Resource Type:
Polypeptide
Name:
XM_017365585.1
Identifier:
XM_017365585.1-protein
Sequence:
MGKATRWLKGLFGMKKDKDPAENSTSGDRKNKNGQNVGHSGRGSTGLLHN
HATIPPNITPAEVSWLKSNFFNDSDSEQTKHAIAVAAATAAAADAAVAAA
QAAAEVVRLTSRANMLGGGRERTAAIKIQSLFRGYLSRKALRALRGLVKL
QALVRGFLVRKQATATLHSMQALIRAQATVRAQRGSAFIRKDSERFQSLF
RARKSIKCDETRSEHATSVHSRRLSGTFDNTIDESPKIVEVDTGRPKSRS
RRSNTWVSDCIDDPHSQTLSSPLPCRVPSRIWIPDCRNCQESDWGLTGDE
CRFSTAQSTPRFANSAGSNAPLTPSKSVFLDGFFRQCTNSPSYMASTQSF
KAKSRSQSAPKQRPEAGQGSRKKLSLHDMMESRSSLSGVKMQRSCSQVQD
VVTFKNAIMGKLDKSADLSKF
Sequence Length:
421
Sequence Checksum:
729e9b77d65e8020f49a876ce22d7a97
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017365585.1, derives from mRNA, XM_017365585.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017365585.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017365585.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7B404 (DUF4005 domain-containing protein {ECO:0000259|Pfam:PF13178})
HSP 1 Score: 550.821 bits (1418), Expect = 0.000e+0
Identity = 304/424 (71.70%), Postives = 351/424 (82.78%), Query Frame = 0
Match: A0A5B7B404 (DUF4005 domain-containing protein {ECO:0000259|Pfam:PF13178})
HSP 1 Score: 550.821 bits (1418), Expect = 0.000e+0
Identity = 304/424 (71.70%), Postives = 351/424 (82.78%), Query Frame = 0
Query: 1 MGKATRWLKGLFGMKKDKDPAENSTSGDRKNKNGQNVGHSGRGSTGLLHNHATIPPNITPAEVSWLKSNFFNDSDSEQTKHAIAVAAATAAAADAAVAAAQAAAEVVRLTS--RANMLGGGRERTAAIKIQSLFRGYLSRKALRALRGLVKLQALVRGFLVRKQATATLHSMQALIRAQATVRAQRGSAFIRKDSERFQSLFRARKSI-KCDETRSEHATSVHSRRLSGTFD---NTIDESPKIVEVDTGRPKSRSRRSNTWVSDCIDDPHSQTLSSPLPCRVPSRIWIPDCRNCQESDWGLTGDECRFSTAQSTPRFANSAGSNAPLTPSKSVFLDGFFRQCTNSPSYMASTQSFKAKSRSQSAPKQRPEAGQGSRKKLSLHDMMESRSSLSGVKMQRSCSQVQDVVTFKNAIMGKLDKSADL 418
MGKATRWLKGLFG+KKDK+ ENS+SGDRK+K + GHSGR S GL HN ATIPPNIT AE +WL+S F+ ++++EQ K AIAVAAATAAAADAAVAAAQAA VVRLTS R M GGGRER AA+KIQ+ FRGYL+RKAL+AL+GLVKLQALVRG+LVRKQATATLHSMQAL+RAQATVRAQR FI D RF S FRARKSI + D+ RSEH TS+HSRRLS +FD NTI+ SPKIVEVDTGRPKSRSRR+NT VSD DDP QTLSSPLPCR P+R+ IPDCRN +DWGLTGDECRFSTAQSTPRF N G NAP+TP+KSV + +F Q TN P+YMA+TQSFKAK RS SAP+QR E G +K+LSL++MMESR+SLSGV+MQRSC+QVQ+V+ FKNA+M KLD+SA+
Sbjct: 1 MGKATRWLKGLFGIKKDKEQKENSSSGDRKDKKRWSFGHSGRDSGGLCHNPATIPPNITAAEATWLRS-FYGETENEQNKQAIAVAAATAAAADAAVAAAQAAVAVVRLTSQGRGTMFGGGRERWAAVKIQTFFRGYLARKALKALKGLVKLQALVRGYLVRKQATATLHSMQALVRAQATVRAQRTRGFINND-HRFHSQFRARKSIERFDDMRSEHTTSIHSRRLSASFDTTINTIEGSPKIVEVDTGRPKSRSRRTNTSVSDSGDDPFGQTLSSPLPCRFPARLSIPDCRNFHATDWGLTGDECRFSTAQSTPRFVNCDGFNAPVTPAKSVCAESYFGQYTNHPNYMANTQSFKAKLRSHSAPRQRHEP--GPKKRLSLNEMMESRNSLSGVRMQRSCTQVQEVINFKNAVMAKLDRSAEF 420
BLAST of XM_017365585.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5C7HXB7 (DUF4005 domain-containing protein {ECO:0000259|Pfam:PF13178})
HSP 1 Score: 532.717 bits (1371), Expect = 0.000e+0
Identity = 298/428 (69.63%), Postives = 348/428 (81.31%), Query Frame = 0
Match: A0A5C7HXB7 (DUF4005 domain-containing protein {ECO:0000259|Pfam:PF13178})
HSP 1 Score: 532.717 bits (1371), Expect = 0.000e+0
Identity = 298/428 (69.63%), Postives = 348/428 (81.31%), Query Frame = 0
Query: 1 MGKATRWLKGLFGMKKDKDPAENSTSGDRK-NKNGQNVGHSGRGSTGLLHNHATIPPNITPAEVSWLKSNFFNDSDSEQTKHAIAVAAATAAAADAAVAAAQAAAEVVRLTS--RANMLGGGRERTAAIKIQSLFRGYLSRKALRALRGLVKLQALVRGFLVRKQATATLHSMQALIRAQATVRAQRGSAFIRKDSERFQSLFRARKSI-KCDETRSEHATSVHSRRLSGTFD---NTIDESPKIVEVDTGRPKSRSRRSNTWVSDCIDDPHSQTLSSPLPCRVPSRIWIPDCRNCQESDWGLTGDECRFSTAQSTPR-FANSAGSNAPLTPSKSVFLDGFFRQCTNSPSYMASTQSFKAKSRSQSAPKQRPEAGQGSRKKLSLHDMMESRSSLSGVKMQRSCSQVQDVVTFKNAIMGKLDKSADLSK 420
MG+ATRWLKGLFG+K + P+ NS GDR+ NK GHSGR S L HN TIPPNI+PAE +WL+S +++++D EQ KHAIAVAAATAAAADAAVAAA AA VVRLTS R M GGG+ER AA+KIQ++FRGYL+RKALRALRGLVKLQA VRG+LVRKQATATLHSMQALIRAQATVR+QR + + + RF S RARKS+ + DETRSEH S+HSRRLS + D NTIDESPKIVEVDTGRPKSRSRR+NT VSD DDPH QT+SSPLP R+P+R+ IPDCRN ESDWGLTGDECRFSTAQSTPR F N GS AP+TP+KSV D FFRQ TN P+YMAST+SFKAK RS SAPKQRPEA G +++LSL++MMESRSSLSG++MQRSCSQVQ+ + FKN +MGKLD+ + ++
Sbjct: 1 MGRATRWLKGLFGIKSNNKPSSNS--GDRRENKRPSCFGHSGRDSNSLCHNPETIPPNISPAEAAWLRS-YYSETDKEQNKHAIAVAAATAAAADAAVAAANAAVAVVRLTSHGRGTMFGGGQERWAAVKIQTIFRGYLARKALRALRGLVKLQAHVRGYLVRKQATATLHSMQALIRAQATVRSQRVARGLINSNNRFDS--RARKSMERFDETRSEHTVSIHSRRLSASLDTTFNTIDESPKIVEVDTGRPKSRSRRTNTSVSDYSDDPHYQTISSPLPSRIPARLSIPDCRNYPESDWGLTGDECRFSTAQSTPRFFINLDGSKAPVTPAKSVCADNFFRQYTNHPNYMASTKSFKAKLRSHSAPKQRPEA--GPKRRLSLNEMMESRSSLSGIRMQRSCSQVQEAINFKNTVMGKLDRPTEFAR 421
BLAST of XM_017365585.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A061GU39 ((Iq-domain 31 {ECO:0000313|EMBL:EOY30634.1}))
HSP 1 Score: 526.168 bits (1354), Expect = 0.000e+0
Identity = 293/426 (68.78%), Postives = 345/426 (80.99%), Query Frame = 0
Match: A0A061GU39 ((Iq-domain 31 {ECO:0000313|EMBL:EOY30634.1}))
HSP 1 Score: 526.168 bits (1354), Expect = 0.000e+0
Identity = 293/426 (68.78%), Postives = 345/426 (80.99%), Query Frame = 0
Query: 1 MGKATRWLKGLFGMKKDKDPAENSTSGDRKNKNGQNVGHSGR-GSTGLLHNHATIPPNITPAEVSWLKSNFFNDSDSEQTKHAIAVAAATAAAADAAVAAAQAAAEVVRLTS--RANMLGGGRERTAAIKIQSLFRGYLSRKALRALRGLVKLQALVRGFLVRKQATATLHSMQALIRAQATVRAQRGSAFIRKDSERFQSLFRARKSI-KCDETRSEHATSVHSRRLSGTFDN--TIDESPKIVEVDTGRPKSRSRRSNTWVSDCIDDPHSQTLSSPLPCRVPSRIWIPDCRNCQESDWGLTGDECRFSTAQSTPRFANSAGSNAPLTPSKSVFLDGFFRQCTNSPSYMASTQSFKAKSRSQSAPKQRPEAGQGSRKKLSLHDMMESRSSLSGVKMQRSCSQVQDVVTFKNAIMGKLDKSADLSK 420
MG+ATRWLKGLFG+K KD S S DR+++ + GHSGR S L HN TIPPNI+PAE +WL+S ++N+++ EQ KHAIAVAAATAAAADAAVAAAQAA VVRLTS R M GGGRER AA+KIQ++FRGYL+RKALRAL+GLVK+QALVRG+LVRKQATATLHSMQALIRAQAT+R+Q+ I D+ RF RARKS+ + D+TRSEH S HSRRLS + D IDESPKIVEVDTGRPKSRSRR+NT VSD DDP QTLSSPLP RVP+R+ +PD R+CQE+DWGLTGDECRFSTAQSTPRF NS GSNAP+TP+KSV + FR N P+YMASTQSFKAK RS SAPKQRPE G +K+LSL++MMESRSSLSGV+MQRSCSQVQ+ + FKNA++GKLD+S++ +
Sbjct: 17 MGRATRWLKGLFGLKNSKD---YSNSSDRRDQKKCSSGHSGRDASAALCHNPTTIPPNISPAEAAWLRS-YYNETEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFGGGRERWAAVKIQTVFRGYLARKALRALKGLVKIQALVRGYLVRKQATATLHSMQALIRAQATIRSQKARGLINHDANRFD--IRARKSMERFDDTRSEHTVSFHSRRLSASLDTAINIDESPKIVEVDTGRPKSRSRRTNTSVSDFSDDPPYQTLSSPLPSRVPARLSLPDSRHCQETDWGLTGDECRFSTAQSTPRFINSCGSNAPVTPAKSVCAENLFRHYGNFPNYMASTQSFKAKLRSHSAPKQRPEP--GPKKRLSLNEMMESRSSLSGVRMQRSCSQVQEAINFKNAVLGKLDRSSEFGR 434
BLAST of XM_017365585.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: D7TBF5 (DUF4005 domain-containing protein {ECO:0000259|Pfam:PF13178})
HSP 1 Score: 523.857 bits (1348), Expect = 0.000e+0
Identity = 293/428 (68.46%), Postives = 346/428 (80.84%), Query Frame = 0
Match: D7TBF5 (DUF4005 domain-containing protein {ECO:0000259|Pfam:PF13178})
HSP 1 Score: 523.857 bits (1348), Expect = 0.000e+0
Identity = 293/428 (68.46%), Postives = 346/428 (80.84%), Query Frame = 0
Query: 1 MGKATRWLKGLFGMKKDKDPAENSTSGDRKNKNGQNVGHSGRGSTGLLHNHATIPPNITPAEVSWLKSNFFNDSDSEQTKHAIAVAAATAAAADAAVAAAQAAAEVVRLTS--RANMLGGGRERTAAIKIQSLFRGYLSRKALRALRGLVKLQALVRGFLVRKQATATLHSMQALIRAQATVRAQRGSAFIRKDSERFQSLFRARKSI-KCDETRSEHATSVHSRRLSGTFD---NTIDESPKIVEVDTGRPKSRSRRSNTWVSDCIDDPHSQTLSSPLPCR----VPSRIWIPDCRNCQESDWGLTGDECRFSTAQSTPRFANSAGSNAPLTPSKSVFLDGFFRQCTNSPSYMASTQSFKAKSRSQSAPKQRPEAGQGSRKKLSLHDMMESRSSLSGVKMQRSCSQVQDVVTFKNAIMGKLDKSADL 418
MG+ATRW KGLFG+K+DK+ +NS GDRK+K+ + GHSGR S GL HN TIPPNI+ AE +WL+S ++ D+++EQ KHAIAVAAATAAAADAAVAAAQAA VVRLTS R M GGGRER A+KIQ++FRGYL+RKALRAL+GLVKLQALVRG+LVRKQATATLH MQALIRAQATVRAQ+ I + +RF+ + RKS+ + DE+RSEH S+HSRRLS + D N ID SPKIVEVDTGRPKSRSRR+NT VSD DD H QTLSSPLPCR VP R+ PD RN Q+SDWGLTGDECRFSTAQSTPRF NS SN P+TP+K+V D FFRQ TN P+YMA+TQSFKAK RS SAPKQRPE G +K+LSL++MMESRSSLSGVKMQRSCS+VQ+ + FKNA+MGKL++ +++
Sbjct: 1 MGRATRWFKGLFGLKRDKEHKDNSNPGDRKDKSRWSSGHSGRDSVGLCHNPTTIPPNISAAEAAWLRS-YYTDTENEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFGGGRERWGAVKIQTVFRGYLARKALRALKGLVKLQALVRGYLVRKQATATLHGMQALIRAQATVRAQKARELI-SNEKRFE--IQTRKSMERFDESRSEHTASIHSRRLSASLDTTFNAIDGSPKIVEVDTGRPKSRSRRTNTSVSDSGDDQHYQTLSSPLPCRTPIPVPVRLSTPDHRNYQDSDWGLTGDECRFSTAQSTPRFMNSERSNVPITPAKTVCADSFFRQYTNFPNYMANTQSFKAKLRSHSAPKQRPEP--GPKKRLSLNEMMESRSSLSGVKMQRSCSRVQEAINFKNAVMGKLERPSEI 422
BLAST of XM_017365585.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438DS39 ((Protein IQ-DOMAIN 31 {ECO:0000313|EMBL:RVW38299.1}))
HSP 1 Score: 523.857 bits (1348), Expect = 0.000e+0
Identity = 293/428 (68.46%), Postives = 346/428 (80.84%), Query Frame = 0
Match: A0A438DS39 ((Protein IQ-DOMAIN 31 {ECO:0000313|EMBL:RVW38299.1}))
HSP 1 Score: 523.857 bits (1348), Expect = 0.000e+0
Identity = 293/428 (68.46%), Postives = 346/428 (80.84%), Query Frame = 0
Query: 1 MGKATRWLKGLFGMKKDKDPAENSTSGDRKNKNGQNVGHSGRGSTGLLHNHATIPPNITPAEVSWLKSNFFNDSDSEQTKHAIAVAAATAAAADAAVAAAQAAAEVVRLTS--RANMLGGGRERTAAIKIQSLFRGYLSRKALRALRGLVKLQALVRGFLVRKQATATLHSMQALIRAQATVRAQRGSAFIRKDSERFQSLFRARKSI-KCDETRSEHATSVHSRRLSGTFD---NTIDESPKIVEVDTGRPKSRSRRSNTWVSDCIDDPHSQTLSSPLPCR----VPSRIWIPDCRNCQESDWGLTGDECRFSTAQSTPRFANSAGSNAPLTPSKSVFLDGFFRQCTNSPSYMASTQSFKAKSRSQSAPKQRPEAGQGSRKKLSLHDMMESRSSLSGVKMQRSCSQVQDVVTFKNAIMGKLDKSADL 418
MG+ATRW KGLFG+K+DK+ +NS GDRK+K+ + GHSGR S GL HN TIPPNI+ AE +WL+S ++ D+++EQ KHAIAVAAATAAAADAAVAAAQAA VVRLTS R M GGGRER A+KIQ++FRGYL+RKALRAL+GLVKLQALVRG+LVRKQATATLH MQALIRAQATVRAQ+ I + +RF+ + RKS+ + DE+RSEH S+HSRRLS + D N ID SPKIVEVDTGRPKSRSRR+NT VSD DD H QTLSSPLPCR VP R+ PD RN Q+SDWGLTGDECRFSTAQSTPRF NS SN P+TP+K+V D FFRQ TN P+YMA+TQSFKAK RS SAPKQRPE G +K+LSL++MMESRSSLSGVKMQRSCS+VQ+ + FKNA+MGKL++ +++
Sbjct: 1 MGRATRWFKGLFGLKRDKEHKDNSNPGDRKDKSRWSSGHSGRDSVGLCHNPTTIPPNISAAEAAWLRS-YYTDTENEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFGGGRERWGAVKIQTVFRGYLARKALRALKGLVKLQALVRGYLVRKQATATLHGMQALIRAQATVRAQKARELI-SNEKRFE--IQTRKSMERFDESRSEHTASIHSRRLSASLDTTFNAIDGSPKIVEVDTGRPKSRSRRTNTSVSDSGDDQHYQTLSSPLPCRTPIPVPVRLSTPDHRNYQDSDWGLTGDECRFSTAQSTPRFMNSERSNVPITPAKTVCADSFFRQYTNFPNYMANTQSFKAKLRSHSAPKQRPEP--GPKKRLSLNEMMESRSSLSGVKMQRSCSRVQEAINFKNAVMGKLERPSEI 422
BLAST of XM_017365585.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J6H5T2 (DUF4005 domain-containing protein {ECO:0000259|Pfam:PF13178})
HSP 1 Score: 518.079 bits (1333), Expect = 0.000e+0
Identity = 292/429 (68.07%), Postives = 344/429 (80.19%), Query Frame = 0
Match: A0A7J6H5T2 (DUF4005 domain-containing protein {ECO:0000259|Pfam:PF13178})
HSP 1 Score: 518.079 bits (1333), Expect = 0.000e+0
Identity = 292/429 (68.07%), Postives = 344/429 (80.19%), Query Frame = 0
Query: 1 MGKATRWLKGLFGMKKDKDPAENSTSGDRKNKNGQNVGHSGRG-STGLLHNHATIPPNITPAEVSWLKSNFFNDSDSEQTKHAIAVAAATAAAADAAVAAAQAAAEVVRLTS--RANMLGGGRERTAAIKIQSLFRGYLSRKALRALRGLVKLQALVRGFLVRKQATATLHSMQALIRAQATVRAQRGSAFIRKDS--ERFQSLFRARKSI-KCDETRSEHATSVHSRRLSGTFDN---TIDESPKIVEVDTGRPKSRSRRSNTWVSDCIDDPHSQTLSSPLPCRVPSRIWIPDCRNCQESDWGLTGDECRFSTAQSTPRFANSAGSNAPLTPSKSVFLDGFFRQCTNSPSYMASTQSFKAKSRSQSAPKQRPEAGQGSRKKLSLHDMMESRSSLSGVKMQRSCSQVQDVVTFKNAIMGKLDKSADLSK 420
MGKA RWLKGLFGMKK+KD NS SGDRK+K V SG+ S GL HN ATIPPN++ AE SWL+S ++ND++ EQ KHAIAVAAATAAAADAAVAAAQAA VVRLTS R M G E+ A +KIQ++FRGYL+RKALRAL+GLVKLQALVRG+LVRKQATATLH MQALIRAQATVR+Q+ FI + RF + RARKS+ + D+++S+H +HSRRLS + D TIDESPKIVEVDTGRPKSRSRR+NT VSD DDP Q LSSPLPCR+P+RI IPDCRNCQES+WG TGDECRFSTAQSTPRF NSA SNAP TP+KSV D +FR N P+YMA+T+SFKAK RS SAPKQRPE G +K+LSL+++MESR+SLSGV+MQRSCSQVQD ++FKN +MGKLD+ +D+ +
Sbjct: 1 MGKAMRWLKGLFGMKKEKDYKPNSNSGDRKDKT---VFSSGKEYSDGLCHNPATIPPNLSSAEASWLRS-YYNDTEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFQGSHEKWAVVKIQTVFRGYLARKALRALKGLVKLQALVRGYLVRKQATATLHGMQALIRAQATVRSQKTRGFIFNNETISRFDN--RARKSMERFDDSKSDHIAPIHSRRLSASLDTSFTTIDESPKIVEVDTGRPKSRSRRTNTSVSDFGDDPSCQALSSPLPCRIPTRISIPDCRNCQESEWGFTGDECRFSTAQSTPRFLNSAASNAPTTPAKSVCADNYFRGYGNYPNYMANTKSFKAKLRSYSAPKQRPEP--GPKKRLSLNELMESRNSLSGVRMQRSCSQVQDAISFKNTVMGKLDRCSDVGR 421
BLAST of XM_017365585.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J0ZQ82 ((protein IQ-DOMAIN 14-like {ECO:0000313|RefSeq:XP_021276774.1, ECO:0000313|RefSeq:XP_021276775.1}))
HSP 1 Score: 516.538 bits (1329), Expect = 1.066e-180
Identity = 289/426 (67.84%), Postives = 345/426 (80.99%), Query Frame = 0
Match: A0A6J0ZQ82 ((protein IQ-DOMAIN 14-like {ECO:0000313|RefSeq:XP_021276774.1, ECO:0000313|RefSeq:XP_021276775.1}))
HSP 1 Score: 516.538 bits (1329), Expect = 1.066e-180
Identity = 289/426 (67.84%), Postives = 345/426 (80.99%), Query Frame = 0
Query: 1 MGKATRWLKGLFGMKKDKDPAENSTSGDRKNKNGQNVGHSGR-GSTGLLHNHATIPPNITPAEVSWLKSNFFNDSDSEQTKHAIAVAAATAAAADAAVAAAQAAAEVVRLTS--RANMLGGGRERTAAIKIQSLFRGYLSRKALRALRGLVKLQALVRGFLVRKQATATLHSMQALIRAQATVRAQRGSAFIRKDSERFQSLFRARKSI-KCDETRSEHATSVHSRRLSGTFDN--TIDESPKIVEVDTGRPKSRSRRSNTWVSDCIDDPHSQTLSSPLPCRVPSRIWIPDCRNCQESDWGLTGDECRFSTAQSTPRFANSAGSNAPLTPSKSVFLDGFFRQCTNSPSYMASTQSFKAKSRSQSAPKQRPEAGQGSRKKLSLHDMMESRSSLSGVKMQRSCSQVQDVVTFKNAIMGKLDKSADLSK 420
MG+ATRWLKGLFG+K KD S S DR++K ++GHSGR ST L HN TIPPNI+PAE +WL+S ++N+++ EQ KHAIAVAAATAAAADAAVAAAQAA VVRLTS R M GGG ER AA+KIQ++FRGYL+RKALRAL+GLVK+QALVRG+LVRKQATATL SMQALIRAQAT+R+Q+ I D+ RF RARKS+ + D+TRSEH S+HSRRLS + D +IDESPKIVEVDTGRPKSRSRR+NT VSD DDP QTLSSPLP R P+R+ +PD R+ QE+DWGLTGDECRFSTAQSTPRF NS GSNAP+TP+KSV + FR N P+YMA+TQSFKAK RS SAPKQRPE G +K+LSL++M+ESRSSLSGV+MQRSCSQVQ+ + FKNA++GKLD+S++ +
Sbjct: 1 MGRATRWLKGLFGIKNRKD---YSNSSDRRDKKKCSIGHSGRDSSTALCHNPTTIPPNISPAEAAWLRS-YYNETEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFGGGHERWAAVKIQTVFRGYLARKALRALKGLVKIQALVRGYLVRKQATATLRSMQALIRAQATIRSQKARGLINHDANRFD--IRARKSMERFDDTRSEHTVSIHSRRLSASLDTAISIDESPKIVEVDTGRPKSRSRRTNTSVSDFSDDPPYQTLSSPLPSRAPARLSLPDSRHFQETDWGLTGDECRFSTAQSTPRFINSCGSNAPVTPAKSVCAENHFRHYGNFPNYMANTQSFKAKLRSHSAPKQRPEP--GPKKRLSLNEMLESRSSLSGVRMQRSCSQVQEAINFKNAVIGKLDRSSEFGR 418
BLAST of XM_017365585.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1Q3CVT4 ((IQ domain-containing protein/DUF4005 domain-containing protein {ECO:0000313|EMBL:GAV84340.1}))
HSP 1 Score: 516.153 bits (1328), Expect = 1.781e-180
Identity = 292/425 (68.71%), Postives = 339/425 (79.76%), Query Frame = 0
Match: A0A1Q3CVT4 ((IQ domain-containing protein/DUF4005 domain-containing protein {ECO:0000313|EMBL:GAV84340.1}))
HSP 1 Score: 516.153 bits (1328), Expect = 1.781e-180
Identity = 292/425 (68.71%), Postives = 339/425 (79.76%), Query Frame = 0
Query: 1 MGKATRWLKGLFGMKKDKDPAENSTSGDRKNKNGQNVGHSGRGSTGLL-HNHATIPPNITPAEVSWLKSNFFNDSDSEQTKHAIAVAAATAAAADAAVAAAQAAAEVVRLTS--RANMLGGGRERTAAIKIQSLFRGYLSRKALRALRGLVKLQALVRGFLVRKQATATLHSMQALIRAQATVRAQRGSAFIRKDSERFQSLFRARKSI-KCDETRSEHATSVHSRRLSGTFD---NTIDESPKIVEVDTGRPKSRSRRSNTWVSDCIDDPHSQTLSSPLPCRVPSRIWIPDCRNCQESDWGLTGDECRFSTAQSTPRFANSAGSNAPLTPSKSVFLDGFFRQCTNSPSYMASTQSFKAKSRSQSAPKQRPEAGQGSRKKLSLHDMMESRSSLSGVKMQRSCSQVQDVVTFKNAIMGKLDKSADL 418
MG+ATRWLKGLFG+K +K ENS SGD+K+K GHSGR G L HN TIPPNI+ AE +WL+S +FND++ EQ KHAIAVAAATAAAADAAVAAAQAA VVRLTS R M GG ER AA+KIQ+ F+GYL+RKALRAL+GLVKLQALVRG+LVRKQATAT HSMQALIRAQAT+R QR + R++ RAR S+ + DETRSEH S+HSRRLS + D NTIDESPKIVEVDTGRPK RSRR+NT VSD DDP QTLSSPLP R+P+R+ IPDCRN Q+ +WGLTGDECRFSTA STPRF NS+GSNAP+TP+KS D FFRQ N P+YMA+TQSFKAK RS SAPKQRPE G +KK+SL +MMESRSSLSG++MQRSCSQVQ+ + FKNA++GKLD+S +L
Sbjct: 1 MGRATRWLKGLFGIKTNK---ENSNSGDKKDKQRCGFGHSGRDQKGFLCHNPTTIPPNISAAEATWLRS-YFNDTEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFGGACERWAALKIQAAFKGYLARKALRALKGLVKLQALVRGYLVRKQATATFHSMQALIRAQATIRFQRIRGLT-NNHNRYE--IRARNSMERVDETRSEHTASIHSRRLSASLDSTINTIDESPKIVEVDTGRPKLRSRRTNTSVSDYSDDPFYQTLSSPLPSRIPARLSIPDCRNFQDCEWGLTGDECRFSTAHSTPRFVNSSGSNAPVTPAKSACADNFFRQYGNFPNYMANTQSFKAKLRSHSAPKQRPEP--GPKKKISLDEMMESRSSLSGIRMQRSCSQVQETINFKNAVIGKLDRSIEL 416
BLAST of XM_017365585.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J6HUK5 (DUF4005 domain-containing protein {ECO:0000259|Pfam:PF13178})
HSP 1 Score: 515.768 bits (1327), Expect = 2.650e-180
Identity = 292/433 (67.44%), Postives = 344/433 (79.45%), Query Frame = 0
Match: A0A7J6HUK5 (DUF4005 domain-containing protein {ECO:0000259|Pfam:PF13178})
HSP 1 Score: 515.768 bits (1327), Expect = 2.650e-180
Identity = 292/433 (67.44%), Postives = 344/433 (79.45%), Query Frame = 0
Query: 1 MGKATRWLKGLFGMKKDKDPAENSTSGDRKNKNGQNVGHSGRG-STGLLHNHATIPPNITPAEVSWLKSNFFNDSDSEQTKHAIAVAAATAAAADAAVAAAQAAAEVVRLTS--RANMLGGGRERTAAIKIQSLFRGYLSRKALRALRGLVKLQALVRGFLVRKQATATLHSMQALIRAQATVRAQRGSAFIRKDS--ERFQSLFRARKSI-----KCDETRSEHATSVHSRRLSGTFDN---TIDESPKIVEVDTGRPKSRSRRSNTWVSDCIDDPHSQTLSSPLPCRVPSRIWIPDCRNCQESDWGLTGDECRFSTAQSTPRFANSAGSNAPLTPSKSVFLDGFFRQCTNSPSYMASTQSFKAKSRSQSAPKQRPEAGQGSRKKLSLHDMMESRSSLSGVKMQRSCSQVQDVVTFKNAIMGKLDKSADLSK 420
MGKA RWLKGLFGMKK+KD NS SGDRK+K V SG+ S GL HN ATIPPN++ AE SWL+S ++ND++ EQ KHAIAVAAATAAAADAAVAAAQAA VVRLTS R M G E+ A +KIQ++FRGYL+RKALRAL+GLVKLQALVRG+LVRKQATATLH MQALIRAQATVR+Q+ FI + RF + RARKS+ + D+++S+H +HSRRLS + D TIDESPKIVEVDTGRPKSRSRR+NT VSD DDP Q LSSPLPCR+P+RI IPDCRNCQES+WG TGDECRFSTAQSTPRF NSA SNAP TP+KSV D +FR N P+YMA+T+SFKAK RS SAPKQRPE G +K+LSL+++MESR+SLSGV+MQRSCSQVQD ++FKN +MGKLD+ +D+ +
Sbjct: 1 MGKAMRWLKGLFGMKKEKDYKPNSNSGDRKDKT---VFSSGKEYSDGLCHNPATIPPNLSSAEASWLRS-YYNDTEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFQGSHEKWAVVKIQTVFRGYLARKALRALKGLVKLQALVRGYLVRKQATATLHGMQALIRAQATVRSQKTRGFIFNNETISRFDN--RARKSMSNLQERFDDSKSDHIAPIHSRRLSASLDTSFTTIDESPKIVEVDTGRPKSRSRRTNTSVSDFGDDPSCQALSSPLPCRIPTRISIPDCRNCQESEWGFTGDECRFSTAQSTPRFLNSAASNAPTTPAKSVCADNYFRGYGNYPNYMANTKSFKAKLRSYSAPKQRPEP--GPKKRLSLNELMESRNSLSGVRMQRSCSQVQDAISFKNTVMGKLDRCSDVGR 425
BLAST of XM_017365585.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438IHY5 ((Protein IQ-domain 31 {ECO:0000313|EMBL:RVW96314.1}))
HSP 1 Score: 512.686 bits (1319), Expect = 1.156e-178
Identity = 288/427 (67.45%), Postives = 343/427 (80.33%), Query Frame = 0
Match: A0A438IHY5 ((Protein IQ-domain 31 {ECO:0000313|EMBL:RVW96314.1}))
HSP 1 Score: 512.686 bits (1319), Expect = 1.156e-178
Identity = 288/427 (67.45%), Postives = 343/427 (80.33%), Query Frame = 0
Query: 2 GKATRWLKGLFGMKKDKDPAENSTSGDRKNKNGQNVGHSGRGSTGLLHNHATIPPNITPAEVSWLKSNFFNDSDSEQTKHAIAVAAATAAAADAAVAAAQAAAEVVRLTS--RANMLGGGRERTAAIKIQSLFRGYLSRKALRALRGLVKLQALVRGFLVRKQATATLHSMQALIRAQATVRAQRGSAFIRKDSERFQSLFRARKSI-KCDETRSEHATSVHSRRLSGTFD---NTIDESPKIVEVDTGRPKSRSRRSNTWVSDCIDDPHSQTLSSPLPCR----VPSRIWIPDCRNCQESDWGLTGDECRFSTAQSTPRFANSAGSNAPLTPSKSVFLDGFFRQCTNSPSYMASTQSFKAKSRSQSAPKQRPEAGQGSRKKLSLHDMMESRSSLSGVKMQRSCSQVQDVVTFKNAIMGKLDKSADL 418
GK + ++GLFG+K+DK+ +NS GDRK+K+ + GHSGR S GL HN TIPPNI+ AE +WL+S ++ D+++EQ KHAIAVAAATAAAADAAVAAAQAA VVRLTS R M GGGRER A+KIQ++FRGYL+RKALRAL+GLVKLQALVRG+LVRKQATATLH MQALIRAQATVRAQ+ I + +RF+ + RKS+ + DE+RSEH S+HSRRLS + D N ID SPKIVEVDTGRPKSRSRR+NT VSD DD H QTLSSPLPCR VP R+ PD RN Q+SDWGLTGDECRFSTAQSTPRF NS SN P+TP+K+V D FFRQ TN P+YMA+TQSFKAK RS SAPKQRPE G +K+LSL++MMESRSSLSGVKMQRSCS+VQ+ + FKNA+MGKL++ +++
Sbjct: 24 GKGNKVVQGLFGLKRDKEHKDNSNPGDRKDKSRWSSGHSGRDSVGLCHNPTTIPPNISAAEAAWLRS-YYTDTENEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFGGGRERWGAVKIQTVFRGYLARKALRALKGLVKLQALVRGYLVRKQATATLHGMQALIRAQATVRAQKARELI-SNEKRFE--IQTRKSMERFDESRSEHTASIHSRRLSASLDTTFNAIDGSPKIVEVDTGRPKSRSRRTNTSVSDSGDDQHYQTLSSPLPCRTPIPVPVRLSTPDHRNYQDSDWGLTGDECRFSTAQSTPRFMNSERSNVPITPAKTVCADSFFRQYTNFPNYMANTQSFKAKLRSHSAPKQRPEP--GPKKRLSLNEMMESRSSLSGVKMQRSCSRVQEAINFKNAVMGKLERPSEI 444
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7B404 | E-Value: 0.000e+0, PID: 71.70 | DUF4005 domain-containing protein {ECO:0000259|Pfa... [more] |
| A0A5C7HXB7 | E-Value: 0.000e+0, PID: 69.63 | DUF4005 domain-containing protein {ECO:0000259|Pfa... [more] |
| A0A061GU39 | E-Value: 0.000e+0, PID: 68.78 | (Iq-domain 31 {ECO:0000313|EMBL:EOY30634.1})[more] |
| D7TBF5 | E-Value: 0.000e+0, PID: 68.46 | DUF4005 domain-containing protein {ECO:0000259|Pfa... [more] |
| A0A438DS39 | E-Value: 0.000e+0, PID: 68.46 | (Protein IQ-DOMAIN 31 {ECO:0000313|EMBL:RVW38299.1... [more] |
| A0A7J6H5T2 | E-Value: 0.000e+0, PID: 68.07 | DUF4005 domain-containing protein {ECO:0000259|Pfa... [more] |
| A0A6J0ZQ82 | E-Value: 1.066e-180, PID: 67.84 | (protein IQ-DOMAIN 14-like {ECO:0000313|RefSeq:XP_... [more] |
| A0A1Q3CVT4 | E-Value: 1.781e-180, PID: 68.71 | (IQ domain-containing protein/DUF4005 domain-conta... [more] |
| A0A7J6HUK5 | E-Value: 2.650e-180, PID: 67.44 | DUF4005 domain-containing protein {ECO:0000259|Pfa... [more] |
| A0A438IHY5 | E-Value: 1.156e-178, PID: 67.45 | (Protein IQ-domain 31 {ECO:0000313|EMBL:RVW96314.1... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |