XM_017367255.1

Resource Type: 
Polypeptide
Name: 
XM_017367255.1
Identifier: 
XM_017367255.1-protein
Sequence: 
MNYKINQNPFIFAALLLVFLTFLSSCEAYSFNGRLSESEVHYIKHRQLLY
YKDEFGDRGENVAVDPALVFENPRLRSAYIALQAWKQAIISDPLNLTGNW
VGSEVCNYTGVFCAPAPENKSDQTVAGIDLNHGDIAGYLPEELGLLTDLA
LFHINSNRFCGTVPKKFKKLKILYELDISNNRFAGKFPYVVLDLPNLKFL
DLRFNEFEGKVPKALFDKNLDAIFINHNRFKFSIPENFGNSPVSVVVLAG
NDFKGCLPASIGNMSKTLNEVIMMDNGLRSCFPSSIGLLKELTVLDVSYN
ELVGPLPDSLGGMKSLEQLNVGHNMLSGAIPESICDLPRLQNFSYEYNFF
TGEPPVCLRVPEFSDRRNCLKGRPGQRSGGQCKGFLRKKVDCSAFKCEPF
VPSLPAPPPPSPPVPVPSPPVYVPPPVPVPVPSPPVYVPPSPPPVYSPPP
QVYSPPPPVYSPPPPPPVYSPPPPPPVYSPPPPPPSPPPPVYSPPPPPPP
PPPVYSPPPSPPPPPPSPPPPVYSPPPPPPSPPPPVYSPPPPPPSPPPPS
PPPPVYSPPPPPPPPPPVYPSPPPPSPPPPVYSSPPPPSPPPPVYSPPPP
PPTTYPPCIRSPPPPSPSPPPPPVYSPPMPYIYNSPPPPSPHSPPPPPHS
PPPPHSPPPPPTYIYSSPPPPPPQHSPPPPSPPPCIEPPPPPPPCSEYSS
PPPPTPVPYHPPQSPPPPPPPSSPVYSSPPPPVHHHSPPPPVVHHHSPPP
PIMIPPPPVFEGPLPPIFGVSYASPPPPPFY
Sequence Length: 
781
Sequence Checksum: 
7b79a3c7429ec2c1be2b4188fc5a2ff4
View location in JBrowse: 
DCARv2_Chr8:2245300..2247645-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017367255.1, derives from mRNA, XM_017367255.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017367255.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017367255.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZB20 ((Putative leucine-rich repeat extensin-like protein 4 {ECO:0000313|EMBL:MPA40988.1}) (2.7.11.1 {ECO:0000313|EMBL:MPA40988.1}) (Fragment))

HSP 1 Score: 645.58 bits (1664), Expect = 0.000e+0
Identity = 297/397 (74.81%), Postives = 335/397 (84.38%), Query Frame = 0
 
Query:   10 FIFAALLLVFLTFL-----SSCEA----YSFNGRLSESEVHYIKHRQLLYYKDEFGDRGENVAVDPALVFENPRLRSAYIALQAWKQAIISDPLNLTGNWVGSEVCNYTGVFCAPAPENKSDQTVAGIDLNHGDIAGYLPEELGLLTDLALFHINSNRFCGTVPKKFKKLKILYELDISNNRFAGKFPYVVLDLPNLKFLDLRFNEFEGKVPKALFDKNLDAIFINHNRFKFSIPENFGNSPVSVVVLAGNDFKGCLPASIGNMSKTLNEVIMMDNGLRSCFPSSIGLLKELTVLDVSYNELVGPLPDSLGGMKSLEQLNVGHNMLSGAIPESICDLPRLQNFSYEYNFFTGEPPVCLRVPEFSDRRNCLKGRPGQRSGGQCKGFLRKKVDCSAFKC 397
            F F+ L L F+ FL     SSC +     S NG LS++E  YIK RQLLYY+DEFGDRGENV VDP+LVFENPRLR AYIALQAWKQAI+SDPLNLTGNWVGS+VC Y  VFCAPAP+N+S +TVAGIDLNHGDIAGYLPEELGLLTDLALFHINSNRFCGTVP KFK LK+LYELD+SNNRFAGKFP+VVL LP+LKFLDLRFNEFEG VP+ LFDK LDAIFINHNRF F +P+NFGNSPVSV+VLA N F GC+PAS+GNM  TLNE+I+M+NG RSC P  IGLLK+LTVLD+S+N+L+GPLPD++ GM SLEQLNV HNMLSG+IP SIC LPRLQNF++ YNFFTGEPPVCL +P   DRRNCL  RP QRS  QCK FL K VDCS+F+C
Sbjct:   93 FYFSLLSLDFILFLLFVSFSSCHSKHVHISRNGGLSDAEAMYIKQRQLLYYRDEFGDRGENVTVDPSLVFENPRLRDAYIALQAWKQAILSDPLNLTGNWVGSDVCGYKYVFCAPAPDNQSIRTVAGIDLNHGDIAGYLPEELGLLTDLALFHINSNRFCGTVPHKFKHLKLLYELDLSNNRFAGKFPHVVLKLPSLKFLDLRFNEFEGSVPRELFDKPLDAIFINHNRFVFDLPDNFGNSPVSVIVLANNKFHGCIPASLGNMKDTLNEIILMNNGFRSCLPPEIGLLKDLTVLDMSFNQLMGPLPDTIAGMVSLEQLNVAHNMLSGSIPASICKLPRLQNFTFSYNFFTGEPPVCLSLPSSDDRRNCLPARPAQRSAAQCKAFLSKPVDCSSFRC 489
[Close]
BLAST of XM_017367255.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G5DGE8 (LRRNT_2 domain-containing protein {ECO:0000259|Pfam:PF08263})

HSP 1 Score: 641.728 bits (1654), Expect = 0.000e+0
Identity = 288/396 (72.73%), Postives = 336/396 (84.85%), Query Frame = 0
 
Query:   10 FIFAALLLVFLTFLSSCEA--YSFNGRLSESEVHYIKHRQLLYYKDEFGDRGENVAVDPALVFENPRLRSAYIALQAWKQAIISDPLNLTGNWVGSEVCNYTGVFCAPAPENKSDQTVAGIDLNHGDIAGYLPEELGLLTDLALFHINSNRFCGTVPKKFKKLKILYELDISNNRFAGKFPYVVLDLPNLKFLDLRFNEFEGKVPKALFDKNLDAIFINHNRFKFSIPENFGNSPVSVVVLAGNDFKGCLPASIGNMSKTLNEVIMMDNGLRSCFPSSIGLLKELTVLDVSYNELVGPLPDSLGGMKSLEQLNVGHNMLSGAIPESICDLPRLQNFSYEYNFFTGEPPVCLRVPEFSDRRNCLKGRPGQRSGGQCKGFLRKKVDCSAFKCEPFVPS 403
            F F +   + L  +SS +    S    LS++EV YI+HRQLLYY+DEFGDRGENV++DP+LVFEN R+++AYIALQAWKQAIISDPLNLTGNW+GS+VC+YTGVFC+ A +  S +TVAGIDLNHGDIAGYLPEELGLL DLALFH+NSNRFCGT+P+KF+KLK+L+ELD+SNNR AG+FP VVL LP+LKFLDLRFNEFEG VP+ LFDK+LDAIFIN NRF+F +P NFGNSPVSV+VLA N F GCLPAS+GNM+ TLNE+IMM+NGLRSC P  IGLLK LTV DVSYNEL+GPLP+++GGMK LEQLNV HNMLSG+IP SIC LP LQNF+Y YNF TGEPPVCL V +F D+RNCL GRP QRS  QCKGF  + VDCS+FKC PFVPS
Sbjct:   11 FFFLSYFNILLVSISSSQETFISTQNDLSDAEVKYIRHRQLLYYRDEFGDRGENVSIDPSLVFENSRIKNAYIALQAWKQAIISDPLNLTGNWIGSDVCSYTGVFCSQALDKPSIRTVAGIDLNHGDIAGYLPEELGLLVDLALFHVNSNRFCGTIPRKFEKLKLLFELDLSNNRLAGRFPGVVLKLPSLKFLDLRFNEFEGSVPRELFDKDLDAIFINDNRFQFDLPSNFGNSPVSVIVLANNKFHGCLPASLGNMAGTLNEIIMMNNGLRSCLPKEIGLLKSLTVFDVSYNELMGPLPETIGGMKGLEQLNVAHNMLSGSIPSSICLLPSLQNFTYSYNFITGEPPVCLGVSDFDDKRNCLPGRPAQRSARQCKGFASQNVDCSSFKCAPFVPS 406
[Close]
BLAST of XM_017367255.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6Z9P5 ((Putative leucine-rich repeat extensin-like protein 4 {ECO:0000313|EMBL:MPA40992.1}) (2.7.11.1 {ECO:0000313|EMBL:MPA40992.1}))

HSP 1 Score: 640.573 bits (1651), Expect = 0.000e+0
Identity = 297/397 (74.81%), Postives = 335/397 (84.38%), Query Frame = 0
 
Query:   10 FIFAALLLVFLTFL-----SSCEA----YSFNGRLSESEVHYIKHRQLLYYKDEFGDRGENVAVDPALVFENPRLRSAYIALQAWKQAIISDPLNLTGNWVGSEVCNYTGVFCAPAPENKSDQTVAGIDLNHGDIAGYLPEELGLLTDLALFHINSNRFCGTVPKKFKKLKILYELDISNNRFAGKFPYVVLDLPNLKFLDLRFNEFEGKVPKALFDKNLDAIFINHNRFKFSIPENFGNSPVSVVVLAGNDFKGCLPASIGNMSKTLNEVIMMDNGLRSCFPSSIGLLKELTVLDVSYNELVGPLPDSLGGMKSLEQLNVGHNMLSGAIPESICDLPRLQNFSYEYNFFTGEPPVCLRVPEFSDRRNCLKGRPGQRSGGQCKGFLRKKVDCSAFKC 397
            F F+ L L F+ FL     SSC +     S NG LS++E  YIK RQLLYY+DEFGDRGENV VDP+LVFENPRLR AYIALQAWKQAI+SDPLNLTGNWVGS+VC Y  VFCAPAP+N+S +TVAGIDLNHGDIAGYLPEELGLLTDLALFHINSNRFCGTVP KFK LK+LYELD+SNNRFAGKFP+VVL LP+LKFLDLRFNEFEG VP+ LFDK LDAIFINHNRF F +P+NFGNSPVSV+VLA N F GC+PAS+GNM  TLNE+I+M+NG RSC P  IGLLK+LTVLD+S+N+L+GPLPD++ GM SLEQLNV HNMLSG+IP SIC LPRLQNF++ YNFFTGEPPVCL +P   DRRNCL  RP QRS  QCK FL K VDCS+F+C
Sbjct:    9 FYFSLLSLDFILFLLFVSFSSCHSKHVHISRNGGLSDAEAMYIKQRQLLYYRDEFGDRGENVTVDPSLVFENPRLRDAYIALQAWKQAILSDPLNLTGNWVGSDVCGYKYVFCAPAPDNQSIRTVAGIDLNHGDIAGYLPEELGLLTDLALFHINSNRFCGTVPHKFKHLKLLYELDLSNNRFAGKFPHVVLKLPSLKFLDLRFNEFEGSVPRELFDKPLDAIFINHNRFVFDLPDNFGNSPVSVIVLANNKFHGCIPASLGNMKDTLNEIILMNNGFRSCLPPEIGLLKDLTVLDMSFNQLMGPLPDTIAGMVSLEQLNVAHNMLSGSIPASICKLPRLQNFTFSYNFFTGEPPVCLSLPSSDDRRNCLPARPAQRSAAQCKAFLSKPVDCSSFRC 405
[Close]
BLAST of XM_017367255.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZA47 ((Putative leucine-rich repeat extensin-like protein 4 {ECO:0000313|EMBL:MPA40990.1}) (2.7.11.1 {ECO:0000313|EMBL:MPA40990.1}))

HSP 1 Score: 640.573 bits (1651), Expect = 0.000e+0
Identity = 297/397 (74.81%), Postives = 335/397 (84.38%), Query Frame = 0
 
Query:   10 FIFAALLLVFLTFL-----SSCEA----YSFNGRLSESEVHYIKHRQLLYYKDEFGDRGENVAVDPALVFENPRLRSAYIALQAWKQAIISDPLNLTGNWVGSEVCNYTGVFCAPAPENKSDQTVAGIDLNHGDIAGYLPEELGLLTDLALFHINSNRFCGTVPKKFKKLKILYELDISNNRFAGKFPYVVLDLPNLKFLDLRFNEFEGKVPKALFDKNLDAIFINHNRFKFSIPENFGNSPVSVVVLAGNDFKGCLPASIGNMSKTLNEVIMMDNGLRSCFPSSIGLLKELTVLDVSYNELVGPLPDSLGGMKSLEQLNVGHNMLSGAIPESICDLPRLQNFSYEYNFFTGEPPVCLRVPEFSDRRNCLKGRPGQRSGGQCKGFLRKKVDCSAFKC 397
            F F+ L L F+ FL     SSC +     S NG LS++E  YIK RQLLYY+DEFGDRGENV VDP+LVFENPRLR AYIALQAWKQAI+SDPLNLTGNWVGS+VC Y  VFCAPAP+N+S +TVAGIDLNHGDIAGYLPEELGLLTDLALFHINSNRFCGTVP KFK LK+LYELD+SNNRFAGKFP+VVL LP+LKFLDLRFNEFEG VP+ LFDK LDAIFINHNRF F +P+NFGNSPVSV+VLA N F GC+PAS+GNM  TLNE+I+M+NG RSC P  IGLLK+LTVLD+S+N+L+GPLPD++ GM SLEQLNV HNMLSG+IP SIC LPRLQNF++ YNFFTGEPPVCL +P   DRRNCL  RP QRS  QCK FL K VDCS+F+C
Sbjct:    9 FYFSLLSLDFILFLLFVSFSSCHSKHVHISRNGGLSDAEAMYIKQRQLLYYRDEFGDRGENVTVDPSLVFENPRLRDAYIALQAWKQAILSDPLNLTGNWVGSDVCGYKYVFCAPAPDNQSIRTVAGIDLNHGDIAGYLPEELGLLTDLALFHINSNRFCGTVPHKFKHLKLLYELDLSNNRFAGKFPHVVLKLPSLKFLDLRFNEFEGSVPRELFDKPLDAIFINHNRFVFDLPDNFGNSPVSVIVLANNKFHGCIPASLGNMKDTLNEIILMNNGFRSCLPPEIGLLKDLTVLDMSFNQLMGPLPDTIAGMVSLEQLNVAHNMLSGSIPASICKLPRLQNFTFSYNFFTGEPPVCLSLPSSDDRRNCLPARPAQRSAAQCKAFLSKPVDCSSFRC 405
[Close]
BLAST of XM_017367255.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6Z9L1 ((Putative leucine-rich repeat extensin-like protein 4 {ECO:0000313|EMBL:MPA40987.1}) (2.7.11.1 {ECO:0000313|EMBL:MPA40987.1}))

HSP 1 Score: 639.417 bits (1648), Expect = 0.000e+0
Identity = 296/397 (74.56%), Postives = 335/397 (84.38%), Query Frame = 0
 
Query:   10 FIFAALLLVFLTFL-----SSCEA----YSFNGRLSESEVHYIKHRQLLYYKDEFGDRGENVAVDPALVFENPRLRSAYIALQAWKQAIISDPLNLTGNWVGSEVCNYTGVFCAPAPENKSDQTVAGIDLNHGDIAGYLPEELGLLTDLALFHINSNRFCGTVPKKFKKLKILYELDISNNRFAGKFPYVVLDLPNLKFLDLRFNEFEGKVPKALFDKNLDAIFINHNRFKFSIPENFGNSPVSVVVLAGNDFKGCLPASIGNMSKTLNEVIMMDNGLRSCFPSSIGLLKELTVLDVSYNELVGPLPDSLGGMKSLEQLNVGHNMLSGAIPESICDLPRLQNFSYEYNFFTGEPPVCLRVPEFSDRRNCLKGRPGQRSGGQCKGFLRKKVDCSAFKC 397
            F F+ L L F+ FL     SSC +     S NG LS++E  YIK RQLLYY+DEFGDRGENV VDP+LVFENPRLR AYIALQAWKQAI+SDPLNLTGNWVGS+VC Y  VFCAPAP+N+S +TVAGIDLNHGDIAGY+PEELGLLTDLALFHINSNRFCGTVP KFK LK+LYELD+SNNRFAGKFP+VVL LP+LKFLDLRFNEFEG VP+ LFDK LDAIFINHNRF F +P+NFGNSPVSV+VLA N F GC+PAS+GNM  TLNE+I+M+NG RSC P  IGLLK+LTVLD+S+N+L+GPLPD++ GM SLEQLNV HNMLSG+IP SIC LPRLQNF++ YNFFTGEPPVCL +P   DRRNCL  RP QRS  QCK FL K VDCS+F+C
Sbjct:    9 FYFSLLSLDFILFLLFVSFSSCHSKHVHISRNGGLSDAEAMYIKQRQLLYYRDEFGDRGENVTVDPSLVFENPRLRDAYIALQAWKQAILSDPLNLTGNWVGSDVCGYKYVFCAPAPDNQSIRTVAGIDLNHGDIAGYMPEELGLLTDLALFHINSNRFCGTVPHKFKHLKLLYELDLSNNRFAGKFPHVVLKLPSLKFLDLRFNEFEGSVPRELFDKPLDAIFINHNRFVFDLPDNFGNSPVSVIVLANNKFHGCIPASLGNMKDTLNEIILMNNGFRSCLPPEIGLLKDLTVLDMSFNQLMGPLPDTIAGMVSLEQLNVAHNMLSGSIPASICKLPRLQNFTFSYNFFTGEPPVCLSLPSSDDRRNCLPARPAQRSAAQCKAFLSKPVDCSSFRC 405
[Close]
BLAST of XM_017367255.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A061GLU8 ((Leucine-rich repeat family protein {ECO:0000313|EMBL:EOY30845.1}))

HSP 1 Score: 637.106 bits (1642), Expect = 0.000e+0
Identity = 292/384 (76.04%), Postives = 327/384 (85.16%), Query Frame = 0
 
Query:   19 FLTFLSSCEAYSF--NGRLSESEVHYIKHRQLLYYKDEFGDRGENVAVDPALVFENPRLRSAYIALQAWKQAIISDPLNLTGNWVGSEVCNYTGVFCAPAPENKSDQTVAGIDLNHGDIAGYLPEELGLLTDLALFHINSNRFCGTVPKKFKKLKILYELDISNNRFAGKFPYVVLDLPNLKFLDLRFNEFEGKVPKALFDKNLDAIFINHNRFKFSIPENFGNSPVSVVVLAGNDFKGCLPASIGNMSKTLNEVIMMDNGLRSCFPSSIGLLKELTVLDVSYNELVGPLPDSLGGMKSLEQLNVGHNMLSGAIPESICDLPRLQNFSYEYNFFTGEPPVCLRVPEFSDRRNCLKGRPGQRSGGQCKGFLRKKVDCSAFKCEPF 400
            F+ F  SCE +S   +G L++ EV YIK RQLLYY+DEFGDRGE V VDP+LVFENPRLR+AYIALQAWKQAI+SDP NLTGNWVGSEVCNYTGVFCA AP+NK  +TVAGIDLNHGDIAGYLPEELGLLTDLALFHINSNRFCGTVP KF  LKIL+ELD+SNNRFAGKFP VVL LP LKFLDLRFNEFEG VPK LFDK+LDAIFINHNRF+F+IP+NFGNSPVSV+VLA N F GC+P+S+GNMS  L E+I+M+NG RSC P  IG+LK LTV DVS+NEL+GPLPD +G M SLEQLNV HNMLSG IP SIC LP+LQNF++ YNFFTGEPPVCL + +F DRRNCL  RP QRS  QCK FL K VDCS+F+C PF
Sbjct:   22 FIGF-CSCEQHSISSHGGLTDQEVLYIKQRQLLYYRDEFGDRGERVTVDPSLVFENPRLRNAYIALQAWKQAILSDPFNLTGNWVGSEVCNYTGVFCAAAPDNKKIKTVAGIDLNHGDIAGYLPEELGLLTDLALFHINSNRFCGTVPHKFINLKILFELDLSNNRFAGKFPDVVLKLPKLKFLDLRFNEFEGTVPKELFDKDLDAIFINHNRFRFNIPDNFGNSPVSVIVLANNKFHGCVPSSLGNMS-GLEEIILMNNGFRSCLPEEIGMLKNLTVFDVSFNELMGPLPDKIGEMVSLEQLNVAHNMLSGEIPASICKLPKLQNFTFSYNFFTGEPPVCLSLQDFDDRRNCLPARPLQRSAAQCKSFLSKPVDCSSFRCAPF 403
[Close]
BLAST of XM_017367255.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7P0P2 (LRRNT_2 domain-containing protein {ECO:0000259|Pfam:PF08263})

HSP 1 Score: 635.95 bits (1639), Expect = 0.000e+0
Identity = 311/450 (69.11%), Postives = 357/450 (79.33%), Query Frame = 0
 
Query:    5 INQNPFIFAALLLVFLTFLSSCEAYSFN-GRLSESEVHYIKHRQLLYYKDEFGDRGENVAVDPALVFENPRLRSAYIALQAWKQAIISDPLNLTGNWVGSEVCNYTGVFCAPAPENKSDQTVAGIDLNHGDIAGYLPEELGLLTDLALFHINSNRFCGTVPKKFKKLKILYELDISNNRFAGKFPYVVLDLPNLKFLDLRFNEFEGKVPKALFDKNLDAIFINHNRFKFSIPENFGNSPVSVVVLAGNDFKGCLPASIGNMSKTLNEVIMMDNGLRSCFPSSIGLLKELTVLDVSYNELVGPLPDSLGGMKSLEQLNVGHNMLSGAIPESICDLPRLQNFSYEYNFFTGEPPVCLRVPEFSDRRNCLKGRPGQRSGGQCKGFLRKKVDCSAFKCEPFVPSLPAPPPPSPPVPVPSPPVYVPPPVPVPVPSPPVYVPPSPPPVYSPPPQVY 453
            +N N   F  L L+FL  +SS   ++ N G L++++V YI+HRQLLYY+DE+GDRGENV +DP+LVFENPR+R+AY+ALQAWKQAI+SDPLNLT NWVGS+VCNYTGVFC+PA +++   TVAGIDLNHGDIAGYLPEELGLLTDLALFHINSNRFCGTVP+KF KLKILYELD+SNNRFAG FP VVL L +LKFLDLRFNEFEGKVP ALFDK+LDAIFINHNRFKFS+P+NFGNSPVSV+VLA N F GC+PAS+GNMS TLNE+IMM+NGLRSC P+ IGLLK LTV DVS+N+L+GPLP S+GGM SLEQLNV HN+LSG IPESIC LP LQNF+Y YNFFTGEPPVCL VP++ D+RNCL GRP QRS  QCK +L K VDC +F C PFVPS                            PSP    P   PP  SPPP VY
Sbjct:    1 MNFNQHCFINLTLIFL--ISSSFLFNLNNGDLTDAQVTYIRHRQLLYYRDEYGDRGENVTIDPSLVFENPRIRNAYVALQAWKQAILSDPLNLTLNWVGSDVCNYTGVFCSPALDDRWVTTVAGIDLNHGDIAGYLPEELGLLTDLALFHINSNRFCGTVPRKFVKLKILYELDLSNNRFAGPFPAVVLKLRSLKFLDLRFNEFEGKVPNALFDKDLDAIFINHNRFKFSLPDNFGNSPVSVIVLANNKFHGCVPASLGNMSDTLNEIIMMNNGLRSCLPAEIGLLKNLTVFDVSFNQLMGPLPSSIGGMVSLEQLNVAHNLLSGKIPESICGLPNLQNFTYSYNFFTGEPPVCLEVPDYDDKRNCLAGRPAQRSAKQCKSYLSKPVDCGSFSCAPFVPS----------------------------PSPT---PVYSPPPASPPPPVY 417
[Close]
BLAST of XM_017367255.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N0T7G7 (LRRNT_2 domain-containing protein {ECO:0000259|Pfam:PF08263})

HSP 1 Score: 633.639 bits (1633), Expect = 0.000e+0
Identity = 294/405 (72.59%), Postives = 335/405 (82.72%), Query Frame = 0
 
Query:    4 KINQNPF-IFAALLLVFLTFLSSCEAYSF------NGRLSESEVHYIKHRQLLYYKDEFGDRGENVAVDPALVFENPRLRSAYIALQAWKQAIISDPLNLTGNWVGSEVCNYTGVFCAPAPENKSDQTVAGIDLNHGDIAGYLPEELGLLTDLALFHINSNRFCGTVPKKFKKLKILYELDISNNRFAGKFPYVVLDLPNLKFLDLRFNEFEGKVPKALFDKNLDAIFINHNRFKFSIPENFGNSPVSVVVLAGNDFKGCLPASIGNMSKTLNEVIMMDNGLRSCFPSSIGLLKELTVLDVSYNELVGPLPDSLGGMKSLEQLNVGHNMLSGAIPESICDLPRLQNFSYEYNFFTGEPPVCLRVPEFSDRRNCLKGRPGQRSGGQCKGFLRKKVDCSAFKCEPFV 401
            +I  +PF +F   +L+ L FLS   +  F       G L+++E  YIK RQLLYY+DEFGDRGENV VDP LVF N RLR+AYIALQAWK+AI+SDP NLT NWVGS+VCNYTGVFCAPA ++   +TVAGIDLNHGDIAGYLPEELGLL DLALFHINSNRFCGTVP+KFK L +L+ELD+SNNRFAGKFP VVL LP+LKFLDLRFNEFEGKVP+ LFDK LDAIFINHNRF F +P+NFGNSPVSV+VLA N F GCLPASIGNMS TLNE+IMMDN LRSC P  IGLLK LTVLDVSYNEL+GPLP+S+GGM +LEQLNV HNML+G+IPES+C LP LQNF++ YNFFTGEPPVCL + +F DRRNCL  RP QRS  QCK F  + V CSAF+C+PFV
Sbjct:    3 RIINHPFHLFFPCILLILGFLSLARSADFASVPAHGGVLTDAEALYIKQRQLLYYRDEFGDRGENVTVDPDLVFRNARLRNAYIALQAWKEAILSDPYNLTENWVGSDVCNYTGVFCAPALDDPKIETVAGIDLNHGDIAGYLPEELGLLVDLALFHINSNRFCGTVPRKFKNLVLLFELDLSNNRFAGKFPAVVLQLPSLKFLDLRFNEFEGKVPRELFDKPLDAIFINHNRFVFELPDNFGNSPVSVIVLAHNKFHGCLPASIGNMSDTLNELIMMDNELRSCVPEEIGLLKNLTVLDVSYNELMGPLPESIGGMLNLEQLNVAHNMLTGSIPESVCSLPDLQNFTFSYNFFTGEPPVCLSLEDFDDRRNCLANRPLQRSAAQCKTFASRPVHCSAFRCKPFV 407
[Close]
BLAST of XM_017367255.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J0ZLK9 ((leucine-rich repeat extensin-like protein 4 {ECO:0000313|RefSeq:XP_021275697.1}))

HSP 1 Score: 629.787 bits (1623), Expect = 0.000e+0
Identity = 290/384 (75.52%), Postives = 328/384 (85.42%), Query Frame = 0
 
Query:   19 FLTFLSSCEAYSF--NGRLSESEVHYIKHRQLLYYKDEFGDRGENVAVDPALVFENPRLRSAYIALQAWKQAIISDPLNLTGNWVGSEVCNYTGVFCAPAPENKSDQTVAGIDLNHGDIAGYLPEELGLLTDLALFHINSNRFCGTVPKKFKKLKILYELDISNNRFAGKFPYVVLDLPNLKFLDLRFNEFEGKVPKALFDKNLDAIFINHNRFKFSIPENFGNSPVSVVVLAGNDFKGCLPASIGNMSKTLNEVIMMDNGLRSCFPSSIGLLKELTVLDVSYNELVGPLPDSLGGMKSLEQLNVGHNMLSGAIPESICDLPRLQNFSYEYNFFTGEPPVCLRVPEFSDRRNCLKGRPGQRSGGQCKGFLRKKVDCSAFKCEPF 400
            F+ F  SCE +S   +G L++ EV YIK RQLLYY+DEFGDRGE V VDP+LVFENPRLR+AYIALQAWKQAI+SDP NLTGNWVGSEVC+YTGV+CAPAP+NK  +TVAGIDLNHGDIAGYLPEELGLLTDLALFHINSNRFCGTVP KF  LKIL+ELD+SNNRFAGKFP VVL LP LKFLDLRFNEFEG VPK LFDK+LDAIFINHNRF+F+IP+NFGNSPVSV+VLA N F GC+P+S+GNMS  L E+I+M+NG RSC P  IGLLK LTV DVS+N+L+GPLPD +G M SLEQLNV HNMLSG IP SIC LP+LQNF++ YNFFTGEPPVCL + +F DRRNCL  RP QRS  QCK FL + VDCS+F+C PF
Sbjct:   22 FIGF-CSCEQHSISSHGGLTDQEVLYIKQRQLLYYRDEFGDRGERVTVDPSLVFENPRLRNAYIALQAWKQAILSDPFNLTGNWVGSEVCSYTGVYCAPAPDNKKIKTVAGIDLNHGDIAGYLPEELGLLTDLALFHINSNRFCGTVPHKFINLKILFELDLSNNRFAGKFPDVVLKLPKLKFLDLRFNEFEGTVPKELFDKDLDAIFINHNRFRFNIPDNFGNSPVSVIVLANNKFHGCVPSSLGNMS-GLEEIILMNNGFRSCLPEEIGLLKNLTVFDVSFNKLMGPLPDKIGEMISLEQLNVAHNMLSGKIPASICKLPKLQNFTFSYNFFTGEPPVCLSLQDFDDRRNCLPARPLQRSAAQCKSFLSRPVDCSSFRCAPF 403
[Close]
BLAST of XM_017367255.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A835IGR7 ((Uncharacterized protein {ECO:0000313|EMBL:KAF9616844.1}))

HSP 1 Score: 629.402 bits (1622), Expect = 0.000e+0
Identity = 276/363 (76.03%), Postives = 319/363 (87.88%), Query Frame = 0
 
Query:   35 LSESEVHYIKHRQLLYYKDEFGDRGENVAVDPALVFENPRLRSAYIALQAWKQAIISDPLNLTGNWVGSEVCNYTGVFCAPAPENKSDQTVAGIDLNHGDIAGYLPEELGLLTDLALFHINSNRFCGTVPKKFKKLKILYELDISNNRFAGKFPYVVLDLPNLKFLDLRFNEFEGKVPKALFDKNLDAIFINHNRFKFSIPENFGNSPVSVVVLAGNDFKGCLPASIGNMSKTLNEVIMMDNGLRSCFPSSIGLLKELTVLDVSYNELVGPLPDSLGGMKSLEQLNVGHNMLSGAIPESICDLPRLQNFSYEYNFFTGEPPVCLRVPEFSDRRNCLKGRPGQRSGGQCKGFLRKKVDCSAFKC 397
            L++++V YI+HRQLLYY+DEFGDRGENV+ DP+LVFENPR+++AYIALQAWKQAIISDPLN TGNWVGS+VC+YTGVFC  A ++ + QTVAGIDLNHGDIAGYLPEELGLL DLALFHINSNRFCGTVP KF+KLK+L+ELD+SNNRFAG+FP VVL LP+LKFLDLRFNEFEG VP  LFDK+LDAIFIN+N+F F +P NFGNSPVSV+VLA N F GCLPAS+GNM+ TLNE+I+M+NGLRSCFP  IGLL  LTVLDVS+N+L+GPLPD++G M SLEQLNV +NMLSG IP SIC LP LQNF+Y YNFFTGEPPVCLR+ EF DR+NCL GRP QRS  QCKGF    VDC++FKC
Sbjct:  215 LTDAQVKYIRHRQLLYYRDEFGDRGENVSTDPSLVFENPRIKNAYIALQAWKQAIISDPLNQTGNWVGSDVCSYTGVFCTNATDDSTIQTVAGIDLNHGDIAGYLPEELGLLVDLALFHINSNRFCGTVPHKFEKLKLLFELDLSNNRFAGRFPGVVLQLPSLKFLDLRFNEFEGSVPSELFDKDLDAIFINNNQFAFDLPSNFGNSPVSVIVLANNKFHGCLPASLGNMAGTLNEIILMNNGLRSCFPEEIGLLTNLTVLDVSFNQLMGPLPDTIGEMVSLEQLNVANNMLSGTIPSSICLLPNLQNFTYSYNFFTGEPPVCLRLSEFDDRKNCLPGRPAQRSAKQCKGFSSHPVDCNSFKC 577
Match NameStatsDescription
A0A5B6ZB20E-Value: 0.000e+0, PID: 74.81(Putative leucine-rich repeat extensin-like protei... [more]
A0A2G5DGE8E-Value: 0.000e+0, PID: 72.73LRRNT_2 domain-containing protein {ECO:0000259|Pfa... [more]
A0A5B6Z9P5E-Value: 0.000e+0, PID: 74.81(Putative leucine-rich repeat extensin-like protei... [more]
A0A5B6ZA47E-Value: 0.000e+0, PID: 74.81(Putative leucine-rich repeat extensin-like protei... [more]
A0A5B6Z9L1E-Value: 0.000e+0, PID: 74.56(Putative leucine-rich repeat extensin-like protei... [more]
A0A061GLU8E-Value: 0.000e+0, PID: 76.04(Leucine-rich repeat family protein {ECO:0000313|E... [more]
A0A7J7P0P2E-Value: 0.000e+0, PID: 69.11LRRNT_2 domain-containing protein {ECO:0000259|Pfa... [more]
A0A7N0T7G7E-Value: 0.000e+0, PID: 72.59LRRNT_2 domain-containing protein {ECO:0000259|Pfa... [more]
A0A6J0ZLK9E-Value: 0.000e+0, PID: 75.52(leucine-rich repeat extensin-like protein 4 {ECO:... [more]
A0A835IGR7E-Value: 0.000e+0, PID: 76.03(Uncharacterized protein {ECO:0000313|EMBL:KAF9616... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.