XM_017366520.1

Resource Type: 
Polypeptide
Name: 
XM_017366520.1
Identifier: 
XM_017366520.1-protein
Sequence: 
MDYNYLTELDGKRLHDPRLTRPKTMTTTSRIRVEGPVIVGAGPSGLAVAA
CLRQRGIPSLILERANCLASLWQLKTYDRLRLHLPKHLCQLPHMPFPQDF
PTYPTKQQFVAYLMAYAKAFHIEPEYNTTVVSAEFDNNCDFWRMKTVKGE
LELESGEIEYVCKWLVVASGENAEEVKPEFEGMDEFRGPIIHTSHYKSGD
PFRDKRVLVVGCGNSGMEICLDLCNYNARPSLVVRDTLHVLPQEMLGRST
FGVSMWLLKWLPIRFVDCFLLLVSRLTIGDTDQLGLYRPKLGPLELKKKT
GKTPVLDVGTLAKIRNGSIKVFPGVKRFTCHAIEFVDGRTENFDAIILAT
GYKNNIPSWLKDNVLFSKKDGHSKKPFRPEGWKGENGLYSVGFAKRGLLG
TSMDAERVAEDIELQWYLKDSKIITESVDQVPEIERVLCNL
Sequence Length: 
441
Sequence Checksum: 
82cf994c8c8d593c015e950d8a68ea25
View location in JBrowse: 
DCARv2_Chr8:2441828..2444478+
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017366520.1, derives from mRNA, XM_017366520.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017366520.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017366520.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2C9UB14 (Flavin-containing monooxygenase {ECO:0000256|RuleBase:RU361177} (1.-.-.- {ECO:0000256|RuleBase:RU361177}))

HSP 1 Score: 607.831 bits (1566), Expect = 0.000e+0
Identity = 289/413 (69.98%), Postives = 340/413 (82.32%), Query Frame = 0
 
Query:    4 NYLTELDGKRLHDPRLTRPKTMTTTSRIRVEGPVIVGAGPSGLAVAACLRQRGIPSLILERANCLASLWQLKTYDRLRLHLPKHLCQLPHMPFPQDFPTYPTKQQFVAYLMAYAKAFHIEPEYNTTVVSAEFDNNCDFWRMKTVKGELELESGEIEYVCKWLVVASGENAEEVKPEFEGMDEFRGPIIHTSHYKSGDPFRDKRVLVVGCGNSGMEICLDLCNYNARPSLVVRDTLHVLPQEMLGRSTFGVSMWLLKWLPIRFVDCFLLLVSRLTIGDTDQLGLYRPKLGPLELKKKTGKTPVLDVGTLAKIRNGSIKVFPGVKRFTCHAIEFVDGRTENFDAIILATGYKNNIPSWLKDNVLFSKKDGHSKKPFRPEGWKGENGLYSVGFAKRGLLGTSMDAERVAEDIELQW 416
            +YL E++GKR+HD   T    ++ +  I V GPVIVGAGPSGLA AACL++RG+PSLILER+NC+ASLWQLKTYDRLRLHLPK  C+LP MPFP +FPTYPTKQQF+AYL AYAK F + P +N TVVSAEFD  C FWR+KT    L L+  E EYVC+WL+VA+GENAEEV P+ EGM++F GPI+HTS YK+G+ FR K VLVVGCGNSGME+CLDLCNYNARPS+VVRD++HVLPQEMLGRSTFG+SMWLLKW P+R VD  LLLVSR T+GDT Q GL RPKLGP++LK  TGKTPVLDVGTLAKIR+G IKV  G+ R   H +EFVDG   NFDAIILATGYK+N+PSWLK N +FS+K+G   KPF P GWKGENGLY+VGF KRGLLG S+DA R+A+D+EL+W
Sbjct:   10 DYLKEVEGKRVHD-HFTNNMAISRSRCIWVPGPVIVGAGPSGLATAACLKERGVPSLILERSNCIASLWQLKTYDRLRLHLPKQFCELPLMPFPSNFPTYPTKQQFLAYLEAYAKHFGLAPVFNNTVVSAEFDPRCGFWRIKT----LGLKQEETEYVCQWLIVATGENAEEVVPDIEGMNQFEGPILHTSSYKTGELFRGKSVLVVGCGNSGMEVCLDLCNYNARPSMVVRDSVHVLPQEMLGRSTFGLSMWLLKWFPMRLVDQILLLVSRFTLGDTSQFGLNRPKLGPIQLKNVTGKTPVLDVGTLAKIRSGDIKVCRGIHRLMHHCVEFVDGSIGNFDAIILATGYKSNVPSWLKGNEMFSEKEGLPHKPF-PNGWKGENGLYAVGFTKRGLLGASIDARRIAQDMELRW 416
[Close]
BLAST of XM_017366520.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QV24 (Flavin-containing monooxygenase {ECO:0000256|RuleBase:RU361177} (1.-.-.- {ECO:0000256|RuleBase:RU361177}))

HSP 1 Score: 604.749 bits (1558), Expect = 0.000e+0
Identity = 292/417 (70.02%), Postives = 340/417 (81.53%), Query Frame = 0
 
Query:    1 MDY-NYLTELDGKRLHDPRLTRPKTMTTTSRIRVEGPVIVGAGPSGLAVAACLRQRGIPSLILERANCLASLWQLKTYDRLRLHLPKHLCQLPHMPFPQDFPTYPTKQQFVAYLMAYAKAFHIEPEYNTTVVSAEFDNNCDFWRMKTVKGELELESGEIEYVCKWLVVASGENAEEVKPEFEGMDEFRGPIIHTSHYKSGDPFRDKRVLVVGCGNSGMEICLDLCNYNARPSLVVRDTLHVLPQEMLGRSTFGVSMWLLKWLPIRFVDCFLLLVSRLTIGDTDQLGLYRPKLGPLELKKKTGKTPVLDVGTLAKIRNGSIKVFPGVKRFTCHAIEFVDGRTENFDAIILATGYKNNIPSWLKDNVLFSKKDGHSKKPFRPEGWKGENGLYSVGFAKRGLLGTSMDAERVAEDIELQW 416
            MDY  YL E +GKR HD      K   +  R+ V GPVIVGAGPSGLA AACL+ RG+ SLILERANC+ASLWQLKTYDRLRLHLPK  C+LP +PFP +FPTYPTKQQFVAY+  YA  F++ P +NTTVVSAEFD  C FWR+KT+   +E    E EYVC+W+VVA+GENAEEV P  EGM EF GPI+HTS YK+G+ F  KRVLVVGCGNSGME+CLDLCNY+A+PSLVVRD++HVLPQEMLGRSTFG+S WLLKW PI  VD FLLL+SRL +GDT QLGL RP LGPL+LKK++GKTPVLD+GTL KIR+G IK+FPG+KR   HA+EF D R ENFDAIILATGYK+N+P+WLK+   FS+KDG  +KPF P GWKGENGLY+VGF KRGLLGTSMD++R+AEDIE QW
Sbjct:    1 MDYLVYLKETEGKRFHDH--FEDKMKNSVKRVWVPGPVIVGAGPSGLAAAACLKARGVSSLILERANCIASLWQLKTYDRLRLHLPKQFCELPLLPFPSEFPTYPTKQQFVAYMEGYAHHFNLSPVFNTTVVSAEFDKGCGFWRVKTIGIGVE----EREYVCRWVVVATGENAEEVMPGIEGMGEFSGPIVHTSKYKTGERFCGKRVLVVGCGNSGMEVCLDLCNYDAQPSLVVRDSVHVLPQEMLGRSTFGLSTWLLKWFPIWLVDRFLLLMSRLMLGDTAQLGLTRPNLGPLQLKKESGKTPVLDIGTLEKIRSGHIKIFPGIKRLKRHAVEFSDERVENFDAIILATGYKSNVPTWLKETNFFSEKDGFPRKPF-PHGWKGENGLYAVGFTKRGLLGTSMDSKRIAEDIEHQW 410
[Close]
BLAST of XM_017366520.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: B9RKR3 (Flavin-containing monooxygenase {ECO:0000256|RuleBase:RU361177} (1.-.-.- {ECO:0000256|RuleBase:RU361177}))

HSP 1 Score: 603.208 bits (1554), Expect = 0.000e+0
Identity = 284/412 (68.93%), Postives = 339/412 (82.28%), Query Frame = 0
 
Query:    5 YLTELDGKRLHDPRLTRPKTMTTTSRIRVEGPVIVGAGPSGLAVAACLRQRGIPSLILERANCLASLWQLKTYDRLRLHLPKHLCQLPHMPFPQDFPTYPTKQQFVAYLMAYAKAFHIEPEYNTTVVSAEFDNNCDFWRMKTVKGELELESGEIEYVCKWLVVASGENAEEVKPEFEGMDEFRGPIIHTSHYKSGDPFRDKRVLVVGCGNSGMEICLDLCNYNARPSLVVRDTLHVLPQEMLGRSTFGVSMWLLKWLPIRFVDCFLLLVSRLTIGDTDQLGLYRPKLGPLELKKKTGKTPVLDVGTLAKIRNGSIKVFPGVKRFTCHAIEFVDGRTENFDAIILATGYKNNIPSWLKDNVLFSKKDGHSKKPFRPEGWKGENGLYSVGFAKRGLLGTSMDAERVAEDIELQW 416
            Y+ E++GKR+HDP   +   ++ +  I V G VIVGAGPSGLA +ACL++RG+PSLILERANC+ASLWQLKTYDRLRLHLPK  C+LP MPFP  FPTYPTKQQF+AYL AY + F IEP +N+TVV+A+FD+ C FWR+KT    L ++  E EYVC+WL+VA+GENAEEV P+ EGMD F GPIIHTS YKSG+ FR KR+LVVGCGNSGME+CLDLCNYNARPS+VVRD++HVLPQEMLG S+FG+SMWLLKW P+  VD  LL VS   +GDT QLGL+RPKLGPLELK  TGKTPVLDVGT++KIR+G IKV PG+KR   H +EF DGR E+FDAIILATGY++N+PSWLKDN +FSKKDG   K F   GWKGENGLY+VGF KRGLLG S+DA R+A+DIE++W
Sbjct:    3 YMKEVEGKRIHDP-FNKNMAISPSRCIWVPGAVIVGAGPSGLAASACLQERGVPSLILERANCIASLWQLKTYDRLRLHLPKKFCELPLMPFPSSFPTYPTKQQFLAYLEAYKEHFGIEPVFNSTVVNADFDHRCGFWRVKT----LGMKQEESEYVCQWLIVATGENAEEVVPDIEGMDSFEGPIIHTSSYKSGNLFRGKRILVVGCGNSGMEVCLDLCNYNARPSIVVRDSVHVLPQEMLGTSSFGLSMWLLKWFPVSIVDQILLFVSFFVLGDTSQLGLHRPKLGPLELKNVTGKTPVLDVGTISKIRSGDIKVCPGIKRLMHHYVEFTDGRIEDFDAIILATGYRSNVPSWLKDNHMFSKKDGMPAKSFS-NGWKGENGLYAVGFTKRGLLGASIDARRIAQDIEMRW 408
[Close]
BLAST of XM_017366520.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A6LTV7 (Flavin-containing monooxygenase {ECO:0000256|RuleBase:RU361177} (1.-.-.- {ECO:0000256|RuleBase:RU361177}))

HSP 1 Score: 602.823 bits (1553), Expect = 0.000e+0
Identity = 293/431 (67.98%), Postives = 341/431 (79.12%), Query Frame = 0
 
Query:    1 MDYNYLTELDGKRLHDPRLTRPKTMTTTSRIRVEGPVIVGAGPSGLAVAACLRQRGIPSLILERANCLASLWQLKTYDRLRLHLPKHLCQLPHMPFPQDFPTYPTKQQFVAYLMAYAKAFHIEPEYNTTVVSAEFDNNCDFWRMKTVKGELELESGEIEYVCKWLVVASGENAEEVKPEFEGMDEFRGPIIHTSHYKSGDPFRDKRVLVVGCGNSGMEICLDLCNYNARPSLVVRDTLHVLPQEMLGRSTFGVSMWLLKWLPIRFVDCFLLLVSRLTIGDTDQLGLYRPKLGPLELKKKTGKTPVLDVGTLAKIRNGSIKVFPGVKRFTCHAIEFVDGRTENFDAIILATGYKNNIPSWLK---------------DNVLFSKKDGHSKKPFRPEGWKGENGLYSVGFAKRGLLGTSMDAERVAEDIELQW 416
            M  +YL E++GK +HD   T    M+ +    V GPVIVGAGPSGLA AACL++RG+PSLILERANC+ASLWQLKTYDRLRLHLPK  C+LP  PFP DFPTYPTKQQFVAYL AYAK F + P +N TVVSAEFD  C FWR+KT    L L+  E EYVC+WL+VA+GENAEEV P+ EGM++F GPI+HTS YKSG+ FR KRVLVVGCGNSGME+CLDLCNYNARPS+VVRD++HVLPQEMLGRSTFG+SMWLLKW P+  VD  LLL+SR  +GDT Q GL+RPKLGP++LK  TGKTPVLDVGTLAKIR+G IKV  G++R   H +EFVDG TENFDAIILATGYK+N+PSWLK                N +FS+KDG   K F P GWKGENGLY+VGF +RGLLGTS+DA R+A+DIEL+W
Sbjct:    8 MLMDYLKEVEGKIVHD-HFTNKMAMSPSRCTGVHGPVIVGAGPSGLATAACLKERGVPSLILERANCIASLWQLKTYDRLRLHLPKQFCELPLKPFPTDFPTYPTKQQFVAYLEAYAKHFGLAPVFNNTVVSAEFDPRCGFWRVKT----LGLKQEESEYVCQWLIVATGENAEEVVPDIEGMNQFEGPILHTSSYKSGELFRGKRVLVVGCGNSGMEVCLDLCNYNARPSIVVRDSVHVLPQEMLGRSTFGLSMWLLKWFPLGLVDQILLLISRFMLGDTSQFGLHRPKLGPIQLKNATGKTPVLDVGTLAKIRSGDIKVCRGIQRLMHHYVEFVDGSTENFDAIILATGYKSNVPSWLKVQENDFLTMNFCANQGNEMFSEKDGLPHKSF-PNGWKGENGLYAVGFTQRGLLGTSIDARRIAQDIELRW 432
[Close]
BLAST of XM_017366520.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4CZQ9 (Flavin-containing monooxygenase {ECO:0000256|RuleBase:RU361177} (1.-.-.- {ECO:0000256|RuleBase:RU361177}))

HSP 1 Score: 597.045 bits (1538), Expect = 0.000e+0
Identity = 289/423 (68.32%), Postives = 343/423 (81.09%), Query Frame = 0
 
Query:    4 NYLTELDGKRLHDPRLTRPKTMTTTSRIRVEGPVIVGAGPSGLAVAACLRQRGIPSLILERANCLASLWQLKTYDRLRLHLPKHLCQLPHMPFPQDFP---TYPTKQQFVAYLMAYAKAFHIEPEYNTTVVSAEFDNNCDFWRMKTVKGELELESGEIEYVCKWLVVASGENAEEVKPEFEGMDEFRGPIIHTSHYKSGDPFRDKRVLVVGCGNSGMEICLDLCNYNARPSLVVRDTLHVLPQEMLGRSTFGVSMWLLKWLPIRFVDCFLLLVSRLTIGDTDQLGLYRPKLGPLELKKKTGKTPVLDVGTLAKIRNGSIKVFPGVKRFTCHAIEFVDGRTENFDAIILATGYKNNIPSWLKDNVLFSKKDGHSKKPFRPEGWKGENGLYSVGFAKRGLLGTSMDAERVAEDIELQWYLKDSKI 423
            +YL E++GKRLHD      K   +  R+ V GPVIVGAGPSGLA AACL+Q+G+P+LILERANC+ASLWQ KTYDRLRLHLPK  C+LP M FP +FP   TYP+KQQF+AYL AYA++F++EP +N TVVSA FDN C FWR++    ++E    E EYVC+WLVVA+GENAEEV PE EGM EF G I+HTS YK+G+ F  K+VLVVGCGNSGME+CLDLCNYNA PSLVVRD++HVLPQEMLGRSTFG+SM LLKW P+R VD FLLL+SRL IGDT +LGL RPKLGPLELK  +GKTPVLD+GTL KI+ G+IKV  G+KR T H++E +DGR ENFDAIILATGYK+N+P WLK+N  FS+KDG  +KPF P GWKGENGLY+VGF KRGLLGTSMDA R+AED+E QW  K + +
Sbjct:    2 DYLKEMEGKRLHDH--FDDKMSNSVKRVWVPGPVIVGAGPSGLASAACLKQKGVPTLILERANCIASLWQQKTYDRLRLHLPKQFCELPLMHFPPNFPNFPTYPSKQQFIAYLEAYAQSFNLEPVFNKTVVSANFDNGCGFWRVRAQGLKME----ETEYVCQWLVVATGENAEEVVPEIEGMSEFVGQIVHTSSYKTGESFCGKKVLVVGCGNSGMEVCLDLCNYNAIPSLVVRDSVHVLPQEMLGRSTFGLSMCLLKWFPMRLVDRFLLLLSRLMIGDTARLGLTRPKLGPLELKSSSGKTPVLDIGTLQKIKTGNIKVCHGIKRLTHHSVELIDGREENFDAIILATGYKSNVPIWLKENNFFSEKDGFPRKPF-PHGWKGENGLYAVGFTKRGLLGTSMDARRIAEDVEQQWNAKPTDL 417
[Close]
BLAST of XM_017366520.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A1UP67 (Flavin-containing monooxygenase {ECO:0000256|RuleBase:RU361177} (1.-.-.- {ECO:0000256|RuleBase:RU361177}))

HSP 1 Score: 596.275 bits (1536), Expect = 0.000e+0
Identity = 298/416 (71.63%), Postives = 345/416 (82.93%), Query Frame = 0
 
Query:    4 NYLTELDGKRLHD---PRLTRPKTMTTTSRIRVEGPVIVGAGPSGLAVAACLRQRGIPSLILERANCLASLWQLKTYDRLRLHLPKHLCQLPHMPFPQDFPTYPTKQQFVAYLMAYAKAFHIEPEYNTTVVSAEFDNNCDFWRMKTVKGELELESGEIEYVCKWLVVASGENAEEVKPEFEGMDEFRGPIIHTSHYKSGDPFRDKRVLVVGCGNSGMEICLDLCNYNARPSLVVRDTLHVLPQEMLGRSTFGVSMWLLKWLPIRFVDCFLLLVSRLTIGDTDQLGLYRPKLGPLELKKKTGKTPVLDVGTLAKIRNGSIKVFPGVKRFTCHAIEFVDGRTENFDAIILATGYKNNIPSWLKDNVLFSKKDGHSKKPFRPEGWKGENGLYSVGFAKRGLLGTSMDAERVAEDIELQW 416
            +YL EL+GKRLHD    ++ +P+       I V GPVIVGAGPSGLAVAACL+QRG+PSLILERA+CLASLWQ KTYDRLRLHLPK  C+LP MPFP+ FPTYPTKQQFVAYL AYA  F I+PE NTTVVSAEFD  C FWR+KT      L++ E EYVC+WL+VA+GENA++V P+ EGM+EF GPI+HTS YKSGD F  K VLVVGCGNSGMEICLDLCNYNARPSLVVRD++HVLPQEMLGRSTFG+SMWLLKWLP+R VD FLLL+S L +GDT Q GL RPKLGPLELK K+GKTPVLDVGTLAKIR G+IKV   +KR T  A+EFVDG+ E+FDAIILATGY +N+PSWLK++ +FS+KDG  ++PF P+GWKGE GLY+VGF KRGLLGT +DA R+AEDIE  W
Sbjct:    2 DYLKELEGKRLHDHLGEKMAKPRC------IWVPGPVIVGAGPSGLAVAACLKQRGVPSLILERADCLASLWQHKTYDRLRLHLPKQFCELPLMPFPKHFPTYPTKQQFVAYLTAYADRFDIKPELNTTVVSAEFDQLCAFWRVKTTG----LKNEEAEYVCQWLIVATGENAKDVVPQIEGMNEFGGPIVHTSAYKSGDMFSGKSVLVVGCGNSGMEICLDLCNYNARPSLVVRDSVHVLPQEMLGRSTFGLSMWLLKWLPVRLVDRFLLLMSLLMLGDTAQFGLNRPKLGPLELKSKSGKTPVLDVGTLAKIRTGNIKVCKAIKRLTHRAVEFVDGKVEDFDAIILATGYISNVPSWLKESDMFSEKDGFPREPF-PDGWKGEFGLYAVGFTKRGLLGTHLDARRIAEDIEHLW 406
[Close]
BLAST of XM_017366520.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A200RCB3 (Flavin-containing monooxygenase {ECO:0000256|RuleBase:RU361177} (1.-.-.- {ECO:0000256|RuleBase:RU361177}))

HSP 1 Score: 593.193 bits (1528), Expect = 0.000e+0
Identity = 288/413 (69.73%), Postives = 336/413 (81.36%), Query Frame = 0
 
Query:    4 NYLTELDGKRLHDPRLTRPKTMTTTSRIRVEGPVIVGAGPSGLAVAACLRQRGIPSLILERANCLASLWQLKTYDRLRLHLPKHLCQLPHMPFPQDFPTYPTKQQFVAYLMAYAKAFHIEPEYNTTVVSAEFDNNCDFWRMKTVKGELELESGEIEYVCKWLVVASGENAEEVKPEFEGMDEFRGPIIHTSHYKSGDPFRDKRVLVVGCGNSGMEICLDLCNYNARPSLVVRDTLHVLPQEMLGRSTFGVSMWLLKWLPIRFVDCFLLLVSRLTIGDTDQLGLYRPKLGPLELKKKTGKTPVLDVGTLAKIRNGSIKVFPGVKRFTCHAIEFVDGRTENFDAIILATGYKNNIPSWLKDNVLFSKKDGHSKKPFRPEGWKGENGLYSVGFAKRGLLGTSMDAERVAEDIELQW 416
            +YL E++GKR+HDP     K      R+ V GPVIVGAGPSGLA AACLR+RG+PS+I+ERANC+ASLWQLK+Y RLRLHLPK  CQLP MPFP +FPTYP+KQQFV YL AYAK F + P++N TV SAE+D++   WR+KT   +      E EYV +WLVVA+GENAE V P  EGMDEF GPI+HTS YKSGD FR KRVLVVGCGNSGME+CLDLCNYNA PSLVVRDT+HVLP+EMLG STFG+SMWL+KWL +R+VD FLLL+S   +GDT +LGL RPK+GP+ELK  +GKTPVLDVGTLAKIR+GSIKV PG+KR + H   FVDGR E+FDAIILATGYK+N+PSWLKD  LFS+KDG  KK F P GWKGE GLYSVGF KRGLLGTSMDA+++A+DIEL W
Sbjct:    2 DYLREVEGKRVHDP--FGDKMFKNARRVCVPGPVIVGAGPSGLAAAACLRERGVPSVIIERANCIASLWQLKSYTRLRLHLPKEFCQLPLMPFPTEFPTYPSKQQFVDYLEAYAKRFDLNPQFNETVESAEYDHSLGLWRVKT---KALFNKEETEYVSRWLVVATGENAEAVVPGIEGMDEFVGPIVHTSSYKSGDVFRGKRVLVVGCGNSGMEVCLDLCNYNATPSLVVRDTVHVLPREMLGVSTFGLSMWLIKWLHVRYVDQFLLLLSWFMLGDTTKLGLDRPKIGPIELKMTSGKTPVLDVGTLAKIRSGSIKVCPGIKRLSRHTAHFVDGRAEDFDAIILATGYKSNVPSWLKDRDLFSEKDGLPKKAF-PNGWKGEYGLYSVGFTKRGLLGTSMDAKKIAQDIELLW 408
[Close]
BLAST of XM_017366520.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J8VGA9 (Flavin-containing monooxygenase {ECO:0000256|RuleBase:RU361177} (1.-.-.- {ECO:0000256|RuleBase:RU361177}))

HSP 1 Score: 593.193 bits (1528), Expect = 0.000e+0
Identity = 287/414 (69.32%), Postives = 342/414 (82.61%), Query Frame = 0
 
Query:    4 NYLTELDGKRLHDPRLTRPKTMTTTSR-IRVEGPVIVGAGPSGLAVAACLRQRGIPSLILERANCLASLWQLKTYDRLRLHLPKHLCQLPHMPFPQDFPTYPTKQQFVAYLMAYAKAFHIEPEYNTTVVSAEFDNNCDFWRMKTVKGELELESGEIEYVCKWLVVASGENAEEVKPEFEGMDEFRGPIIHTSHYKSGDPFRDKRVLVVGCGNSGMEICLDLCNYNARPSLVVRDTLHVLPQEMLGRSTFGVSMWLLKWLPIRFVDCFLLLVSRLTIGDTDQLGLYRPKLGPLELKKKTGKTPVLDVGTLAKIRNGSIKVFPGVKRFTCHAIEFVDGRTENFDAIILATGYKNNIPSWLKDNVLFSKKDGHSKKPFRPEGWKGENGLYSVGFAKRGLLGTSMDAERVAEDIELQW 416
            +Y  E++GK +HDP     K MTT+SR + V  PVI+GAGPSGLA AACL+QRGI SLILER NC+ASLW+LKTYDRLRLHLPKH CQLP MPFP+ FPTYPTK+QF++YL +Y   F ++P +N TVVSAEFD+ C FWR+KT    L L+  E EYV +WL+VA+GENAEEV P+ EGMD+F GPI+HTS YKSG  FR K VLVVGCGNSGME+CLDLCN  ARPSLVVR ++HVLPQEMLGRSTFG+SMWLLKW P+R VD  LLL+SR TIGDT + GL+RP+LGPLELK ++GKTPVLDVGTL KI++G+IKV+PG+KR T +A EFVDG  ENFDA+ILATGYK+N+P WLKD  LFS+KDG  ++PF P GWKGE GLY+VGF KRGLLG+S+DA+R+AEDI LQW
Sbjct:    2 DYCKEVEGKGVHDPF---NKNMTTSSRCVWVPYPVIIGAGPSGLATAACLKQRGISSLILERENCIASLWKLKTYDRLRLHLPKHFCQLPFMPFPESFPTYPTKKQFLSYLESYKNHFGLDPVFNKTVVSAEFDHRCGFWRIKT----LGLKHEETEYVSRWLIVATGENAEEVVPKIEGMDDFSGPILHTSSYKSGRLFRGKDVLVVGCGNSGMEVCLDLCNCEARPSLVVRASVHVLPQEMLGRSTFGLSMWLLKWFPVRIVDRLLLLLSRFTIGDTGKFGLHRPQLGPLELKSRSGKTPVLDVGTLDKIKSGNIKVYPGIKRITYNAAEFVDGTKENFDAVILATGYKSNVPQWLKDRDLFSEKDGLPREPF-PNGWKGECGLYAVGFTKRGLLGSSLDAKRIAEDIALQW 407
[Close]
BLAST of XM_017366520.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J8SJH8 (Flavin-containing monooxygenase {ECO:0000256|RuleBase:RU361177} (1.-.-.- {ECO:0000256|RuleBase:RU361177}))

HSP 1 Score: 593.193 bits (1528), Expect = 0.000e+0
Identity = 287/414 (69.32%), Postives = 342/414 (82.61%), Query Frame = 0
 
Query:    4 NYLTELDGKRLHDPRLTRPKTMTTTSR-IRVEGPVIVGAGPSGLAVAACLRQRGIPSLILERANCLASLWQLKTYDRLRLHLPKHLCQLPHMPFPQDFPTYPTKQQFVAYLMAYAKAFHIEPEYNTTVVSAEFDNNCDFWRMKTVKGELELESGEIEYVCKWLVVASGENAEEVKPEFEGMDEFRGPIIHTSHYKSGDPFRDKRVLVVGCGNSGMEICLDLCNYNARPSLVVRDTLHVLPQEMLGRSTFGVSMWLLKWLPIRFVDCFLLLVSRLTIGDTDQLGLYRPKLGPLELKKKTGKTPVLDVGTLAKIRNGSIKVFPGVKRFTCHAIEFVDGRTENFDAIILATGYKNNIPSWLKDNVLFSKKDGHSKKPFRPEGWKGENGLYSVGFAKRGLLGTSMDAERVAEDIELQW 416
            +Y  E++GK +HDP     K MTT+SR + V  PVI+GAGPSGLA AACL+QRGI SLILER NC+ASLW+LKTYDRLRLHLPKH CQLP MPFP+ FPTYPTK+QF++YL +Y   F ++P +N TVVSAEFD+ C FWR+KT    L L+  E EYV +WL+VA+GENAEEV P+ EGMD+F GPI+HTS YKSG  FR K VLVVGCGNSGME+CLDLCN  ARPSLVVR ++HVLPQEMLGRSTFG+SMWLLKW P+R VD  LLL+SR TIGDT + GL+RP+LGPLELK ++GKTPVLDVGTL KI++G+IKV+PG+KR T +A EFVDG  ENFDA+ILATGYK+N+P WLKD  LFS+KDG  ++PF P GWKGE GLY+VGF KRGLLG+S+DA+R+AEDI LQW
Sbjct:    2 DYCKEVEGKGVHDPF---NKNMTTSSRCVWVPYPVIIGAGPSGLATAACLKQRGISSLILERENCIASLWKLKTYDRLRLHLPKHFCQLPFMPFPESFPTYPTKKQFLSYLESYKNHFGLDPVFNKTVVSAEFDHRCGFWRIKT----LGLKHEETEYVSRWLIVATGENAEEVVPKIEGMDDFSGPILHTSSYKSGRLFRGKDVLVVGCGNSGMEVCLDLCNCEARPSLVVRASVHVLPQEMLGRSTFGLSMWLLKWFPVRIVDRLLLLLSRFTIGDTGKFGLHRPQLGPLELKSRSGKTPVLDVGTLDKIKSGNIKVYPGIKRITYNAAEFVDGTKENFDAVILATGYKSNVPQWLKDRDLFSEKDGLPREPF-PNGWKGECGLYAVGFTKRGLLGSSLDAKRIAEDIALQW 407
[Close]
BLAST of XM_017366520.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1R3GJ12 (Flavin-containing monooxygenase {ECO:0000256|RuleBase:RU361177} (1.-.-.- {ECO:0000256|RuleBase:RU361177}))

HSP 1 Score: 593.193 bits (1528), Expect = 0.000e+0
Identity = 285/422 (67.54%), Postives = 344/422 (81.52%), Query Frame = 0
 
Query:    1 MDYNYLTELDGKRLHDPRLTRPKTMTTTSRIRVEGPVIVGAGPSGLAVAACLRQRGIPSLILERANCLASLWQLKTYDRLRLHLPKHLCQLPHMPFPQDFPTYPTKQQFVAYLMAYAKAFHIEPEYNTTVVSAEFDNNCDFWRMKTVKGELELESGEIEYVCKWLVVASGENAEEVKPEFEGMDEFRGPIIHTSHYKSGDPFRDKRVLVVGCGNSGMEICLDLCNYNARPSLVVRDTLHVLPQEMLGRSTFGVSMWLLKWLPIRFVDCFLLLVSRLTIGDTDQLGLYRPKLGPLELKKKTGKTPVLDVGTLAKIRNGSIKVFPGVKRFTCHAIEFVDGRTENFDAIILATGYKNNIPSWLKDNVLFSKKDGHSKKPFRPEGWKGENGLYSVGFAKRGLLGTSMDAERVAEDIELQWYLKDSK 422
            MD++   EL+GKR+HDP  +R     +T R  V GPVI+GAGPSGLA AACL+Q+G+PSLILER NC+ASLW+LKTYDRLRLHLPK  C+LP MPFP +FPTYPTK+QFVAYL +Y   F ++P +N TVV+AEFD    FW++KT+  +   +  E EYV KWL+VA+GENAEEV PE +GMD+F GPI+HTS YKSG  FRDK VLVVGCGNSGME+CLDLCNYNARP+LVVRD++HVLPQEMLGRSTFG+SMWLLKW PI  VD FLLL+SR  +GDT++ GL+RPKLGPL+LK K+GKTPVLDVGTLA I++G+IKV PG+KR T  A EFV+GR ENFD IILATGYK+N+P WLK+   FS+KDG  ++ F P+GWKGE GLY+VGF KRGLLG SMDA+R+AEDIE  W L ++K
Sbjct:    1 MDFS--KELEGKRIHDP-FSRKMAKLSTRRKWVPGPVIIGAGPSGLAAAACLKQKGVPSLILERENCIASLWKLKTYDRLRLHLPKQFCELPFMPFPSNFPTYPTKEQFVAYLESYKDHFGLDPVFNQTVVNAEFDRKFGFWKVKTLGLK---QQEETEYVSKWLIVATGENAEEVVPEIDGMDDFGGPIVHTSSYKSGGMFRDKGVLVVGCGNSGMEVCLDLCNYNARPTLVVRDSVHVLPQEMLGRSTFGLSMWLLKWFPICLVDRFLLLISRFMLGDTEKFGLHRPKLGPLQLKNKSGKTPVLDVGTLAMIKSGNIKVCPGIKRITHRAAEFVNGRKENFDVIILATGYKSNVPQWLKETDFFSEKDGLPRESF-PKGWKGECGLYAVGFTKRGLLGASMDAKRIAEDIEPLWKLAEAK 415
Match NameStatsDescription
A0A2C9UB14E-Value: 0.000e+0, PID: 69.98Flavin-containing monooxygenase {ECO:0000256|RuleB... [more]
A0A2R6QV24E-Value: 0.000e+0, PID: 70.02Flavin-containing monooxygenase {ECO:0000256|RuleB... [more]
B9RKR3E-Value: 0.000e+0, PID: 68.93Flavin-containing monooxygenase {ECO:0000256|RuleB... [more]
A0A6A6LTV7E-Value: 0.000e+0, PID: 67.98Flavin-containing monooxygenase {ECO:0000256|RuleB... [more]
A0A4S4CZQ9E-Value: 0.000e+0, PID: 68.32Flavin-containing monooxygenase {ECO:0000256|RuleB... [more]
A0A6A1UP67E-Value: 0.000e+0, PID: 71.63Flavin-containing monooxygenase {ECO:0000256|RuleB... [more]
A0A200RCB3E-Value: 0.000e+0, PID: 69.73Flavin-containing monooxygenase {ECO:0000256|RuleB... [more]
A0A7J8VGA9E-Value: 0.000e+0, PID: 69.32Flavin-containing monooxygenase {ECO:0000256|RuleB... [more]
A0A7J8SJH8E-Value: 0.000e+0, PID: 69.32Flavin-containing monooxygenase {ECO:0000256|RuleB... [more]
A0A1R3GJ12E-Value: 0.000e+0, PID: 67.54Flavin-containing monooxygenase {ECO:0000256|RuleB... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.