XM_017365584.1

Resource Type: 
Polypeptide
Name: 
XM_017365584.1
Identifier: 
XM_017365584.1-protein
Sequence: 
MGKATRWLKGLFGMKKDKDPAENSTSGDRKNKNGQNVGHSGRGSTGLLHN
HATIPPNITPAEVSWLKSNFFNDSDSEQTKHAIAVAAATAAAADAAVAAA
QAAAEVVRLTSRANMLGGGRERTAAIKIQSLFRGYLSRKALRALRGLVKL
QALVRGFLVRKQATATLHSMQALIRAQATVRAQRGSAFIRKDSERFQSLF
RARKSIEKCDETRSEHATSVHSRRLSGTFDNTIDESPKIVEVDTGRPKSR
SRRSNTWVSDCIDDPHSQTLSSPLPCRVPSRIWIPDCRNCQESDWGLTGD
ECRFSTAQSTPRFANSAGSNAPLTPSKSVFLDGFFRQCTNSPSYMASTQS
FKAKSRSQSAPKQRPEAGQGSRKKLSLHDMMESRSSLSGVKMQRSCSQVQ
DVVTFKNAIMGKLDKSADLSKF
Sequence Length: 
422
Sequence Checksum: 
8d8e8a8ab7100e8dc2cc57d1b695d0a9
View location in JBrowse: 
DCARv2_Chr8:3416380..3417848+
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017365584.1, derives from mRNA, XM_017365584.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017365584.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017365584.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7B404 (DUF4005 domain-containing protein {ECO:0000259|Pfam:PF13178})

HSP 1 Score: 557.755 bits (1436), Expect = 0.000e+0
Identity = 305/424 (71.93%), Postives = 352/424 (83.02%), Query Frame = 0
 
Query:    1 MGKATRWLKGLFGMKKDKDPAENSTSGDRKNKNGQNVGHSGRGSTGLLHNHATIPPNITPAEVSWLKSNFFNDSDSEQTKHAIAVAAATAAAADAAVAAAQAAAEVVRLTS--RANMLGGGRERTAAIKIQSLFRGYLSRKALRALRGLVKLQALVRGFLVRKQATATLHSMQALIRAQATVRAQRGSAFIRKDSERFQSLFRARKSIEKCDETRSEHATSVHSRRLSGTFD---NTIDESPKIVEVDTGRPKSRSRRSNTWVSDCIDDPHSQTLSSPLPCRVPSRIWIPDCRNCQESDWGLTGDECRFSTAQSTPRFANSAGSNAPLTPSKSVFLDGFFRQCTNSPSYMASTQSFKAKSRSQSAPKQRPEAGQGSRKKLSLHDMMESRSSLSGVKMQRSCSQVQDVVTFKNAIMGKLDKSADL 419
            MGKATRWLKGLFG+KKDK+  ENS+SGDRK+K   + GHSGR S GL HN ATIPPNIT AE +WL+S F+ ++++EQ K AIAVAAATAAAADAAVAAAQAA  VVRLTS  R  M GGGRER AA+KIQ+ FRGYL+RKAL+AL+GLVKLQALVRG+LVRKQATATLHSMQAL+RAQATVRAQR   FI  D  RF S FRARKSIE+ D+ RSEH TS+HSRRLS +FD   NTI+ SPKIVEVDTGRPKSRSRR+NT VSD  DDP  QTLSSPLPCR P+R+ IPDCRN   +DWGLTGDECRFSTAQSTPRF N  G NAP+TP+KSV  + +F Q TN P+YMA+TQSFKAK RS SAP+QR E   G +K+LSL++MMESR+SLSGV+MQRSC+QVQ+V+ FKNA+M KLD+SA+ 
Sbjct:    1 MGKATRWLKGLFGIKKDKEQKENSSSGDRKDKKRWSFGHSGRDSGGLCHNPATIPPNITAAEATWLRS-FYGETENEQNKQAIAVAAATAAAADAAVAAAQAAVAVVRLTSQGRGTMFGGGRERWAAVKIQTFFRGYLARKALKALKGLVKLQALVRGYLVRKQATATLHSMQALVRAQATVRAQRTRGFINND-HRFHSQFRARKSIERFDDMRSEHTTSIHSRRLSASFDTTINTIEGSPKIVEVDTGRPKSRSRRTNTSVSDSGDDPFGQTLSSPLPCRFPARLSIPDCRNFHATDWGLTGDECRFSTAQSTPRFVNCDGFNAPVTPAKSVCAESYFGQYTNHPNYMANTQSFKAKLRSHSAPRQRHEP--GPKKRLSLNEMMESRNSLSGVRMQRSCTQVQEVINFKNAVMAKLDRSAEF 420
[Close]
BLAST of XM_017365584.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5C7HXB7 (DUF4005 domain-containing protein {ECO:0000259|Pfam:PF13178})

HSP 1 Score: 539.265 bits (1388), Expect = 0.000e+0
Identity = 299/428 (69.86%), Postives = 349/428 (81.54%), Query Frame = 0
 
Query:    1 MGKATRWLKGLFGMKKDKDPAENSTSGDRK-NKNGQNVGHSGRGSTGLLHNHATIPPNITPAEVSWLKSNFFNDSDSEQTKHAIAVAAATAAAADAAVAAAQAAAEVVRLTS--RANMLGGGRERTAAIKIQSLFRGYLSRKALRALRGLVKLQALVRGFLVRKQATATLHSMQALIRAQATVRAQRGSAFIRKDSERFQSLFRARKSIEKCDETRSEHATSVHSRRLSGTFD---NTIDESPKIVEVDTGRPKSRSRRSNTWVSDCIDDPHSQTLSSPLPCRVPSRIWIPDCRNCQESDWGLTGDECRFSTAQSTPR-FANSAGSNAPLTPSKSVFLDGFFRQCTNSPSYMASTQSFKAKSRSQSAPKQRPEAGQGSRKKLSLHDMMESRSSLSGVKMQRSCSQVQDVVTFKNAIMGKLDKSADLSK 421
            MG+ATRWLKGLFG+K +  P+ NS  GDR+ NK     GHSGR S  L HN  TIPPNI+PAE +WL+S +++++D EQ KHAIAVAAATAAAADAAVAAA AA  VVRLTS  R  M GGG+ER AA+KIQ++FRGYL+RKALRALRGLVKLQA VRG+LVRKQATATLHSMQALIRAQATVR+QR +  +   + RF S  RARKS+E+ DETRSEH  S+HSRRLS + D   NTIDESPKIVEVDTGRPKSRSRR+NT VSD  DDPH QT+SSPLP R+P+R+ IPDCRN  ESDWGLTGDECRFSTAQSTPR F N  GS AP+TP+KSV  D FFRQ TN P+YMAST+SFKAK RS SAPKQRPEA  G +++LSL++MMESRSSLSG++MQRSCSQVQ+ + FKN +MGKLD+  + ++
Sbjct:    1 MGRATRWLKGLFGIKSNNKPSSNS--GDRRENKRPSCFGHSGRDSNSLCHNPETIPPNISPAEAAWLRS-YYSETDKEQNKHAIAVAAATAAAADAAVAAANAAVAVVRLTSHGRGTMFGGGQERWAAVKIQTIFRGYLARKALRALRGLVKLQAHVRGYLVRKQATATLHSMQALIRAQATVRSQRVARGLINSNNRFDS--RARKSMERFDETRSEHTVSIHSRRLSASLDTTFNTIDESPKIVEVDTGRPKSRSRRTNTSVSDYSDDPHYQTISSPLPSRIPARLSIPDCRNYPESDWGLTGDECRFSTAQSTPRFFINLDGSKAPVTPAKSVCADNFFRQYTNHPNYMASTKSFKAKLRSHSAPKQRPEA--GPKRRLSLNEMMESRSSLSGIRMQRSCSQVQEAINFKNTVMGKLDRPTEFAR 421
[Close]
BLAST of XM_017365584.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A061GU39 ((Iq-domain 31 {ECO:0000313|EMBL:EOY30634.1}))

HSP 1 Score: 533.487 bits (1373), Expect = 0.000e+0
Identity = 294/426 (69.01%), Postives = 346/426 (81.22%), Query Frame = 0
 
Query:    1 MGKATRWLKGLFGMKKDKDPAENSTSGDRKNKNGQNVGHSGR-GSTGLLHNHATIPPNITPAEVSWLKSNFFNDSDSEQTKHAIAVAAATAAAADAAVAAAQAAAEVVRLTS--RANMLGGGRERTAAIKIQSLFRGYLSRKALRALRGLVKLQALVRGFLVRKQATATLHSMQALIRAQATVRAQRGSAFIRKDSERFQSLFRARKSIEKCDETRSEHATSVHSRRLSGTFDN--TIDESPKIVEVDTGRPKSRSRRSNTWVSDCIDDPHSQTLSSPLPCRVPSRIWIPDCRNCQESDWGLTGDECRFSTAQSTPRFANSAGSNAPLTPSKSVFLDGFFRQCTNSPSYMASTQSFKAKSRSQSAPKQRPEAGQGSRKKLSLHDMMESRSSLSGVKMQRSCSQVQDVVTFKNAIMGKLDKSADLSK 421
            MG+ATRWLKGLFG+K  KD    S S DR+++   + GHSGR  S  L HN  TIPPNI+PAE +WL+S ++N+++ EQ KHAIAVAAATAAAADAAVAAAQAA  VVRLTS  R  M GGGRER AA+KIQ++FRGYL+RKALRAL+GLVK+QALVRG+LVRKQATATLHSMQALIRAQAT+R+Q+    I  D+ RF    RARKS+E+ D+TRSEH  S HSRRLS + D    IDESPKIVEVDTGRPKSRSRR+NT VSD  DDP  QTLSSPLP RVP+R+ +PD R+CQE+DWGLTGDECRFSTAQSTPRF NS GSNAP+TP+KSV  +  FR   N P+YMASTQSFKAK RS SAPKQRPE   G +K+LSL++MMESRSSLSGV+MQRSCSQVQ+ + FKNA++GKLD+S++  +
Sbjct:   17 MGRATRWLKGLFGLKNSKD---YSNSSDRRDQKKCSSGHSGRDASAALCHNPTTIPPNISPAEAAWLRS-YYNETEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFGGGRERWAAVKIQTVFRGYLARKALRALKGLVKIQALVRGYLVRKQATATLHSMQALIRAQATIRSQKARGLINHDANRFD--IRARKSMERFDDTRSEHTVSFHSRRLSASLDTAINIDESPKIVEVDTGRPKSRSRRTNTSVSDFSDDPPYQTLSSPLPSRVPARLSLPDSRHCQETDWGLTGDECRFSTAQSTPRFINSCGSNAPVTPAKSVCAENLFRHYGNFPNYMASTQSFKAKLRSHSAPKQRPEP--GPKKRLSLNEMMESRSSLSGVRMQRSCSQVQEAINFKNAVLGKLDRSSEFGR 434
[Close]
BLAST of XM_017365584.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: D7TBF5 (DUF4005 domain-containing protein {ECO:0000259|Pfam:PF13178})

HSP 1 Score: 530.406 bits (1365), Expect = 0.000e+0
Identity = 294/428 (68.69%), Postives = 347/428 (81.07%), Query Frame = 0
 
Query:    1 MGKATRWLKGLFGMKKDKDPAENSTSGDRKNKNGQNVGHSGRGSTGLLHNHATIPPNITPAEVSWLKSNFFNDSDSEQTKHAIAVAAATAAAADAAVAAAQAAAEVVRLTS--RANMLGGGRERTAAIKIQSLFRGYLSRKALRALRGLVKLQALVRGFLVRKQATATLHSMQALIRAQATVRAQRGSAFIRKDSERFQSLFRARKSIEKCDETRSEHATSVHSRRLSGTFD---NTIDESPKIVEVDTGRPKSRSRRSNTWVSDCIDDPHSQTLSSPLPCR----VPSRIWIPDCRNCQESDWGLTGDECRFSTAQSTPRFANSAGSNAPLTPSKSVFLDGFFRQCTNSPSYMASTQSFKAKSRSQSAPKQRPEAGQGSRKKLSLHDMMESRSSLSGVKMQRSCSQVQDVVTFKNAIMGKLDKSADL 419
            MG+ATRW KGLFG+K+DK+  +NS  GDRK+K+  + GHSGR S GL HN  TIPPNI+ AE +WL+S ++ D+++EQ KHAIAVAAATAAAADAAVAAAQAA  VVRLTS  R  M GGGRER  A+KIQ++FRGYL+RKALRAL+GLVKLQALVRG+LVRKQATATLH MQALIRAQATVRAQ+    I  + +RF+   + RKS+E+ DE+RSEH  S+HSRRLS + D   N ID SPKIVEVDTGRPKSRSRR+NT VSD  DD H QTLSSPLPCR    VP R+  PD RN Q+SDWGLTGDECRFSTAQSTPRF NS  SN P+TP+K+V  D FFRQ TN P+YMA+TQSFKAK RS SAPKQRPE   G +K+LSL++MMESRSSLSGVKMQRSCS+VQ+ + FKNA+MGKL++ +++
Sbjct:    1 MGRATRWFKGLFGLKRDKEHKDNSNPGDRKDKSRWSSGHSGRDSVGLCHNPTTIPPNISAAEAAWLRS-YYTDTENEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFGGGRERWGAVKIQTVFRGYLARKALRALKGLVKLQALVRGYLVRKQATATLHGMQALIRAQATVRAQKARELI-SNEKRFE--IQTRKSMERFDESRSEHTASIHSRRLSASLDTTFNAIDGSPKIVEVDTGRPKSRSRRTNTSVSDSGDDQHYQTLSSPLPCRTPIPVPVRLSTPDHRNYQDSDWGLTGDECRFSTAQSTPRFMNSERSNVPITPAKTVCADSFFRQYTNFPNYMANTQSFKAKLRSHSAPKQRPEP--GPKKRLSLNEMMESRSSLSGVKMQRSCSRVQEAINFKNAVMGKLERPSEI 422
[Close]
BLAST of XM_017365584.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438DS39 ((Protein IQ-DOMAIN 31 {ECO:0000313|EMBL:RVW38299.1}))

HSP 1 Score: 530.406 bits (1365), Expect = 0.000e+0
Identity = 294/428 (68.69%), Postives = 347/428 (81.07%), Query Frame = 0
 
Query:    1 MGKATRWLKGLFGMKKDKDPAENSTSGDRKNKNGQNVGHSGRGSTGLLHNHATIPPNITPAEVSWLKSNFFNDSDSEQTKHAIAVAAATAAAADAAVAAAQAAAEVVRLTS--RANMLGGGRERTAAIKIQSLFRGYLSRKALRALRGLVKLQALVRGFLVRKQATATLHSMQALIRAQATVRAQRGSAFIRKDSERFQSLFRARKSIEKCDETRSEHATSVHSRRLSGTFD---NTIDESPKIVEVDTGRPKSRSRRSNTWVSDCIDDPHSQTLSSPLPCR----VPSRIWIPDCRNCQESDWGLTGDECRFSTAQSTPRFANSAGSNAPLTPSKSVFLDGFFRQCTNSPSYMASTQSFKAKSRSQSAPKQRPEAGQGSRKKLSLHDMMESRSSLSGVKMQRSCSQVQDVVTFKNAIMGKLDKSADL 419
            MG+ATRW KGLFG+K+DK+  +NS  GDRK+K+  + GHSGR S GL HN  TIPPNI+ AE +WL+S ++ D+++EQ KHAIAVAAATAAAADAAVAAAQAA  VVRLTS  R  M GGGRER  A+KIQ++FRGYL+RKALRAL+GLVKLQALVRG+LVRKQATATLH MQALIRAQATVRAQ+    I  + +RF+   + RKS+E+ DE+RSEH  S+HSRRLS + D   N ID SPKIVEVDTGRPKSRSRR+NT VSD  DD H QTLSSPLPCR    VP R+  PD RN Q+SDWGLTGDECRFSTAQSTPRF NS  SN P+TP+K+V  D FFRQ TN P+YMA+TQSFKAK RS SAPKQRPE   G +K+LSL++MMESRSSLSGVKMQRSCS+VQ+ + FKNA+MGKL++ +++
Sbjct:    1 MGRATRWFKGLFGLKRDKEHKDNSNPGDRKDKSRWSSGHSGRDSVGLCHNPTTIPPNISAAEAAWLRS-YYTDTENEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFGGGRERWGAVKIQTVFRGYLARKALRALKGLVKLQALVRGYLVRKQATATLHGMQALIRAQATVRAQKARELI-SNEKRFE--IQTRKSMERFDESRSEHTASIHSRRLSASLDTTFNAIDGSPKIVEVDTGRPKSRSRRTNTSVSDSGDDQHYQTLSSPLPCRTPIPVPVRLSTPDHRNYQDSDWGLTGDECRFSTAQSTPRFMNSERSNVPITPAKTVCADSFFRQYTNFPNYMANTQSFKAKLRSHSAPKQRPEP--GPKKRLSLNEMMESRSSLSGVKMQRSCSRVQEAINFKNAVMGKLERPSEI 422
[Close]
BLAST of XM_017365584.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J6H5T2 (DUF4005 domain-containing protein {ECO:0000259|Pfam:PF13178})

HSP 1 Score: 524.628 bits (1350), Expect = 0.000e+0
Identity = 293/429 (68.30%), Postives = 345/429 (80.42%), Query Frame = 0
 
Query:    1 MGKATRWLKGLFGMKKDKDPAENSTSGDRKNKNGQNVGHSGRG-STGLLHNHATIPPNITPAEVSWLKSNFFNDSDSEQTKHAIAVAAATAAAADAAVAAAQAAAEVVRLTS--RANMLGGGRERTAAIKIQSLFRGYLSRKALRALRGLVKLQALVRGFLVRKQATATLHSMQALIRAQATVRAQRGSAFIRKDS--ERFQSLFRARKSIEKCDETRSEHATSVHSRRLSGTFDN---TIDESPKIVEVDTGRPKSRSRRSNTWVSDCIDDPHSQTLSSPLPCRVPSRIWIPDCRNCQESDWGLTGDECRFSTAQSTPRFANSAGSNAPLTPSKSVFLDGFFRQCTNSPSYMASTQSFKAKSRSQSAPKQRPEAGQGSRKKLSLHDMMESRSSLSGVKMQRSCSQVQDVVTFKNAIMGKLDKSADLSK 421
            MGKA RWLKGLFGMKK+KD   NS SGDRK+K    V  SG+  S GL HN ATIPPN++ AE SWL+S ++ND++ EQ KHAIAVAAATAAAADAAVAAAQAA  VVRLTS  R  M  G  E+ A +KIQ++FRGYL+RKALRAL+GLVKLQALVRG+LVRKQATATLH MQALIRAQATVR+Q+   FI  +    RF +  RARKS+E+ D+++S+H   +HSRRLS + D    TIDESPKIVEVDTGRPKSRSRR+NT VSD  DDP  Q LSSPLPCR+P+RI IPDCRNCQES+WG TGDECRFSTAQSTPRF NSA SNAP TP+KSV  D +FR   N P+YMA+T+SFKAK RS SAPKQRPE   G +K+LSL+++MESR+SLSGV+MQRSCSQVQD ++FKN +MGKLD+ +D+ +
Sbjct:    1 MGKAMRWLKGLFGMKKEKDYKPNSNSGDRKDKT---VFSSGKEYSDGLCHNPATIPPNLSSAEASWLRS-YYNDTEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFQGSHEKWAVVKIQTVFRGYLARKALRALKGLVKLQALVRGYLVRKQATATLHGMQALIRAQATVRSQKTRGFIFNNETISRFDN--RARKSMERFDDSKSDHIAPIHSRRLSASLDTSFTTIDESPKIVEVDTGRPKSRSRRTNTSVSDFGDDPSCQALSSPLPCRIPTRISIPDCRNCQESEWGFTGDECRFSTAQSTPRFLNSAASNAPTTPAKSVCADNYFRGYGNYPNYMANTKSFKAKLRSYSAPKQRPEP--GPKKRLSLNELMESRNSLSGVRMQRSCSQVQDAISFKNTVMGKLDRCSDVGR 421
[Close]
BLAST of XM_017365584.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J0ZQ82 ((protein IQ-DOMAIN 14-like {ECO:0000313|RefSeq:XP_021276774.1, ECO:0000313|RefSeq:XP_021276775.1}))

HSP 1 Score: 523.472 bits (1347), Expect = 0.000e+0
Identity = 290/426 (68.08%), Postives = 346/426 (81.22%), Query Frame = 0
 
Query:    1 MGKATRWLKGLFGMKKDKDPAENSTSGDRKNKNGQNVGHSGR-GSTGLLHNHATIPPNITPAEVSWLKSNFFNDSDSEQTKHAIAVAAATAAAADAAVAAAQAAAEVVRLTS--RANMLGGGRERTAAIKIQSLFRGYLSRKALRALRGLVKLQALVRGFLVRKQATATLHSMQALIRAQATVRAQRGSAFIRKDSERFQSLFRARKSIEKCDETRSEHATSVHSRRLSGTFDN--TIDESPKIVEVDTGRPKSRSRRSNTWVSDCIDDPHSQTLSSPLPCRVPSRIWIPDCRNCQESDWGLTGDECRFSTAQSTPRFANSAGSNAPLTPSKSVFLDGFFRQCTNSPSYMASTQSFKAKSRSQSAPKQRPEAGQGSRKKLSLHDMMESRSSLSGVKMQRSCSQVQDVVTFKNAIMGKLDKSADLSK 421
            MG+ATRWLKGLFG+K  KD    S S DR++K   ++GHSGR  ST L HN  TIPPNI+PAE +WL+S ++N+++ EQ KHAIAVAAATAAAADAAVAAAQAA  VVRLTS  R  M GGG ER AA+KIQ++FRGYL+RKALRAL+GLVK+QALVRG+LVRKQATATL SMQALIRAQAT+R+Q+    I  D+ RF    RARKS+E+ D+TRSEH  S+HSRRLS + D   +IDESPKIVEVDTGRPKSRSRR+NT VSD  DDP  QTLSSPLP R P+R+ +PD R+ QE+DWGLTGDECRFSTAQSTPRF NS GSNAP+TP+KSV  +  FR   N P+YMA+TQSFKAK RS SAPKQRPE   G +K+LSL++M+ESRSSLSGV+MQRSCSQVQ+ + FKNA++GKLD+S++  +
Sbjct:    1 MGRATRWLKGLFGIKNRKD---YSNSSDRRDKKKCSIGHSGRDSSTALCHNPTTIPPNISPAEAAWLRS-YYNETEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFGGGHERWAAVKIQTVFRGYLARKALRALKGLVKIQALVRGYLVRKQATATLRSMQALIRAQATIRSQKARGLINHDANRFD--IRARKSMERFDDTRSEHTVSIHSRRLSASLDTAISIDESPKIVEVDTGRPKSRSRRTNTSVSDFSDDPPYQTLSSPLPSRAPARLSLPDSRHFQETDWGLTGDECRFSTAQSTPRFINSCGSNAPVTPAKSVCAENHFRHYGNFPNYMANTQSFKAKLRSHSAPKQRPEP--GPKKRLSLNEMLESRSSLSGVRMQRSCSQVQEAINFKNAVIGKLDRSSEFGR 418
[Close]
BLAST of XM_017365584.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1Q3CVT4 ((IQ domain-containing protein/DUF4005 domain-containing protein {ECO:0000313|EMBL:GAV84340.1}))

HSP 1 Score: 522.702 bits (1345), Expect = 0.000e+0
Identity = 293/425 (68.94%), Postives = 340/425 (80.00%), Query Frame = 0
 
Query:    1 MGKATRWLKGLFGMKKDKDPAENSTSGDRKNKNGQNVGHSGRGSTGLL-HNHATIPPNITPAEVSWLKSNFFNDSDSEQTKHAIAVAAATAAAADAAVAAAQAAAEVVRLTS--RANMLGGGRERTAAIKIQSLFRGYLSRKALRALRGLVKLQALVRGFLVRKQATATLHSMQALIRAQATVRAQRGSAFIRKDSERFQSLFRARKSIEKCDETRSEHATSVHSRRLSGTFD---NTIDESPKIVEVDTGRPKSRSRRSNTWVSDCIDDPHSQTLSSPLPCRVPSRIWIPDCRNCQESDWGLTGDECRFSTAQSTPRFANSAGSNAPLTPSKSVFLDGFFRQCTNSPSYMASTQSFKAKSRSQSAPKQRPEAGQGSRKKLSLHDMMESRSSLSGVKMQRSCSQVQDVVTFKNAIMGKLDKSADL 419
            MG+ATRWLKGLFG+K +K   ENS SGD+K+K     GHSGR   G L HN  TIPPNI+ AE +WL+S +FND++ EQ KHAIAVAAATAAAADAAVAAAQAA  VVRLTS  R  M GG  ER AA+KIQ+ F+GYL+RKALRAL+GLVKLQALVRG+LVRKQATAT HSMQALIRAQAT+R QR       +  R++   RAR S+E+ DETRSEH  S+HSRRLS + D   NTIDESPKIVEVDTGRPK RSRR+NT VSD  DDP  QTLSSPLP R+P+R+ IPDCRN Q+ +WGLTGDECRFSTA STPRF NS+GSNAP+TP+KS   D FFRQ  N P+YMA+TQSFKAK RS SAPKQRPE   G +KK+SL +MMESRSSLSG++MQRSCSQVQ+ + FKNA++GKLD+S +L
Sbjct:    1 MGRATRWLKGLFGIKTNK---ENSNSGDKKDKQRCGFGHSGRDQKGFLCHNPTTIPPNISAAEATWLRS-YFNDTEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFGGACERWAALKIQAAFKGYLARKALRALKGLVKLQALVRGYLVRKQATATFHSMQALIRAQATIRFQRIRGLT-NNHNRYE--IRARNSMERVDETRSEHTASIHSRRLSASLDSTINTIDESPKIVEVDTGRPKLRSRRTNTSVSDYSDDPFYQTLSSPLPSRIPARLSIPDCRNFQDCEWGLTGDECRFSTAHSTPRFVNSSGSNAPVTPAKSACADNFFRQYGNFPNYMANTQSFKAKLRSHSAPKQRPEP--GPKKKISLDEMMESRSSLSGIRMQRSCSQVQETINFKNAVIGKLDRSIEL 416
[Close]
BLAST of XM_017365584.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J6HUK5 (DUF4005 domain-containing protein {ECO:0000259|Pfam:PF13178})

HSP 1 Score: 518.85 bits (1335), Expect = 0.000e+0
Identity = 293/433 (67.67%), Postives = 345/433 (79.68%), Query Frame = 0
 
Query:    1 MGKATRWLKGLFGMKKDKDPAENSTSGDRKNKNGQNVGHSGRG-STGLLHNHATIPPNITPAEVSWLKSNFFNDSDSEQTKHAIAVAAATAAAADAAVAAAQAAAEVVRLTS--RANMLGGGRERTAAIKIQSLFRGYLSRKALRALRGLVKLQALVRGFLVRKQATATLHSMQALIRAQATVRAQRGSAFIRKDS--ERFQSLFRARKSI----EKCDETRSEHATSVHSRRLSGTFDN---TIDESPKIVEVDTGRPKSRSRRSNTWVSDCIDDPHSQTLSSPLPCRVPSRIWIPDCRNCQESDWGLTGDECRFSTAQSTPRFANSAGSNAPLTPSKSVFLDGFFRQCTNSPSYMASTQSFKAKSRSQSAPKQRPEAGQGSRKKLSLHDMMESRSSLSGVKMQRSCSQVQDVVTFKNAIMGKLDKSADLSK 421
            MGKA RWLKGLFGMKK+KD   NS SGDRK+K    V  SG+  S GL HN ATIPPN++ AE SWL+S ++ND++ EQ KHAIAVAAATAAAADAAVAAAQAA  VVRLTS  R  M  G  E+ A +KIQ++FRGYL+RKALRAL+GLVKLQALVRG+LVRKQATATLH MQALIRAQATVR+Q+   FI  +    RF +  RARKS+    E+ D+++S+H   +HSRRLS + D    TIDESPKIVEVDTGRPKSRSRR+NT VSD  DDP  Q LSSPLPCR+P+RI IPDCRNCQES+WG TGDECRFSTAQSTPRF NSA SNAP TP+KSV  D +FR   N P+YMA+T+SFKAK RS SAPKQRPE   G +K+LSL+++MESR+SLSGV+MQRSCSQVQD ++FKN +MGKLD+ +D+ +
Sbjct:    1 MGKAMRWLKGLFGMKKEKDYKPNSNSGDRKDKT---VFSSGKEYSDGLCHNPATIPPNLSSAEASWLRS-YYNDTEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFQGSHEKWAVVKIQTVFRGYLARKALRALKGLVKLQALVRGYLVRKQATATLHGMQALIRAQATVRSQKTRGFIFNNETISRFDN--RARKSMSNLQERFDDSKSDHIAPIHSRRLSASLDTSFTTIDESPKIVEVDTGRPKSRSRRTNTSVSDFGDDPSCQALSSPLPCRIPTRISIPDCRNCQESEWGFTGDECRFSTAQSTPRFLNSAASNAPTTPAKSVCADNYFRGYGNYPNYMANTKSFKAKLRSYSAPKQRPEP--GPKKRLSLNELMESRNSLSGVRMQRSCSQVQDAISFKNTVMGKLDRCSDVGR 425
[Close]
BLAST of XM_017365584.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438IHY5 ((Protein IQ-domain 31 {ECO:0000313|EMBL:RVW96314.1}))

HSP 1 Score: 518.85 bits (1335), Expect = 0.000e+0
Identity = 289/427 (67.68%), Postives = 344/427 (80.56%), Query Frame = 0
 
Query:    2 GKATRWLKGLFGMKKDKDPAENSTSGDRKNKNGQNVGHSGRGSTGLLHNHATIPPNITPAEVSWLKSNFFNDSDSEQTKHAIAVAAATAAAADAAVAAAQAAAEVVRLTS--RANMLGGGRERTAAIKIQSLFRGYLSRKALRALRGLVKLQALVRGFLVRKQATATLHSMQALIRAQATVRAQRGSAFIRKDSERFQSLFRARKSIEKCDETRSEHATSVHSRRLSGTFD---NTIDESPKIVEVDTGRPKSRSRRSNTWVSDCIDDPHSQTLSSPLPCR----VPSRIWIPDCRNCQESDWGLTGDECRFSTAQSTPRFANSAGSNAPLTPSKSVFLDGFFRQCTNSPSYMASTQSFKAKSRSQSAPKQRPEAGQGSRKKLSLHDMMESRSSLSGVKMQRSCSQVQDVVTFKNAIMGKLDKSADL 419
            GK  + ++GLFG+K+DK+  +NS  GDRK+K+  + GHSGR S GL HN  TIPPNI+ AE +WL+S ++ D+++EQ KHAIAVAAATAAAADAAVAAAQAA  VVRLTS  R  M GGGRER  A+KIQ++FRGYL+RKALRAL+GLVKLQALVRG+LVRKQATATLH MQALIRAQATVRAQ+    I  + +RF+   + RKS+E+ DE+RSEH  S+HSRRLS + D   N ID SPKIVEVDTGRPKSRSRR+NT VSD  DD H QTLSSPLPCR    VP R+  PD RN Q+SDWGLTGDECRFSTAQSTPRF NS  SN P+TP+K+V  D FFRQ TN P+YMA+TQSFKAK RS SAPKQRPE   G +K+LSL++MMESRSSLSGVKMQRSCS+VQ+ + FKNA+MGKL++ +++
Sbjct:   24 GKGNKVVQGLFGLKRDKEHKDNSNPGDRKDKSRWSSGHSGRDSVGLCHNPTTIPPNISAAEAAWLRS-YYTDTENEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFGGGRERWGAVKIQTVFRGYLARKALRALKGLVKLQALVRGYLVRKQATATLHGMQALIRAQATVRAQKARELI-SNEKRFE--IQTRKSMERFDESRSEHTASIHSRRLSASLDTTFNAIDGSPKIVEVDTGRPKSRSRRTNTSVSDSGDDQHYQTLSSPLPCRTPIPVPVRLSTPDHRNYQDSDWGLTGDECRFSTAQSTPRFMNSERSNVPITPAKTVCADSFFRQYTNFPNYMANTQSFKAKLRSHSAPKQRPEP--GPKKRLSLNEMMESRSSLSGVKMQRSCSRVQEAINFKNAVMGKLERPSEI 444
Match NameStatsDescription
A0A5B7B404E-Value: 0.000e+0, PID: 71.93DUF4005 domain-containing protein {ECO:0000259|Pfa... [more]
A0A5C7HXB7E-Value: 0.000e+0, PID: 69.86DUF4005 domain-containing protein {ECO:0000259|Pfa... [more]
A0A061GU39E-Value: 0.000e+0, PID: 69.01(Iq-domain 31 {ECO:0000313|EMBL:EOY30634.1})[more]
D7TBF5E-Value: 0.000e+0, PID: 68.69DUF4005 domain-containing protein {ECO:0000259|Pfa... [more]
A0A438DS39E-Value: 0.000e+0, PID: 68.69(Protein IQ-DOMAIN 31 {ECO:0000313|EMBL:RVW38299.1... [more]
A0A7J6H5T2E-Value: 0.000e+0, PID: 68.30DUF4005 domain-containing protein {ECO:0000259|Pfa... [more]
A0A6J0ZQ82E-Value: 0.000e+0, PID: 68.08(protein IQ-DOMAIN 14-like {ECO:0000313|RefSeq:XP_... [more]
A0A1Q3CVT4E-Value: 0.000e+0, PID: 68.94(IQ domain-containing protein/DUF4005 domain-conta... [more]
A0A7J6HUK5E-Value: 0.000e+0, PID: 67.67DUF4005 domain-containing protein {ECO:0000259|Pfa... [more]
A0A438IHY5E-Value: 0.000e+0, PID: 67.68(Protein IQ-domain 31 {ECO:0000313|EMBL:RVW96314.1... [more]
back to top
Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.