XM_017363839.1

Resource Type: 
Polypeptide
Name: 
XM_017363839.1
Identifier: 
XM_017363839.1-protein
Sequence: 
MAVAVRGGRGGGSALSVGIRNFFSYRIFVSAMFTLLFLATLSVLFSSHPP
PLPAHSSSTGNAYMHRTFLALKSDPLKTRLDLIHRQANDHMALVNAYAAY
ARKLKLDISRQLKLFDDLAQNISDVALKPKYRTALIESDAPVDEDLLRQF
EKEVKDKVKIARLMVGDAKESYDNQLKIQKLKDTIFAVNELLIKAKKSGA
FASLIAAKSTPKSLHCLAMRLMGEQIANPEKFRDDAPKPEFEDPTLYHYA
LFSDNVIAVSVVVNSTVMNAVEKSKHVFHVVTDKMNVAAMKVWFKMQPVE
GAHVEVKAVEEYTFLNSSYVPVLKQLESAKLQKFYFENRAENATKDVNNL
KFKNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTPLWRIDME
GKVNGAVETCFGSFHRYAQYLNFSHPLIRDKFSPKACAWAFGMNMFDLDA
WRREKLTEEYHYWQNLNEDRTLWKSGTLPPGLMTFYSTTKSLDKSWHVLG
LGYNPSISMDEINGAAVIHFNGNMKPWLDIAMNQFKSLWSKYVDNTMEFV
QMCNFGL
Sequence Length: 
557
Sequence Checksum: 
251d1cd80816b58d5017f568328b9dcb
View location in JBrowse: 
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017363839.1, derives from mRNA, XM_017363839.1.
Loading content
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017363839.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017363839.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M0ZLT9 (Hexosyltransferase {ECO:0000256|RuleBase:RU362027} (2.4.1.- {ECO:0000256|RuleBase:RU362027}))

HSP 1 Score: 955.666 bits (2469), Expect = 0.000e+0
Identity = 444/557 (79.71%), Postives = 509/557 (91.38%), Query Frame = 0
 
Query:    1 MAVAVRGGRGGGSALSVGIRNFFSYRIFVSAMFTLLFLATLSVLFSSHPPPLPAHSSSTGNAYMHRTFLALKSDPLKTRLDLIHRQANDHMALVNAYAAYARKLKLDISRQLKLFDDLAQNISDVALKPKYRTALIESDAPVDEDLLRQFEKEVKDKVKIARLMVGDAKESYDNQLKIQKLKDTIFAVNELLIKAKKSGAFASLIAAKSTPKSLHCLAMRLMGEQIANPEKFRDDAPKPEFEDPTLYHYALFSDNVIAVSVVVNSTVMNAVEKSKHVFHVVTDKMNVAAMKVWFKMQPVEGAHVEVKAVEEYTFLNSSYVPVLKQLESAKLQKFYFENRAENATKDVNNLKFKNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTPLWRIDMEGKVNGAVETCFGSFHRYAQYLNFSHPLIRDKFSPKACAWAFGMNMFDLDAWRREKLTEEYHYWQNLNEDRTLWKSGTLPPGLMTFYSTTKSLDKSWHVLGLGYNPSISMDEINGAAVIHFNGNMKPWLDIAMNQFKSLWSKYVDNTMEFVQMCNFGL 557
            MAVA+RGGRGGGSAL    RNFFSYRIFVSAMFTLLFLATLSVLFSSH      H S+ GNAY+HR+ ++L SDPLKTRLDLIH+QANDH+ALVNAYAAYARKLKL+I++QLK+F+DLAQN SD+  K  YR+ L ++D P+D+D L+QFEKEVKDKVK ARL++ D+KESYDNQLKIQKLKDTIFAVNEL +KAKK+GAFAS IAAKSTPKSLHCLAMRLM E+I++PEK+RD+ PKPE+EDPTLYHYA+FSDNVIAVSVVVNS + NA E  KHVFHVVTD+MN+AAMKVWFKM+P++ AH+E+K+VE++TFL SSYVPVLKQLESAKLQ FYF+N AENATKDVNN+KFKNPKYLSMLNHLRFYLPEMYP LHRILFLDDDVVVQKDLT LW ID++GKVNGAVETCFGSFHRY+QYLNFSHPL+R+KF+PKACAWAFGMN+FDLDAWRREK TE+YHYWQNLNEDRTLWK GTLP GLMTF+S TKSLDKSWHVLGLG+NPS+SMDEI+ AAVIH+NG+MKPWLDIA+NQ+K LW+KY+D+ MEFVQMCNFG+
Sbjct:    1 MAVAIRGGRGGGSAL----RNFFSYRIFVSAMFTLLFLATLSVLFSSH------HDSTIGNAYLHRSLVSLSSDPLKTRLDLIHKQANDHVALVNAYAAYARKLKLEIAKQLKMFEDLAQNFSDLQSKQNYRSNLFDTDGPLDDDSLKQFEKEVKDKVKFARLLIADSKESYDNQLKIQKLKDTIFAVNELFVKAKKNGAFASSIAAKSTPKSLHCLAMRLMEERISHPEKYRDEDPKPEYEDPTLYHYAIFSDNVIAVSVVVNSVIKNAEEPWKHVFHVVTDRMNLAAMKVWFKMRPIQQAHIEIKSVEDFTFLTSSYVPVLKQLESAKLQNFYFQNSAENATKDVNNMKFKNPKYLSMLNHLRFYLPEMYPTLHRILFLDDDVVVQKDLTALWTIDLDGKVNGAVETCFGSFHRYSQYLNFSHPLVREKFNPKACAWAFGMNIFDLDAWRREKCTEQYHYWQNLNEDRTLWKLGTLPAGLMTFFSKTKSLDKSWHVLGLGFNPSVSMDEIHKAAVIHYNGDMKPWLDIALNQYKELWTKYIDSEMEFVQMCNFGV 547    
BLAST of XM_017363839.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S4A3S7 (Hexosyltransferase {ECO:0000256|RuleBase:RU362027} (2.4.1.- {ECO:0000256|RuleBase:RU362027}))

HSP 1 Score: 952.199 bits (2460), Expect = 0.000e+0
Identity = 442/540 (81.85%), Postives = 498/540 (92.22%), Query Frame = 0
 
Query:   18 GIRNFFSYRIFVSAMFTLLFLATLSVLFSSHPPPLPAHSSSTGNAYMHRTFLALKSDPLKTRLDLIHRQANDHMALVNAYAAYARKLKLDISRQLKLFDDLAQNISDVALKPKYRTALIESDAPVDEDLLRQFEKEVKDKVKIARLMVGDAKESYDNQLKIQKLKDTIFAVNELLIKAKKSGAFASLIAAKSTPKSLHCLAMRLMGEQIANPEKFRDDAPKPEFEDPTLYHYALFSDNVIAVSVVVNSTVMNAVEKSKHVFHVVTDKMNVAAMKVWFKMQPVEGAHVEVKAVEEYTFLNSSYVPVLKQLESAKLQKFYFENRAENATKDVNNLKFKNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTPLWRIDMEGKVNGAVETCFGSFHRYAQYLNFSHPLIRDKFSPKACAWAFGMNMFDLDAWRREKLTEEYHYWQNLNEDRTLWKSGTLPPGLMTFYSTTKSLDKSWHVLGLGYNPSISMDEINGAAVIHFNGNMKPWLDIAMNQFKSLWSKYVDNTMEFVQMCNFGL 557
             +RNFFSYRIFVSAMFTLLFLATLSVLFSSH      H S+TGNAYMHR+F+AL SDPLKTRLDLIH+QANDH+ALVNAYAAYARKLKLDIS+QLK+F+DLAQN SD+  KP YR  L ++D P+D+D L+QFEKEVKDKVK ARL++ D+KESYDNQLKIQKLKDTIFAVNEL +KAKK+GAFASLIAAKSTPKSLHCLAMRLM E+I++PEK+RD+ P+PEFEDPTLYHYA+FSDNVIAVSVVVNS + NA E  KHVFHVVTDKMN+AAMKVWFKM+P+  AH+E+K+VE++TFL SSYVPVLKQLESAKLQ FYF+N AENATKDVNN+KFKNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLT LW ID++GKVNGAVETCFGSFHRYAQYLNFSHPL+R+KF+PKACAWAFGMN+FDLDAWRRE+ TE+YHYWQNLNEDRTLWK GTLP GLMTFYS TKSLDKSWHVLGLGYNPS+SMDEI+ AAVIH+NG+MKPWLDIA+NQ+K LW+KY+D+ MEFVQMCNFG+
Sbjct:   14 ALRNFFSYRIFVSAMFTLLFLATLSVLFSSH------HDSTTGNAYMHRSFVALSSDPLKTRLDLIHKQANDHIALVNAYAAYARKLKLDISKQLKMFEDLAQNFSDLQSKPNYRANLFDTDGPLDDDSLKQFEKEVKDKVKFARLLIADSKESYDNQLKIQKLKDTIFAVNELFVKAKKNGAFASLIAAKSTPKSLHCLAMRLMEERISHPEKYRDEDPEPEFEDPTLYHYAIFSDNVIAVSVVVNSVIKNAEEPWKHVFHVVTDKMNLAAMKVWFKMRPIRQAHIEIKSVEDFTFLTSSYVPVLKQLESAKLQNFYFQNSAENATKDVNNMKFKNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTALWTIDLDGKVNGAVETCFGSFHRYAQYLNFSHPLVREKFTPKACAWAFGMNIFDLDAWRREQCTEQYHYWQNLNEDRTLWKLGTLPAGLMTFYSKTKSLDKSWHVLGLGYNPSVSMDEIHKAAVIHYNGDMKPWLDIALNQYKELWTKYIDSEMEFVQMCNFGV 547    
BLAST of XM_017363839.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A314L421 (Hexosyltransferase {ECO:0000256|RuleBase:RU362027} (2.4.1.- {ECO:0000256|RuleBase:RU362027}))

HSP 1 Score: 950.658 bits (2456), Expect = 0.000e+0
Identity = 441/540 (81.67%), Postives = 497/540 (92.04%), Query Frame = 0
 
Query:   18 GIRNFFSYRIFVSAMFTLLFLATLSVLFSSHPPPLPAHSSSTGNAYMHRTFLALKSDPLKTRLDLIHRQANDHMALVNAYAAYARKLKLDISRQLKLFDDLAQNISDVALKPKYRTALIESDAPVDEDLLRQFEKEVKDKVKIARLMVGDAKESYDNQLKIQKLKDTIFAVNELLIKAKKSGAFASLIAAKSTPKSLHCLAMRLMGEQIANPEKFRDDAPKPEFEDPTLYHYALFSDNVIAVSVVVNSTVMNAVEKSKHVFHVVTDKMNVAAMKVWFKMQPVEGAHVEVKAVEEYTFLNSSYVPVLKQLESAKLQKFYFENRAENATKDVNNLKFKNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTPLWRIDMEGKVNGAVETCFGSFHRYAQYLNFSHPLIRDKFSPKACAWAFGMNMFDLDAWRREKLTEEYHYWQNLNEDRTLWKSGTLPPGLMTFYSTTKSLDKSWHVLGLGYNPSISMDEINGAAVIHFNGNMKPWLDIAMNQFKSLWSKYVDNTMEFVQMCNFGL 557
             +RNFFSYRIFVSAMFTLLFLATLSVLFSSH      H S+TGNAYMHR+F+AL SDPLKTRLDLIH+QANDH+ALVNAYAAYARKLKLDIS+QLK+F+DLAQN SD+  KP YR  L ++D P+D+D L+QFEKEVKDKVK ARL++ D+KESYDNQLKIQKLKDTIFAVNEL +KAKK+GAFASLIAAKSTPKSLHCLAMRLM E+I++PEK+RD+ P+PEFEDPTLYHYA+FSDNVIAVSVVVNS + NA E  KHVFHVVTDKMN+AAMKVWFKM+P+  AH+E+K+VE++TFL SSYVPVLKQLES KLQ FYF+N AENATKDVNN+KFKNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLT LW ID++GKVNGAVETCFGSFHRYAQYLNFSHPL+R+KF+PKACAWAFGMN+FDLDAWRRE+ TE+YHYWQNLNEDRTLWK GTLP GLMTFYS TKSLDKSWHVLGLGYNPS+SMDEI+ AAVIH+NG+MKPWLDIA+NQ+K LW+KY+D+ MEFVQMCNFG+
Sbjct:   14 ALRNFFSYRIFVSAMFTLLFLATLSVLFSSH------HDSTTGNAYMHRSFVALSSDPLKTRLDLIHKQANDHIALVNAYAAYARKLKLDISKQLKMFEDLAQNFSDLQSKPNYRANLFDTDGPLDDDSLKQFEKEVKDKVKFARLLIADSKESYDNQLKIQKLKDTIFAVNELFVKAKKNGAFASLIAAKSTPKSLHCLAMRLMEERISHPEKYRDEDPEPEFEDPTLYHYAIFSDNVIAVSVVVNSAIKNAEEPWKHVFHVVTDKMNLAAMKVWFKMRPIRQAHIEIKSVEDFTFLTSSYVPVLKQLESTKLQNFYFQNSAENATKDVNNMKFKNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTALWTIDLDGKVNGAVETCFGSFHRYAQYLNFSHPLVREKFTPKACAWAFGMNIFDLDAWRREQCTEQYHYWQNLNEDRTLWKLGTLPAGLMTFYSKTKSLDKSWHVLGLGYNPSVSMDEIHKAAVIHYNGDMKPWLDIALNQYKELWTKYIDSEMEFVQMCNFGV 547    
BLAST of XM_017363839.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7XM91 (Hexosyltransferase {ECO:0000256|RuleBase:RU362027} (2.4.1.- {ECO:0000256|RuleBase:RU362027}))

HSP 1 Score: 949.888 bits (2454), Expect = 0.000e+0
Identity = 441/540 (81.67%), Postives = 497/540 (92.04%), Query Frame = 0
 
Query:   18 GIRNFFSYRIFVSAMFTLLFLATLSVLFSSHPPPLPAHSSSTGNAYMHRTFLALKSDPLKTRLDLIHRQANDHMALVNAYAAYARKLKLDISRQLKLFDDLAQNISDVALKPKYRTALIESDAPVDEDLLRQFEKEVKDKVKIARLMVGDAKESYDNQLKIQKLKDTIFAVNELLIKAKKSGAFASLIAAKSTPKSLHCLAMRLMGEQIANPEKFRDDAPKPEFEDPTLYHYALFSDNVIAVSVVVNSTVMNAVEKSKHVFHVVTDKMNVAAMKVWFKMQPVEGAHVEVKAVEEYTFLNSSYVPVLKQLESAKLQKFYFENRAENATKDVNNLKFKNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTPLWRIDMEGKVNGAVETCFGSFHRYAQYLNFSHPLIRDKFSPKACAWAFGMNMFDLDAWRREKLTEEYHYWQNLNEDRTLWKSGTLPPGLMTFYSTTKSLDKSWHVLGLGYNPSISMDEINGAAVIHFNGNMKPWLDIAMNQFKSLWSKYVDNTMEFVQMCNFGL 557
             +RNFFSYRIFVSAMFTLLFLATLSVLFSSH      H  +TGNAYMHR+F+AL SDPLKTRLDLIH+QANDH+ALVNAYAAYARKLKLDIS+QLK+F+DLAQN SD+  KP YR  L ++D P+D+D L+QFEKEVKDKVK ARL++ D+KESYDNQLKIQKLKDTIFAVNEL +KAKK+GAFASLIAAKSTPKSLHCLAMRLM E+I++PEK+RD+ P+PEFEDPTLYHYA+FSDNVIAVSVVVNS + NA E  KHVFHVVTDKMN+AAMKVWFKM+P+  AH+E+K+VE++TFL SSYVPVLKQLESAKLQ FYF+N AENATKDVNN+KFKNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLT LW ID++GKVNGAVETCFGSFHRYAQYLNFSHPL+R+KF+PKACAWAFGMN+FDLDAWRRE+ TE+YHYWQNLNEDRTLWK GTLP GLMTFYS TKSLDKSWHVLGLGYNPS+SMDEI+ AAVIH+NG+MKPWLDIA+NQ+K LW+KY+D+ MEFVQMCNFG+
Sbjct:   14 ALRNFFSYRIFVSAMFTLLFLATLSVLFSSH------HDYTTGNAYMHRSFVALSSDPLKTRLDLIHKQANDHIALVNAYAAYARKLKLDISKQLKMFEDLAQNFSDLQSKPNYRANLFDTDGPLDDDSLKQFEKEVKDKVKFARLLIADSKESYDNQLKIQKLKDTIFAVNELFVKAKKNGAFASLIAAKSTPKSLHCLAMRLMEERISHPEKYRDEDPEPEFEDPTLYHYAIFSDNVIAVSVVVNSVIKNAEEPWKHVFHVVTDKMNLAAMKVWFKMRPIRQAHIEIKSVEDFTFLTSSYVPVLKQLESAKLQNFYFQNSAENATKDVNNMKFKNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTALWTIDLDGKVNGAVETCFGSFHRYAQYLNFSHPLVREKFTPKACAWAFGMNIFDLDAWRREQCTEQYHYWQNLNEDRTLWKLGTLPAGLMTFYSKTKSLDKSWHVLGLGYNPSVSMDEIHKAAVIHYNGDMKPWLDIALNQYKELWTKYIDSEMEFVQMCNFGV 547    
BLAST of XM_017363839.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S4D1G7 (Hexosyltransferase {ECO:0000256|RuleBase:RU362027} (2.4.1.- {ECO:0000256|RuleBase:RU362027}))

HSP 1 Score: 949.118 bits (2452), Expect = 0.000e+0
Identity = 440/540 (81.48%), Postives = 496/540 (91.85%), Query Frame = 0
 
Query:   18 GIRNFFSYRIFVSAMFTLLFLATLSVLFSSHPPPLPAHSSSTGNAYMHRTFLALKSDPLKTRLDLIHRQANDHMALVNAYAAYARKLKLDISRQLKLFDDLAQNISDVALKPKYRTALIESDAPVDEDLLRQFEKEVKDKVKIARLMVGDAKESYDNQLKIQKLKDTIFAVNELLIKAKKSGAFASLIAAKSTPKSLHCLAMRLMGEQIANPEKFRDDAPKPEFEDPTLYHYALFSDNVIAVSVVVNSTVMNAVEKSKHVFHVVTDKMNVAAMKVWFKMQPVEGAHVEVKAVEEYTFLNSSYVPVLKQLESAKLQKFYFENRAENATKDVNNLKFKNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTPLWRIDMEGKVNGAVETCFGSFHRYAQYLNFSHPLIRDKFSPKACAWAFGMNMFDLDAWRREKLTEEYHYWQNLNEDRTLWKSGTLPPGLMTFYSTTKSLDKSWHVLGLGYNPSISMDEINGAAVIHFNGNMKPWLDIAMNQFKSLWSKYVDNTMEFVQMCNFGL 557
             +RNFFSYRIFVSAMFTLLFLATLSVLFSSH      H S+TGNAY+HR+F+AL SDPLKTRLDLIH+QANDH+ALVNAYAAYARKLKLDIS+QLK+F+DL QN SD+  KP YR  L ++D P+D+D L+QFEKEVKDKVK ARL++ D+KESYDNQLKIQKLKDTIFAVNEL +KAKK+GAFASLIAAKSTPKSLHCLAMRLM E+I+ PEK+RD+ P+PEFEDPTLYHYA+FSDNVIAVSVVVNS + NA E  KHVFHVVTDKMN+AAMKVWFKM+P+  AH+E+K+VE++TFL SSYVPVLKQLESAKLQ FYF+N AENATKDVNN+KFKNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLT LW ID++GKVNGAVETCFGSFHRYAQYLNFSHPL+R+KF+PKACAWAFGMN+FDLDAWRRE+ TE+YHYWQNLNEDRTLWK GTLP GLMTFYS TKSLDKSWHVLGLGYNPS+SMDEI+ AAVIH+NG+MKPWLDIA+NQ+K LW+KY+D+ MEFVQMCNFG+
Sbjct:   14 ALRNFFSYRIFVSAMFTLLFLATLSVLFSSH------HDSTTGNAYVHRSFVALSSDPLKTRLDLIHKQANDHIALVNAYAAYARKLKLDISKQLKMFEDLVQNFSDLQSKPNYRANLFDTDGPLDDDSLKQFEKEVKDKVKFARLLIADSKESYDNQLKIQKLKDTIFAVNELFVKAKKNGAFASLIAAKSTPKSLHCLAMRLMEERISQPEKYRDEDPEPEFEDPTLYHYAIFSDNVIAVSVVVNSVIKNAEEPWKHVFHVVTDKMNLAAMKVWFKMRPIRQAHIEIKSVEDFTFLTSSYVPVLKQLESAKLQNFYFQNSAENATKDVNNMKFKNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTALWTIDLDGKVNGAVETCFGSFHRYAQYLNFSHPLVREKFTPKACAWAFGMNIFDLDAWRREQCTEQYHYWQNLNEDRTLWKLGTLPAGLMTFYSKTKSLDKSWHVLGLGYNPSVSMDEIHKAAVIHYNGDMKPWLDIALNQYKELWTKYIDSEMEFVQMCNFGV 547    
BLAST of XM_017363839.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P5ALY8 (Hexosyltransferase {ECO:0000256|RuleBase:RU362027} (2.4.1.- {ECO:0000256|RuleBase:RU362027}))

HSP 1 Score: 946.806 bits (2446), Expect = 0.000e+0
Identity = 454/541 (83.92%), Postives = 503/541 (92.98%), Query Frame = 0
 
Query:   21 NFFSYRIFVSAMFTLLFLATLSVLFSSHPPPLPAHSS---STGNAYMHRTFLALKSDPLKTRLDLIHRQANDHMALVNAYAAYARKLKLDISRQLKLFDDLAQNISDVALKPKYRTALIESDAPVDEDLLRQFEKEVKDKVKIARLMVGDAKESYDNQLKIQKLKDTIFAVNELLIKAKKSGAFASLIAAKSTPKSLHCLAMRLMGEQIANPEKFRDDAPKPEFEDPTLYHYALFSDNVIAVSVVVNSTVMNAVEKSKHVFHVVTDKMNVAAMKVWFKMQPVEG-AHVEVKAVEEYTFLNSSYVPVLKQLESAKLQKFYFENRAENATKDVNNLKFKNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTPLWRIDMEGKVNGAVETCFGSFHRYAQYLNFSHPLIRDKFSPKACAWAFGMNMFDLDAWRREKLTEEYHYWQNLNEDRTLWKSGTLPPGLMTFYSTTKSLDKSWHVLGLGYNPSISMDEINGAAVIHFNGNMKPWLDIAMNQFKSLWSKYVDNTMEFVQMCNFGL 557
            +FFSYRIFVSAMF+LLF+ATLSVL +++P   P H S   +TGNAY+HRTFLALKSDPLKTRLDLI++QA+DHM LVNAYAAYARKLKLDISRQL+LF+DLA +ISD+ LKP YRT+L ESD PVDED+LRQFEKEVKDKVK AR MV +AKE+YD QLKIQKLKDTIFAVNELL KAKK+GAFASLIAAKS PKSLHCLAMRL+GE+I+NPEK+RD+ P+PEFEDP+LYHYA+FSDNVIAVSVVV S V NA E  KHVFHVVTD+MN+AAMKVWFKM+P EG AHVEVKAVE+YTFLNSSYVPVL+QLESAKLQKFYFENR ENATKD NN+KF+NPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLT LW+ID++GKVNGAVETCFGSFHRYAQYLNFSHPLIR+KF+PKACAWA+GMN+FDLDAWRREK TE+YHYWQ LNEDRTLW+ GTLPPGL+TFYSTTKSLDKSWHVLGLGYNPSISMDEIN AAV+H+NGNMKPWLDIAMNQ+KSLW+KYVDN MEFVQMCNFGL
Sbjct:   24 SFFSYRIFVSAMFSLLFIATLSVLLTTNPTT-PHHDSALPTTGNAYVHRTFLALKSDPLKTRLDLIYKQASDHMTLVNAYAAYARKLKLDISRQLRLFNDLASDISDLQLKPSYRTSLFESDGPVDEDVLRQFEKEVKDKVKTARAMVAEAKENYDTQLKIQKLKDTIFAVNELLTKAKKNGAFASLIAAKSVPKSLHCLAMRLVGERISNPEKYRDEGPRPEFEDPSLYHYAIFSDNVIAVSVVVRSVVKNAAEPWKHVFHVVTDRMNLAAMKVWFKMRPAEGGAHVEVKAVEDYTFLNSSYVPVLRQLESAKLQKFYFENREENATKDANNMKFRNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTGLWKIDLDGKVNGAVETCFGSFHRYAQYLNFSHPLIREKFNPKACAWAYGMNIFDLDAWRREKSTEQYHYWQTLNEDRTLWRLGTLPPGLITFYSTTKSLDKSWHVLGLGYNPSISMDEINKAAVVHYNGNMKPWLDIAMNQYKSLWTKYVDNDMEFVQMCNFGL 563    
BLAST of XM_017363839.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2J6KSK3 (Hexosyltransferase {ECO:0000256|RuleBase:RU362027} (2.4.1.- {ECO:0000256|RuleBase:RU362027}))

HSP 1 Score: 946.421 bits (2445), Expect = 0.000e+0
Identity = 450/561 (80.21%), Postives = 502/561 (89.48%), Query Frame = 0
 
Query:    1 MAVAVRGGRG-GGSALSVGIRNFFSYRIFVSAMFTLLFLATLSVLFSSHPPPLPAHS--SSTGNAYMHRTFLALKSDPLKTRLDLIHRQANDHMALVNAYAAYARKLKLDISRQLKLFDDLAQNISDVALKPKYRTALIESDAPVDEDLLRQFEKEVKDKVKIARLMVGDAKESYDNQLKIQKLKDTIFAVNELLIKAKKSGAFASLIAAKSTPKSLHCLAMRLMGEQIANPEKFRDDAPKPEFEDPTLYHYALFSDNVIAVSVVVNSTVMNAVEKSKHVFHVVTDKMNVAAMKVWFKMQPVE-GAHVEVKAVEEYTFLNSSYVPVLKQLESAKLQKFYFENRAENATKDVNNLKFKNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTPLWRIDMEGKVNGAVETCFGSFHRYAQYLNFSHPLIRDKFSPKACAWAFGMNMFDLDAWRREKLTEEYHYWQNLNEDRTLWKSGTLPPGLMTFYSTTKSLDKSWHVLGLGYNPSISMDEINGAAVIHFNGNMKPWLDIAMNQFKSLWSKYVDNTMEFVQMCNFGL 557
            MAV  R GRG GGSA S  +R+FFSYRIFVSAMFTLLF AT SVLFSSHP     +S   +TG AYMHRTFLALKSDPLKTRLDLIH+QANDH+ LVNAYA+YARKLKL+IS+QLK FDD+AQN SD+ LKP YRTAL ESD  VDE++LRQFEKEVKDK+KIARLM+ + KESYDNQLKIQKLKDTIFAVNELLIKAKK+GAFASLIAAKSTPKSLHCLAMRLMGE+IANPEK+RD+ PKPEFEDP+LYHYA+FSDNVIA+SVVVNS V NA E  KHVFH+VTDKMN+AAMKVWFKM+P+E GA V++KAVEE+TFLNSSYVP+L+QLESA LQK Y E          NN K +N K++SMLN+L+FYLPEMYPKLHRILFLDDDVVVQKDLT LW++D+EGKVNGAVETCFGSFHRYAQYLNFSHPLI++KF+PKACAWAFGMN+FDLDAWRRE+LT++YHYWQ+LNED +LW  GTLPPGLMTFYSTTKSL+K+WHVLGLGYNPSISMDEIN AAVIHFNGNMKPWLDIAMNQFK LW+KYVDN MEFVQMCNFGL
Sbjct:    1 MAVVARSGRGAGGSAFSSALRSFFSYRIFVSAMFTLLFFATASVLFSSHPAHFSDNSEIQTTGRAYMHRTFLALKSDPLKTRLDLIHKQANDHIVLVNAYASYARKLKLEISKQLKTFDDMAQNFSDLGLKPTYRTALFESDGAVDEEVLRQFEKEVKDKIKIARLMIAENKESYDNQLKIQKLKDTIFAVNELLIKAKKNGAFASLIAAKSTPKSLHCLAMRLMGERIANPEKYRDEEPKPEFEDPSLYHYAIFSDNVIAISVVVNSAVKNAEEPWKHVFHIVTDKMNLAAMKVWFKMRPIEGGAFVDIKAVEEFTFLNSSYVPLLRQLESANLQKIYLE----------NNTKSENTKHISMLNYLKFYLPEMYPKLHRILFLDDDVVVQKDLTGLWKVDLEGKVNGAVETCFGSFHRYAQYLNFSHPLIKEKFNPKACAWAFGMNIFDLDAWRRERLTDQYHYWQDLNEDESLWDMGTLPPGLMTFYSTTKSLEKTWHVLGLGYNPSISMDEINNAAVIHFNGNMKPWLDIAMNQFKHLWTKYVDNEMEFVQMCNFGL 551    
BLAST of XM_017363839.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A103XKV1 (Hexosyltransferase {ECO:0000256|RuleBase:RU362027} (2.4.1.- {ECO:0000256|RuleBase:RU362027}))

HSP 1 Score: 944.11 bits (2439), Expect = 0.000e+0
Identity = 459/561 (81.82%), Postives = 510/561 (90.91%), Query Frame = 0
 
Query:    1 MAVAVRGGRG-GGSALSVGIRNFFSYRIFVSAMFTLLFLATLSVLFSSHPPPLPAHS--SSTGNAYMHRTFLALKSDPLKTRLDLIHRQANDHMALVNAYAAYARKLKLDISRQLKLFDDLAQNISDVALKPKYRTALIESDAPVDEDLLRQFEKEVKDKVKIARLMVGDAKESYDNQLKIQKLKDTIFAVNELLIKAKKSGAFASLIAAKSTPKSLHCLAMRLMGEQIANPEKFRDDAPKPEFEDPTLYHYALFSDNVIAVSVVVNSTVMNAVEKSKHVFHVVTDKMNVAAMKVWFKMQPVEG-AHVEVKAVEEYTFLNSSYVPVLKQLESAKLQKFYFENRAENATKDVNNLKFKNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTPLWRIDMEGKVNGAVETCFGSFHRYAQYLNFSHPLIRDKFSPKACAWAFGMNMFDLDAWRREKLTEEYHYWQNLNEDRTLWKSGTLPPGLMTFYSTTKSLDKSWHVLGLGYNPSISMDEINGAAVIHFNGNMKPWLDIAMNQFKSLWSKYVDNTMEFVQMCNFGL 557
            MAV  R GRG GGSA S  +R+FFSYRIFVSAMFTLLF AT SVLFSSHP     +S   +TG AYMHRTFLALKSDPLKTRLDLIH+QA+DH+ LVNAYAAYARKLKL+IS+QL++FDD+AQN SDV +KP YRTAL ES+ PVDE++LRQFEKEVKDK+K+ARLM+ + KESYDNQLKIQKLKDTIFAVNELLIKAKK+GAFASLIAAKSTPKSLHCLAMRLMGE+IA+PEK+RD+ PKPEFEDP+LYHYA+FSDNVIAVSVVVNS V NA E  KHVFH+VTDKMN+AAMKVWFKM+PVEG A VEVKAVEE+TFLN SYVPVL+Q+ESA L   Y E++AEN T +V N K +NPK+LSMLNHL+FYLPEMYPKLHRILFLDDDVVVQKDLT LW++DM+GKVNGAVETCFGSFHRYAQYLNFSHPLIRDKF+PKACAWAFGMN+FDLDAWRRE+LTE+YHYWQ+LNED++LWK GTLPPGLMTFYSTTKSLDK+WHVLGLGYNPSISMDEI  AAVIHFNGNMKPWLDIAMNQFK LW+KYVDN MEFVQMCNFGL
Sbjct:    1 MAVVARSGRGNGGSAFSSALRSFFSYRIFVSAMFTLLFFATASVLFSSHPAHFNDNSEIQTTGKAYMHRTFLALKSDPLKTRLDLIHKQASDHIVLVNAYAAYARKLKLEISKQLRVFDDMAQNFSDVGVKPTYRTALFESNGPVDEEVLRQFEKEVKDKIKVARLMIAENKESYDNQLKIQKLKDTIFAVNELLIKAKKNGAFASLIAAKSTPKSLHCLAMRLMGERIASPEKYRDEEPKPEFEDPSLYHYAIFSDNVIAVSVVVNSAVKNAEEPWKHVFHIVTDKMNLAAMKVWFKMRPVEGGAFVEVKAVEEFTFLNPSYVPVLRQMESANL---YIEDKAENETGEVKNTKSRNPKHLSMLNHLKFYLPEMYPKLHRILFLDDDVVVQKDLTALWKLDMDGKVNGAVETCFGSFHRYAQYLNFSHPLIRDKFNPKACAWAFGMNIFDLDAWRRERLTEQYHYWQDLNEDQSLWKLGTLPPGLMTFYSTTKSLDKTWHVLGLGYNPSISMDEIRNAAVIHFNGNMKPWLDIAMNQFKHLWTKYVDNEMEFVQMCNFGL 558    
BLAST of XM_017363839.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P5CAL1 (Hexosyltransferase {ECO:0000256|RuleBase:RU362027} (2.4.1.- {ECO:0000256|RuleBase:RU362027}))

HSP 1 Score: 944.11 bits (2439), Expect = 0.000e+0
Identity = 453/541 (83.73%), Postives = 501/541 (92.61%), Query Frame = 0
 
Query:   21 NFFSYRIFVSAMFTLLFLATLSVLFSSHPPPLPAHSS---STGNAYMHRTFLALKSDPLKTRLDLIHRQANDHMALVNAYAAYARKLKLDISRQLKLFDDLAQNISDVALKPKYRTALIESDAPVDEDLLRQFEKEVKDKVKIARLMVGDAKESYDNQLKIQKLKDTIFAVNELLIKAKKSGAFASLIAAKSTPKSLHCLAMRLMGEQIANPEKFRDDAPKPEFEDPTLYHYALFSDNVIAVSVVVNSTVMNAVEKSKHVFHVVTDKMNVAAMKVWFKMQPVEG-AHVEVKAVEEYTFLNSSYVPVLKQLESAKLQKFYFENRAENATKDVNNLKFKNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTPLWRIDMEGKVNGAVETCFGSFHRYAQYLNFSHPLIRDKFSPKACAWAFGMNMFDLDAWRREKLTEEYHYWQNLNEDRTLWKSGTLPPGLMTFYSTTKSLDKSWHVLGLGYNPSISMDEINGAAVIHFNGNMKPWLDIAMNQFKSLWSKYVDNTMEFVQMCNFGL 557
            +FFSYRIFVSAMF+LLF+ATLSVL +++P   P H S   +TGNAY+HRTFLALKSDPLKTRLDLI++QA+DHM LVNAYAAYARKLKLDISRQL+LF+DLA +ISD+ LKP YRT+L ESD PVDEDLLRQFEKEVKDKVK AR MV +AKE+YD QLKIQKLKDTIFAVNELL KAKK+GAFASLIAAKS PKSLHCLAMRL+GE+I+NPEK+RD+ P+PEFEDP+LYHYA+FSDNVIAVSVVV S V NA E  KHVFHVVTD+MN+AAMKVWFKM+P EG AHVEVKAVE+YTFLNSSYVPVL+QLESAKLQKFYFENR ENATKD NN+KF+NPKYLSMLNHLRFYLPEMYPKLH+ILFLDDDVVVQKDLT LW+ID++GKVNGAVETCFGSFHRY QYLNFSHPLIR KF+PKACAWA+GMN+FDLDAWRREK TE+YHYWQ LNEDRTLW+ GTLPPGL+TFYSTTKSLDKSWHVLGLGYNPSISMDEIN AAV+H+NGNMKPWLDIAMNQ+KSLW+KYVDN MEFVQMCNFGL
Sbjct:   24 SFFSYRIFVSAMFSLLFIATLSVLLTTNPTT-PHHESALPTTGNAYVHRTFLALKSDPLKTRLDLIYKQASDHMTLVNAYAAYARKLKLDISRQLRLFNDLASDISDLQLKPSYRTSLFESDGPVDEDLLRQFEKEVKDKVKTARAMVAEAKENYDTQLKIQKLKDTIFAVNELLTKAKKNGAFASLIAAKSVPKSLHCLAMRLVGERISNPEKYRDEGPRPEFEDPSLYHYAIFSDNVIAVSVVVRSVVKNAAEPWKHVFHVVTDRMNLAAMKVWFKMRPAEGGAHVEVKAVEDYTFLNSSYVPVLRQLESAKLQKFYFENREENATKDANNMKFRNPKYLSMLNHLRFYLPEMYPKLHKILFLDDDVVVQKDLTGLWKIDLDGKVNGAVETCFGSFHRYTQYLNFSHPLIRGKFNPKACAWAYGMNIFDLDAWRREKSTEQYHYWQTLNEDRTLWRLGTLPPGLITFYSTTKSLDKSWHVLGLGYNPSISMDEINKAAVVHYNGNMKPWLDIAMNQYKSLWTKYVDNDMEFVQMCNFGL 563    
BLAST of XM_017363839.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6S7N243 (Hexosyltransferase {ECO:0000256|RuleBase:RU362027} (2.4.1.- {ECO:0000256|RuleBase:RU362027}))

HSP 1 Score: 942.569 bits (2435), Expect = 0.000e+0
Identity = 449/561 (80.04%), Postives = 501/561 (89.30%), Query Frame = 0
 
Query:    1 MAVAVRGGRG-GGSALSVGIRNFFSYRIFVSAMFTLLFLATLSVLFSSHPPPLPAHS--SSTGNAYMHRTFLALKSDPLKTRLDLIHRQANDHMALVNAYAAYARKLKLDISRQLKLFDDLAQNISDVALKPKYRTALIESDAPVDEDLLRQFEKEVKDKVKIARLMVGDAKESYDNQLKIQKLKDTIFAVNELLIKAKKSGAFASLIAAKSTPKSLHCLAMRLMGEQIANPEKFRDDAPKPEFEDPTLYHYALFSDNVIAVSVVVNSTVMNAVEKSKHVFHVVTDKMNVAAMKVWFKMQPVE-GAHVEVKAVEEYTFLNSSYVPVLKQLESAKLQKFYFENRAENATKDVNNLKFKNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTPLWRIDMEGKVNGAVETCFGSFHRYAQYLNFSHPLIRDKFSPKACAWAFGMNMFDLDAWRREKLTEEYHYWQNLNEDRTLWKSGTLPPGLMTFYSTTKSLDKSWHVLGLGYNPSISMDEINGAAVIHFNGNMKPWLDIAMNQFKSLWSKYVDNTMEFVQMCNFGL 557
            MAV  R GRG GGSA S  +R+FFSYRIFVSAMFTLLF AT SVLFSSHP     +S   +TG AYMHRTFLALKSDPLKTRLDLIH+QA+DH+ LVNAYA+YARKLKL+IS+QLK F+D+AQN SD+ LKP YRTAL ESD  VDE++LRQFEKEVKDK+KIARLM+ + KESYDNQLKIQKLKDTIFAVNELLIKAKK+GAFASLIAAKSTPKSLHCLAMRLMGE+IANPEK+RD+ PKPEFEDP+LYHYA+FSDNVIA+SVVVNS V NA E  KHVFH+VTDKMN+AAMKVWFKM+P+E GA V++KAVEE+TFLNSSYVP+L+QLESA LQK Y E          NN K +N K++SMLN+L+FYLPEMYPKLHRILFLDDDVVVQKDLT LWR+D+EGKVNGAVETCFGSFHRYAQYLNFSHPLI++KF+PKACAWAFGMN+FDLDAWRRE LT++YHYWQ+LNED +LW  GTLPPGLMTFYSTTKSL+K+WHVLGLGYNPSISMDEIN AAVIHFNGNMKPWLDIAMNQFK LW+KYVDN MEFVQMCNFGL
Sbjct:    1 MAVVARSGRGAGGSAFSSALRSFFSYRIFVSAMFTLLFFATASVLFSSHPAHFSDNSEIQTTGRAYMHRTFLALKSDPLKTRLDLIHKQASDHIVLVNAYASYARKLKLEISKQLKTFNDMAQNFSDLGLKPTYRTALFESDGAVDEEVLRQFEKEVKDKIKIARLMIAENKESYDNQLKIQKLKDTIFAVNELLIKAKKNGAFASLIAAKSTPKSLHCLAMRLMGERIANPEKYRDEEPKPEFEDPSLYHYAIFSDNVIAISVVVNSAVKNAEEPWKHVFHIVTDKMNLAAMKVWFKMRPIEGGAFVDIKAVEEFTFLNSSYVPLLRQLESANLQKIYLE----------NNTKSENTKHISMLNYLKFYLPEMYPKLHRILFLDDDVVVQKDLTGLWRVDLEGKVNGAVETCFGSFHRYAQYLNFSHPLIKEKFNPKACAWAFGMNIFDLDAWRREGLTDQYHYWQDLNEDESLWDMGTLPPGLMTFYSTTKSLEKTWHVLGLGYNPSISMDEINNAAVIHFNGNMKPWLDIAMNQFKHLWTKYVDNEMEFVQMCNFGL 551    
Match NameStatsDescription
M0ZLT9E-Value: 0.000e+0, PID: 79.71Hexosyltransferase {ECO:0000256|RuleBase:RU362027}... [more]
A0A1S4A3S7E-Value: 0.000e+0, PID: 81.85Hexosyltransferase {ECO:0000256|RuleBase:RU362027}... [more]
A0A314L421E-Value: 0.000e+0, PID: 81.67Hexosyltransferase {ECO:0000256|RuleBase:RU362027}... [more]
A0A1U7XM91E-Value: 0.000e+0, PID: 81.67Hexosyltransferase {ECO:0000256|RuleBase:RU362027}... [more]
A0A1S4D1G7E-Value: 0.000e+0, PID: 81.48Hexosyltransferase {ECO:0000256|RuleBase:RU362027}... [more]
A0A2P5ALY8E-Value: 0.000e+0, PID: 83.92Hexosyltransferase {ECO:0000256|RuleBase:RU362027}... [more]
A0A2J6KSK3E-Value: 0.000e+0, PID: 80.21Hexosyltransferase {ECO:0000256|RuleBase:RU362027}... [more]
A0A103XKV1E-Value: 0.000e+0, PID: 81.82Hexosyltransferase {ECO:0000256|RuleBase:RU362027}... [more]
A0A2P5CAL1E-Value: 0.000e+0, PID: 83.73Hexosyltransferase {ECO:0000256|RuleBase:RU362027}... [more]
A0A6S7N243E-Value: 0.000e+0, PID: 80.04Hexosyltransferase {ECO:0000256|RuleBase:RU362027}... [more]
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Analysis: 
NameDescription

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.

This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.
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