XM_017364037.1

Resource Type: 
Polypeptide
Name: 
XM_017364037.1
Identifier: 
XM_017364037.1-protein
Sequence: 
MGWLTKILKGSSHRISEGQYHGKYHEEKFWEGPSNSVDAWSDFEQEDIDH
AIALSLAEEDLKGKKVVEVKIESEPESESEPEPEPEPEPEPEPEPEPEPE
EEPEPHSELEKVEKPKMDVLLEEDEQLAKAIQESLYIDSTPQYDFGNLFQ
PYPYLYPPGFRICAGCNSEIGHGRFLSCMGGVWHPECFRCHSCNIPISDY
EFSMSENRPFHKSCYKERHHPKCDVCKNFIPTNAAGLIEYRAHPFWEQKY
CPSHEHDMTPRCCSCERMEPRDTRYLLLDDGRKLCLECLDSSIMDTHECQ
PLYLEIQDFYEGLLMKVEQQIPLLLVERQALNEAMEGEKHGHHHMPETRG
LCLSEEQTISTISRRPKIGAGYRIIDMITEPYRLIRECEVTAILILYSLP
RLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSEIMAGS
GSNMASTSSASSSSSAPPSSKKGKRSDFEKKLGEFFKHQIESDTSAAYGD
GFREGNKAVLKYGLRRTLDHIRLTGCFP
Sequence Length: 
528
Sequence Checksum: 
8bd767b0664548a7da78f57309a36a6a
View location in JBrowse: 
DCARv2_Chr7:34751786..34756043+
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017364037.1, derives from mRNA, XM_017364037.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017364037.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017364037.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7ASS5 (LIM zinc-binding domain-containing protein {ECO:0000259|PROSITE:PS50023})

HSP 1 Score: 820.846 bits (2119), Expect = 0.000e+0
Identity = 409/528 (77.46%), Postives = 444/528 (84.09%), Query Frame = 0
 
Query:    1 MGWLTKILKGSSHRISEGQYHGKYHEEKFWEGPSNSVDAWSDFEQEDIDHAIALSLAEEDLKGKKVVEVKIESEPESESEPEPEPEPEPEPEPEPEPEPEEEPEPHSELEKVEKPKMDVLLEEDEQLAKAIQESLYIDSTPQYDFGNLFQPYPYLYPPGFRICAGCNSEIGHGRFLSCMGGVWHPECFRCHSCNIPISDYEFSMSENRPFHKSCYKERHHPKCDVCKNFIPTNAAGLIEYRAHPFWEQKYCPSHEHDMTPRCCSCERMEPRDTRYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQDFYEGLLMKVEQQIPLLLVERQALNEAMEGEKHGHHHMPETRGLCLSEEQTISTISRRPKIGAGYRIIDMITEPYRLIRECEVTAILILYSLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSEIMAGSGSNMASTSSASSSSSAPPSSKKGKRSDFEKKLGEFFKHQIESDTSAAYGDGFREGNKAVLKYGLRRTLDHIRLTGCFP 528
            MGW TKILKGSSH+ISEGQY GKY +++ W GPS S DAWSDFE EDIDHAIA SL+EED KGKKV++                           +    E+ E H              LE+DEQLAKA+QESL ++  PQYD+ NLF PYPY YP G+RICAGCN+EI HGR L+CMG  WHPECFRCH+CN+PISD EFSMSENRP+HKSCYKE HHP+CDVCKNFIPTNAAGLIEYRAHPFW QKYCPSHEHD TPRCCSCERMEPRDTRYL+LDDGRKLCLECLDS+IMDTHECQPLYLEIQ+FYEGL MKVEQQIPLLLVERQALNEAMEGEK+GHHH+PETRGLCLSEEQTISTISRRPKIGAGYRIIDM TEPY+LIR CEVTAILILY LPRLL GSIL HEMMHAWLRLKGYPNLSP+VEEGICQVLAHMWLDSEI+AGSGSN+ASTSS+SSSSS   SSKKGKRS FEKKLG+FFKHQIESDTSAAYGDGFR GN+AVLKYGL+RTLDHI+LTG FP
Sbjct:    1 MGWFTKILKGSSHKISEGQYLGKYGDDRIWAGPSASADAWSDFENEDIDHAIAKSLSEEDQKGKKVID---------------------------DESHLEDDESH--------------LEDDEQLAKALQESLNMEPAPQYDYENLFPPYPYFYPAGYRICAGCNTEIDHGRSLNCMGAFWHPECFRCHACNLPISDREFSMSENRPYHKSCYKEHHHPRCDVCKNFIPTNAAGLIEYRAHPFWLQKYCPSHEHDGTPRCCSCERMEPRDTRYLVLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQIPLLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTISTISRRPKIGAGYRIIDMFTEPYKLIRRCEVTAILILYGLPRLLVGSILTHEMMHAWLRLKGYPNLSPDVEEGICQVLAHMWLDSEIIAGSGSNVASTSSSSSSSSDSSSSKKGKRSQFEKKLGDFFKHQIESDTSAAYGDGFRAGNQAVLKYGLKRTLDHIQLTGVFP 487
[Close]
BLAST of XM_017364037.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6TLF0 ((protein DA1-related 1-like {ECO:0000313|RefSeq:XP_027078386.1}))

HSP 1 Score: 814.683 bits (2103), Expect = 0.000e+0
Identity = 410/534 (76.78%), Postives = 451/534 (84.46%), Query Frame = 0
 
Query:    1 MGWLTKILKGSSHRISEGQYHGKYHEEKFWEGPSNSVDAWSDFEQEDIDHAIALSLAEEDLKGKKVVEVKIESEPESESEPEPEPEPEPEPEPEPEPEPEEEPEPHSELEKVEKPKMDVLLEEDEQLAKAIQESLYIDSTP---QYDFGNLFQPYPYLYPPGFRICAGCNSEIGHGRFLSCMGGVWHPECFRCHSCNIPISDYEFSMSENRPFHKSCYKERHHPKCDVCKNFIPTNAAGLIEYRAHPFWEQKYCPSHEHDMTPRCCSCERMEPRDTRYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQDFYEGLLMKVEQQIPLLLVERQALNEAMEGEKHGHHHMPETRGLCLSEEQTISTISRRPKIGAGYRIIDMITEPYRLIRECEVTAILILYSLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSEIMAGSG---SNMASTSSASSSSSAPPSSKKGKRSDFEKKLGEFFKHQIESDTSAAYGDGFREGNKAVLKYGLRRTLDHIRLTGCFP 528
            MGWLTKI KGSSH++ EGQYHGKY ++  WEGPS SVD WSDF+ E+IDHAIALSLA+ED +     E K   E +  +  E + +  PE E + + +   E EP+              LEEDEQLAKA+QESL ++S P   QYD+G+ F PY + YP G+RICAGC +EIGHGRFLSCMG  WHPECFRCH+C +PISDYEFSMSENRP+HKSCYKE HHPKCDVCKNFIPTNAAGLIEYRAHPFW QKYCPSHEHD TPRCCSCERMEP D RYL+LDDGRKLCLECLDS+IMDT+ECQPLYLEIQDFYEGL MKVEQQ+PLLLVERQALNEAMEGEKHGHHHMPETRGLCLSEEQT+STI RRP+IG GYRIIDM TEPYRLIR CEVTAILILY LPRLLTGSILAHEMMHAWLRLKGY NLSPEVEEGICQVLAHMWLDSEI+AGSG   ++ +S+SS++SSSS+  SSKKGKRS FEKKLGEFFKHQIESDTS AYGDGFREGNKAVLKYGLRRTLDHIRLTGCFP
Sbjct:   38 MGWLTKIFKGSSHKLWEGQYHGKYEDDAIWEGPSTSVDVWSDFDNEEIDHAIALSLADEDQRAVAEEEQKASDEEDQRAVAEEDHQEAPE-EKDHKGKKVIEDEPN--------------LEEDEQLAKALQESLNVESPPSPPQYDYGSFFPPYQFFYPSGYRICAGCKAEIGHGRFLSCMGATWHPECFRCHACQLPISDYEFSMSENRPYHKSCYKELHHPKCDVCKNFIPTNAAGLIEYRAHPFWLQKYCPSHEHDGTPRCCSCERMEPVDARYLILDDGRKLCLECLDSAIMDTNECQPLYLEIQDFYEGLNMKVEQQVPLLLVERQALNEAMEGEKHGHHHMPETRGLCLSEEQTVSTILRRPRIG-GYRIIDMFTEPYRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLRLKGYSNLSPEVEEGICQVLAHMWLDSEIIAGSGSNVASTSSSSSSASSSSSSNSSKKGKRSQFEKKLGEFFKHQIESDTSVAYGDGFREGNKAVLKYGLRRTLDHIRLTGCFP 555
[Close]
BLAST of XM_017364037.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068U2L7 (LIM zinc-binding domain-containing protein {ECO:0000259|PROSITE:PS50023})

HSP 1 Score: 809.675 bits (2090), Expect = 0.000e+0
Identity = 407/534 (76.22%), Postives = 449/534 (84.08%), Query Frame = 0
 
Query:    1 MGWLTKILKGSSHRISEGQYHGKYHEEKFWEGPSNSVDAWSDFEQEDIDHAIALSLAEEDLKGKKVVEVKIESEPESESEPEPEPEPEPEPEPEPEPEPEEEPEPHSELEKVEKPKMDVLLEEDEQLAKAIQESLYIDSTP---QYDFGNLFQPYPYLYPPGFRICAGCNSEIGHGRFLSCMGGVWHPECFRCHSCNIPISDYEFSMSENRPFHKSCYKERHHPKCDVCKNFIPTNAAGLIEYRAHPFWEQKYCPSHEHDMTPRCCSCERMEPRDTRYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQDFYEGLLMKVEQQIPLLLVERQALNEAMEGEKHGHHHMPETRGLCLSEEQTISTISRRPKIGAGYRIIDMITEPYRLIRECEVTAILILYSLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSEIMAGSG---SNMASTSSASSSSSAPPSSKKGKRSDFEKKLGEFFKHQIESDTSAAYGDGFREGNKAVLKYGLRRTLDHIRLTGCFP 528
            MGWLTKI KGSSH++ EGQYHGKY ++  WEGPS SVD WSDF+ E+IDHAIALSLA+ED +     E K   E +  +  E + +  PE E + + +   E EP+              LEEDEQLAKA+QESL ++S P   +YD+G+ F PY + YP G+RICAGC +EIGHGRFLSCMG  WHPECFRCH+C +PISDYEFSMSENRP+HKSCYKE HHPKCDVCKNFIPTNAAGLIEYRAHPFW QKYCPSHEHD TPRCCSCERMEP D RYL+LDDGRKLCLECLDS+IMDT+ECQPLYLEIQDFYEGL MKVEQQ+PLLLVERQALNEAMEGEKHGHHHMPETRGLCLSEEQT+STI RRP+IG GYRIIDM TEPYRLIR CEVTAILILY LPRLLTGSILAHEMMHAWLRLKGY NLSPEVEEGICQVLAHMWLDSEI+AGSG   ++ +S+SS++S SS+  SSKKGKRS FEKKLGEFFKHQIESDTS AYGDGFREGNKAVLKYGLRRTLDHIRLT CFP
Sbjct:    1 MGWLTKIFKGSSHKLWEGQYHGKYEDDAIWEGPSTSVDVWSDFDNEEIDHAIALSLADEDQRAVAEEEQKASDEEDQRAVAEEDHQEAPE-EKDHKGKKVIEDEPN--------------LEEDEQLAKALQESLNVESPPSPPRYDYGSFFPPYQFFYPSGYRICAGCKAEIGHGRFLSCMGATWHPECFRCHACQLPISDYEFSMSENRPYHKSCYKELHHPKCDVCKNFIPTNAAGLIEYRAHPFWLQKYCPSHEHDGTPRCCSCERMEPVDARYLILDDGRKLCLECLDSAIMDTNECQPLYLEIQDFYEGLNMKVEQQVPLLLVERQALNEAMEGEKHGHHHMPETRGLCLSEEQTVSTILRRPRIG-GYRIIDMFTEPYRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLRLKGYSNLSPEVEEGICQVLAHMWLDSEIIAGSGSNVASTSSSSSSASPSSSSNSSKKGKRSQFEKKLGEFFKHQIESDTSVAYGDGFREGNKAVLKYGLRRTLDHIRLTECFP 518
[Close]
BLAST of XM_017364037.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7ATH8 (LIM zinc-binding domain-containing protein {ECO:0000259|PROSITE:PS50023})

HSP 1 Score: 794.267 bits (2050), Expect = 0.000e+0
Identity = 407/535 (76.07%), Postives = 442/535 (82.62%), Query Frame = 0
 
Query:    1 MGWLTKILKGSSHRISEGQYHGKYHEE---KFWEGPSNSVDAWSDFEQEDIDHAIALSLAEEDLKGKKVVEVKIESEPESESEPEPEPEPEPEPEPEPEPEPEEEPEPHSELEKVEKPKMDVLLEEDEQLAKAIQESLYIDSTPQYDFGNLFQPYPYLYPPGFRICAGCNSEIGHGRFLSCMGGVWHPECFRCHSCNIPISDYEFSMSENRPFHKSCYKERHHPKCDVCKNFIPTNAAGLIEYRAHPFWEQKYCPSHEHDMTPRCCSCERMEPRDTRYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQDFYEGLLMKVEQQIPLLLVERQALNEAMEGEKHGHHHMPETRGLCLSEEQTISTISRRPKIGAGYRIIDMITEPYRLIRECEVTAILILYSLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSEIMA----GSGSNMASTSSASSSSSAPPSSKKGKRSDFEKKLGEFFKHQIESDTSAAYGDGFREGNKAVLKYGLRRTLDHIRLTGCFP 528
            M W TKILKGSSH+ISEGQYHGKY ++   + W+GP  S DAWSDFE+EDIDHAIALSLAEED KGKKV++                                   EPH              LEEDEQLAKA+ ESL ++S P+YD+GNL  P PY YP G RICA CNSEIGHGRFL+CMG VWHPECFRCH+CN+PISD EFSMSEN P+HKSCYKE+HHP+CDVCKNFIPTNAAGLIEYRAHPFW QKYCPSHEHD TPRCCSCERMEPRDTRYL+LDDGRKLCLECLDS+IMDTHECQPLYLEIQ+FYEGL MKVEQQIPLLLVERQALNEAMEGEK+GHHH+PETRGLCLSEEQTISTI RRP+IGAG RIIDM TEPYRLIR CEVTAILIL+ LPRLLTGSILAHEMMHAWLRL GYPNLSP+VEEGICQVLAHMWL+SEI+A    GSG N+ASTSS+SSSSS   SSKKGKRS FEKKLG+FFKHQIESDTSAAYGDGFR GN+AVLKYGL+RTLDHI+LTG FP
Sbjct:    1 MDWFTKILKGSSHKISEGQYHGKYGDDGDDRTWDGPCTSADAWSDFEKEDIDHAIALSLAEEDQKGKKVID----------------------------------NEPH--------------LEEDEQLAKALHESLNMESPPRYDYGNLSPPNPYFYPAGHRICARCNSEIGHGRFLNCMGAVWHPECFRCHACNLPISDLEFSMSENHPYHKSCYKEQHHPRCDVCKNFIPTNAAGLIEYRAHPFWLQKYCPSHEHDGTPRCCSCERMEPRDTRYLVLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQIPLLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTISTILRRPRIGAGNRIIDMFTEPYRLIRRCEVTAILILFGLPRLLTGSILAHEMMHAWLRLAGYPNLSPDVEEGICQVLAHMWLESEIVAGSGSGSGGNVASTSSSSSSSSDSSSSKKGKRSQFEKKLGDFFKHQIESDTSAAYGDGFRAGNQAVLKYGLKRTLDHIQLTGVFP 487
[Close]
BLAST of XM_017364037.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6S7M9Y3 (LIM zinc-binding domain-containing protein {ECO:0000259|PROSITE:PS50023})

HSP 1 Score: 791.186 bits (2042), Expect = 0.000e+0
Identity = 412/543 (75.87%), Postives = 446/543 (82.14%), Query Frame = 0
 
Query:    1 MGWLTKILKGSS--HRISEGQYHGKYHEEKFWEGPSNSVDAWSDFEQEDIDHAIALSLAEEDLKG--------KKVVEVKIESEPESESEPEPEPEPEPEPEPEPEPEPEEEPEPHSELEKVEKP-KMDVLLEEDEQLAKAIQESLYID--STPQYDFGNLFQPYPYLYPPGFRICAGCNSEIGHGRFLSCMGGVWHPECFRCHSCNIPISDYEFSMSENRPFHKSCYKERHHPKCDVCKNFIPTNAAGLIEYRAHPFWEQKYCPSHEHDMTPRCCSCERMEPRDTRYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQDFYEGLLMKVEQQIPLLLVERQALNEAMEGEKHGHHHMPETRGLCLSEEQTISTISRRPKIGAGYRIIDMITEPYRLIRECEVTAILILYSLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSEIMAGSGSNMA--STSSASSSSSAPPSSKKGKRSDFEKKLGEFFKHQIESDTSAAYGDGFREGNKAVLKYGLRRTLDHIRLTGCFP 528
            MGWLTKILKGSS  HRISEG+YH +Y  E+ WE P ++ DA SDF+QE+ID AIA SL EED +         KK     +  E  S S  E E   +    PEPE   +    P  E +K +K    D  LEEDEQLA AIQESL I+  S P+   G+LF   P  +P  +RICAGCN EIGHGRFLSCMGGVWHPECFRCH+CNIPISDYEFSMS+NRPFHKSCYKE HHPKCDVCKNFIPTN AGLIEYRAHPFW QKYCP HEHD TPRCCSCERMEPRDT+YLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQDFYEGL MK+EQQ+PLLLVERQALNEAMEGEKHGHHHMPETRGLCLSEEQTISTI RRP++GAG RIIDM TEPY+L+R+CEVTAILILYSLPRLLTGSILAHEMMHAWLRLKGY NL P+VEEGICQVLAHMWLDSEIMAGSG   A  S+SS+SSSSS P SSKKGKRS FEK+LGEFFKHQIESDTSAAYGDGFREGNKAVLKYGLR TL+H+RLTG FP
Sbjct:   40 MGWLTKILKGSSSSHRISEGRYHDRYENEEIWEEPPSTEDALSDFDQEEIDRAIAFSLVEEDERSALSLVEDDKKSTRSSVHEEEGSVSSLE-EDHNDAVSSPEPEVRNKGSNSPSQEDQKGKKVIDEDPHLEEDEQLAMAIQESLNINMNSPPRNSHGSLFPRLPSFFPSVYRICAGCNGEIGHGRFLSCMGGVWHPECFRCHACNIPISDYEFSMSDNRPFHKSCYKEHHHPKCDVCKNFIPTNGAGLIEYRAHPFWLQKYCPGHEHDGTPRCCSCERMEPRDTKYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQDFYEGLNMKIEQQVPLLLVERQALNEAMEGEKHGHHHMPETRGLCLSEEQTISTIIRRPRVGAG-RIIDMFTEPYKLVRKCEVTAILILYSLPRLLTGSILAHEMMHAWLRLKGYSNLPPDVEEGICQVLAHMWLDSEIMAGSGGTNASSSSSSSSSSSSVPVSSKKGKRSQFEKQLGEFFKHQIESDTSAAYGDGFREGNKAVLKYGLRSTLEHVRLTGRFP 580
[Close]
BLAST of XM_017364037.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2I4FCP5 ((protein DA1-related 1 {ECO:0000313|RefSeq:XP_018829423.1, ECO:0000313|RefSeq:XP_018829424.1}))

HSP 1 Score: 789.645 bits (2038), Expect = 0.000e+0
Identity = 401/532 (75.38%), Postives = 452/532 (84.96%), Query Frame = 0
 
Query:    1 MGWLTKILKGSSHRISEGQYHGKYHEEKFWEGPSNSVDAWSDFEQEDIDHAIALSLAEEDLKGKKVVEVKIESEPESESEPEPEPEPEPEPEPEPEPEPEEEPEPHSELEKVEKPKMDVLLEEDEQLAKAIQESLYIDSTPQYDFGNLFQPYPYLYPPGFRICAGCNSEIGHGRFLSCMGGVWHPECFRCHSCNIPISDYEFSMSENRPFHKSCYKERHHPKCDVCKNFIPTNAAGLIEYRAHPFWEQKYCPSHEHDMTPRCCSCERMEPRDTRYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQDFYEGLLMKVEQQIPLLLVERQALNEAMEGEKHGHHHMPETRGLCLSEEQTISTISRRPKIGAGYRIIDMITEPYRLIRECEVTAILILYSLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSEI----MAGSGSNMASTSSASSSSSAPPSSKKGKRSDFEKKLGEFFKHQIESDTSAAYGDGFREGNKAVLKYGLRRTLDHIRLTGCFP 528
            MGWLTKILKGSS++   GQYHGKYHEE+ W+   NSVD  +D E+E+ID AIALSLAEED KGKKV++   +SE E E     +PE     E E   +PEE+       E V K    V LEEDEQLAKA+QES+ ++S P+YD  N+FQPYP+    G+RICAGCN+EIGHGRFLSCMG VWHPECFRC +CN PI+DYE+SMS N P+HKSC+KE++HP+CDVCKNFIPTN+AGLIEYRAHPFW QKYCPSHE D TPRCCSCERMEPRDTRYLLLDDGRKLCLECLDS+IMDTHECQPLYLEIQ+FYEGL MKVEQQ+P+LLVERQALNEAMEGEK+GHHH+PETRGLCLSEEQT++TI RRP+IGAGYRIIDMITEPYRL R CEVTAIL+LY LPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSEI     +   S+ +S+ S+SSSSS+  SSKKGKRSDFEKKLGEFFKHQIESDTS+AYGDGFR GN+AVLKYGL+RTLDHIR+TG FP
Sbjct:    1 MGWLTKILKGSSYK---GQYHGKYHEERNWDEARNSVDELTDIEKEEIDCAIALSLAEEDHKGKKVIDDDSQSE-EDEHLARAQPE-----EDEHLAQPEED-------EHVAK----VQLEEDEQLAKALQESMNVESPPRYDSRNIFQPYPFFSSGGYRICAGCNTEIGHGRFLSCMGAVWHPECFRCRACNQPITDYEYSMSGNHPYHKSCFKEQNHPRCDVCKNFIPTNSAGLIEYRAHPFWLQKYCPSHERDRTPRCCSCERMEPRDTRYLLLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQVPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTILRRPRIGAGYRIIDMITEPYRLSRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSEIYSVSGSDVASSSSSSPSSSSSSSSNTSSKKGKRSDFEKKLGEFFKHQIESDTSSAYGDGFRLGNQAVLKYGLKRTLDHIRMTGSFP 512
[Close]
BLAST of XM_017364037.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6S7MA52 (LIM zinc-binding domain-containing protein {ECO:0000259|PROSITE:PS50023})

HSP 1 Score: 788.875 bits (2036), Expect = 0.000e+0
Identity = 412/543 (75.87%), Postives = 446/543 (82.14%), Query Frame = 0
 
Query:    1 MGWLTKILKGSS--HRISEGQYHGKYHEEKFWEGPSNSVDAWSDFEQEDIDHAIALSLAEEDLKG--------KKVVEVKIESEPESESEPEPEPEPEPEPEPEPEPEPEEEPEPHSELEKVEKP-KMDVLLEEDEQLAKAIQESLYID--STPQYDFGNLFQPYPYLYPPGFRICAGCNSEIGHGRFLSCMGGVWHPECFRCHSCNIPISDYEFSMSENRPFHKSCYKERHHPKCDVCKNFIPTNAAGLIEYRAHPFWEQKYCPSHEHDMTPRCCSCERMEPRDTRYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQDFYEGLLMKVEQQIPLLLVERQALNEAMEGEKHGHHHMPETRGLCLSEEQTISTISRRPKIGAGYRIIDMITEPYRLIRECEVTAILILYSLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSEIMAGSGSNMA--STSSASSSSSAPPSSKKGKRSDFEKKLGEFFKHQIESDTSAAYGDGFREGNKAVLKYGLRRTLDHIRLTGCFP 528
            MGWLTKILKGSS  HRISEG+YH +Y  E+ WE P ++ DA SDF+QE+ID AIA SL EED +         KK     +  E  S S  E E   +    PEPE   +    P  E +K +K    D  LEEDEQLA AIQESL I+  S P+   G+LF   P  +P  +RICAGCN EIGHGRFLSCMGGVWHPECFRCH+CNIPISDYEFSMS+NRPFHKSCYKE HHPKCDVCKNFIPTN AGLIEYRAHPFW QKYCP HEHD TPRCCSCERMEPRDT+YLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQDFYEGL MK+EQQ+PLLLVERQALNEAMEGEKHGHHHMPETRGLCLSEEQTISTI RRP++GAG RIIDM TEPY+L+R+CEVTAILILYSLPRLLTGSILAHEMMHAWLRLKGY NL P+VEEGICQVLAHMWLDSEIMAGSG   A  S+SS+SSSSS P SSKKGKRS FEK+LGEFFKHQIESDTSAAYGDGFREGNKAVLKYGLR TL+H+RLTG FP
Sbjct:    1 MGWLTKILKGSSSSHRISEGRYHDRYENEEIWEEPPSTEDALSDFDQEEIDRAIAFSLVEEDERSALSLVEDDKKSTRSSVHEEEGSVSSLE-EDHNDAVSSPEPEVRNKGSNSPSQEDQKGKKVIDEDPHLEEDEQLAMAIQESLNINMNSPPRNSHGSLFPRLPSFFPSVYRICAGCNGEIGHGRFLSCMGGVWHPECFRCHACNIPISDYEFSMSDNRPFHKSCYKEHHHPKCDVCKNFIPTNGAGLIEYRAHPFWLQKYCPGHEHDGTPRCCSCERMEPRDTKYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQDFYEGLNMKIEQQVPLLLVERQALNEAMEGEKHGHHHMPETRGLCLSEEQTISTIIRRPRVGAG-RIIDMFTEPYKLVRKCEVTAILILYSLPRLLTGSILAHEMMHAWLRLKGYSNLPPDVEEGICQVLAHMWLDSEIMAGSGGTNASSSSSSSSSSSSVPVSSKKGKRSQFEKQLGEFFKHQIESDTSAAYGDGFREGNKAVLKYGLRSTLEHVRLTGRFP 541
[Close]
BLAST of XM_017364037.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4DH51 (LIM zinc-binding domain-containing protein {ECO:0000259|PROSITE:PS50023})

HSP 1 Score: 786.178 bits (2029), Expect = 0.000e+0
Identity = 400/536 (74.63%), Postives = 436/536 (81.34%), Query Frame = 0
 
Query:    1 MGWLTKILKGSSH--RISEGQYHGKYHEEKFWEGPSNSVDAWSDFEQEDIDHAIALSLAEEDLKGKKVVEVKIESEPESESEPEPEPEPEPEPEPEPEPEPEEEPEPHSELEKVEKPKMDVLLEEDEQLAKAIQESLYIDSTPQYDFGNLFQPYPYLYPPGFRICAGCNSEIGHGRFLSCMGGVWHPECFRCHSCNIPISDYEFSMSENRPFHKSCYKERHHPKCDVCKNFIPTNAAGLIEYRAHPFWEQKYCPSHEHDMTPRCCSCERMEPRDTRYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQDFYEGLLMKVEQQIPLLLVERQALNEAMEGEKHGHHHMPETRGLCLSEEQTISTISRRPKIGAGYRIIDMITEPYRLIRECEVTAILILYSLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSEIMAGSGSNMASTS------SASSSSSAPPSSKKGKRSDFEKKLGEFFKHQIESDTSAAYGDGFREGNKAVLKYGLRRTLDHIRLTGCFP 528
            MGWLTK LKGSSH  +ISEGQYHGKY EE  W+GPS +  AWSD E EDID AIA+SL+EED KGKKV++                                                 D  LEEDEQLAKA+QES+ +DS P+YD+G+LF PYPY  P G+RICAGCN+EIGHGRFLSCMGGVWHPECF C++CN+PISDYEFSMSENRP+HKSCYKE+HHP+CDVC NFIPTN AGLIEYRAHPFW QKYCPSHE D TPRCCSCERMEP DT YLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQDFYEGL MKVEQQ+PLLLVERQALNEAMEGEK+GHHH+PETRGLCLSEEQT+STI RRP+IG G RIIDM TEPYRL R CEVTAILILY LPRLLTGSILAHEMMHAWLRLKGY NLSP+VEEGICQVLAHMWLDSEIMAGSG + ++T+      S+SSSSS+  SSKKGKRS+FEKKLG FFKHQIESDTSAAYGDGFR G++AVLKYGLRRTLDHIRLTG FP
Sbjct:    1 MGWLTKFLKGSSHNHKISEGQYHGKYEEEGIWDGPSPAA-AWSDSENEDIDRAIAISLSEEDQKGKKVID------------------------------------------------NDSHLEEDEQLAKALQESMKMDSPPRYDYGSLFPPYPYFNPSGYRICAGCNAEIGHGRFLSCMGGVWHPECFCCNACNMPISDYEFSMSENRPYHKSCYKEKHHPRCDVCNNFIPTNTAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPTDTSYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQDFYEGLNMKVEQQVPLLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVSTILRRPRIG-GSRIIDMFTEPYRLTRRCEVTAILILYGLPRLLTGSILAHEMMHAWLRLKGYRNLSPDVEEGICQVLAHMWLDSEIMAGSGPSGSNTASTSSSSSSSSSSSSSSSSKKGKRSEFEKKLGAFFKHQIESDTSAAYGDGFRAGDQAVLKYGLRRTLDHIRLTGSFP 486
[Close]
BLAST of XM_017364037.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0G2UNZ8 ((DA-related 1 protein 4 {ECO:0000313|EMBL:AKI32355.1}) (Fragment))

HSP 1 Score: 785.793 bits (2028), Expect = 0.000e+0
Identity = 386/546 (70.70%), Postives = 451/546 (82.60%), Query Frame = 0
 
Query:    1 MGWLTKILKGSSHRISEGQYHGKYHEEKFWEGPSNSVDAWSDFEQEDIDHAIALSLAEEDLKGKKVVEVKIESEPESESEPEPEPEPEPEPEPEPEPEPEEEPEPHSELEKVEKPKMD---------------VLLEEDEQLAKAIQESLYIDSTPQYDFGNLFQPYPYLYPPGFRICAGCNSEIGHGRFLSCMGGVWHPECFRCHSCNIPISDYEFSMSENRPFHKSCYKERHHPKCDVCKNFIPTNAAGLIEYRAHPFWEQKYCPSHEHDMTPRCCSCERMEPRDTRYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQDFYEGLLMKVEQQIPLLLVERQALNEAMEGEKHGHHHMPETRGLCLSEEQTISTISRRPKIGAGYRIIDMITEPYRLIRECEVTAILILYSLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSEIMAGSGSNMA---STSSASSSSSAPPSSKKGKRSDFEKKLGEFFKHQIESDTSAAYGDGFREGNKAVLKYGLRRTLDHIRLTGCFP 528
            MGW TK+LKGS H+I  GQYHGKY E++ W+   +S+D  +D E+EDID AIALSL+EED KGKKVV    +SE E   + + + E E   +   + +         E E++ K + D                 LEEDEQLA+AIQESL I S P+YD  +    +P+L+PPG+RICAGC +EIG GRFLSCMGGVWHPECF CH+C++PI+DYEFSMS NRP+HK+CY+E+HHP+CDVCKNFIPTN++GLIEYRAHPFW QKYCPSHE D TPRCCSCERME RDT+YLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQ+FYEGL MK+EQQIP+LLVERQALNEAMEGEK+GHHH+PETRGLCLSEEQT++TISRRP+IGAGYR IDMITEPYRLIR CEVTAIL+LY LPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWL+SE+ +G+G++ A   ++SS+SSS S+  S+KKGKRSDFEKKLGEFFKHQIESDTS+AYGDGFR GN+A+LKYGL+RTLDHI +TG FP
Sbjct:    1 MGWFTKLLKGSDHKILRGQYHGKYGEDRIWDNHHSSMDDLTDIEKEDIDRAIALSLSEEDHKGKKVVHYDSQSEDEELCKIDDDEEDEHLVKVHLDEDERLAKIQQQEEERLAKTQQDERLAKIQQEDERLAKAQLEEDEQLARAIQESLKIGSPPRYDNDSSILSFPHLFPPGYRICAGCKTEIGQGRFLSCMGGVWHPECFCCHACHLPITDYEFSMSSNRPYHKACYREKHHPRCDVCKNFIPTNSSGLIEYRAHPFWLQKYCPSHELDGTPRCCSCERMESRDTKYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQEFYEGLNMKLEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTISRRPRIGAGYRAIDMITEPYRLIRHCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLESELYSGTGNDGASSSASSSSSSSPSSSVSTKKGKRSDFEKKLGEFFKHQIESDTSSAYGDGFRLGNQAMLKYGLKRTLDHIHMTGSFP 546
[Close]
BLAST of XM_017364037.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0G2UMG5 ((DA-related 1 protein 4 {ECO:0000313|EMBL:AKI32344.1}) (Fragment))

HSP 1 Score: 785.793 bits (2028), Expect = 0.000e+0
Identity = 386/546 (70.70%), Postives = 451/546 (82.60%), Query Frame = 0
 
Query:    1 MGWLTKILKGSSHRISEGQYHGKYHEEKFWEGPSNSVDAWSDFEQEDIDHAIALSLAEEDLKGKKVVEVKIESEPESESEPEPEPEPEPEPEPEPEPEPEEEPEPHSELEKVEKPKMD---------------VLLEEDEQLAKAIQESLYIDSTPQYDFGNLFQPYPYLYPPGFRICAGCNSEIGHGRFLSCMGGVWHPECFRCHSCNIPISDYEFSMSENRPFHKSCYKERHHPKCDVCKNFIPTNAAGLIEYRAHPFWEQKYCPSHEHDMTPRCCSCERMEPRDTRYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQDFYEGLLMKVEQQIPLLLVERQALNEAMEGEKHGHHHMPETRGLCLSEEQTISTISRRPKIGAGYRIIDMITEPYRLIRECEVTAILILYSLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSEIMAGSGSNMA---STSSASSSSSAPPSSKKGKRSDFEKKLGEFFKHQIESDTSAAYGDGFREGNKAVLKYGLRRTLDHIRLTGCFP 528
            MGW TK+LKGS H+I  GQYHGKY E++ W+   +S+D  +D E+EDID AIALSL+EED KGKKVV    +SE E   + + + E E   +   + +         E E++ K + D                 LEEDEQLA+AIQESL I S P+YD  +    +P+L+PPG+RICAGC +EIG GRFLSCMGGVWHPECF CH+C++PI+DYEFSMS NRP+HK+CY+E+HHP+CDVCKNFIPTN++GLIEYRAHPFW QKYCPSHE D TPRCCSCERME RDT+YLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQ+FYEGL MK+EQQIP+LLVERQALNEAMEGEK+GHHH+PETRGLCLSEEQT++TISRRP+IGAGYR IDMITEPYRLIR CEVTAIL+LY LPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWL+SE+ +G+G++ A   ++SS+SSS S+  S+KKGKRSDFEKKLGEFFKHQIESDTS+AYGDGFR GN+A+LKYGL+RTLDHI +TG FP
Sbjct:    1 MGWFTKLLKGSDHKILRGQYHGKYGEDRIWDNHHSSMDDLTDIEKEDIDRAIALSLSEEDHKGKKVVHYDSQSEDEELCKIDDDEEDEHLVKVHLDEDERLAKIQQQEEERLAKTQQDERLAKIQQEDERLAKAQLEEDEQLARAIQESLKIGSPPRYDNDSSILSFPHLFPPGYRICAGCKTEIGQGRFLSCMGGVWHPECFCCHACHLPITDYEFSMSSNRPYHKACYREKHHPRCDVCKNFIPTNSSGLIEYRAHPFWLQKYCPSHELDGTPRCCSCERMESRDTKYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQEFYEGLNMKLEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTISRRPRIGAGYRAIDMITEPYRLIRHCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLESELYSGTGNDGASSSASSSSSSSPSSSVSTKKGKRSDFEKKLGEFFKHQIESDTSSAYGDGFRLGNQAMLKYGLKRTLDHIHMTGSFP 546
Match NameStatsDescription
A0A5B7ASS5E-Value: 0.000e+0, PID: 77.46LIM zinc-binding domain-containing protein {ECO:00... [more]
A0A6P6TLF0E-Value: 0.000e+0, PID: 76.78(protein DA1-related 1-like {ECO:0000313|RefSeq:XP... [more]
A0A068U2L7E-Value: 0.000e+0, PID: 76.22LIM zinc-binding domain-containing protein {ECO:00... [more]
A0A5B7ATH8E-Value: 0.000e+0, PID: 76.07LIM zinc-binding domain-containing protein {ECO:00... [more]
A0A6S7M9Y3E-Value: 0.000e+0, PID: 75.87LIM zinc-binding domain-containing protein {ECO:00... [more]
A0A2I4FCP5E-Value: 0.000e+0, PID: 75.38(protein DA1-related 1 {ECO:0000313|RefSeq:XP_0188... [more]
A0A6S7MA52E-Value: 0.000e+0, PID: 75.87LIM zinc-binding domain-containing protein {ECO:00... [more]
A0A4S4DH51E-Value: 0.000e+0, PID: 74.63LIM zinc-binding domain-containing protein {ECO:00... [more]
A0A0G2UNZ8E-Value: 0.000e+0, PID: 70.70(DA-related 1 protein 4 {ECO:0000313|EMBL:AKI32355... [more]
A0A0G2UMG5E-Value: 0.000e+0, PID: 70.70(DA-related 1 protein 4 {ECO:0000313|EMBL:AKI32344... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.