XM_017359755.1 | CarrotOmics

Resource Type:

Polypeptide

Name:

XM_017359755.1

Identifier:

XM_017359755.1-protein

Sequence:

MLHTKSESDVTSLATSSPSRSSPKRAAYFVQSPSRDSHDGDKSSSMQPTP
NFNSPMESPSHPSYGRHSRNSSSSRFSGIFRSSSGRKGGKRRNDKGWPEC
NVIVEEGDYDDENRFTRRYQALIALLGFIVLFTVFCLIIWGAARPFKAEV
TVKSLAVNNIFVGMGPDFTGVPTNMLTVNGTLRLSIYNPATFFGIRVSST
PVDLIYSDVVVATGQLKKYFQPRKSHRIVLVNLEGLRVPLYGAGSAIIET
KTGGYQVPLDLKFEIRSRGDVVGKLVTTRHRRHISCSLVIDTVKSKPIKF
KKNSCDYR

Sequence Length:

308

Sequence Checksum:

fa67c68ebb0d8002124628dcc742ea2b

View location in JBrowse:

DCARv2_Chr7:35416254..35417594-

Organism:

Daucus carota subspecies sativus

Relationship:

There is 1 relationship.
Relationships
The polypeptide, XM_017359755.1, derives from mRNA, XM_017359755.1.

Blast Results:

The following BLAST results are available for this feature:

BLAST of XM_017359755.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR

BLAST of XM_017359755.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10

[Close]

BLAST of XM_017359755.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BGA6 (LEA_2 domain-containing protein {ECO:0000259|Pfam:PF03168})

HSP 1 Score: 499.975 bits (1286), Expect = 7.213e-178
Identity = 237/310 (76.45%), Postives = 274/310 (88.39%), Query Frame = 0

Query:    1 MLHTKSESDVTSLATSSPSRSSPKRAAYFVQSPSRDSHDGDKSSSMQPTPNFNSPMESPSHPSYGRHSRNSSSSRFSGIFRSSSGRKGGKRRNDKGWPECNVIVEEGDYD---DENRFTRRYQALIALLGFIVLFTVFCLIIWGAARPFKAEVTVKSLAVNNIFVGMGPDFTGVPTNMLTVNGTLRLSIYNPATFFGIRVSSTPVDLIYSDVVVATGQLKKYFQPRKSHRIVLVNLEGLRVPLYGAGSAIIETKTGGYQVPLDLKFEIRSRGDVVGKLVTTRHRRHISCSLVIDTVKSKPIKFKKNSCDY 307
            M+HTKSESD+TSL  SSPSR       Y+VQSPSRDSHDGDKSSSMQ TPN+NSPMESPSHPS+GRHSRNSS+SRFSGIFRSSSGRKGG++RNDKGWPECNVI+EEG YD   D+ RFTRR+QAL+A+L F+VLFTVFCLIIWGA+RP+KAEV+VKSLAV+NI++G G DFTGVPT MLTVNG+LR++IYNPATFFG+ VSSTPV+L+YSD+VVATGQL KYFQPRKSHRIV VNLEG +VPLYGAGS++  +  G  +VPL L+FEIR+RGDVVGKLV TRHRR ISC LVID+  +KPIKFKK+SC Y
Sbjct:    1 MMHTKSESDITSLDPSSPSR-----PVYYVQSPSRDSHDGDKSSSMQATPNYNSPMESPSHPSFGRHSRNSSASRFSGIFRSSSGRKGGRKRNDKGWPECNVILEEGKYDEFDDDKRFTRRFQALMAMLSFVVLFTVFCLIIWGASRPYKAEVSVKSLAVSNIYIGEGSDFTGVPTKMLTVNGSLRMNIYNPATFFGVHVSSTPVNLLYSDIVVATGQLMKYFQPRKSHRIVSVNLEGTKVPLYGAGSSLTASNDGTVEVPLTLQFEIRARGDVVGKLVRTRHRRQISCPLVIDSTSAKPIKFKKDSCIY 305

[Close]

BLAST of XM_017359755.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A5I0 (LEA_2 domain-containing protein {ECO:0000259|Pfam:PF03168})

HSP 1 Score: 495.738 bits (1275), Expect = 3.490e-176
Identity = 235/310 (75.81%), Postives = 269/310 (86.77%), Query Frame = 0

Query:    1 MLHTKSESDVTSLATSSPSRSSPKRAAYFVQSPSRDSHDGDKSSSMQPTPNFNSPMESPSHPSYGRHSRNSSSSRFSGIFRSSSGRKGGKRRNDKGWPECNVIVEEGDYD---DENRFTRRYQALIALLGFIVLFTVFCLIIWGAARPFKAEVTVKSLAVNNIFVGMGPDFTGVPTNMLTVNGTLRLSIYNPATFFGIRVSSTPVDLIYSDVVVATGQLKKYFQPRKSHRIVLVNLEGLRVPLYGAGSAIIETKTGGYQVPLDLKFEIRSRGDVVGKLVTTRHRRHISCSLVIDTVKSKPIKFKKNSCDY 307
            M+HTKSESD+TSL  SSPSR       Y+VQSPSRDS DGDKSS+MQ TPN+NSPMESPSHPS+GRHSRNSS+SRFSGIFRSSSGRKG ++RNDKGWPECNVI+EEG YD   D+ RFTRR+QAL+ALL F++LFTVFCLIIWGA RP+KAEV+VKSLAVNNI++G G D TGVPT MLTVNG+LR+SIYNPATFFGI VSSTPV+LIYS++ VATGQLKKYFQPRKSHR V VNLEG +VPLYGAGS+++     G +VPL L+FEIRSRG+VVGKLV TRHRR ISC LV+D+  +KPIKFKKNSC Y
Sbjct:    1 MMHTKSESDITSLDPSSPSRQ-----VYYVQSPSRDSQDGDKSSTMQATPNYNSPMESPSHPSFGRHSRNSSASRFSGIFRSSSGRKGSRKRNDKGWPECNVILEEGKYDELDDDKRFTRRFQALMALLSFVLLFTVFCLIIWGAGRPYKAEVSVKSLAVNNIYIGEGSDSTGVPTKMLTVNGSLRMSIYNPATFFGIHVSSTPVNLIYSEITVATGQLKKYFQPRKSHRPVSVNLEGTKVPLYGAGSSLVAVSNNGVEVPLTLQFEIRSRGEVVGKLVKTRHRRQISCPLVVDSTSTKPIKFKKNSCTY 305

[Close]

BLAST of XM_017359755.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9SR86 ((uncharacterized protein LOC105157642 {ECO:0000313|RefSeq:XP_011072365.1}))

HSP 1 Score: 495.352 bits (1274), Expect = 5.080e-176
Identity = 238/310 (76.77%), Postives = 271/310 (87.42%), Query Frame = 0

Query:    1 MLHTKSESDVTSLATSSPSRSSPKRAAYFVQSPSRDSHDGDKSSSMQPTPNFNSPMESPSHPSYGRHSRNSSSSRFSGIFRSSSGRKGGKRRNDKGWPECNVIVEEGDYD---DENRFTRRYQALIALLGFIVLFTVFCLIIWGAARPFKAEVTVKSLAVNNIFVGMGPDFTGVPTNMLTVNGTLRLSIYNPATFFGIRVSSTPVDLIYSDVVVATGQLKKYFQPRKSHRIVLVNLEGLRVPLYGAGSAIIETKTGGYQVPLDLKFEIRSRGDVVGKLVTTRHRRHISCSLVIDTVKSKPIKFKKNSCDY 307
            MLHTKSESD+TSLA SSPSRS PKR  Y+VQSPSRDSHDGDKSSSM  TPNFNSPMESPSHPS+GRHSRNSS+SRFSGIFRSSSGRKGG++RNDKGWPECNVIVEEG+YD   D+  FTRR QAL+AL GFIVLFTVFCLIIWGA RP+KAEV VKSL VNN+++G G DFTGVPT ML VNG+LR+S+YNPATF+GI VS+TPV+LIYSDVVVATGQLKKY+Q RKS + VLV++EG +VPLYGAGS ++ +     QVPL L+FEIRSRGDVVGKLV T+H R +SCSLVID+  +KPIKFKK+SC Y
Sbjct:    1 MLHTKSESDITSLAPSSPSRS-PKRPVYYVQSPSRDSHDGDKSSSMHATPNFNSPMESPSHPSFGRHSRNSSASRFSGIFRSSSGRKGGRKRNDKGWPECNVIVEEGNYDEFDDDKAFTRRCQALMALCGFIVLFTVFCLIIWGAGRPYKAEVAVKSLTVNNLYLGSGADFTGVPTKMLNVNGSLRISVYNPATFYGIHVSATPVNLIYSDVVVATGQLKKYYQHRKSRKNVLVHIEGTKVPLYGAGSNLVVSSNNAVQVPLTLEFEIRSRGDVVGKLVRTKHHRRVSCSLVIDSTSNKPIKFKKDSCTY 309

[Close]

BLAST of XM_017359755.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068TNW5 (LEA_2 domain-containing protein {ECO:0000259|Pfam:PF03168})

HSP 1 Score: 494.197 bits (1271), Expect = 1.262e-175
Identity = 237/311 (76.21%), Postives = 275/311 (88.42%), Query Frame = 0

Query:    1 MLHTKSESDVTSLATSSPSRSSPKRAAYFVQSPSRDSHDGDKSSSMQPTPNFNSPMESPSHPSYGRHSRNSSSSRFSGIFRSSSGRKGGKRRNDKGWPECNVIVEEGDYD---DENRFTRRYQALIALLGFIVLFTVFCLIIWGAARPFKAEVTVKSLAVNNIFVGMGPDFTGVPTNMLTVNGTLRLSIYNPATFFGIRVSSTPVDLIYSDVVVATGQLKKYFQPRKSHRIVLVNLEGLRVPLYGAGSAIIETKTGGYQVPLDLKFEIRSRGDVVGKLVTTRHRRHISCSLVIDTVKSKPIKFKKNSCDYR 308
            MLH KSESD+TSLA SSPSRS PKR  YFVQSPSRDS+DGDKS+SMQPTP+FNSPMESPSHPS+GRHSRNSS+SRFSGIFRSSSGRKGG++RNDKGWPECNVIVEEG YD   D+  FTRR+QAL+AL GFIVLFTVFCLIIWGA R ++AEV+VKSL V+N+++G G DFTGVPT M TVNGTLR++IYNPATF+GI VSS+PV+LIYSD+VVAT ++KKY+QPRKSHR VLV++EG +VPLYGAGS ++E+  G  +VPL L F IRSRGDVVGKLV T+HRRH+SCSLVID+  SKPIKF K+SC YR
Sbjct:    1 MLHAKSESDITSLAPSSPSRS-PKRPVYFVQSPSRDSNDGDKSASMQPTPSFNSPMESPSHPSFGRHSRNSSASRFSGIFRSSSGRKGGRKRNDKGWPECNVIVEEGKYDEFDDDKGFTRRFQALMALCGFIVLFTVFCLIIWGAGRNYRAEVSVKSLVVHNVYMGSGSDFTGVPTKMFTVNGTLRMAIYNPATFYGIHVSSSPVNLIYSDIVVATAEMKKYYQPRKSHRTVLVDIEGTKVPLYGAGSNLVESVNGVVRVPLTLDFWIRSRGDVVGKLVRTKHRRHVSCSLVIDSTISKPIKFLKDSCVYR 310

[Close]

BLAST of XM_017359755.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A3H7 (LEA_2 domain-containing protein {ECO:0000259|Pfam:PF03168})

HSP 1 Score: 493.041 bits (1268), Expect = 3.590e-175
Identity = 235/310 (75.81%), Postives = 273/310 (88.06%), Query Frame = 0

Query:    1 MLHTKSESDVTSLATSSPSRSSPKRAAYFVQSPSRDSHDGDKSSSMQPTPNFNSPMESPSHPSYGRHSRNSSSSRFSGIFRSSSGRKGGKRRNDKGWPECNVIVEEGDYD---DENRFTRRYQALIALLGFIVLFTVFCLIIWGAARPFKAEVTVKSLAVNNIFVGMGPDFTGVPTNMLTVNGTLRLSIYNPATFFGIRVSSTPVDLIYSDVVVATGQLKKYFQPRKSHRIVLVNLEGLRVPLYGAGSAIIETKTGGYQVPLDLKFEIRSRGDVVGKLVTTRHRRHISCSLVIDTVKSKPIKFKKNSCDY 307
            M+HTKSESD+TSL  SSPSR       Y+VQSPSRDS DGDKSS+MQ TPN+NSPMESPSHPS+GRHSRNSS+SRFSGIFRSSSGRKG ++RNDKGWPECNVI+EEG YD   D+ RFTRR+QAL+ALL F++LFTVFCLIIWGA RP+KAEV+VKSLAVNNI++G G D TGVPT MLTVNG+LR+SIYNPATFFG+ VSSTPV+LIYS++VVATGQLKKYFQPRKSHRIV VNLEG +VPLYGAGS+++ +   G +VPL L+FEIRSRGDVVGKLV TRH+R +SC LVID+ ++KPIKFKK+SC Y
Sbjct:    1 MMHTKSESDITSLDPSSPSRQ-----VYYVQSPSRDSQDGDKSSTMQATPNYNSPMESPSHPSFGRHSRNSSASRFSGIFRSSSGRKGSRKRNDKGWPECNVILEEGKYDELDDDKRFTRRFQALMALLSFVLLFTVFCLIIWGAGRPYKAEVSVKSLAVNNIYIGEGSDSTGVPTKMLTVNGSLRMSIYNPATFFGVHVSSTPVNLIYSEIVVATGQLKKYFQPRKSHRIVSVNLEGTKVPLYGAGSSLVASDN-GVEVPLTLQFEIRSRGDVVGKLVRTRHQRQVSCPLVIDSTRTKPIKFKKDSCIY 304

[Close]

BLAST of XM_017359755.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S3Z2I3 ((uncharacterized protein LOC107782301 {ECO:0000313|RefSeq:XP_016458656.1}))

HSP 1 Score: 491.115 bits (1263), Expect = 2.378e-174
Identity = 233/311 (74.92%), Postives = 274/311 (88.10%), Query Frame = 0

Query:    1 MLHTKSESDVTSLATSSPSRSSPKRAAYFVQSPSRDSHDGDKSSSMQPTPNFNSPMESPSHPSYGRHSRNSSSSRFSGIFRSSSGRKGGKRRNDKGWPECNVIVEEGDYD--DENR-FTRRYQALIALLGFIVLFTVFCLIIWGAARPFKAEVTVKSLAVNNIFVGMGPDFTGVPTNMLTVNGTLRLSIYNPATFFGIRVSSTPVDLIYSDVVVATGQLKKYFQPRKSHRIVLVNLEGLRVPLYGAGSAIIETKTGGYQVPLDLKFEIRSRGDVVGKLVTTRHRRHISCSLVIDTVKSKPIKFKKNSCDYR 308
            MLHTKSESD+TSLA SSPSRS PKR  Y+VQSPSRDSHDGDKS+SMQPTP+FNSPMESPSHPS+GRHSRNSS+SRFSGIFRSSSGRK G++RNDKGWPECNVI+EEG YD  DE++  TRR QAL+ALLGFIVLF++FCLIIWGA RP+KAE+TV+SLAVNN ++G G DF+GV T M+TVNG+LR+S+YNPATF+GI VSSTP++LIYSD+ VA+GQLKKY+QPRKS R VLVN+E  + PLYGAGS +  +  GG++VPL L FEIRSRGDVVGKLV T+++R ISC LVID+  +KPIKFKKNSC YR
Sbjct:    1 MLHTKSESDITSLAPSSPSRS-PKRPVYYVQSPSRDSHDGDKSTSMQPTPSFNSPMESPSHPSFGRHSRNSSASRFSGIFRSSSGRKNGRKRNDKGWPECNVIMEEGKYDEYDEDKGVTRRCQALLALLGFIVLFSIFCLIIWGAGRPYKAEITVRSLAVNNFYIGEGSDFSGVVTKMMTVNGSLRISVYNPATFYGIHVSSTPINLIYSDITVASGQLKKYYQPRKSRRTVLVNIESTKFPLYGAGSGLDASNNGGFKVPLKLDFEIRSRGDVVGKLVRTKNKRQISCDLVIDSTSTKPIKFKKNSCVYR 310

[Close]

BLAST of XM_017359755.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4F214 (LEA_2 domain-containing protein {ECO:0000259|Pfam:PF03168})

HSP 1 Score: 490.73 bits (1262), Expect = 3.026e-174
Identity = 233/310 (75.16%), Postives = 272/310 (87.74%), Query Frame = 0

Query:    1 MLHTKSESDVTSLATSSPSRSSPKRAAYFVQSPSRDSHDGDKSSSMQPTPNFNSPMESPSHPSYGRHSRNSSSSRFSGIFRSSSGRKGGKRRNDKGWPECNVIVEEG---DYDDENRFTRRYQALIALLGFIVLFTVFCLIIWGAARPFKAEVTVKSLAVNNIFVGMGPDFTGVPTNMLTVNGTLRLSIYNPATFFGIRVSSTPVDLIYSDVVVATGQLKKYFQPRKSHRIVLVNLEGLRVPLYGAGSAIIETKTGGYQVPLDLKFEIRSRGDVVGKLVTTRHRRHISCSLVIDTVKSKPIKFKKNSCDY 307
            MLHTKSESD+TSLA SSPSRS PKR  Y+VQSPSRDS DGDKSS+MQPTPN+NSPMESPSHPS+GRHSRNSS+SRFSGIFRSSSG KGG++RNDKGWPECNVI+EEG   +YDD+ RFTRR+QAL+ALL F+VLFTVFCLIIWGAARP+K EV+VKSL VNNI+VG G D TGVPT MLT+NG+LR+ +YNPATFFGI VSS P++L+YS + VATGQLKKY+QPRKSHRI +V LEG +VPLYGAGS+++ +   G QVPL L+FEIRSRG+VVGKLVTT++R  ISC LVID+  +KPI FKK+SC Y
Sbjct:    1 MLHTKSESDITSLAPSSPSRS-PKRPVYYVQSPSRDSQDGDKSSTMQPTPNYNSPMESPSHPSFGRHSRNSSASRFSGIFRSSSGGKGGRKRNDKGWPECNVILEEGKYEEYDDDKRFTRRFQALLALLSFVVLFTVFCLIIWGAARPYKTEVSVKSLTVNNIYVGEGSDSTGVPTKMLTLNGSLRIGVYNPATFFGIHVSSMPINLVYSQISVATGQLKKYYQPRKSHRITVVILEGTKVPLYGAGSSLVPSINNGVQVPLKLQFEIRSRGNVVGKLVTTKNRVQISCPLVIDSTSTKPISFKKDSCFY 309

[Close]

BLAST of XM_017359755.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M0ZRY1 ((Harpin-induced protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400006760}))

HSP 1 Score: 490.345 bits (1261), Expect = 5.409e-174
Identity = 229/310 (73.87%), Postives = 271/310 (87.42%), Query Frame = 0

Query:    1 MLHTKSESDVTSLATSSPSRSSPKRAAYFVQSPSRDSHDGDKSSSMQPTPNFNSPMESPSHPSYGRHSRNSSSSRFSGIFRSSSGRKGGKRRNDKGWPECNVIVEEGDYDD---ENRFTRRYQALIALLGFIVLFTVFCLIIWGAARPFKAEVTVKSLAVNNIFVGMGPDFTGVPTNMLTVNGTLRLSIYNPATFFGIRVSSTPVDLIYSDVVVATGQLKKYFQPRKSHRIVLVNLEGLRVPLYGAGSAIIETKTGGYQVPLDLKFEIRSRGDVVGKLVTTRHRRHISCSLVIDTVKSKPIKFKKNSCDY 307
            MLH KSESD+TSLA SSPSRS PKR  Y+VQSPSRDS DGDKS+SMQPTP+FNSPMESPSHPS+GRHSRNSS+SRFSGIFRSSSGRK G++RNDKGWPECNVI+EEG YD+   E   TRR QAL+ALLGF+VLFT+FCLIIWGA RPFKAE+TV+S+ VNN +VG G DFTGV T M+TVN +LR+S+YNPATF+GI V+STP++LIYSD+VVA+GQLKKYFQPRKS R VLV++E  +VPLYGAGS++     GG++VPL L+FEI+SRGDVVGKLV T+H++ ISC LVID++ +KPIKFKKNSC Y
Sbjct:    1 MLHAKSESDITSLAPSSPSRS-PKRPVYYVQSPSRDSQDGDKSASMQPTPSFNSPMESPSHPSFGRHSRNSSASRFSGIFRSSSGRKNGRKRNDKGWPECNVILEEGKYDEFDEEKGLTRRCQALLALLGFVVLFTIFCLIIWGAGRPFKAEITVRSMVVNNFYVGEGSDFTGVVTKMMTVNASLRISVYNPATFYGIHVTSTPINLIYSDIVVASGQLKKYFQPRKSRRTVLVSIEATKVPLYGAGSSLDAATNGGFKVPLKLEFEIKSRGDVVGKLVRTKHKKEISCDLVIDSISTKPIKFKKNSCVY 309

[Close]

BLAST of XM_017359755.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1J6JDZ1 (LEA_2 domain-containing protein {ECO:0000259|Pfam:PF03168})

HSP 1 Score: 489.574 bits (1259), Expect = 9.774e-174
Identity = 230/310 (74.19%), Postives = 272/310 (87.74%), Query Frame = 0

Query:    1 MLHTKSESDVTSLATSSPSRSSPKRAAYFVQSPSRDSHDGDKSSSMQPTPNFNSPMESPSHPSYGRHSRNSSSSRFSGIFRSSSGRKGGKRRNDKGWPECNVIVEEG---DYDDENRFTRRYQALIALLGFIVLFTVFCLIIWGAARPFKAEVTVKSLAVNNIFVGMGPDFTGVPTNMLTVNGTLRLSIYNPATFFGIRVSSTPVDLIYSDVVVATGQLKKYFQPRKSHRIVLVNLEGLRVPLYGAGSAIIETKTGGYQVPLDLKFEIRSRGDVVGKLVTTRHRRHISCSLVIDTVKSKPIKFKKNSCDY 307
            MLHTKSESD+TSLA SSPSRS PKR  Y+VQSPSRDSHDGDKS+SMQPTP+FNSPMESPSHPS+GRHSRNSS+SRFSGIFRSSSGRK G++RNDKGWPECNVI+EEG   +YD+E   TRR QAL+ALLGFIVLF++FCLIIWGA RP+KAE+TV+SLAVNN ++G G DF+GV T M+TVNG+LR+S+YNPATF+GI VSSTP++LIYSD+ VA+GQLKKY+QPRKS R VLVN+E  + PLYGAGS +  +  GG++VPL L FEIRSRGDVVGKLV T++++ ISC LVID+  +KPIKFKKNSC Y
Sbjct:    1 MLHTKSESDITSLAPSSPSRS-PKRPVYYVQSPSRDSHDGDKSTSMQPTPSFNSPMESPSHPSFGRHSRNSSASRFSGIFRSSSGRKNGRKRNDKGWPECNVIMEEGKYDEYDEEKGVTRRCQALLALLGFIVLFSIFCLIIWGAGRPYKAEITVRSLAVNNFYIGEGSDFSGVVTKMMTVNGSLRISVYNPATFYGIHVSSTPINLIYSDITVASGQLKKYYQPRKSRRTVLVNIESTKFPLYGAGSGLDASNNGGFKVPLKLDFEIRSRGDVVGKLVRTKNKKQISCDLVIDSTSTKPIKFKKNSCVY 309

[Close]

BLAST of XM_017359755.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S4C5E9 ((uncharacterized protein LOC107815355 {ECO:0000313|RefSeq:XP_016496410.1}))

HSP 1 Score: 488.419 bits (1256), Expect = 3.227e-173
Identity = 231/310 (74.52%), Postives = 271/310 (87.42%), Query Frame = 0

Query:    1 MLHTKSESDVTSLATSSPSRSSPKRAAYFVQSPSRDSHDGDKSSSMQPTPNFNSPMESPSHPSYGRHSRNSSSSRFSGIFRSSSGRKGGKRRNDKGWPECNVIVEEG---DYDDENRFTRRYQALIALLGFIVLFTVFCLIIWGAARPFKAEVTVKSLAVNNIFVGMGPDFTGVPTNMLTVNGTLRLSIYNPATFFGIRVSSTPVDLIYSDVVVATGQLKKYFQPRKSHRIVLVNLEGLRVPLYGAGSAIIETKTGGYQVPLDLKFEIRSRGDVVGKLVTTRHRRHISCSLVIDTVKSKPIKFKKNSCDY 307
            MLHTKSESD+TSLA SSPSRS PKR  Y+VQSPSRDSHDGDKS+ MQPTP+FNSPMESPSHPS+GRHSRNSS+SRFSGIFRSSSGRK G++RNDKGWPECNVI+EEG   +YDD+   TRR QAL+ALLGFIVLF++FCLIIWGA RP+KAE+TV+SLAVNN ++G G DF+GV T M+TVNG+LR+S+YNPATF+GI VSSTPV+LIYSD+ VA+GQLKKY+QPRKS R VLVN+E  + PLYGAGS +  +  GG++VPL L FEIRSRGDVVGKLV T++++ ISC LVID+  SKPIKFKKNSC Y
Sbjct:    1 MLHTKSESDITSLAPSSPSRS-PKRPVYYVQSPSRDSHDGDKSTYMQPTPSFNSPMESPSHPSFGRHSRNSSASRFSGIFRSSSGRKNGRKRNDKGWPECNVIMEEGKYDEYDDDKGVTRRCQALLALLGFIVLFSIFCLIIWGAGRPYKAEITVRSLAVNNFYIGEGSDFSGVVTKMMTVNGSLRISVYNPATFYGIHVSSTPVNLIYSDITVASGQLKKYYQPRKSRRAVLVNIESTKFPLYGAGSGLDASNNGGFKVPLKLDFEIRSRGDVVGKLVRTKNKKQISCDLVIDSTSSKPIKFKKNSCVY 309


Match Name	Stats	Description
A0A5J5BGA6	E-Value: 7.213e-178, PID: 76.45	LEA_2 domain-containing protein {ECO:0000259\|Pfam:... [more]
A0A5B7A5I0	E-Value: 3.490e-176, PID: 75.81	LEA_2 domain-containing protein {ECO:0000259\|Pfam:... [more]
A0A6I9SR86	E-Value: 5.080e-176, PID: 76.77	(uncharacterized protein LOC105157642 {ECO:0000313... [more]
A0A068TNW5	E-Value: 1.262e-175, PID: 76.21	LEA_2 domain-containing protein {ECO:0000259\|Pfam:... [more]
A0A5B7A3H7	E-Value: 3.590e-175, PID: 75.81	LEA_2 domain-containing protein {ECO:0000259\|Pfam:... [more]
A0A1S3Z2I3	E-Value: 2.378e-174, PID: 74.92	(uncharacterized protein LOC107782301 {ECO:0000313... [more]
A0A4S4F214	E-Value: 3.026e-174, PID: 75.16	LEA_2 domain-containing protein {ECO:0000259\|Pfam:... [more]
M0ZRY1	E-Value: 5.409e-174, PID: 73.87	(Harpin-induced protein {ECO:0000313\|EnsemblPlants... [more]
A0A1J6JDZ1	E-Value: 9.774e-174, PID: 74.19	LEA_2 domain-containing protein {ECO:0000259\|Pfam:... [more]
A0A1S4C5E9	E-Value: 3.227e-173, PID: 74.52	(uncharacterized protein LOC107815355 {ECO:0000313... [more]

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100	The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR	This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.