Resource Type:
Polypeptide
Name:
XM_017367130.1
Identifier:
XM_017367130.1-protein
Sequence:
MSRSDLAHKIFPEPCNILSDDIDHFDSLPDSILLLIFNQIADVKALGRCC
LVSKRFHFLVPQVDNILVRVDCVISDDDSSGGSSSSSSVSKSHTPFSSLF
RFVFGGIVKPLQSLTQFLQFKRSVNGTGFAASSSSLSVNGEDYDELDQGG
VTHHSPTQVLKNFNEIKILRIELPSGELGVDDGVLLKWRADFGSTLDNCV
ILGASSVMPSKGLDGNGVNLINEDDNGSIPESFYTNGGLKLRVVWTISSL
IAASARHYLLQPIISEHKTLDSLVLTDGDGQGVLCMNREQLEELRVKPLS
ASSASKRTLVPALNMRLWYAPHLELPDGTVLKGATLVAIRPSEQSVVKKE
VADGSWVSSAFEEPYGTAAKMLIKRRTYCLEMNSF
Sequence Length:
385
Sequence Checksum:
1f3bc43c9ee2adbea76e4797f5d269aa
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017367130.1, derives from mRNA, XM_017367130.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017367130.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
back to top
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017367130.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZYP1 ((Uncharacterized protein {ECO:0000313|EMBL:MPA48591.1}))
HSP 1 Score: 598.586 bits (1542), Expect = 0.000e+0
Identity = 305/396 (77.02%), Postives = 332/396 (83.84%), Query Frame = 0
Match: A0A5B6ZYP1 ((Uncharacterized protein {ECO:0000313|EMBL:MPA48591.1}))
HSP 1 Score: 598.586 bits (1542), Expect = 0.000e+0
Identity = 305/396 (77.02%), Postives = 332/396 (83.84%), Query Frame = 0
Query: 3 RSDLAHKIFPEPCNILS-DDIDHFDSLPDSILLLIFNQIADVKALGRCCLVSKRFHFLVPQVDNILVRVDCVISDDDSSGGSSSSSSVSKSHTPFSSLFRFVFGGIVKPLQSLTQFLQFKRSVNGTGFAASSSSLSVNGEDYDELDQGGVTHHSPTQVLKNFNEIKILRIELPSGELGVDDGVLLKWRADFGSTLDNCVILGASSVM---PSKGL---DGNGVNLINE------DDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIISEHKTLDSLVLTDGDGQGVLCMNREQLEELRVKPLSASSASKRTLVPALNMRLWYAPHLELPDGTVLKGATLVAIRPSEQSVVKKEVADGSWVSSAFEEPYGTAAKMLIKRRTYCLEMNSF 385
R DL KI+PEP S IDHFD LPDS+LLL+FN+I DVKALGRCC+VS+RFH LVPQV+N++VRVDCVISDDD+S S++ S KS FS+LFR VFGGIVKPLQ+L QFL KRS + + A + S G YD+LDQGGVTHHSPTQVLKNFNEI+ LRIELPSGELG+DDGVLLKWRADFGSTLDNCVILGASSV+ P+K L D NG DDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPII+EHKTLDSLVLTD DGQGVLCMNR+QLEELRVKPLSASSASKRTLVPALNMRLWYAPHLEL DGTVLKGATLVAIRPSEQS KKEV+DGSWVS+AFEEPYGTAAKML+KRRTYCLEMNSF
Sbjct: 5 RPDLKTKIYPEPYTYTSVSGIDHFDRLPDSLLLLVFNKIGDVKALGRCCVVSRRFHSLVPQVENVVVRVDCVISDDDAS---SAAGSSDKSRGAFSNLFRLVFGGIVKPLQALGQFLGPKRSNSASSSLAVGTGASAGG--YDDLDQGGVTHHSPTQVLKNFNEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGASSVIYPGPTKYLLSQDNNGDGFCGNNGNSGGDDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDADGQGVLCMNRDQLEELRVKPLSASSASKRTLVPALNMRLWYAPHLELTDGTVLKGATLVAIRPSEQSAAKKEVSDGSWVSAAFEEPYGTAAKMLVKRRTYCLEMNSF 395
BLAST of XM_017367130.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A0K6 ((Uncharacterized protein {ECO:0000313|EMBL:MPA48593.1}))
HSP 1 Score: 596.66 bits (1537), Expect = 0.000e+0
Identity = 304/396 (76.77%), Postives = 331/396 (83.59%), Query Frame = 0
Match: A0A5B7A0K6 ((Uncharacterized protein {ECO:0000313|EMBL:MPA48593.1}))
HSP 1 Score: 596.66 bits (1537), Expect = 0.000e+0
Identity = 304/396 (76.77%), Postives = 331/396 (83.59%), Query Frame = 0
Query: 3 RSDLAHKIFPEPCNILS-DDIDHFDSLPDSILLLIFNQIADVKALGRCCLVSKRFHFLVPQVDNILVRVDCVISDDDSSGGSSSSSSVSKSHTPFSSLFRFVFGGIVKPLQSLTQFLQFKRSVNGTGFAASSSSLSVNGEDYDELDQGGVTHHSPTQVLKNFNEIKILRIELPSGELGVDDGVLLKWRADFGSTLDNCVILGASSVM---PSKGL---DGNGVNLINE------DDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIISEHKTLDSLVLTDGDGQGVLCMNREQLEELRVKPLSASSASKRTLVPALNMRLWYAPHLELPDGTVLKGATLVAIRPSEQSVVKKEVADGSWVSSAFEEPYGTAAKMLIKRRTYCLEMNSF 385
R DL KI+PEP S IDHFD LPDS+LLL+FN+I DVKALGRCC+VS+RF LVPQV+N++VRVDCVISDDD+S S++ S KS FS+LFR VFGGIVKPLQ+L QFL KRS + + A + S G YD+LDQGGVTHHSPTQVLKNFNEI+ LRIELPSGELG+DDGVLLKWRADFGSTLDNCVILGASSV+ P+K L D NG DDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPII+EHKTLDSLVLTD DGQGVLCMNR+QLEELRVKPLSASSASKRTLVPALNMRLWYAPHLEL DGTVLKGATLVAIRPSEQS KKEV+DGSWVS+AFEEPYGTAAKML+KRRTYCLEMNSF
Sbjct: 5 RPDLKTKIYPEPYTYTSVSGIDHFDRLPDSLLLLVFNKIGDVKALGRCCVVSRRFQSLVPQVENVVVRVDCVISDDDAS---SAAGSSDKSRGAFSNLFRLVFGGIVKPLQALGQFLGPKRSNSASSSLAVGTGASAGG--YDDLDQGGVTHHSPTQVLKNFNEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGASSVIYPGPTKYLLSQDNNGDGFCGNNGNSGGDDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDADGQGVLCMNRDQLEELRVKPLSASSASKRTLVPALNMRLWYAPHLELTDGTVLKGATLVAIRPSEQSAAKKEVSDGSWVSAAFEEPYGTAAKMLVKRRTYCLEMNSF 395
BLAST of XM_017367130.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZYP8 ((Uncharacterized protein {ECO:0000313|EMBL:MPA48601.1}))
HSP 1 Score: 596.275 bits (1536), Expect = 0.000e+0
Identity = 304/396 (76.77%), Postives = 332/396 (83.84%), Query Frame = 0
Match: A0A5B6ZYP8 ((Uncharacterized protein {ECO:0000313|EMBL:MPA48601.1}))
HSP 1 Score: 596.275 bits (1536), Expect = 0.000e+0
Identity = 304/396 (76.77%), Postives = 332/396 (83.84%), Query Frame = 0
Query: 3 RSDLAHKIFPEPCNILS-DDIDHFDSLPDSILLLIFNQIADVKALGRCCLVSKRFHFLVPQVDNILVRVDCVISDDDSSGGSSSSSSVSKSHTPFSSLFRFVFGGIVKPLQSLTQFLQFKRSVNGTGFAASSSSLSVNGEDYDELDQGGVTHHSPTQVLKNFNEIKILRIELPSGELGVDDGVLLKWRADFGSTLDNCVILGASSVM---PSKGL---DGNGVNLINE------DDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIISEHKTLDSLVLTDGDGQGVLCMNREQLEELRVKPLSASSASKRTLVPALNMRLWYAPHLELPDGTVLKGATLVAIRPSEQSVVKKEVADGSWVSSAFEEPYGTAAKMLIKRRTYCLEMNSF 385
R DLA KI+PEP + IDHFD LPDS+LLL+FN+I DVKALGRCC+VS+RF LVPQV+N++VRVDCVISDDD+S S++ S KS FS+LFR VFGGIVKPLQ+L QFL KRS + + A + S G YD+LDQGGVTHHSPTQVLKNFNEI+ LRIELPSGELG+DDGVLLKWRADFGSTLDNCVILGASSV+ P+K L D NG DDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPII+EHKTLDSLVLTD DGQGVLCMNR+QLEELRVKPLSASSASKRTLVPALNMRLWYAPHLEL DGTVLKGATLVAIRPSEQS KKEV+DGSWVS+AFEEPYGTAAKML+KRRTYCLEMNSF
Sbjct: 5 RPDLATKIYPEPYSYTPISGIDHFDRLPDSLLLLVFNKIGDVKALGRCCVVSRRFQSLVPQVENVVVRVDCVISDDDAS---SAAGSSDKSRGAFSNLFRLVFGGIVKPLQALGQFLGPKRSNSASSSLAVGTGASAGG--YDDLDQGGVTHHSPTQVLKNFNEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGASSVIYPGPTKYLLSQDNNGDGFCGNNGNSGGDDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDADGQGVLCMNRDQLEELRVKPLSASSASKRTLVPALNMRLWYAPHLELTDGTVLKGATLVAIRPSEQSAAKKEVSDGSWVSAAFEEPYGTAAKMLVKRRTYCLEMNSF 395
BLAST of XM_017367130.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6HLT5 ((Uncharacterized protein {ECO:0000313|EMBL:CCB55809.1}))
HSP 1 Score: 590.112 bits (1520), Expect = 0.000e+0
Identity = 305/402 (75.87%), Postives = 339/402 (84.33%), Query Frame = 0
Match: F6HLT5 ((Uncharacterized protein {ECO:0000313|EMBL:CCB55809.1}))
HSP 1 Score: 590.112 bits (1520), Expect = 0.000e+0
Identity = 305/402 (75.87%), Postives = 339/402 (84.33%), Query Frame = 0
Query: 3 RSDLAHKIFPEPCN------ILSDDIDHFDSLPDSILLLIFNQIADVKALGRCCLVSKRFHFLVPQVDNILVRVDCVISDDDSSGGSSSSSSVSKSHTPFSSLFRFVFGGIVKPLQSLTQFLQFKRSVNGTGFAASSSSLSVNG---EDYDELDQ-GGVTHHSPTQVLKNFNEIKILRIELPSGELGVDDGVLLKWRADFGSTLDNCVILGASSVM---PSKGL----DGNGVNLINE--DDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIISEHKTLDSLVLTDGDGQGVLCMNREQLEELRVKPLSASSASKRTLVPALNMRLWYAPHLELPDGTVLKGATLVAIRPSEQSVVKKEVADGSWVSSAFEEPYGTAAKMLIKRRTYCLEMNSF 385
R D + +I+PEP N ++++ IDHFD LPDS+LLL+FN+I DVKALGRCC+VS+RFH LVPQV+N++VRVDCVISDD+SS S++ S+ KS PFS LFR VFGGIVKPLQ+L QFL KRS T SSSL+V G ED D Q GGVTHHSPTQVLKNFNEI+ LRIELPSGELG++DGVLLKWRADFGSTLDNCVILGA+SV+ P+KG GN ++ DDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPII+EHKTLDSLVLTD DGQGVLCMNR+QLEELRVKPLSASSASKRTLVPALNMRLWYAPHLELPDG VLKGATLVAIRPSEQSV KKEV+DGSWVS+AFEEPYGTAAKML+KRRTYCLEMNSF
Sbjct: 6 RPDPSTRIWPEPQNSPPPVMMMAEAIDHFDRLPDSLLLLVFNKIGDVKALGRCCVVSRRFHTLVPQVENVVVRVDCVISDDESS---SAAGSLEKSRGPFSHLFRLVFGGIVKPLQALGQFLGPKRSAPTT-----SSSLAVGGGSEEDGDVDHQTGGVTHHSPTQVLKNFNEIRFLRIELPSGELGIEDGVLLKWRADFGSTLDNCVILGAASVICPGPTKGSGVQDSGNDAFCVSNGGDDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDADGQGVLCMNRDQLEELRVKPLSASSASKRTLVPALNMRLWYAPHLELPDGIVLKGATLVAIRPSEQSVTKKEVSDGSWVSAAFEEPYGTAAKMLVKRRTYCLEMNSF 399
BLAST of XM_017367130.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438HZN5 ((F-box protein {ECO:0000313|EMBL:RVW89923.1}))
HSP 1 Score: 590.112 bits (1520), Expect = 0.000e+0
Identity = 305/402 (75.87%), Postives = 339/402 (84.33%), Query Frame = 0
Match: A0A438HZN5 ((F-box protein {ECO:0000313|EMBL:RVW89923.1}))
HSP 1 Score: 590.112 bits (1520), Expect = 0.000e+0
Identity = 305/402 (75.87%), Postives = 339/402 (84.33%), Query Frame = 0
Query: 3 RSDLAHKIFPEPCN------ILSDDIDHFDSLPDSILLLIFNQIADVKALGRCCLVSKRFHFLVPQVDNILVRVDCVISDDDSSGGSSSSSSVSKSHTPFSSLFRFVFGGIVKPLQSLTQFLQFKRSVNGTGFAASSSSLSVNG---EDYDELDQ-GGVTHHSPTQVLKNFNEIKILRIELPSGELGVDDGVLLKWRADFGSTLDNCVILGASSVM---PSKGL----DGNGVNLINE--DDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIISEHKTLDSLVLTDGDGQGVLCMNREQLEELRVKPLSASSASKRTLVPALNMRLWYAPHLELPDGTVLKGATLVAIRPSEQSVVKKEVADGSWVSSAFEEPYGTAAKMLIKRRTYCLEMNSF 385
R D + +I+PEP N ++++ IDHFD LPDS+LLL+FN+I DVKALGRCC+VS+RFH LVPQV+N++VRVDCVISDD+SS S++ S+ KS PFS LFR VFGGIVKPLQ+L QFL KRS T SSSL+V G ED D Q GGVTHHSPTQVLKNFNEI+ LRIELPSGELG++DGVLLKWRADFGSTLDNCVILGA+SV+ P+KG GN ++ DDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPII+EHKTLDSLVLTD DGQGVLCMNR+QLEELRVKPLSASSASKRTLVPALNMRLWYAPHLELPDG VLKGATLVAIRPSEQSV KKEV+DGSWVS+AFEEPYGTAAKML+KRRTYCLEMNSF
Sbjct: 6 RPDPSTRIWPEPQNSPPPVMMMAEAIDHFDRLPDSLLLLVFNKIGDVKALGRCCVVSRRFHTLVPQVENVVVRVDCVISDDESS---SAAGSLEKSRGPFSHLFRLVFGGIVKPLQALGQFLGPKRSAPTT-----SSSLAVGGGSEEDGDVDHQTGGVTHHSPTQVLKNFNEIRFLRIELPSGELGIEDGVLLKWRADFGSTLDNCVILGAASVICPGPTKGSGVQDSGNDAFCVSNGGDDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDADGQGVLCMNRDQLEELRVKPLSASSASKRTLVPALNMRLWYAPHLELPDGIVLKGATLVAIRPSEQSVTKKEVSDGSWVSAAFEEPYGTAAKMLVKRRTYCLEMNSF 399
BLAST of XM_017367130.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A5ATM2 ((Uncharacterized protein {ECO:0000313|EMBL:CAN73778.1}))
HSP 1 Score: 588.956 bits (1517), Expect = 0.000e+0
Identity = 304/402 (75.62%), Postives = 339/402 (84.33%), Query Frame = 0
Match: A5ATM2 ((Uncharacterized protein {ECO:0000313|EMBL:CAN73778.1}))
HSP 1 Score: 588.956 bits (1517), Expect = 0.000e+0
Identity = 304/402 (75.62%), Postives = 339/402 (84.33%), Query Frame = 0
Query: 3 RSDLAHKIFPEPCN------ILSDDIDHFDSLPDSILLLIFNQIADVKALGRCCLVSKRFHFLVPQVDNILVRVDCVISDDDSSGGSSSSSSVSKSHTPFSSLFRFVFGGIVKPLQSLTQFLQFKRSVNGTGFAASSSSLSVNG---EDYDELDQ-GGVTHHSPTQVLKNFNEIKILRIELPSGELGVDDGVLLKWRADFGSTLDNCVILGASSVM---PSKG--LDGNGVNLI----NEDDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIISEHKTLDSLVLTDGDGQGVLCMNREQLEELRVKPLSASSASKRTLVPALNMRLWYAPHLELPDGTVLKGATLVAIRPSEQSVVKKEVADGSWVSSAFEEPYGTAAKMLIKRRTYCLEMNSF 385
R D + +I+PEP N ++++ IDHFD LPDS+LLL+FN+I DVKALGRCC+VS+RFH LVPQV+N++VRVDCVISDD+SS S++ S+ KS PFS LFR VFGGIVKPLQ+L QFL KRS T SSSL+V G ED D Q GGVTHHSPTQVLKNFNEI+ LRIELPSGELG++DGVLLKWRADFGSTLDNCVILGA+SV+ P+KG + +G + DDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPII+EHKTLDSLVLTD DGQGVLCMNR+QLEELRVKPLSASSASKRTLVPALNMRLWYAPHLELPDG VLKGATLVAIRPSEQSV KKEV+DGSWVS+AFEEPYGTAAKML+KRRTYCLEMNSF
Sbjct: 6 RPDPSTRIWPEPQNSPPPVMMMAEAIDHFDRLPDSLLLLVFNKIGDVKALGRCCVVSRRFHTLVPQVENVVVRVDCVISDDESS---SAAGSLEKSRGPFSHLFRLVFGGIVKPLQALGQFLGPKRSAPTT-----SSSLAVGGGSEEDGDVDHQTGGVTHHSPTQVLKNFNEIRFLRIELPSGELGIEDGVLLKWRADFGSTLDNCVILGAASVICPGPTKGSGVQDSGXDAFCVSNGGDDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDADGQGVLCMNRDQLEELRVKPLSASSASKRTLVPALNMRLWYAPHLELPDGIVLKGATLVAIRPSEQSVTKKEVSDGSWVSAAFEEPYGTAAKMLVKRRTYCLEMNSF 399
BLAST of XM_017367130.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4DMP5 ((Uncharacterized protein {ECO:0000313|EMBL:THG04272.1}))
HSP 1 Score: 585.104 bits (1507), Expect = 0.000e+0
Identity = 303/394 (76.90%), Postives = 338/394 (85.79%), Query Frame = 0
Match: A0A4S4DMP5 ((Uncharacterized protein {ECO:0000313|EMBL:THG04272.1}))
HSP 1 Score: 585.104 bits (1507), Expect = 0.000e+0
Identity = 303/394 (76.90%), Postives = 338/394 (85.79%), Query Frame = 0
Query: 3 RSDLAHKIFPEP-CNILSDDIDHFDSLPDSILLLIFNQIADVKALGRCCLVSKRFHFLVPQVDNILVRVDCVISDDDSSGGSSSSSSVSKSHTPFSSLFRFVFGGIVKPLQSLTQFLQFKRSVNGTGFAASSSSLSVNGEDYDELDQGGVTHHSPTQVLKNFNEIKILRIELPSGELGVDDGVLLKWRADFGSTLDNCVILGASSVM---PSKGLD-------GNGVNLINEDDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIISEHKTLDSLVLTDGDGQGVLCMNREQLEELRVKPLSASSASKRTLVPALNMRLWYAPHLELPDGTVLKGATLVAIRPSEQSVVKKEVADGSWVSSAFEEPYGTAAKMLIKRRTYCLEMNSF 385
R DL K++PEP + SD+IDHFD LPDSILLLIFN+I DVKALGRCC++S+RF+ LVPQV+N++VRVDCVISDDD+S S+S S KS FS+LFRFVFGGIVKPLQ+L QFL KRS + + ++ S + +D ELDQGGVTHHSPTQVLKNFNEI+ LRIELPSGELG+D+GVLLKWRADFGSTLDNCVILGASSV+ PSK LD GN + + D+NGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIISEHKTLDSLVLTD DGQGVLCMNR+QLEELRVKPLSASSASKRTLVPALNMRLWYAPHLELPDGTVLKGATLVAIRPSEQS VKKEV++G WVS+AFEEP+G AAKML+KRRTYCLEMNSF
Sbjct: 5 RPDLTTKVYPEPYTSSSSDEIDHFDLLPDSILLLIFNKIGDVKALGRCCVISRRFYTLVPQVENVVVRVDCVISDDDAS---STSGSSDKSRGAFSNLFRFVFGGIVKPLQALGQFLGPKRSNSASSSSSLSVGTGASADD--ELDQGGVTHHSPTQVLKNFNEIRCLRIELPSGELGIDEGVLLKWRADFGSTLDNCVILGASSVIYPNPSKNLDNNGDGFCGNAIAIAGGDENGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIISEHKTLDSLVLTDADGQGVLCMNRDQLEELRVKPLSASSASKRTLVPALNMRLWYAPHLELPDGTVLKGATLVAIRPSEQSAVKKEVSEGCWVSAAFEEPFGMAAKMLVKRRTYCLEMNSF 393
BLAST of XM_017367130.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P5WXM4 ((F-box protein At5g46170-like {ECO:0000313|RefSeq:XP_022720261.1}))
HSP 1 Score: 575.474 bits (1482), Expect = 0.000e+0
Identity = 293/401 (73.07%), Postives = 331/401 (82.54%), Query Frame = 0
Match: A0A6P5WXM4 ((F-box protein At5g46170-like {ECO:0000313|RefSeq:XP_022720261.1}))
HSP 1 Score: 575.474 bits (1482), Expect = 0.000e+0
Identity = 293/401 (73.07%), Postives = 331/401 (82.54%), Query Frame = 0
Query: 3 RSDLAHKIFPEPCNILSDDIDHFDSLPDSILLLIFNQIADVKALGRCCLVSKRFHFLVPQVDNILVRVDCVISDDDSSGGSSSSSSVSKSHTPFSSLFRFVFGGIVKPLQSLTQFLQFKR-SVNGTGFAASSSSLSVN--GEDYDELDQGGVTHHSPTQVLKNFNEIKILRIELPSGELGVDDGVLLKWRADFGSTLDNCVILGASSVMPSKGLD---------------GNGVNLINEDDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIISEHKTLDSLVLTDGDGQGVLCMNREQLEELRVKPLSASSASKRTLVPALNMRLWYAPHLELPDGTVLKGATLVAIRPSEQSVVKKEVADGSWVSSAFEEPYGTAAKMLIKRRTYCLEMNSF 385
RSD H+I+PEP IDHFD LPDS+LLL+FN+I DVKALGRCC+VS+RFH LVPQV+N++VRVDCVISDDD +SS S++ PFS+LFR VFGGI KP+ +L QFL+ KR ++N T A SSSSLSV G D ELDQGGVTHHSPTQVL+NFNEI+ LRIELPSGELG+DDGVLLKWRADFGSTLDNCVILGA+S++ + L +G N+ N DDNGSIP+SFYTNGGLKLRV+WTISSLIAASARHYLLQPII+EHKTLDSLVLTD +GQGVLCMNR+QLEELRVKPLSASSASKRTLVPALNMRLWYA HLELPDG VLKGATLVAIRPSEQ KK+V+D W+S+AFEEPYGTAAKML+KRRTYCLEMNSF
Sbjct: 5 RSDPIHRIYPEP-------IDHFDRLPDSLLLLVFNKIGDVKALGRCCVVSRRFHSLVPQVENVVVRVDCVISDDDCPHSASSDKSLASG--PFSNLFRLVFGGIFKPILALGQFLRPKRPTLNETLNAPSSSSLSVGPGGADDGELDQGGVTHHSPTQVLRNFNEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGAASIINNVHLHVSEYGSGAFCMNNNITSGPNVGNGDDNGSIPDSFYTNGGLKLRVIWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDANGQGVLCMNRDQLEELRVKPLSASSASKRTLVPALNMRLWYASHLELPDGVVLKGATLVAIRPSEQPASKKDVSDAFWLSTAFEEPYGTAAKMLVKRRTYCLEMNSF 396
BLAST of XM_017367130.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7CQF7 ((F-box protein {ECO:0000313|EMBL:KAF5736342.1}))
HSP 1 Score: 573.163 bits (1476), Expect = 0.000e+0
Identity = 304/402 (75.62%), Postives = 333/402 (82.84%), Query Frame = 0
Match: A0A7J7CQF7 ((F-box protein {ECO:0000313|EMBL:KAF5736342.1}))
HSP 1 Score: 573.163 bits (1476), Expect = 0.000e+0
Identity = 304/402 (75.62%), Postives = 333/402 (82.84%), Query Frame = 0
Query: 1 MSRSDLAHKIFPEPCNILSDDIDHFDSLPDSILLLIFNQIADVKALGRCCLVSKRFHFLVPQVDNILVRVDCVISDDDSSGGSSSSSSV--SKSHTPFSSLFRFVFGGIVKPLQSLTQFLQFKRSVNGTGFAASSSSLSVNGEDYDELDQGGVTHHSPTQVLKNFNEIKILRIELPSGELGVDDGVLLKWRADFGSTLDNCVILGASSVM---PSKG------------LDGNGVNLINEDDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIISEHKTLDSLVLTDGDGQGVLCMNREQLEELRVKPLSASSASKRTLVPALNMRLWYAPHLELPDGTVLKGATLVAIRPSEQSVVKKEVADGSWVSSAFEEPYGTAAKMLIKRRTYCLEMNSF 385
RSD +I PEP IDHFD LPDS+LLL+FN+I DVKALGRCC+VS RFH LVPQVDN++VRVDCVISDDDSS SSS+ + S PFSS+ R + GGIVKPLQ+L QFL KR++ + + SSSL+V ED ++DQGGVTHHSPTQVLKNFNEI+ LRIELPSGELG+DDGVLLKWRADFGSTLDNCVILGA+SV+ P+K ++ NGVN DD GSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIISEHKTLDSLVLTD DGQGVLCMNREQLEELRVKPLSASSASKRTLVPALNMRLWYAPHLELPDGTVLKGATLVAI PSEQSV KKEV+DGSWVS+AFEEPYGTAAKML+KRRTYCLEMNSF
Sbjct: 3 FQRSDPTFRINPEP-------IDHFDRLPDSVLLLVFNKIGDVKALGRCCVVSHRFHSLVPQVDNVVVRVDCVISDDDSSSTSSSADKSRNTASSGPFSSIVRLLLGGIVKPLQALGQFLGPKRAIVSSNSGSPSSSLAVVSEDDGDMDQGGVTHHSPTQVLKNFNEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGAASVVNNGPAKNNNSIDNVSDGLCVNSNGVNGAPADDYGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIISEHKTLDSLVLTDADGQGVLCMNREQLEELRVKPLSASSASKRTLVPALNMRLWYAPHLELPDGTVLKGATLVAISPSEQSVAKKEVSDGSWVSTAFEEPYGTAAKMLVKRRTYCLEMNSF 397
BLAST of XM_017367130.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZVQ6 ((Uncharacterized protein {ECO:0000313|EMBL:MPA48597.1}))
HSP 1 Score: 573.163 bits (1476), Expect = 0.000e+0
Identity = 302/402 (75.12%), Postives = 328/402 (81.59%), Query Frame = 0
Match: A0A5B6ZVQ6 ((Uncharacterized protein {ECO:0000313|EMBL:MPA48597.1}))
HSP 1 Score: 573.163 bits (1476), Expect = 0.000e+0
Identity = 302/402 (75.12%), Postives = 328/402 (81.59%), Query Frame = 0
Query: 3 RSDLAHKIFPEPCNILS-DDIDHFDSLPDSILLLIFNQIADVKALGRCCLVSKRFHFLVPQVDNILVRVDCVISDDDSSGGSSSSSSVSKSHTPFSSLFRFVFGGIVKPLQSLTQFLQFKRSVNGTGFAASSSSLSVNGEDYDELDQGG----VTHHSPTQVLKNFNEIKILRIELPSGELGVDDGVLLKWRADFGSTLDNCVILGASSVM---PSKGL---DGNGVNLINE-------DDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIISEHKTLDSLVLTDGDGQGVLCMNREQLEELRVKPLSASSASKRTLVPALNMRLWYAPHLELPDGTVLKGATLVAIRPSEQSVVKKEVA-DGSWVSSAFEEPYGTAAKMLIKRRTYCLEMNSF 385
R DLA KI+PEP + IDHFD LPDS+LLL+FN+I DVKALGRCC+VS+RFH LVPQV+N++VRVDCVISDDD+S + SS KS FS+LFR V GGIVKPLQ+L QFL KRS ++SSSL+V D VTHHSPTQVLKNFNEI+ LRIELPSGELG+DDGVLLKWRADFGSTLDNCVILGASSV+ P+K L D NG DDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPII+EH+TLDSLVLTD DGQGVLCMNR+QLEELRVKPLSASSASKRTLVPALNMRLWYAPHLELPDGTVLKGATLVAIRPSEQS VKK+VA DGSWVSSAFEEPYGTAAKML+KRRTYCLEMNSF
Sbjct: 5 RPDLATKIYPEPYSYTPISGIDHFDRLPDSLLLLVFNKIGDVKALGRCCVVSRRFHSLVPQVENVVVRVDCVISDDDASSAAGSSD---KSRGAFSNLFRLVLGGIVKPLQALGQFLGPKRS------NSASSSLAVGSGAPGGDDDDLDQGGVTHHSPTQVLKNFNEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGASSVINPEPTKCLSSQDNNGDGFCGNSNTGGSGDDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIAEHRTLDSLVLTDADGQGVLCMNRDQLEELRVKPLSASSASKRTLVPALNMRLWYAPHLELPDGTVLKGATLVAIRPSEQSAVKKDVAVDGSWVSSAFEEPYGTAAKMLVKRRTYCLEMNSF 397
| Match Name | Stats | Description |
|---|---|---|
| A0A5B6ZYP1 | E-Value: 0.000e+0, PID: 77.02 | (Uncharacterized protein {ECO:0000313|EMBL:MPA4859... [more] |
| A0A5B7A0K6 | E-Value: 0.000e+0, PID: 76.77 | (Uncharacterized protein {ECO:0000313|EMBL:MPA4859... [more] |
| A0A5B6ZYP8 | E-Value: 0.000e+0, PID: 76.77 | (Uncharacterized protein {ECO:0000313|EMBL:MPA4860... [more] |
| F6HLT5 | E-Value: 0.000e+0, PID: 75.87 | (Uncharacterized protein {ECO:0000313|EMBL:CCB5580... [more] |
| A0A438HZN5 | E-Value: 0.000e+0, PID: 75.87 | (F-box protein {ECO:0000313|EMBL:RVW89923.1})[more] |
| A5ATM2 | E-Value: 0.000e+0, PID: 75.62 | (Uncharacterized protein {ECO:0000313|EMBL:CAN7377... [more] |
| A0A4S4DMP5 | E-Value: 0.000e+0, PID: 76.90 | (Uncharacterized protein {ECO:0000313|EMBL:THG0427... [more] |
| A0A6P5WXM4 | E-Value: 0.000e+0, PID: 73.07 | (F-box protein At5g46170-like {ECO:0000313|RefSeq:... [more] |
| A0A7J7CQF7 | E-Value: 0.000e+0, PID: 75.62 | (F-box protein {ECO:0000313|EMBL:KAF5736342.1})[more] |
| A0A5B6ZVQ6 | E-Value: 0.000e+0, PID: 75.12 | (Uncharacterized protein {ECO:0000313|EMBL:MPA4859... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |