MKQLRLEDPLLVTSGNSSTTRWLRALCFFLALTAITFAGLTLSGYLEFGI
VRGGGNYGNEGLSFGNEEVVKSDKAVVAADDARCSETGVSVLGQGGHAVD
AAVATALCLGVVNAMASGIGGGGFMVVRSSATSRTEAINMRETAPLASSQ
TMYDNNPETKYKGALSMGVPGELAGLYEAWSRHGRLPWKTLFQPAIKLAR
DGFVIAPYLGNYIADYSDSIMRDPGLRQVYAPGGKLLKAGEKCYNVELGH
SLEAIGELGPKAFYDGSIGERFVQDVRKAGGILTMEDLRSYRVDVTEAVS
VNAMGYTILGMPSPSSGTLGISLVLNILESYGSTYAAMGSLGLHRLIEAL
KHMFAVRMDLGDPNFVNITKTVADMLSPAFAKRIQQRIFDNTTFPSEYYL
HRWSQLRDHGTSHFCIVDADRNAVSLTTTVNYPFGAKVLSPSTGIVLNNE
MDDFSTPAEVSPDQLPPAPANFIEPKKRPLSSMTPVVVLRDNQLVGVIGG
SGGLYIIPAILQVFLNHFALGMEPLSAVQGPRVYHKLIPNVVLYEDWTCL
DGEHIEVVPEVRRFLEERGHELEAKSGGAISQLIVQDLRNAIPMDRENGK
GTSDQVLCGILTGVSDPRKDGKPAAMR
| Relationships |
|---|
| The polypeptide, XM_017368067.1, derives from mRNA, XM_017368067.1. |

Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
Match: A0A5B7AM93 ((Uncharacterized protein {ECO:0000313|EMBL:MPA57799.1}))
HSP 1 Score: 943.725 bits (2438), Expect = 0.000e+0
Identity = 444/628 (70.70%), Postives = 536/628 (85.35%), Query Frame = 0
Query: 1 MKQLRLEDPLLVTSGNSSTTRWLRALCFFLALTAITFAGLTLSGYLEFGIVRGGGNYGNEGLSFGNEEVVKSDKAVVAADDARCSETGVSVLGQGGHAVDAAVATALCLGVVNAMASGIGGGGFMVVRSSATSRTEAINMRETAPLASSQTMYDNNPETKYKGALSMGVPGELAGLYEAWSRHGRLPWKTLFQPAIKLARDGFVIAPYLGNYIADYSDSIMRDPGLRQVYAPGGKLLKAGEKCYNVELGHSLEAIGELGPKAFYDGSIGERFVQDVRKAGGILTMEDLRSYRVDVTEAVSVNAMGYTILGMPSPSSGTLGISLVLNILESYGSTYAAMGSLGLHRLIEALKHMFAVRMDLGDPNFVNITKTVADMLSPAFAKRIQQRIFDNTTFPSEYYLHRWSQLRDHGTSHFCIVDADRNAVSLTTTVNYPFGAKVLSPSTGIVLNNEMDDFSTPAEVSPDQLPPAPANFIEPKKRPLSSMTPVVVLRDNQLVGVIGGSGGLYIIPAILQVFLNHFALGMEPLSAVQGPRVYHKLIPNVVLYEDWTCLDGEHIEVVPEVRRFLEERGHELEAKSGGAISQLIVQDLRNAIPMDR--ENGKGTSDQVLCGILTGVSDPRKDGKPAAM 626
M Q +E PLL + G ++ RW RAL F LA I F GLT+ G F ++R G YG + + ++V+S++AVVAADD RCSE G S+L GGHA+DAAVATALC+GVVN MASGIGGG F++VRSSATS+T+A +MRETAPLA+SQ MY NNPE K+ GALSMGVPGELAGL+EAW ++GRLPW+TLFQPAIKLA+DGFV+APYLG+ IA+ + IM DPGL+QV+AP GKLL+AG+ CYNVELG SLEA+ E GP+AFY+G++GE+ V+DVR+AGGILTMEDLR+Y VDVT+A++VNAMGYTILGMP PSSGTLG+SLVLNIL+SYG++ A GSLGLHRLIE LKHMFAVRM+LGDP+FVNI+KT++DMLSP++AK++QQ+IFDNTTFP EYYL+RWSQLRDHGTSHFCIVDADRNAVS+TTTVNY FGA VLSPSTGI+LNNEM DFSTP E+SPD+LPPAP NFI+P KRPLSSMTP++VL+DNQL GV+GGSGG+YIIPA++QVFLNHF +GMEPL+AVQ PRVYHKLIPNVVLYE+WT LDG+HIE+ E ++FLEERGH+LE K GGAI QL+VQ+L+N PMD+ +N K D + G LT VSDPRKDG+PAA+
Sbjct: 2 MGQQSIEAPLLGSDGQTNKKRWSRALLFLLAFITIIFVGLTVGGNSSFWLLRSGNKYGTR-IQIEDADIVESEQAVVAADDGRCSEIGASILRHGGHAIDAAVATALCVGVVNPMASGIGGGSFLIVRSSATSQTQAYDMRETAPLAASQNMYANNPEAKFVGALSMGVPGELAGLHEAWLKYGRLPWRTLFQPAIKLAKDGFVVAPYLGSSIANCAKMIMTDPGLQQVFAPNGKLLQAGDTCYNVELGRSLEAVAEQGPQAFYNGTVGEKLVKDVREAGGILTMEDLRNYSVDVTDAMAVNAMGYTILGMPPPSSGTLGLSLVLNILDSYGNSNAVKGSLGLHRLIETLKHMFAVRMNLGDPDFVNISKTISDMLSPSYAKKLQQKIFDNTTFPPEYYLNRWSQLRDHGTSHFCIVDADRNAVSMTTTVNYGFGAGVLSPSTGIILNNEMGDFSTPTEISPDKLPPAPTNFIKPNKRPLSSMTPIIVLKDNQLAGVLGGSGGMYIIPAVIQVFLNHFIIGMEPLAAVQSPRVYHKLIPNVVLYENWTVLDGDHIELPEERKQFLEERGHQLEPKEGGAICQLVVQNLQN--PMDKGWKNRKVPKDLIFRGTLTAVSDPRKDGRPAAI 626
Match: A0A5B7ALX6 ((Uncharacterized protein {ECO:0000313|EMBL:MPA57802.1}))
HSP 1 Score: 941.414 bits (2432), Expect = 0.000e+0
Identity = 449/628 (71.50%), Postives = 535/628 (85.19%), Query Frame = 0
Query: 1 MKQLRLEDPLLVTSGNSSTT-RWLRALCFFLAL-TAITFAGLTLSGYLEFGIVRGGGNYGNEGLSFGNEEVVKSDKAVVAADDARCSETGVSVLGQGGHAVDAAVATALCLGVVNAMASGIGGGGFMVVRSSATSRTEAINMRETAPLASSQTMYDNNPETKYKGALSMGVPGELAGLYEAWSRHGRLPWKTLFQPAIKLARDGFVIAPYLGNYIADYSDSIMRDPGLRQVYAPGGKLLKAGEKCYNVELGHSLEAIGELGPKAFYDGSIGERFVQDVRKAGGILTMEDLRSYRVDVTEAVSVNAMGYTILGMPSPSSGTLGISLVLNILESYGSTYAAMGSLGLHRLIEALKHMFAVRMDLGDPNFVNITKTVADMLSPAFAKRIQQRIFDNTTFPSEYYLHRWSQLRDHGTSHFCIVDADRNAVSLTTTVNYPFGAKVLSPSTGIVLNNEMDDFSTPAEVSPDQLPPAPANFIEPKKRPLSSMTPVVVLRDNQLVGVIGGSGGLYIIPAILQVFLNHFALGMEPLSAVQGPRVYHKLIPNVVLYEDWTCLDGEHIEVVPEVRRFLEERGHELEAKSGGAISQLIVQDLRNAIPMDRENGKGTSDQVLCGILTGVSDPRKDGKPAAM 626
M Q +E PLL + G ++ RW RAL F L ITF GLT+ G L F ++RG YG + + ++V+S++AVVAADD RCSE G S+L QGGHAVDAAVATALCLGV+N +ASGIGGG FM+VRSS+TS T A +MRET+PLA+SQ MY+NNPE K+ GALSMGVPGELAGL+EAW +HGRLPW+TLFQPAIKLA+DGFV+APYLG+ IA + IM DPGLRQV+AP GKLL+AG+ CYNVELGHSLEA+ E GP+AFY+G++GE+ V+DVR+AGGILTMEDLR+YRVDVT A++VNAMGYTILGMP PSSGTLGISLVLNIL+SYGS+ A G LGLHRLIEALKHM AVRM+LGDPNFVNI+KT++DMLSP+FAK++QQ+IFD TTFP EYY++RWSQLRDHGTSHFCIVD+DRNAVS+TTTVNYPFGA VLSP+TGI+LNNEMDDFSTP E+SPDQLPPAP NFI+P KRPLSSMTP++VL+DNQL GV+GGSGGLYIIPA++QVFLNH+ LGMEPL+AVQ PRVYH+LIPNVVLYE+WT LDG+HIE+ E FLEERGH+L A+ GGAI QL+VQ L+N I + R+NG+ + +QV G LT VSDPRKDG+PA +
Sbjct: 2 MGQQSIEAPLLGSDGQAANKKRWSRALLFLLLAFVTITFFGLTVGGNLSFWLLRGENKYGTR-IQIEDADIVESEQAVVAADDGRCSEIGASILRQGGHAVDAAVATALCLGVINPVASGIGGGSFMIVRSSSTSETLAFDMRETSPLAASQNMYENNPEAKFVGALSMGVPGELAGLHEAWLKHGRLPWRTLFQPAIKLAKDGFVVAPYLGSSIAKCAKIIMTDPGLRQVFAPNGKLLQAGDTCYNVELGHSLEAVAEQGPQAFYNGTVGEKLVKDVREAGGILTMEDLRNYRVDVTSAMAVNAMGYTILGMPPPSSGTLGISLVLNILDSYGSSSAVKGPLGLHRLIEALKHMLAVRMNLGDPNFVNISKTISDMLSPSFAKKLQQKIFDTTTFPPEYYMNRWSQLRDHGTSHFCIVDSDRNAVSMTTTVNYPFGAGVLSPATGIILNNEMDDFSTPTEISPDQLPPAPNNFIKPNKRPLSSMTPIIVLKDNQLTGVLGGSGGLYIIPAVIQVFLNHYILGMEPLAAVQSPRVYHQLIPNVVLYENWTVLDGDHIELPEEREHFLEERGHQLGAREGGAICQLVVQTLQNPIDIGRKNGEVSKEQVFHGTLTAVSDPRKDGRPATI 628
Match: A0A5J5AYK4 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8534906.1}))
HSP 1 Score: 938.717 bits (2425), Expect = 0.000e+0
Identity = 442/626 (70.61%), Postives = 527/626 (84.19%), Query Frame = 0
Query: 1 MKQLRLEDPLLVTSGNSSTTRWLRALCFFLALTAITFAGLTLSGYLEFGIVRGGGNYGNEGLSFGNEEVVKSDKAVVAADDARCSETGVSVLGQGGHAVDAAVATALCLGVVNAMASGIGGGGFMVVRSSATSRTEAINMRETAPLASSQTMYDNNPETKYKGALSMGVPGELAGLYEAWSRHGRLPWKTLFQPAIKLARDGFVIAPYLGNYIADYSDSIMRDPGLRQVYAPGGKLLKAGEKCYNVELGHSLEAIGELGPKAFYDGSIGERFVQDVRKAGGILTMEDLRSYRVDVTEAVSVNAMGYTILGMPSPSSGTLGISLVLNILESYGSTYAAMGSLGLHRLIEALKHMFAVRMDLGDPNFVNITKTVADMLSPAFAKRIQQRIFDNTTFPSEYYLHRWSQLRDHGTSHFCIVDADRNAVSLTTTVNYPFGAKVLSPSTGIVLNNEMDDFSTPAEVSPDQLPPAPANFIEPKKRPLSSMTPVVVLRDNQLVGVIGGSGGLYIIPAILQVFLNHFALGMEPLSAVQGPRVYHKLIPNVVLYEDWTCLDGEHIEVVPEVRRFLEERGHELEAKSGGAISQLIVQDLRNAIPMDRENGKGTSDQVLCGILTGVSDPRKDGKPAAM 626
M Q +E PLL + G + W RAL FFLA I F GLT+ G F ++RG YG + + ++V+S++AVVAADD RCSE G S+L GGHAVDAAVATALC+GVVN MASGIGGG FM+VRSSATS A +MRETAPLA+SQ MY+NNPE K GALSMGVPGELAGL+EAW ++GRLPW+TLFQPAIKLA+DGFV+APYLG++IA + IM DPGL+QV+AP GKLL+ G+ CYNVELG SLEA+ E G KAFY+G+IGE+ V+DVR+AGGILTMEDLR+YRVDVTEAV+VNAMG+T+LGMP PSSGTLG++LV NI +SYGS A GSLGLHRLIEA+KHMFAVRM+LGDP+FVNI+KT+++MLSP+FAK++QQ+IFDNTTFP EYYLHRW+QLRDHGTSHFCIVDADRNAVS+TTT+NY FGA +LSPSTGI+LNNEMDDFSTP E+SPD+LPPAP NFI+P KRPLSSMTP++VL+DNQL GV+GGSGG+YIIPA+LQVFLNHF GMEPL+AVQ PRVYHKLIPNVVLYE+WT +DG HIE+ E + FLEERGH+LEAK GGAI QL+VQ+L+N+ M +N K D++ G LT VSDPRKDG+PAA+
Sbjct: 1 MGQQSIEAPLLGSDGRGNKKLWSRALLFFLAFITIAFVGLTVGGNSSFWLLRGESKYGTR-IHIEDGDIVESEQAVVAADDGRCSEIGASMLRHGGHAVDAAVATALCVGVVNPMASGIGGGSFMIVRSSATSEARAYDMRETAPLAASQNMYENNPEAKVSGALSMGVPGELAGLHEAWLKYGRLPWRTLFQPAIKLAKDGFVVAPYLGSFIAKCAKMIMTDPGLQQVFAPNGKLLQTGDICYNVELGRSLEAVAEQGLKAFYNGAIGEKLVKDVREAGGILTMEDLRNYRVDVTEAVAVNAMGFTVLGMPPPSSGTLGLALVSNIFDSYGSPNAVKGSLGLHRLIEAMKHMFAVRMNLGDPDFVNISKTISEMLSPSFAKKLQQKIFDNTTFPPEYYLHRWNQLRDHGTSHFCIVDADRNAVSMTTTINYGFGAGILSPSTGIILNNEMDDFSTPTEISPDKLPPAPTNFIKPNKRPLSSMTPIIVLKDNQLAGVLGGSGGIYIIPAVLQVFLNHFIKGMEPLAAVQSPRVYHKLIPNVVLYENWTLIDGNHIELPEERKHFLEERGHQLEAKDGGAICQLVVQNLQNSFDMGLKNRKVPKDRIFHGTLTAVSDPRKDGRPAAI 625
Match: A0A6P6T3W7 ((glutathione hydrolase 3 isoform X1 {ECO:0000313|RefSeq:XP_027073033.1}))
HSP 1 Score: 935.25 bits (2416), Expect = 0.000e+0
Identity = 455/626 (72.68%), Postives = 520/626 (83.07%), Query Frame = 0
Query: 2 KQLRLEDPLLVTSGNSSTTR-WLRALCFFLALTAITFAGLTLSGYLEFGIVRGGGNYGNEGLSFGNEEVVKSDKAVVAADDARCSETGVSVLGQGGHAVDAAVATALCLGVVNAMASGIGGGGFMVVRSSATSRTEAINMRETAPLASSQTMYDNNPETKYKGALSMGVPGELAGLYEAWSRHGRLPWKTLFQPAIKLARDGFVIAPYLGNYIADYSDSIMRDPGLRQVYAPGGKLLKAGEKCYNVELGHSLEAIGELGPKAFYDGSIGERFVQDVRKAGGILTMEDLRSYRVDVTEAVSVNAMGYTILGMPSPSSGTLGISLVLNILESYGSTYAAMGSLGLHRLIEALKHMFAVRMDLGDPNFVNITKTVADMLSPAFAKRIQQRIFDNTTFPSEYYLHRWSQLRDHGTSHFCIVDADRNAVSLTTTVNYPFGAKVLSPSTGIVLNNEMDDFSTPAEVSPDQLPPAPANFIEPKKRPLSSMTPVVVLRDNQLVGVIGGSGGLYIIPAILQVFLNHFALGMEPLSAVQGPRVYHKLIPNVVLYEDWTCLDGEHIEVVPEVRRFLEERGHELEAKSGGAISQLIVQDLRNAIPMDRENGKGTSDQVLCGILTGVSDPRKDGKPAAM 626
+Q LE PLLV SGNS R W L F LAL +T GL L G F +V GN NE L FGN E+V+S +AVVAADD RCSE GVSVL +GGHAVDAAVATALCLGVVN ASGIGGGGFMVV SS TS ++A +MRETAPLA+SQ MYD + KY GALSMGVPGELAGL+EAW + GRLPWKTLFQPAIKLA++GFV+APYLG+Y+A + I+ DPGL+QVYAP GKLLKAGE CYNVELG SLEA+ + GP+AFY+G+IGE+ ++DV+KAGGIL MEDLR+YRVDVT AVSVN MGYTILGMP PSSGTLG+SLVLNIL+SY S+ AA G LGLHRLIEALKHM A+RMDLGDP+FVNI+KT +DMLSP FAK+IQQ IFDNTTFP EYY+HRWSQLRDHGTSHFCIVDADRNAVS+TTTVNYPFGA VLSPSTGIVLNNEM DFS P E+S D+LPPAPANFI P KRPLSSMTP++VL+ NQL GVIGGSGG IIPA++QVF+NHF LGMEPL+AVQ PRVYHKLIPNVVLYE+WT LDG+HIE+ E R FLEERGH+L+ +SGGAI Q IVQ L+ R+ GK +++V+ GILT VSDPRKDG+PAA+
Sbjct: 3 QQHSLEAPLLVESGNSIRKRYWRTVLSFLLALIGLTCVGLILRGNSSFWVVVRDGNEFNERLQFGNTEIVESQQAVVAADDGRCSEIGVSVLAEGGHAVDAAVATALCLGVVNPTASGIGGGGFMVVHSSTTSESQAFDMRETAPLAASQDMYDTDVNAKYNGALSMGVPGELAGLHEAWLKFGRLPWKTLFQPAIKLAKEGFVVAPYLGSYLARKMNIILTDPGLKQVYAPNGKLLKAGEICYNVELGRSLEAVAQQGPEAFYNGTIGEKLIEDVQKAGGILKMEDLRNYRVDVTGAVSVNTMGYTILGMPPPSSGTLGMSLVLNILDSYASSNAAEGPLGLHRLIEALKHMLAIRMDLGDPDFVNISKTASDMLSPEFAKKIQQLIFDNTTFPPEYYMHRWSQLRDHGTSHFCIVDADRNAVSMTTTVNYPFGAGVLSPSTGIVLNNEMGDFSVPTEISSDRLPPAPANFIRPNKRPLSSMTPIIVLKHNQLAGVIGGSGGSDIIPAVVQVFINHFILGMEPLAAVQSPRVYHKLIPNVVLYENWTVLDGDHIELSSENRHFLEERGHQLQGRSGGAICQFIVQTLQRPRDGGRKFGKMANNEVVHGILTAVSDPRKDGRPAAI 628
Match: A0A068U3X4 ((Uncharacterized protein {ECO:0000313|EMBL:CDP03225.1}))
HSP 1 Score: 933.71 bits (2412), Expect = 0.000e+0
Identity = 451/626 (72.04%), Postives = 521/626 (83.23%), Query Frame = 0
Query: 2 KQLRLEDPLLVTSGNSSTTR-WLRALCFFLALTAITFAGLTLSGYLEFGIVRGGGNYGNEGLSFGNEEVVKSDKAVVAADDARCSETGVSVLGQGGHAVDAAVATALCLGVVNAMASGIGGGGFMVVRSSATSRTEAINMRETAPLASSQTMYDNNPETKYKGALSMGVPGELAGLYEAWSRHGRLPWKTLFQPAIKLARDGFVIAPYLGNYIADYSDSIMRDPGLRQVYAPGGKLLKAGEKCYNVELGHSLEAIGELGPKAFYDGSIGERFVQDVRKAGGILTMEDLRSYRVDVTEAVSVNAMGYTILGMPSPSSGTLGISLVLNILESYGSTYAAMGSLGLHRLIEALKHMFAVRMDLGDPNFVNITKTVADMLSPAFAKRIQQRIFDNTTFPSEYYLHRWSQLRDHGTSHFCIVDADRNAVSLTTTVNYPFGAKVLSPSTGIVLNNEMDDFSTPAEVSPDQLPPAPANFIEPKKRPLSSMTPVVVLRDNQLVGVIGGSGGLYIIPAILQVFLNHFALGMEPLSAVQGPRVYHKLIPNVVLYEDWTCLDGEHIEVVPEVRRFLEERGHELEAKSGGAISQLIVQDLRNAIPMDRENGKGTSDQVLCGILTGVSDPRKDGKPAAM 626
+Q LE PLLV SGNS R W L F LAL +T GL L G F +V GN NE L FGN E+V+S +AVVAADD RCSE GVSVL +GGHAVDAAVATALCLGVVN MASGIGGGGFMVVRSS TS +A +MRETAPLA+SQ MY+ + KY GALSMGVPGELAGL+EAW + GRLPWKTLFQPAIKLA++GFV+APYLG+Y+A + I+ DPGL+QVYAP GKLLKAGE CYNVELG SLEA+ + GP+AFY+G+IGE+ ++DV+KAGGIL +EDL++YRVDVT+AVSVN MGYTILGMP PSSGTLG+SLVLNIL+SY S+ AA G LGLHRLIEALKHMFA+RMDLGDP+FVNI+KT +DMLSP FAK++QQ IFDNTTFP EYY+HRWSQL DHGTSHFCIVDADRNAVS+TTTVNYPFGA VLSPSTGIVLNNEM DFS P E+S D+LPPAPANFI P KRPLSSMTP++VL+ NQL GVIGGSGG IIPA++QVF+NHF LGMEPL+AVQ PRVYH+LIPNVVLYE+WT LDG+HIE+ E R FLEERGH+L+ +SGG I Q IVQ L+ R+ GK +++V+ GILT VSDPRKDG+PAA+
Sbjct: 3 QQHSLEAPLLVESGNSIRKRYWRTVLSFLLALIGLTCVGLILRGNSSFWVVVRDGNEFNESLQFGNTEIVESQQAVVAADDGRCSEIGVSVLAKGGHAVDAAVATALCLGVVNPMASGIGGGGFMVVRSSTTSEAQAFDMRETAPLAASQDMYETDVNAKYNGALSMGVPGELAGLHEAWLKFGRLPWKTLFQPAIKLAKEGFVVAPYLGSYLARKKNIILSDPGLKQVYAPNGKLLKAGEICYNVELGRSLEAVAQQGPEAFYNGTIGEKLIEDVQKAGGILKVEDLKNYRVDVTDAVSVNTMGYTILGMPPPSSGTLGMSLVLNILDSYASSNAAEGPLGLHRLIEALKHMFAIRMDLGDPDFVNISKTASDMLSPEFAKKMQQLIFDNTTFPPEYYMHRWSQLTDHGTSHFCIVDADRNAVSMTTTVNYPFGAGVLSPSTGIVLNNEMGDFSVPTEISSDKLPPAPANFIRPNKRPLSSMTPIIVLKHNQLAGVIGGSGGSDIIPAVVQVFINHFILGMEPLAAVQSPRVYHELIPNVVLYENWTVLDGDHIELSNENRHFLEERGHQLQGRSGGGICQFIVQTLQRPRDGGRKFGKTANNEVVHGILTAVSDPRKDGRPAAI 628
Match: A0A834GZ45 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7143280.1}))
HSP 1 Score: 927.161 bits (2395), Expect = 0.000e+0
Identity = 445/629 (70.75%), Postives = 526/629 (83.62%), Query Frame = 0
Query: 1 MKQLRLEDPLLVTSGNSSTTRWLRALCFFLALTAITFAGLTLSGYLEFGIVRGGGNYGNEGLSFGNEEVVKSDKAVVAADDARCSETGVSVLGQGGHAVDAAVATALCLGVVNAMASGIGGGGFMVVRSSATSRTEAINMRETAPLASSQTMYDNNPETKYKGALSMGVPGELAGLYEAWSRHGRLPWKTLFQPAIKLARDGFVIAPYLGNYIADYSDSIMRDPGLRQVYAPGGKLLKAGEKCYNVELGHSLEAIGELGPKAFYDGSIGERFVQDVRKAGGILTMEDLRSYRVDVTEAVSVNAMGYTILGMPSPSSGTLGISLVLNILESYGSTYAAMGSLGLHRLIEALKHMFAVRMDLGDPNFVNITKTVADMLSPAFAKRIQQRIFDNTTFPSEYYLHRWSQLRDHGTSHFCIVDADRNAVSLTTTVNYPFGAKVLSPSTGIVLNNEMDDFSTPAEVSPDQLPPAPANFIEPKKRPLSSMTPVVVLRDNQLVGVIGGSGGLYIIPAILQVFLNHFALGMEPLSAVQGPRVYHKLIPNVVLYEDWTCLDGEHIEVVPEVRRFLEERGHELEAKSGGAISQLIVQDL--RNAIPMDRENGK-GTSDQVLCGILTGVSDPRKDGKPAAM 626
M Q +E PLL +G + RW RAL F L AITF GLTL G + +RGG + +E G E+V+SD+AVVAADD RCSE G S L QGGHAVDAAVATALCLGVVN MASGIGGG FM+VRSS+TS+T+A +MRETAP A+SQ MY+NN KY G LS GVPGELAGL+EAWS++GRLPWKTLFQPAIKLAR+GFV+APYLG+ I+ IM D GLRQV+AP GKLL+AG+ CYNVELGHSLEA+ E GP+AFY+G+I E V+DVR AGGILTMEDLR+Y+VD+T+A++ N+MGYTILGMP PSSGTLG+SLVLNILESYG++ AA GS+GLHRLIEALKHM+AVRM+LGDP+FVNI+ T++DM+SP+FAK++QQ+IFDNTTFP EYY++RWSQLRDHGTSHFCIVDADRNAVS+TTTVNYPFGA +LSPSTGIVLNNEM DFSTP E+SP+ LPPAP NFI P KRPLSSMTP++VL+DNQL GVIGGSGGL IIPA++QVF+NHF LG EPL AVQ PRVYHKLIPNVVLYE+WT +DG+HIE+ E + FLEERGH+L+A+SGGAI QL+VQ+L NA M R++GK DQ+ G LT VSDPRKDG+PAA+
Sbjct: 1 MGQHSIEAPLLGRNGQTHKKRWSRALLFLLGFIAITFIGLTLGGNIRVWKLRGGKKH-DEKTQNGETEIVESDEAVVAADDGRCSEIGASFLRQGGHAVDAAVATALCLGVVNPMASGIGGGAFMLVRSSSTSQTQAYDMRETAPSAASQDMYENNSAAKYVGPLSAGVPGELAGLHEAWSKYGRLPWKTLFQPAIKLAREGFVVAPYLGSSISRNGKLIMADIGLRQVFAPNGKLLQAGDMCYNVELGHSLEAVAEKGPEAFYNGTIAENLVKDVRGAGGILTMEDLRNYKVDITDAIAFNSMGYTILGMPPPSSGTLGLSLVLNILESYGNSDAAKGSIGLHRLIEALKHMYAVRMNLGDPDFVNISNTISDMISPSFAKKLQQKIFDNTTFPPEYYMYRWSQLRDHGTSHFCIVDADRNAVSMTTTVNYPFGAGLLSPSTGIVLNNEMGDFSTPTEISPEHLPPAPTNFIRPNKRPLSSMTPIIVLKDNQLAGVIGGSGGLLIIPAVIQVFVNHFVLGKEPLDAVQNPRVYHKLIPNVVLYENWTVIDGDHIELPDERKHFLEERGHQLQARSGGAICQLVVQNLGNNNAFEMGRKHGKVPPHDQIFHGTLTAVSDPRKDGRPAAV 628
Match: A0A1S4AK47 ((gamma-glutamyltranspeptidase 3-like {ECO:0000313|RefSeq:XP_016477075.1}))
HSP 1 Score: 916.761 bits (2368), Expect = 0.000e+0
Identity = 444/629 (70.59%), Postives = 529/629 (84.10%), Query Frame = 0
Query: 1 MKQLRLEDPLLVTSGNSSTTR--WLRALCFFLALTAITFAGLTLSGYLEFGIVRGGGNYGNEGLSFGNEEVVKSDKAVVAADDARCSETGVSVLGQGGHAVDAAVATALCLGVVNAMASGIGGGGFMVVRSSATSRTEAINMRETAPLASSQTMYDNNPETKYKGALSMGVPGELAGLYEAWSRHGRLPWKTLFQPAIKLARDGFVIAPYLGNYIADYSDSIMRDPGLRQVYAPGGKLLKAGEKCYNVELGHSLEAIGELGPKAFYDGSIGERFVQDVRKAGGILTMEDLRSYRVDVTEAVSVNAMGYTILGMPSPSSGTLGISLVLNILESYGSTYAAMGSLGLHRLIEALKHMFAVRMDLGDPNFVNITKTVADMLSPAFAKRIQQRIFDNTTFPSEYYLHRWSQLRDHGTSHFCIVDADRNAVSLTTTVNYPFGAKVLSPSTGIVLNNEMDDFSTPAEVSPDQLPPAPANFIEPKKRPLSSMTPVVVLRDNQLVGVIGGSGGLYIIPAILQVFLNHFALGMEPLSAVQGPRVYHKLIPNVVLYEDWTCLDGEHIEVVPEVRRFLEERGHELEAKSGGAISQLIVQDLRNA-IPMDRENGKGTSDQVLCGILTGVSDPRKDGKPAAM 626
M++ LE PLL S S R W ALCF ALTAI+F GL G++ +V Y G N ++V+S++AVVAADD RCSE G+S+L GGHAVDAAVATALCLGVVN MASG+GGGGFMVVRSS+TS +AI+MRETAPLASSQ MYDNN +K +GALSMGVPGELAGL+ AWS+HGRLPWKTLFQPAIKLARDGFV+APYL ++IA + I++DPGLRQV AP GKLL+AGE C+NVEL HSLE I E GP+AFY+G +G+R ++DV++AGGILTM+DLR+Y+V++ EAV+VNAMGYTI+GMP PSSGTLGISL+L ILE Y AA GSLGLHRLIEA+KHMFAVRMDLGDP+FVNI+KTV+DMLSP+FAK IQ++IFDNTTFP EYY+ RWSQLRDHGTSHFCIVD+DRNAVS+TTTVNYPFGA VLSPSTGIVLN+EM DFSTP+E+SPD+LPPAPANFI+PKKRPLSSM P++VL+DNQL GVIGGSGGL IIPA++QVF+NHF LGM+PL+AVQ PRVYH+LIPNVVLYE+WTC+DG+HIE+ E + FLEERGH+LEA +GGAI QLIVQ+L N+ + + R +GK + V G+L VSDPRKDG+PAA+
Sbjct: 1 MRKQNLEAPLLDPSPASFNRRKKWSFALCFLFALTAISFIGLRHHGHIGIWLVGDVERY--NGRLQQNADIVESEQAVVAADDGRCSEIGISILKIGGHAVDAAVATALCLGVVNPMASGLGGGGFMVVRSSSTSEVQAIDMRETAPLASSQNMYDNNGNSKLEGALSMGVPGELAGLHAAWSKHGRLPWKTLFQPAIKLARDGFVVAPYLAHHIASKAKVILKDPGLRQVIAPEGKLLRAGEICHNVELSHSLELIAEQGPEAFYNGEVGKRLIEDVKRAGGILTMDDLRNYKVEIPEAVTVNAMGYTIVGMPPPSSGTLGISLILKILECYN---AAEGSLGLHRLIEAMKHMFAVRMDLGDPDFVNISKTVSDMLSPSFAKEIQRKIFDNTTFPPEYYMPRWSQLRDHGTSHFCIVDSDRNAVSVTTTVNYPFGAGVLSPSTGIVLNDEMGDFSTPSEISPDELPPAPANFIQPKKRPLSSMAPIIVLKDNQLAGVIGGSGGLKIIPAVVQVFINHFILGMDPLAAVQSPRVYHELIPNVVLYENWTCIDGDHIELSDEKKHFLEERGHQLEAHNGGAICQLIVQNLPNSPLKLGRRSGKEYKNGVFRGMLVAVSDPRKDGRPAAI 624
Match: A0A2R6Q517 ((Gamma-glutamyltranspeptidase {ECO:0000313|EMBL:PSS01945.1}))
HSP 1 Score: 915.22 bits (2364), Expect = 0.000e+0
Identity = 439/628 (69.90%), Postives = 530/628 (84.39%), Query Frame = 0
Query: 1 MKQLRLEDPLLVTSGNSSTTRWLRALCFFLALTAITFAGLTLSGYLEFGIVRGGGNYGNEGLSFGNEEVVKSDKAVVAADDARCSETGVSVLGQGGHAVDAAVATALCLGVVNAMASGIGGGGFMVVRSSATSRTEAINMRETAPLASSQTMYDNNPETKYKGALSMGVPGELAGLYEAWSRHGRLPWKTLFQPAIKLARDGFVIAPYLGNYIADYSDSIMRDPGLRQVYAPGGKLLKAGEKCYNVELGHSLEAIGELGPKAFYDGSIGERFVQDVRKAGGILTMEDLRSYRVDVTEAVSVNAMGYTILGMPSPSSGTLGISLVLNILESYGSTYAAMGSLGLHRLIEALKHMFAVRMDLGDPNFVNITKTVADMLSPAFAKRIQQRIFDNTTFPSEYYLHRWSQLRDHGTSHFCIVDADRNAVSLTTTVNYPFGAKVLSPSTGIVLNNEMDDFSTPAEVSPDQLPPAPANFIEPKKRPLSSMTPVVVLRDNQLVGVIGGSGGLYIIPAILQVFLNHFALGMEPLSAVQGPRVYHKLIPNVVLYEDWTCLDGEHIEVVPEVRR-FLEERGHELEAKSGGAISQLIVQDLRN-AIPMDRENGKGTSDQVLCGILTGVSDPRKDGKPAAM 626
M Q E PLL G + R R L FFLA AITF GL+L G F + GG NYG E + ++V+SD+AVVAADD RCSE G SVL QGGHAVDAAVATALCLGVVN MASG+GGG FM+VRSS+ S+T A +MRETAPLASSQ MY+NN + KYKG LS+GVPGELAGL+EAW ++GR PWK+LFQPAI+LA+DGFV+APYLG ++ +S I+ DPGL+QV+AP GKLL+AG+ CYNVELG SLE + E GP+AFY+G+IGE+ V+DVR AGGILTMEDLRSY+VD+T+A++VN+MGYTILGMP PSSGTLG+SLVLNIL+SYG+ AA GSLGLHRLIEALKHMF+VRM+LGDP+FVNI+ T++DMLSP++AK+++++IFDNTTFP EYY++RWSQLRDHGTSHFCIVDADRNAVS+TTT+NY FG+ +LSPSTG+++NNEM DFS P EVSPD LPPAP NFI+P KRPLSSM+P++VL+DNQL GVIGGSGG+ IIPA++QVFLNHF LGMEPL+AVQ PRVYHKLIPNVV YE+WT +DG+HIE +P+VRR FLEERGH+L+AKSGGAI QL+VQ L N + M R+ GK +SDQ+ G LT VSDPRKDG+PAA+
Sbjct: 1 MGQKSTEVPLLGGDGQPNKKRLRRVLLFFLAFLAITFVGLSLGGNFSFWEL-GGNNYG-ERIQIEVADIVESDQAVVAADDGRCSEIGASVLRQGGHAVDAAVATALCLGVVNPMASGVGGGAFMIVRSSSLSQTLAFDMRETAPLASSQDMYENNSKAKYKGPLSIGVPGELAGLHEAWLKYGRWPWKSLFQPAIELAKDGFVVAPYLGLALSSWSKLILADPGLQQVFAPNGKLLQAGDMCYNVELGRSLELVAEQGPQAFYNGTIGEKLVEDVRDAGGILTMEDLRSYKVDITDAIAVNSMGYTILGMPPPSSGTLGLSLVLNILDSYGNANAAKGSLGLHRLIEALKHMFSVRMNLGDPDFVNISNTISDMLSPSYAKKLRRKIFDNTTFPPEYYMYRWSQLRDHGTSHFCIVDADRNAVSMTTTINYGFGSGLLSPSTGVIMNNEMGDFSIPTEVSPDSLPPAPTNFIKPNKRPLSSMSPIIVLKDNQLAGVIGGSGGMNIIPAVIQVFLNHFILGMEPLAAVQNPRVYHKLIPNVVSYENWTVIDGDHIE-LPDVRRHFLEERGHQLQAKSGGAICQLVVQTLGNGGVNMGRKQGKISSDQIFHGTLTAVSDPRKDGRPAAV 625
Match: A0A5B7AM85 ((Uncharacterized protein {ECO:0000313|EMBL:MPA57800.1}) (Fragment))
HSP 1 Score: 914.064 bits (2361), Expect = 0.000e+0
Identity = 427/596 (71.64%), Postives = 515/596 (86.41%), Query Frame = 0
Query: 1 MKQLRLEDPLLVTSGNSSTTRWLRALCFFLALTAITFAGLTLSGYLEFGIVRGGGNYGNEGLSFGNEEVVKSDKAVVAADDARCSETGVSVLGQGGHAVDAAVATALCLGVVNAMASGIGGGGFMVVRSSATSRTEAINMRETAPLASSQTMYDNNPETKYKGALSMGVPGELAGLYEAWSRHGRLPWKTLFQPAIKLARDGFVIAPYLGNYIADYSDSIMRDPGLRQVYAPGGKLLKAGEKCYNVELGHSLEAIGELGPKAFYDGSIGERFVQDVRKAGGILTMEDLRSYRVDVTEAVSVNAMGYTILGMPSPSSGTLGISLVLNILESYGSTYAAMGSLGLHRLIEALKHMFAVRMDLGDPNFVNITKTVADMLSPAFAKRIQQRIFDNTTFPSEYYLHRWSQLRDHGTSHFCIVDADRNAVSLTTTVNYPFGAKVLSPSTGIVLNNEMDDFSTPAEVSPDQLPPAPANFIEPKKRPLSSMTPVVVLRDNQLVGVIGGSGGLYIIPAILQVFLNHFALGMEPLSAVQGPRVYHKLIPNVVLYEDWTCLDGEHIEVVPEVRRFLEERGHELEAKSGGAISQLIVQDLRNAIPMDR 596
M Q +E PLL + G ++ RW RAL F LA I F GLT+ G F ++R G YG + + ++V+S++AVVAADD RCSE G S+L GGHA+DAAVATALC+GVVN MASGIGGG F++VRSSATS+T+A +MRETAPLA+SQ MY NNPE K+ GALSMGVPGELAGL+EAW ++GRLPW+TLFQPAIKLA+DGFV+APYLG+ IA+ + IM DPGL+QV+AP GKLL+AG+ CYNVELG SLEA+ E GP+AFY+G++GE+ V+DVR+AGGILTMEDLR+Y VDVT+A++VNAMGYTILGMP PSSGTLG+SLVLNIL+SYG++ A GSLGLHRLIE LKHMFAVRM+LGDP+FVNI+KT++DMLSP++AK++QQ+IFDNTTFP EYYL+RWSQLRDHGTSHFCIVDADRNAVS+TTTVNY FGA VLSPSTGI+LNNEM DFSTP E+SPD+LPPAP NFI+P KRPLSSMTP++VL+DNQL GV+GGSGG+YIIPA++QVFLNHF +GMEPL+AVQ PRVYHKLIPNVVLYE+WT LDG+HIE+ E ++FLEERGH+LE K GGAI QL+VQ+L+N PMD+
Sbjct: 28 MGQQSIEAPLLGSDGQTNKKRWSRALLFLLAFITIIFVGLTVGGNSSFWLLRSGNKYGTR-IQIEDADIVESEQAVVAADDGRCSEIGASILRHGGHAIDAAVATALCVGVVNPMASGIGGGSFLIVRSSATSQTQAYDMRETAPLAASQNMYANNPEAKFVGALSMGVPGELAGLHEAWLKYGRLPWRTLFQPAIKLAKDGFVVAPYLGSSIANCAKMIMTDPGLQQVFAPNGKLLQAGDTCYNVELGRSLEAVAEQGPQAFYNGTVGEKLVKDVREAGGILTMEDLRNYSVDVTDAMAVNAMGYTILGMPPPSSGTLGLSLVLNILDSYGNSNAVKGSLGLHRLIETLKHMFAVRMNLGDPDFVNISKTISDMLSPSYAKKLQQKIFDNTTFPPEYYLNRWSQLRDHGTSHFCIVDADRNAVSMTTTVNYGFGAGVLSPSTGIILNNEMGDFSTPTEISPDKLPPAPTNFIKPNKRPLSSMTPIIVLKDNQLAGVLGGSGGMYIIPAVIQVFLNHFIIGMEPLAAVQSPRVYHKLIPNVVLYENWTVLDGDHIELPEERKQFLEERGHQLEPKEGGAICQLVVQNLQN--PMDK 620
Match: A0A251NGY2 ((Uncharacterized protein {ECO:0000313|EMBL:ONH97889.1}))
HSP 1 Score: 913.294 bits (2359), Expect = 0.000e+0
Identity = 426/627 (67.94%), Postives = 518/627 (82.62%), Query Frame = 0
Query: 1 MKQLRLEDPLLVTSGNSSTTRWLRALCFFLALTAITFAGLTLSGYLEFGI-VRGGGNYGNEGLSFGNEEVVKSDKAVVAADDARCSETGVSVLGQGGHAVDAAVATALCLGVVNAMASGIGGGGFMVVRSSATSRTEAINMRETAPLASSQTMYDNNPETKYKGALSMGVPGELAGLYEAWSRHGRLPWKTLFQPAIKLARDGFVIAPYLGNYIADYSDSIMRDPGLRQVYAPGGKLLKAGEKCYNVELGHSLEAIGELGPKAFYDGSIGERFVQDVRKAGGILTMEDLRSYRVDVTEAVSVNAMGYTILGMPSPSSGTLGISLVLNILESYGSTYAAMGSLGLHRLIEALKHMFAVRMDLGDPNFVNITKTVADMLSPAFAKRIQQRIFDNTTFPSEYYLHRWSQLRDHGTSHFCIVDADRNAVSLTTTVNYPFGAKVLSPSTGIVLNNEMDDFSTPAEVSPDQLPPAPANFIEPKKRPLSSMTPVVVLRDNQLVGVIGGSGGLYIIPAILQVFLNHFALGMEPLSAVQGPRVYHKLIPNVVLYEDWTCLDGEHIEVVPEVRRFLEERGHELEAKSGGAISQLIVQDLRNAIPMDRENGKGTSDQVLCGILTGVSDPRKDGKPAAM 626
M Q L PLL + G++++ RA LA AI F G G+ + +RG NY + ++V+S+K VVAADDARCSE G S+L QGGHAVDAAV TALCLGVVN+MASGIGGGGFM+VRSSATS+T+A ++RETAP+A+SQ MY+ NP+ K GALSMGVPGE+AGL+EAW +HGR+ WKTLFQPAIKLA+DG+VIAPYLG YI+ + D I+ DPGLRQV+AP GKLL+ G+ CYNVELGHSLEA+ ELGP+ FY+GS+GE+ V+DVR+AGGILTMEDLR+Y+V V E V+ N MGY + GMP PSSGTLG+SLVLNI +SYG++ AA G LGLHRLIEALKHMFAVRM+LGDP FV+ +K +DMLS +FAK+IQQ+IFDNTTFP EYYL RWSQLRDHGTSHFCIVDADRNAVS+T+TVNYPFG VLSPSTGI+LNNEMDDFSTP E+SPD+LPPAPANFIEP KRPLSSMTP+++++DN+L GVIGGSGG+ IIPA+ QVFLN+F LGMEPL+AVQ PR+YHKLIPNVV YE+ T +DG+HIE+ E + FL+ERGH+LEAK+GGAI+QL+VQ LR + M R++G+ +++Q G LT VSDPRKDGKPAA+
Sbjct: 1 MAQQSLAAPLLDSHGSTTS----RAFWLLLAFVAIIFVGFIFGGHTNGRVLIRGANNYNEGNFKINDSDIVESEKGVVAADDARCSEVGASILRQGGHAVDAAVGTALCLGVVNSMASGIGGGGFMLVRSSATSQTQAFDLRETAPIAASQNMYETNPKAKLLGALSMGVPGEIAGLHEAWLQHGRMAWKTLFQPAIKLAKDGYVIAPYLGGYISRFGDKILSDPGLRQVFAPNGKLLQTGDTCYNVELGHSLEAVAELGPQTFYNGSVGEKLVKDVREAGGILTMEDLRNYKVSVVEPVAANVMGYNVFGMPPPSSGTLGLSLVLNIFDSYGTSDAAKGDLGLHRLIEALKHMFAVRMNLGDPAFVDTSKYASDMLSSSFAKKIQQKIFDNTTFPPEYYLQRWSQLRDHGTSHFCIVDADRNAVSMTSTVNYPFGGGVLSPSTGILLNNEMDDFSTPTEISPDRLPPAPANFIEPNKRPLSSMTPLIIMKDNELAGVIGGSGGMNIIPAVTQVFLNYFVLGMEPLAAVQSPRIYHKLIPNVVSYENLTLIDGDHIELSDEKKLFLQERGHQLEAKAGGAITQLVVQTLRKPVNMGRKSGQNSNEQTFHGTLTAVSDPRKDGKPAAV 623
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7AM93 | E-Value: 0.000e+0, PID: 70.70 | (Uncharacterized protein {ECO:0000313|EMBL:MPA5779... [more] |
| A0A5B7ALX6 | E-Value: 0.000e+0, PID: 71.50 | (Uncharacterized protein {ECO:0000313|EMBL:MPA5780... [more] |
| A0A5J5AYK4 | E-Value: 0.000e+0, PID: 70.61 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8534... [more] |
| A0A6P6T3W7 | E-Value: 0.000e+0, PID: 72.68 | (glutathione hydrolase 3 isoform X1 {ECO:0000313|R... [more] |
| A0A068U3X4 | E-Value: 0.000e+0, PID: 72.04 | (Uncharacterized protein {ECO:0000313|EMBL:CDP0322... [more] |
| A0A834GZ45 | E-Value: 0.000e+0, PID: 70.75 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7143... [more] |
| A0A1S4AK47 | E-Value: 0.000e+0, PID: 70.59 | (gamma-glutamyltranspeptidase 3-like {ECO:0000313|... [more] |
| A0A2R6Q517 | E-Value: 0.000e+0, PID: 69.90 | (Gamma-glutamyltranspeptidase {ECO:0000313|EMBL:PS... [more] |
| A0A5B7AM85 | E-Value: 0.000e+0, PID: 71.64 | (Uncharacterized protein {ECO:0000313|EMBL:MPA5780... [more] |
| A0A251NGY2 | E-Value: 0.000e+0, PID: 67.94 | (Uncharacterized protein {ECO:0000313|EMBL:ONH9788... [more] |
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |
