits (1602), Expect = 0.000e+0
Identity = 297/354 (83.90%), Postives = 316/354 (89.27%), Query Frame = 0
Match: A0A5B7ALE5 ((Putative Serine/threonine-protein kinase HT1 {ECO:0000313|EMBL:MPA55893.1}) (2.7.11.1 {ECO:0000313|EMBL:MPA55893.1}))
HSP 1 Score: 621.698 bits (1602), Expect = 0.000e+0
Identity = 297/354 (83.90%), Postives = 316/354 (89.27%), Query Frame = 0
Query: 1 MKRFKWLKQIANNGKLERRLSLGEYRRAVSWSKYLISSGAAIKGEAEEEWSADMSQLFIGNKFALGRHSRIYRGLYKQRDVAIKLISQPEEDQDLAAFLEKQFTSEVALLFRLHHPNIITFFAACKNHPVFCIITEYLAGGSLRKYLHQQEPYSLPFNLVLKFAIDIARGMQYLHSQGIIHRDLKSENLLLGEDMCVKVADFGISCLESQCGSPKGFTGTYRWMAPEMIREKAHTKKVDVYSFGIVLWELLTALTPFDNMTPEQAAFAVCQKNARPPLPSTCPLAFRRLIRQCWARNPLKRPQFDDIVAILESYAESLEQDPEFFSSYEVPSRHGISRYLPNLITSCANASQEA 354
MK+F W KQI+NNGKLERRLSLGEY+RAVSWSKYL+SSGA IKG+ EE+WSADMSQLFIGNKFA GRHSRIYRG+YKQRDVAIKLISQPEED DLAAFLEKQFTSEVALLFRL HPNIITF AACK PVFCIITEYLAGGSLRKYLHQQEPYSLP NLVLK ++DIA GMQYLHSQGI+HRDLKSENLLLGEDMCVKVADFGISCLESQCGS KGFTGTYRWMAPEMI+EK HTKKVDVYSFGIV+WELLTALTPFDNMTPEQAAFAVCQKNARPPLPSTCP+A RR I QCW+ NP KRP F++IV ILESYA SLE DPEFFSSYE H + R LP I + +AS A
Sbjct: 1 MKKFHWFKQISNNGKLERRLSLGEYKRAVSWSKYLVSSGAEIKGKGEEQWSADMSQLFIGNKFASGRHSRIYRGIYKQRDVAIKLISQPEEDGDLAAFLEKQFTSEVALLFRLRHPNIITFVAACKKPPVFCIITEYLAGGSLRKYLHQQEPYSLPLNLVLKLSLDIAHGMQYLHSQGILHRDLKSENLLLGEDMCVKVADFGISCLESQCGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVMWELLTALTPFDNMTPEQAAFAVCQKNARPPLPSTCPMALRRFINQCWSGNPDKRPHFEEIVNILESYAASLEHDPEFFSSYEPSDDHTLLRCLPTCIPARRSASLRA 354
BLAST of XM_017363174.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BGE9 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 620.157 bits (1598), Expect = 0.000e+0
Identity = 294/346 (84.97%), Postives = 314/346 (90.75%), Query Frame = 0
Match: A0A5J5BGE9 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 620.157 bits (1598), Expect = 0.000e+0
Identity = 294/346 (84.97%), Postives = 314/346 (90.75%), Query Frame = 0
Query: 1 MKRFKWLKQIANNGKLERRLSLGEYRRAVSWSKYLISSGAAIKGEAEEEWSADMSQLFIGNKFALGRHSRIYRGLYKQRDVAIKLISQPEEDQDLAAFLEKQFTSEVALLFRLHHPNIITFFAACKNHPVFCIITEYLAGGSLRKYLHQQEPYSLPFNLVLKFAIDIARGMQYLHSQGIIHRDLKSENLLLGEDMCVKVADFGISCLESQCGSPKGFTGTYRWMAPEMIREKAHTKKVDVYSFGIVLWELLTALTPFDNMTPEQAAFAVCQKNARPPLPSTCPLAFRRLIRQCWARNPLKRPQFDDIVAILESYAESLEQDPEFFSSYEVPSRHGISRYLPNLITS 346
MK+F W KQI+NNGKLERRLSLGEY+RAVSWSKYL+SSGA IKG+ E EWSADMSQLFIGNKFA GRHSRIYRG+YKQRDVAIKLISQPEED DLAAFLEKQFTSEVALLFRL HPNIITF AACK PVFCIITEYLAGGSLRKYLHQQEPYSLP +LVLK ++DIA GMQYLHSQGI+HRDLKSENLLLGEDMCVKVADFGISCLESQCGS KGFTGTYRWMAPEMI+EK HTKKVDVYSFGIVLWELLTALTPFDNMTPEQAAFAVCQKNARPPLPSTCP+AF+RLI QCW+ NP KRP FD+IV IL+SYA SLEQDP+FFSSY+ H + R LP I +
Sbjct: 1 MKKFHWFKQISNNGKLERRLSLGEYKRAVSWSKYLVSSGAEIKGKEEVEWSADMSQLFIGNKFASGRHSRIYRGIYKQRDVAIKLISQPEEDGDLAAFLEKQFTSEVALLFRLRHPNIITFVAACKKPPVFCIITEYLAGGSLRKYLHQQEPYSLPLDLVLKLSLDIAHGMQYLHSQGILHRDLKSENLLLGEDMCVKVADFGISCLESQCGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTALTPFDNMTPEQAAFAVCQKNARPPLPSTCPMAFKRLINQCWSSNPDKRPHFDEIVNILKSYAASLEQDPDFFSSYQPSDDHTLLRCLPRCIAA 346
BLAST of XM_017363174.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AHW6 ((Putative Serine/threonine-protein kinase HT1 {ECO:0000313|EMBL:MPA55894.1}) (2.7.11.1 {ECO:0000313|EMBL:MPA55894.1}))
HSP 1 Score: 619.002 bits (1595), Expect = 0.000e+0
Identity = 295/354 (83.33%), Postives = 316/354 (89.27%), Query Frame = 0
Match: A0A5B7AHW6 ((Putative Serine/threonine-protein kinase HT1 {ECO:0000313|EMBL:MPA55894.1}) (2.7.11.1 {ECO:0000313|EMBL:MPA55894.1}))
HSP 1 Score: 619.002 bits (1595), Expect = 0.000e+0
Identity = 295/354 (83.33%), Postives = 316/354 (89.27%), Query Frame = 0
Query: 1 MKRFKWLKQIANNGKLERRLSLGEYRRAVSWSKYLISSGAAIKGEAEEEWSADMSQLFIGNKFALGRHSRIYRGLYKQRDVAIKLISQPEEDQDLAAFLEKQFTSEVALLFRLHHPNIITFFAACKNHPVFCIITEYLAGGSLRKYLHQQEPYSLPFNLVLKFAIDIARGMQYLHSQGIIHRDLKSENLLLGEDMCVKVADFGISCLESQCGSPKGFTGTYRWMAPEMIREKAHTKKVDVYSFGIVLWELLTALTPFDNMTPEQAAFAVCQKNARPPLPSTCPLAFRRLIRQCWARNPLKRPQFDDIVAILESYAESLEQDPEFFSSYEVPSRHGISRYLPNLITSCANASQEA 354
MK+F W KQI+NNGKLERRLSLGEY+RAVSWSKYL+SSGA IKG+ EE+WSADMSQLFIGNKFA GRHSRIYRG+YKQRDVAIKLISQPEED DLAAFLEKQFTSEVALLFRL HPNIITF AACK PVFCIITEYLAGGSLRKYLHQQEPYSLP NLVLK ++DIA GMQYLHSQGI+HRDLKSENLLLGEDMCVKVADFGISCLESQCGS KGFTGTYRWMAPEMI+EK HTKKVDVYSFGIVLWEL TALTPFDNMTPEQAAFAVCQKNARPPLPSTCP+AFR LI +CW+ P KRP F++IV+ILES+A S EQDPEFFSSYE H + R LP I + +AS A
Sbjct: 1 MKKFHWFKQISNNGKLERRLSLGEYKRAVSWSKYLVSSGAEIKGKGEEQWSADMSQLFIGNKFASGRHSRIYRGIYKQRDVAIKLISQPEEDGDLAAFLEKQFTSEVALLFRLRHPNIITFVAACKKPPVFCIITEYLAGGSLRKYLHQQEPYSLPLNLVLKLSLDIAHGMQYLHSQGILHRDLKSENLLLGEDMCVKVADFGISCLESQCGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELFTALTPFDNMTPEQAAFAVCQKNARPPLPSTCPMAFRHLINRCWSSKPDKRPHFEEIVSILESFAASFEQDPEFFSSYEPSDDHTLLRCLPMCIAARRSASLRA 354
BLAST of XM_017363174.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AGI6 ((Putative Serine/threonine-protein kinase HT1 {ECO:0000313|EMBL:MPA55892.1}) (2.7.11.1 {ECO:0000313|EMBL:MPA55892.1}))
HSP 1 Score: 617.076 bits (1590), Expect = 0.000e+0
Identity = 297/354 (83.90%), Postives = 314/354 (88.70%), Query Frame = 0
Match: A0A5B7AGI6 ((Putative Serine/threonine-protein kinase HT1 {ECO:0000313|EMBL:MPA55892.1}) (2.7.11.1 {ECO:0000313|EMBL:MPA55892.1}))
HSP 1 Score: 617.076 bits (1590), Expect = 0.000e+0
Identity = 297/354 (83.90%), Postives = 314/354 (88.70%), Query Frame = 0
Query: 1 MKRFKWLKQIANNGKLERRLSLGEYRRAVSWSKYLISSGAAIKGEAEEEWSADMSQLFIGNKFALGRHSRIYRGLYKQRDVAIKLISQPEEDQDLAAFLEKQFTSEVALLFRLHHPNIITFFAACKNHPVFCIITEYLAGGSLRKYLHQQEPYSLPFNLVLKFAIDIARGMQYLHSQGIIHRDLKSENLLLGEDMCVKVADFGISCLESQCGSPKGFTGTYRWMAPEMIREKAHTKKVDVYSFGIVLWELLTALTPFDNMTPEQAAFAVCQKNARPPLPSTCPLAFRRLIRQCWARNPLKRPQFDDIVAILESYAESLEQDPEFFSSYEVPSRHGISRYLPNLITSCANASQEA 354
MK+F W KQI+NNGKLERRLSLGEY+RAVSWSKYLISSGA IKGE EEEWSADMSQLF+GNKFA GRHSRIYRG+YKQRDVAIKLISQPEED DLAA LEKQFTSEVALLFRL HPNIITF ACK PVFCIITEYLAGGSLRKYLHQQEPYSLP +LVLK A+DIA GMQYLHSQGI+HRDLKSENLLLGEDMCVKVADFGISCLESQCGS KGFTGTYRWMAPEMI+EK HTKKVDVYSFGIV+WELLTALTPFDNMTPEQAAFAVCQKNARPPLPSTCP+A RR I QCW+ NP KRP F++IV ILESYA SLE DPEFFSSYE H + R LP I + +AS A
Sbjct: 1 MKKFHWFKQISNNGKLERRLSLGEYKRAVSWSKYLISSGAEIKGEGEEEWSADMSQLFMGNKFASGRHSRIYRGMYKQRDVAIKLISQPEEDGDLAASLEKQFTSEVALLFRLRHPNIITFVGACKKLPVFCIITEYLAGGSLRKYLHQQEPYSLPTSLVLKLALDIACGMQYLHSQGILHRDLKSENLLLGEDMCVKVADFGISCLESQCGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVMWELLTALTPFDNMTPEQAAFAVCQKNARPPLPSTCPMALRRFINQCWSGNPDKRPHFEEIVNILESYAASLEHDPEFFSSYEPSDDHTLLRCLPTCIPARRSASLRA 354
BLAST of XM_017363174.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7FY81 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 615.92 bits (1587), Expect = 0.000e+0
Identity = 293/346 (84.68%), Postives = 310/346 (89.60%), Query Frame = 0
Match: A0A7J7FY81 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 615.92 bits (1587), Expect = 0.000e+0
Identity = 293/346 (84.68%), Postives = 310/346 (89.60%), Query Frame = 0
Query: 1 MKRFKWLKQIANNGKLERRLSLGEYRRAVSWSKYLISSGAAIKGEAEEEWSADMSQLFIGNKFALGRHSRIYRGLYKQRDVAIKLISQPEEDQDLAAFLEKQFTSEVALLFRLHHPNIITFFAACKNHPVFCIITEYLAGGSLRKYLHQQEPYSLPFNLVLKFAIDIARGMQYLHSQGIIHRDLKSENLLLGEDMCVKVADFGISCLESQCGSPKGFTGTYRWMAPEMIREKAHTKKVDVYSFGIVLWELLTALTPFDNMTPEQAAFAVCQKNARPPLPSTCPLAFRRLIRQCWARNPLKRPQFDDIVAILESYAESLEQDPEFFSSYEVPSRHGISRYLPNLITS 346
MK+F W KQI+NN KLERRLSLGEY+RAVSWSKYL+SSGA IKGE EEEWSADMSQLFIGNKFA GRHSR+YRG+YKQ DVAIKLIS PEED DLAAFLEKQFTSEVALLF LHHPNII+F AACK PVFCIITEYLAGGSLRKYLHQQEPYSLP NLVLK A+DIA GMQYLHSQGI+HRDLKSENLLLGEDMCVKVADFGISCLESQCGS KGFTGTYRWMAPEMI+EK HTKKVDVYSFGIVLWELLTALTPFDNMTPEQAAFAVCQKNARPPLPSTCP+AF+ LI QCW+ NP KRP F+ IV ILESYA SLEQDPEFFSSY+ H + LPN I +
Sbjct: 1 MKKFLWFKQISNNVKLERRLSLGEYKRAVSWSKYLVSSGAEIKGEGEEEWSADMSQLFIGNKFASGRHSRVYRGIYKQMDVAIKLISLPEEDGDLAAFLEKQFTSEVALLFHLHHPNIISFVAACKKAPVFCIITEYLAGGSLRKYLHQQEPYSLPLNLVLKLALDIAHGMQYLHSQGILHRDLKSENLLLGEDMCVKVADFGISCLESQCGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTALTPFDNMTPEQAAFAVCQKNARPPLPSTCPVAFKSLINQCWSSNPNKRPHFEKIVNILESYAVSLEQDPEFFSSYKPSDGHTLLGCLPNCIAA 346
BLAST of XM_017363174.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BJ30 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 613.994 bits (1582), Expect = 0.000e+0
Identity = 294/351 (83.76%), Postives = 313/351 (89.17%), Query Frame = 0
Match: A0A5J5BJ30 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 613.994 bits (1582), Expect = 0.000e+0
Identity = 294/351 (83.76%), Postives = 313/351 (89.17%), Query Frame = 0
Query: 1 MKRFKWLKQIANNGKLERRLSLGEYRRAVSWSKYLISSGAAIKGEAEEEWSADMSQLFIGNKFALGRHSRIYRGLYKQRDVAIKLISQPEEDQDLAAFLEKQFTSEVALLFRLHHPNIITFFAACKNHPVFCIITEYLAGGSLRKYLHQQEPYSLPFNLVLKFAIDIARGMQYLHSQGIIHRDLKSENLLLGEDMCVKVADFGISCLESQCGSPKGFTGTYRWMAPEMIREKAHTKKVDVYSFGIVLWELLTALTPFDNMTPEQAAFAVCQKNARPPLPSTCPLAFRRLIRQCWARNPLKRPQFDDIVAILESYAESLEQDPEFFSSYEVPSRHGISRYLPNLITSCANAS 351
MK+F W KQI+NNGKLERRLSLGEY+RAVSWSKYL+SSGA IKGE EE+WSADMSQLFIGNKFA GRHSRIYRG+YKQRDVAIKLISQPEED +LAA LEKQFTSEVALLFRL HPNIITF AACK PVFCIITEYLAGGSLR YLHQQEPYSLP N+VLK A+DIA GMQYLHSQGI+HRDLKSENLLLGEDMCVKVADFGISCLESQCGSPKGFT TYRWMAPEMI+EK HTKKVDVYSFGIVLWEL TALTPFDNMTPEQAAFAVCQKNARPPLPSTCP+AFR LI QCW+ NP KRP F +IV ILE+YA SLEQDPEFFSSY+ H + R LP I + +AS
Sbjct: 1 MKKFHWFKQISNNGKLERRLSLGEYKRAVSWSKYLVSSGAEIKGEGEEKWSADMSQLFIGNKFASGRHSRIYRGIYKQRDVAIKLISQPEEDGELAASLEKQFTSEVALLFRLRHPNIITFVAACKKTPVFCIITEYLAGGSLRNYLHQQEPYSLPTNIVLKLALDIACGMQYLHSQGILHRDLKSENLLLGEDMCVKVADFGISCLESQCGSPKGFTSTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELFTALTPFDNMTPEQAAFAVCQKNARPPLPSTCPMAFRHLINQCWSSNPDKRPHFGEIVNILENYAASLEQDPEFFSSYKPCDDHTLLRCLPMCIAARRSAS 351
BLAST of XM_017363174.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A061FTL2 ((Serine/threonine-protein kinase HT1 {ECO:0000313|EMBL:EOY20700.1}))
HSP 1 Score: 607.831 bits (1566), Expect = 0.000e+0
Identity = 289/346 (83.53%), Postives = 308/346 (89.02%), Query Frame = 0
Match: A0A061FTL2 ((Serine/threonine-protein kinase HT1 {ECO:0000313|EMBL:EOY20700.1}))
HSP 1 Score: 607.831 bits (1566), Expect = 0.000e+0
Identity = 289/346 (83.53%), Postives = 308/346 (89.02%), Query Frame = 0
Query: 1 MKRFKWLKQIANNGKLERRLSLGEYRRAVSWSKYLISSGAAIKGEAEEEWSADMSQLFIGNKFALGRHSRIYRGLYKQRDVAIKLISQPEEDQDLAAFLEKQFTSEVALLFRLHHPNIITFFAACKNHPVFCIITEYLAGGSLRKYLHQQEPYSLPFNLVLKFAIDIARGMQYLHSQGIIHRDLKSENLLLGEDMCVKVADFGISCLESQCGSPKGFTGTYRWMAPEMIREKAHTKKVDVYSFGIVLWELLTALTPFDNMTPEQAAFAVCQKNARPPLPSTCPLAFRRLIRQCWARNPLKRPQFDDIVAILESYAESLEQDPEFFSSYEVPSRHGISRYLPNLITS 346
MK W KQI+NN + ERRLSLGEY+RA+SWSKYL+SSGA IKGE EEEWSADMSQLFIGNKFA GRHSRIYRG+YKQRDVAIKLISQPEED +LA FLEKQF SEVALLF L HPNIITF AACK PVFCIITEYLAGGSLRKYLHQQEPYS+P NLVLK A+DIARGMQYLHS+GI+HRDLKSENLLLGEDMCVKVADFGISCLESQCGS KGFTGTYRWMAPEMI+EK HTKKVDVYSFGIVLWELLTALTPFDNMTPEQAAFAVCQKNARPPLPSTCPLAF LI +CW+ NP KRP FD+IV+ILE YAESLE+DPEFFS+Y+ HGI R LP I
Sbjct: 1 MKNLYWFKQISNNVRSERRLSLGEYKRAISWSKYLVSSGAEIKGEGEEEWSADMSQLFIGNKFASGRHSRIYRGIYKQRDVAIKLISQPEEDANLANFLEKQFISEVALLFHLRHPNIITFVAACKKPPVFCIITEYLAGGSLRKYLHQQEPYSVPLNLVLKLALDIARGMQYLHSEGILHRDLKSENLLLGEDMCVKVADFGISCLESQCGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTALTPFDNMTPEQAAFAVCQKNARPPLPSTCPLAFGHLINRCWSSNPQKRPHFDEIVSILEHYAESLEEDPEFFSTYKPSPDHGILRCLPKCIAG 346
BLAST of XM_017363174.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P5Y8R1 ((serine/threonine-protein kinase HT1-like {ECO:0000313|RefSeq:XP_022736848.1}))
HSP 1 Score: 607.446 bits (1565), Expect = 0.000e+0
Identity = 289/345 (83.77%), Postives = 310/345 (89.86%), Query Frame = 0
Match: A0A6P5Y8R1 ((serine/threonine-protein kinase HT1-like {ECO:0000313|RefSeq:XP_022736848.1}))
HSP 1 Score: 607.446 bits (1565), Expect = 0.000e+0
Identity = 289/345 (83.77%), Postives = 310/345 (89.86%), Query Frame = 0
Query: 1 MKRFKWLKQIANNGKLERRLSLGEYRRAVSWSKYLISSGAAIKGEAEEEWSADMSQLFIGNKFALGRHSRIYRGLYKQRDVAIKLISQPEEDQDLAAFLEKQFTSEVALLFRLHHPNIITFFAACKNHPVFCIITEYLAGGSLRKYLHQQEPYSLPFNLVLKFAIDIARGMQYLHSQGIIHRDLKSENLLLGEDMCVKVADFGISCLESQCGSPKGFTGTYRWMAPEMIREKAHTKKVDVYSFGIVLWELLTALTPFDNMTPEQAAFAVCQKNARPPLPSTCPLAFRRLIRQCWARNPLKRPQFDDIVAILESYAESLEQDPEFFSSYEVPSRHGISRYLPNLIT 345
MK F W KQI+NN + ERRLSLGEYRRAVSWSKYL+SSGA IKGE EEEWSADMSQLFIGNKFA GRHSRIYRG+YKQRDVAIKLISQPEED++LA +LEKQF SEVALLF L HPNIITF AACK PVFCIITEYLAGGSL+KYLHQQEPYS+P NLVLK A+DIARGMQYLHSQGI+HRDLKSENLLLGEDMCVKVADFGISCLESQCGS KGFTGTYRWMAPEMI+EK HTKKVDVYSFGIVLWELLTALTPFDNMTPEQAAFAVCQKNARP LPS+CPLAF L+ +CW+ NP KRPQFD+IV+ILESYAESLE+DPEFFS+Y+ H I R LP I
Sbjct: 1 MKNFYWFKQISNNVRSERRLSLGEYRRAVSWSKYLVSSGAEIKGEGEEEWSADMSQLFIGNKFASGRHSRIYRGIYKQRDVAIKLISQPEEDENLANYLEKQFISEVALLFHLRHPNIITFVAACKKPPVFCIITEYLAGGSLKKYLHQQEPYSVPLNLVLKLALDIARGMQYLHSQGILHRDLKSENLLLGEDMCVKVADFGISCLESQCGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTALTPFDNMTPEQAAFAVCQKNARPLLPSSCPLAFSHLVNRCWSSNPDKRPQFDEIVSILESYAESLEEDPEFFSNYKPSPDHTILRCLPKCIA 345
BLAST of XM_017363174.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PDW2 ((Serine/threonine-protein kinase {ECO:0000313|EMBL:PSR89587.1}))
HSP 1 Score: 607.446 bits (1565), Expect = 0.000e+0
Identity = 288/351 (82.05%), Postives = 313/351 (89.17%), Query Frame = 0
Match: A0A2R6PDW2 ((Serine/threonine-protein kinase {ECO:0000313|EMBL:PSR89587.1}))
HSP 1 Score: 607.446 bits (1565), Expect = 0.000e+0
Identity = 288/351 (82.05%), Postives = 313/351 (89.17%), Query Frame = 0
Query: 1 MKRFKWLKQIANNGKLERRLSLGEYRRAVSWSKYLISSGAAIKGEAEEEWSADMSQLFIGNKFALGRHSRIYRGLYKQRDVAIKLISQPEEDQDLAAFLEKQFTSEVALLFRLHHPNIITFFAACKNHPVFCIITEYLAGGSLRKYLHQQEPYSLPFNLVLKFAIDIARGMQYLHSQGIIHRDLKSENLLLGEDMCVKVADFGISCLESQCGSPKGFTGTYRWMAPEMIREKAHTKKVDVYSFGIVLWELLTALTPFDNMTPEQAAFAVCQKNARPPLPSTCPLAFRRLIRQCWARNPLKRPQFDDIVAILESYAESLEQDPEFFSSYEVPSRHGISRYLPNLITSCANAS 351
MKRF W KQI++NGKLERRLSLGEY+RA+SWSKYL+SSGAAIKG EEEWSADMSQL IGNKFA GRHSRIYRG+YKQRDVAIKLISQPEED+DLA +EKQFTSEVA LFRLHHPNIITF AACK +PVFCIITEYLAGGSLRKYLHQQEP+SLP N+VLKFA+DIA GMQYLHSQGI+HRDLKSENLLLGEDM VKVADFGISCLESQCGS KGFTGTYRWMAPEMI+EK HTKKVDVYSFGIVLWELLTALTPFDNMTPEQAAFAVC KNARPPLP +CP+AFR LI +CW+ NP KRP F++IV ILESYA SLEQDP+FFSS+E +SR LP + + AS
Sbjct: 1 MKRFHWFKQISSNGKLERRLSLGEYKRAISWSKYLVSSGAAIKGGGEEEWSADMSQLLIGNKFASGRHSRIYRGVYKQRDVAIKLISQPEEDRDLANLVEKQFTSEVASLFRLHHPNIITFVAACKKNPVFCIITEYLAGGSLRKYLHQQEPHSLPLNIVLKFALDIAHGMQYLHSQGILHRDLKSENLLLGEDMHVKVADFGISCLESQCGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTALTPFDNMTPEQAAFAVCHKNARPPLPPSCPVAFRHLINRCWSSNPNKRPHFEEIVTILESYAASLEQDPDFFSSFEPSDDRTLSRCLPKCVYARTPAS 351
BLAST of XM_017363174.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2C9ULB7 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 603.594 bits (1555), Expect = 0.000e+0
Identity = 284/354 (80.23%), Postives = 312/354 (88.14%), Query Frame = 0
Match: A0A2C9ULB7 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 603.594 bits (1555), Expect = 0.000e+0
Identity = 284/354 (80.23%), Postives = 312/354 (88.14%), Query Frame = 0
Query: 1 MKRFKWLKQIANNGKLERRLSLGEYRRAVSWSKYLISSGAAIKGEAEEEWSADMSQLFIGNKFALGRHSRIYRGLYKQRDVAIKLISQPEEDQDLAAFLEKQFTSEVALLFRLHHPNIITFFAACKNHPVFCIITEYLAGGSLRKYLHQQEPYSLPFNLVLKFAIDIARGMQYLHSQGIIHRDLKSENLLLGEDMCVKVADFGISCLESQCGSPKGFTGTYRWMAPEMIREKAHTKKVDVYSFGIVLWELLTALTPFDNMTPEQAAFAVCQKNARPPLPSTCPLAFRRLIRQCWARNPLKRPQFDDIVAILESYAESLEQDPEFFSSYEVPSRHGISRYLPNLITSCANASQEA 354
MK F W KQI+NNG+ RRLSLGEY+RA SWSKYL+SSGA IKGE E EWSADMSQLFIGNKFA GRHSRIYRG+YKQRDVAIK+ISQPEED+DLAA LEKQFTSEVALLFRL HPNI+TF AACK PVFCIITEYLAGGSLRKYLHQQEPYS+P N+VLK A+DIARGMQYLHSQG++HRDLKSENL+LGEDMCVKVADFGISCLESQCGS KGFTGTYRWMAPEMI+EK HTKKVDVYSFGIVLWELLTALTPFDNMTPEQAAFAVCQKNARPPLP TCP+AF LI +CW+ NP KRP FD+IV+ILE Y+ES+EQDP+FFS+Y+ S I R P + +AS +A
Sbjct: 1 MKNFYWFKQISNNGRSGRRLSLGEYKRAASWSKYLVSSGAEIKGEGEIEWSADMSQLFIGNKFASGRHSRIYRGIYKQRDVAIKIISQPEEDEDLAAMLEKQFTSEVALLFRLTHPNIVTFVAACKKPPVFCIITEYLAGGSLRKYLHQQEPYSVPLNVVLKLALDIARGMQYLHSQGVLHRDLKSENLILGEDMCVKVADFGISCLESQCGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTALTPFDNMTPEQAAFAVCQKNARPPLPPTCPVAFSHLINRCWSSNPDKRPHFDEIVSILERYSESVEQDPQFFSNYKPSSEQIILRCFPKCMAGHGSASVKA 354
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7ALE5 | E-Value: 0.000e+0, PID: 83.90 | (Putative Serine/threonine-protein kinase HT1 {ECO... [more] |
| A0A5J5BGE9 | E-Value: 0.000e+0, PID: 84.97 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A5B7AHW6 | E-Value: 0.000e+0, PID: 83.33 | (Putative Serine/threonine-protein kinase HT1 {ECO... [more] |
| A0A5B7AGI6 | E-Value: 0.000e+0, PID: 83.90 | (Putative Serine/threonine-protein kinase HT1 {ECO... [more] |
| A0A7J7FY81 | E-Value: 0.000e+0, PID: 84.68 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A5J5BJ30 | E-Value: 0.000e+0, PID: 83.76 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A061FTL2 | E-Value: 0.000e+0, PID: 83.53 | (Serine/threonine-protein kinase HT1 {ECO:0000313|... [more] |
| A0A6P5Y8R1 | E-Value: 0.000e+0, PID: 83.77 | (serine/threonine-protein kinase HT1-like {ECO:000... [more] |
| A0A2R6PDW2 | E-Value: 0.000e+0, PID: 82.05 | (Serine/threonine-protein kinase {ECO:0000313|EMBL... [more] |
| A0A2C9ULB7 | E-Value: 0.000e+0, PID: 80.23 | Protein kinase domain-containing protein {ECO:0000... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |