Resource Type:
Polypeptide
Name:
XM_017364914.1
Identifier:
XM_017364914.1-protein
Sequence:
MSIVAGSYERFIWGFKLKQLKNSPQSLTLTPLFSFPSHISPIKSVAVSGS
AAVSGGSDDTIKIYDLSTSSEIGSLNDPTSTVTSLSFVSLDSSFPRNLLA
GFDDGSVSIYDADPFVLLKNFSVHKKGINDLSVHKTGTLALSVGRDCCLG
MVNLVRGRRSFYCRLGKEASVVRFDGSGEKFFMVMDEKVSVHQAEDAKLV
LELENQKKVLCAAPGNNGVLFTGGEDKNITAWDTTTGKVAYCIEDAHSAR
VKGIVVLSKSDGAGDDDPYIVASASSDGIVRVWDIRVVGKEKTDPLAEAN
TKSRLTCLAGSSIKSFKTPQVGKTNKSEDQDASE
Sequence Length:
334
Sequence Checksum:
8afcae1d434ffbafd887eae8da51ade6
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017364914.1, derives from mRNA, XM_017364914.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017364914.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017364914.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A103XUY4 ((G-protein beta WD-40 repeat-containing protein {ECO:0000313|EMBL:KVH97385.1}))
HSP 1 Score: 514.612 bits (1324), Expect = 0.000e+0
Identity = 242/319 (75.86%), Postives = 283/319 (88.71%), Query Frame = 0
Match: A0A103XUY4 ((G-protein beta WD-40 repeat-containing protein {ECO:0000313|EMBL:KVH97385.1}))
HSP 1 Score: 514.612 bits (1324), Expect = 0.000e+0
Identity = 242/319 (75.86%), Postives = 283/319 (88.71%), Query Frame = 0
Query: 1 MSIVAGSYERFIWGFKLKQLKNSPQSLTLTPLFSFPSHISPIKSVAVSGSAAVSGGSDDTIKIYDLSTSSEIGSLNDPTSTVTSLSFVSLDS--SFPRNLLAGFDDGSVSIYDADPFVLLKNFSVHKKGINDLSVHKTGTLALSVGRDCCLGMVNLVRGRRSFYCRLGKEASVVRFDGSGEKFFMVMDEKVSVHQAEDAKLVLELENQKKVLCAAPGNNGVLFTGGEDKNITAWDTTTGKVAYCIEDAHSARVKGIVVLSKSDGAGDDDPYIVASASSDGIVRVWDIRVVGKEKTDPLAEANTKSRLTCLAGSSIKSFK 317
MS+VAGSYERFIWGFKLK LK+S ++LTL+P+FSFPSH+SPIK VAV+G+ AVSGGSDDTIKIYDLSTSSE+GSLNDPT+TVTSLS + S SFPRNL + +DDG++S YDADPFV LK +HKKG+ND+SVH +G LAL+VGRD CL MVNLVRGRRSFYC++GKEASVV+FD SG+KFFM MDEK+SVH+AEDAKL++ELE KKVLC APG NG+L+TGGEDKN+TAWDT +GKVAYCIEDAHSAR+KGIVVLSK DG DD+P++VASASSDGI+RVWD+R+ K K +PLAEANTKSRLTCLAGSSIKS K
Sbjct: 1 MSLVAGSYERFIWGFKLKTLKHSTETLTLSPIFSFPSHLSPIKCVAVAGTVAVSGGSDDTIKIYDLSTSSEVGSLNDPTATVTSLSLFTPPSLSSFPRNLFSAYDDGNISFYDADPFVHLKTLKIHKKGVNDMSVHPSGKLALTVGRDSCLAMVNLVRGRRSFYCKMGKEASVVKFDCSGDKFFMGMDEKISVHEAEDAKLIVELEANKKVLCIAPGMNGLLYTGGEDKNLTAWDTVSGKVAYCIEDAHSARLKGIVVLSKIDGTSDDEPFLVASASSDGIIRVWDVRMANKAKPNPLAEANTKSRLTCLAGSSIKSMK 319
BLAST of XM_017364914.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A1G0 ((Putative p21-activated protein kinase-interacting protein 1-like {ECO:0000313|EMBL:MPA50469.1}) (Fragment))
HSP 1 Score: 512.686 bits (1319), Expect = 0.000e+0
Identity = 256/335 (76.42%), Postives = 302/335 (90.15%), Query Frame = 0
Match: A0A5B7A1G0 ((Putative p21-activated protein kinase-interacting protein 1-like {ECO:0000313|EMBL:MPA50469.1}) (Fragment))
HSP 1 Score: 512.686 bits (1319), Expect = 0.000e+0
Identity = 256/335 (76.42%), Postives = 302/335 (90.15%), Query Frame = 0
Query: 1 MSIVAGSYERFIWGFKLKQLKNSPQSLTLTPLFSFPSHISPIKSVAVSGSAAVSGGSDDTIKIYDLSTSSEIGSLNDPTSTVTSLSFVSLDS-SFPRNLLAGFDDGSVSIYDADPFVLLKNFSVHKKGINDLSVHKTGTLALSVGRDCCLGMVNLVRGRRSFYCRLGKEASVVRFDGSGEKFFMVMDEKVSVHQAEDAKLVLELENQKKVLCAAPGNNGVLFTGGEDKNITAWDTTTGKVAYCIEDAHSARVKGIVVLSKSDGA-GDDDPYIVASASSDGIVRVWDIRVVGKEKTDPLAEANTKSRLTCLAGSSIKSFKTPQVGKTNKSEDQDAS 333
MS+VAGSYERFIWGFKLK LK++ Q+LTLTPLFSFPSH+SPIK+VAV+GSAAVSGG+DDTIKIYDLSTSSEIG+L D ++++T+LSF + S SFPRNLL+ DDG+V +YDADPFV LK + HKKGINDLSVH +G LAL+VGRD CL M+NLVRGRRSFYCRLGKEAS+V+FD G+KF+MVMDEKVS+H++EDA+LV EL+NQKKVLCAAPG NGVLFTGGED+NITAWDTT+GKVAYCIEDAHSARVKGIVVLSKSDGA DDDPY+VASASSDG++RVWD+R+V KEK +PL EANTKSRLTCLAGS +KS + PQVG N++++QDA+
Sbjct: 8 MSLVAGSYERFIWGFKLKTLKHT-QTLTLTPLFSFPSHLSPIKAVAVAGSAAVSGGADDTIKIYDLSTSSEIGTLTDHSASITALSFFTPPSLSFPRNLLSASDDGAVCLYDADPFVHLKTVTAHKKGINDLSVHPSGKLALTVGRDSCLAMLNLVRGRRSFYCRLGKEASIVKFDLGGDKFYMVMDEKVSIHESEDARLVFELDNQKKVLCAAPGTNGVLFTGGEDRNITAWDTTSGKVAYCIEDAHSARVKGIVVLSKSDGASADDDPYLVASASSDGVIRVWDVRMVTKEKPNPLTEANTKSRLTCLAGSFLKSVRRPQVGNNNQNKEQDAA 341
BLAST of XM_017364914.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6S7MS28 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4090805.1}))
HSP 1 Score: 512.301 bits (1318), Expect = 0.000e+0
Identity = 241/333 (72.37%), Postives = 291/333 (87.39%), Query Frame = 0
Match: A0A6S7MS28 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4090805.1}))
HSP 1 Score: 512.301 bits (1318), Expect = 0.000e+0
Identity = 241/333 (72.37%), Postives = 291/333 (87.39%), Query Frame = 0
Query: 1 MSIVAGSYERFIWGFKLKQLKNSPQSLTLTPLFSFPSHISPIKSVAVSGSAAVSGGSDDTIKIYDLSTSSEIGSLNDPTSTVTSLSFVSLDS--SFPRNLLAGFDDGSVSIYDADPFVLLKNFSVHKKGINDLSVHKTGTLALSVGRDCCLGMVNLVRGRRSFYCRLGKEASVVRFDGSGEKFFMVMDEKVSVHQAEDAKLVLELENQKKVLCAAPGNNGVLFTGGEDKNITAWDTTTGKVAYCIEDAHSARVKGIVVLSKSDGAGDDDPYIVASASSDGIVRVWDIRVVGKEKTDPLAEANTKSRLTCLAGSSIKSFKTPQVGKTNKSEDQD 331
MS+VAGSYERFIWGFKLK LK+S ++LTL+P+FSFPSH+SPIKSVAV+GS AVSGGSDDTIKIYDLSTSSE+GSLNDPT+TVTSL+ + S SFPRNL + +DDG++S+YDADPFV LK +HKKG+NDLSVH +G LAL+VGRD CL MVNLVRGRRSF C LGKEAS+V+FD SG+KFFMVMDEK+SVH+AEDAKL+LELE++KKVLC APG NG+++ GGED+N+TAWDT +GKVAYCIEDAHS+R+KGIVVLSK DGA +D+ ++VASASSDGI+RVWD+R+ K K+ PLAE NTKSRLTCLAGSS+KS K P + S+++D
Sbjct: 1 MSLVAGSYERFIWGFKLKTLKHSTETLTLSPIFSFPSHLSPIKSVAVAGSVAVSGGSDDTIKIYDLSTSSEVGSLNDPTATVTSLALYTPPSLSSFPRNLFSAYDDGNISLYDADPFVHLKTMKIHKKGVNDLSVHPSGKLALTVGRDSCLAMVNLVRGRRSFCCSLGKEASMVKFDCSGDKFFMVMDEKISVHEAEDAKLILELESKKKVLCIAPGMNGLVYGGGEDRNLTAWDTVSGKVAYCIEDAHSSRLKGIVVLSKIDGASEDELFLVASASSDGIIRVWDVRMANKNKSIPLAEVNTKSRLTCLAGSSVKSIKKPLADSSKSSKEED 333
BLAST of XM_017364914.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2J6L8H2 ((Uncharacterized protein {ECO:0000313|EMBL:PLY83629.1}))
HSP 1 Score: 511.146 bits (1315), Expect = 0.000e+0
Identity = 241/333 (72.37%), Postives = 290/333 (87.09%), Query Frame = 0
Match: A0A2J6L8H2 ((Uncharacterized protein {ECO:0000313|EMBL:PLY83629.1}))
HSP 1 Score: 511.146 bits (1315), Expect = 0.000e+0
Identity = 241/333 (72.37%), Postives = 290/333 (87.09%), Query Frame = 0
Query: 1 MSIVAGSYERFIWGFKLKQLKNSPQSLTLTPLFSFPSHISPIKSVAVSGSAAVSGGSDDTIKIYDLSTSSEIGSLNDPTSTVTSLSFVSLDS--SFPRNLLAGFDDGSVSIYDADPFVLLKNFSVHKKGINDLSVHKTGTLALSVGRDCCLGMVNLVRGRRSFYCRLGKEASVVRFDGSGEKFFMVMDEKVSVHQAEDAKLVLELENQKKVLCAAPGNNGVLFTGGEDKNITAWDTTTGKVAYCIEDAHSARVKGIVVLSKSDGAGDDDPYIVASASSDGIVRVWDIRVVGKEKTDPLAEANTKSRLTCLAGSSIKSFKTPQVGKTNKSEDQD 331
MS+VAGSYERFIWGFKLK LK+S ++LTL+P+FSFPSH+SPIKSVAV+GS AVSGGSDDTIKIYDLSTSSE+GSLNDPT+TVTSL+ + S SFPRNL + +DDG++S+YDADPFV LK +HKKG+NDLSVH +G LAL+VGRD CL MVNLVRGRRSF C LGKEAS+V+FD SG+KFFMVMDEK+SVH+AEDAKL+LELE++KKVLC APG NG+++ GGED+N+TAWDT +GKVAYCIEDAHS R+KGIVVLSK DGA +D+ ++VASASSDGI+RVWD+R+ K K+ PLAE NTKSRLTCLAGSS+KS K P + S+++D
Sbjct: 1 MSLVAGSYERFIWGFKLKTLKHSTETLTLSPIFSFPSHLSPIKSVAVAGSVAVSGGSDDTIKIYDLSTSSEVGSLNDPTATVTSLALYTPPSLSSFPRNLFSAYDDGNISLYDADPFVHLKTMKIHKKGVNDLSVHPSGKLALTVGRDSCLAMVNLVRGRRSFCCSLGKEASMVKFDCSGDKFFMVMDEKISVHEAEDAKLILELESKKKVLCIAPGMNGLVYGGGEDRNLTAWDTVSGKVAYCIEDAHSYRLKGIVVLSKIDGASEDELFLVASASSDGIIRVWDVRMANKNKSIPLAEVNTKSRLTCLAGSSVKSIKRPLADSSKSSKEED 333
BLAST of XM_017364914.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A0Z1 ((Putative p21-activated protein kinase-interacting protein 1-like {ECO:0000313|EMBL:MPA50470.1}) (Fragment))
HSP 1 Score: 506.908 bits (1304), Expect = 1.429e-179
Identity = 256/335 (76.42%), Postives = 301/335 (89.85%), Query Frame = 0
Match: A0A5B7A0Z1 ((Putative p21-activated protein kinase-interacting protein 1-like {ECO:0000313|EMBL:MPA50470.1}) (Fragment))
HSP 1 Score: 506.908 bits (1304), Expect = 1.429e-179
Identity = 256/335 (76.42%), Postives = 301/335 (89.85%), Query Frame = 0
Query: 1 MSIVAGSYERFIWGFKLKQLKNSPQSLTLTPLFSFPSHISPIKSVAVSGSAAVSGGSDDTIKIYDLSTSSEIGSLNDPTSTVTSLSFVSLDS-SFPRNLLAGFDDGSVSIYDADPFVLLKNFSVHKKGINDLSVHKTGTLALSVGRDCCLGMVNLVRGRRSFYCRLGKEASVVRFDGSGEKFFMVMDEKVSVHQAEDAKLVLELENQKKVLCAAPGNNGVLFTGGEDKNITAWDTTTGKVAYCIEDAHSARVKGIVVLSKSDG-AGDDDPYIVASASSDGIVRVWDIRVVGKEKTDPLAEANTKSRLTCLAGSSIKSFKTPQVGKTNKSEDQDAS 333
MS+VAGSYERFIWGFKLK LK++ Q+LTLTPLFSFPSH+SPIK+VAV+GSAAVSGG+DDTIKIYDLSTSSEIG+L D +S+VT+LSF + S SFPRNLL+ DDG+V IYDADPFV LK S HKKGINDLSVH +G LAL+VGRD C M+NLVRG+RSFYCRLGKEAS+V+FD G+KF+MVMDEKVSVH++EDA+LVLEL+N K+VLCAAPG NGVLFTGGED+NITAWDTT+GKVAYCIEDAHSARVKGIVVLSKSDG + DDDPY+VASASSDG++RVWD+R+ KEK +PLAEANTKSRLTCLAGS +KS + P+VG N++++QDA+
Sbjct: 13 MSLVAGSYERFIWGFKLKTLKHT-QNLTLTPLFSFPSHLSPIKAVAVAGSAAVSGGADDTIKIYDLSTSSEIGTLTDHSSSVTALSFYTPASLSFPRNLLSASDDGAVCIYDADPFVHLKTVSAHKKGINDLSVHPSGKLALTVGRDSCFAMLNLVRGKRSFYCRLGKEASIVKFDLGGDKFYMVMDEKVSVHESEDARLVLELDNHKRVLCAAPGMNGVLFTGGEDRNITAWDTTSGKVAYCIEDAHSARVKGIVVLSKSDGISADDDPYLVASASSDGVIRVWDVRMATKEKPNPLAEANTKSRLTCLAGSFLKSVRRPEVGNNNQNKEQDAA 346
BLAST of XM_017364914.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A3L8 ((Putative p21-activated protein kinase-interacting protein 1-like {ECO:0000313|EMBL:MPA50468.1}) (Fragment))
HSP 1 Score: 506.523 bits (1303), Expect = 2.119e-179
Identity = 254/335 (75.82%), Postives = 301/335 (89.85%), Query Frame = 0
Match: A0A5B7A3L8 ((Putative p21-activated protein kinase-interacting protein 1-like {ECO:0000313|EMBL:MPA50468.1}) (Fragment))
HSP 1 Score: 506.523 bits (1303), Expect = 2.119e-179
Identity = 254/335 (75.82%), Postives = 301/335 (89.85%), Query Frame = 0
Query: 1 MSIVAGSYERFIWGFKLKQLKNSPQSLTLTPLFSFPSHISPIKSVAVSGSAAVSGGSDDTIKIYDLSTSSEIGSLNDPTSTVTSLSFVSLDS-SFPRNLLAGFDDGSVSIYDADPFVLLKNFSVHKKGINDLSVHKTGTLALSVGRDCCLGMVNLVRGRRSFYCRLGKEASVVRFDGSGEKFFMVMDEKVSVHQAEDAKLVLELENQKKVLCAAPGNNGVLFTGGEDKNITAWDTTTGKVAYCIEDAHSARVKGIVVLSKSDG-AGDDDPYIVASASSDGIVRVWDIRVVGKEKTDPLAEANTKSRLTCLAGSSIKSFKTPQVGKTNKSEDQDAS 333
MS+VAGSYERFIWGFKLK LK++ Q+LTLTPLFSFPSH+SPIK+VAV+GSAAVSGG+DDTIKIYDLSTSSEIG+L D ++++T+LSF + S SFPRNLL+ DDG+V +YDADPFV LK S HKKGINDLSVH +G LAL+VGRD C M+NLVRG+RSFYCRLGKEAS+V+FD G+KF+MVMDEKVSVH++EDA+LVLEL+N K+VLCAAPG NGVLFTGGED+NITAWDTT+GKVAYCIEDAHSARVKGIVVLSKSDG + DDDPY+VASASSDG++RVWD+R+ KEK +PLAEANTKSRLTCLAGS +KS + PQVG N++++QDA+
Sbjct: 13 MSLVAGSYERFIWGFKLKTLKHT-QTLTLTPLFSFPSHLSPIKAVAVAGSAAVSGGADDTIKIYDLSTSSEIGTLTDHSASITALSFFTPPSLSFPRNLLSASDDGAVCLYDADPFVHLKTVSAHKKGINDLSVHPSGKLALTVGRDSCFAMLNLVRGKRSFYCRLGKEASIVKFDLGGDKFYMVMDEKVSVHESEDARLVLELDNHKRVLCAAPGMNGVLFTGGEDRNITAWDTTSGKVAYCIEDAHSARVKGIVVLSKSDGISADDDPYLVASASSDGVIRVWDVRMATKEKPNPLAEANTKSRLTCLAGSFLKSVRRPQVGNNNQNKEQDAA 346
BLAST of XM_017364914.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: D7THM7 ((Uncharacterized protein {ECO:0000313|EMBL:CBI30543.3}))
HSP 1 Score: 496.893 bits (1278), Expect = 9.364e-176
Identity = 245/334 (73.35%), Postives = 287/334 (85.93%), Query Frame = 0
Match: D7THM7 ((Uncharacterized protein {ECO:0000313|EMBL:CBI30543.3}))
HSP 1 Score: 496.893 bits (1278), Expect = 9.364e-176
Identity = 245/334 (73.35%), Postives = 287/334 (85.93%), Query Frame = 0
Query: 1 MSIVAGSYERFIWGFKLKQLKNSPQSLTLTPLFSFPSHISPIKSVAVSGSAAVSGGSDDTIKIYDLSTSSEIGSLNDPTSTVTSLSFVSLDSSFP-RNLLAGFDDGSVSIYDADPFVLLKNFSVHKKGINDLSVHKTGTLALSVGRDCCLGMVNLVRGRRSFYCRLGKEASVVRFDGSGEKFFMVMDEKVSVHQAEDAKLVLELENQKKVLCAAPGNNGVLFTGGEDKNITAWDTTTGKVAYCIEDAHSARVKGIVVLSKSD-GAGDDDPYIVASASSDGIVRVWDIRVVGKEKTDPLAEANTKSRLTCLAGSSIKSFKTPQVGKTNKSEDQDA 332
MSIVAGSYE+FIWGFKLK LK S Q+LTLTPLFS+PSH+SPIKSVAV+G A SGG+DD++K+YDLS+ SEIG+L D + VTSLSF S S RNLL+ DDGSV IYDADPFV LK + HKKG+NDLS+H +G LAL+VGRD CL M+NLVRGRRSFYCRLGKEAS+V+FD SG+KF+MVM+EKV VH+AEDAKLV E+EN K+VLCAAPG+NG+LFTGGED+NITAWDT +GKVAYCIEDAHSARVKGIVVLS++D G DDDPY+VASASSDG++RVWDIR+ +EK +PLAEANTKSRLTCLAGSS+KSFK PQV ++QDA
Sbjct: 1 MSIVAGSYEKFIWGFKLKSLKKS-QTLTLTPLFSYPSHLSPIKSVAVAGPVAASGGTDDSVKVYDLSSCSEIGTLTDHSGAVTSLSFFSPSSLSFPRNLLSASDDGSVCIYDADPFVHLKTIAAHKKGVNDLSIHPSGKLALTVGRDSCLAMLNLVRGRRSFYCRLGKEASLVKFDLSGDKFYMVMEEKVCVHEAEDAKLVFEMENPKRVLCAAPGSNGLLFTGGEDRNITAWDTASGKVAYCIEDAHSARVKGIVVLSRNDSGTADDDPYMVASASSDGVIRVWDIRMANREKPNPLAEANTKSRLTCLAGSSLKSFKGPQVVSNAPKKEQDA 333
BLAST of XM_017364914.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251RTI7 ((Putative transducin/WD40 repeat-like superfamily protein {ECO:0000313|EMBL:OTF87686.1}))
HSP 1 Score: 496.123 bits (1276), Expect = 1.994e-175
Identity = 238/333 (71.47%), Postives = 281/333 (84.38%), Query Frame = 0
Match: A0A251RTI7 ((Putative transducin/WD40 repeat-like superfamily protein {ECO:0000313|EMBL:OTF87686.1}))
HSP 1 Score: 496.123 bits (1276), Expect = 1.994e-175
Identity = 238/333 (71.47%), Postives = 281/333 (84.38%), Query Frame = 0
Query: 1 MSIVAGSYERFIWGFKLKQLKNSPQSLTLTPLFSFPSHISPIKSVAVSGSAAVSGGSDDTIKIYDLSTSSEIGSLNDPTSTVTSLSFVSLDS--SFPRNLLAGFDDGSVSIYDADPFVLLKNFSVHKKGINDLSVHKTGTLALSVGRDCCLGMVNLVRGRRSFYCRLGKEASVVRFDGSGEKFFMVMDEKVSVHQAEDAKLVLELENQKKVLCAAPGNNGVLFTGGEDKNITAWDTTTGKVAYCIEDAHSARVKGIVVLSKSDGAGDDDPYIVASASSDGIVRVWDIRVVGKEKTDPLAEANTKSRLTCLAGSSIKSFKTPQVGKTNKSEDQD 331
MS+VAGSYERFIWGFKLK LK+S ++LTL+PLFSFPSH+SPIKSVAV+GS AVSGGSDDTIKIYDLSTSSEIGSLNDPTSTVTSL + S SFPRNL + +DDG VS YDADPFV LK VHKKG+ND+SVH +G L L+VGRD CLGM+NLVRGRRSF+C+LGKEA +V F G+KFFM E VSVH+AEDAKLV EL+ +K+VLC AP NG+++TGGED+N+TAWDT +GKVAYCIEDAHSAR+KGIVVLSK DG D++P++VASASSDGI+RVWD+R+ K+K PLAEANTKSRLTCLAGSS KS K G ++ +++QD
Sbjct: 1 MSLVAGSYERFIWGFKLKTLKHSTETLTLSPLFSFPSHLSPIKSVAVAGSVAVSGGSDDTIKIYDLSTSSEIGSLNDPTSTVTSLVLYTPPSLHSFPRNLFSAYDDGHVSFYDADPFVHLKTLKVHKKGVNDMSVHPSGKLGLTVGRDECLGMINLVRGRRSFFCKLGKEAEIVEFGCGGDKFFMGTGETVSVHEAEDAKLVSELKGEKRVLCLAPATNGLVYTGGEDRNLTAWDTISGKVAYCIEDAHSARLKGIVVLSKIDGTSDEEPFLVASASSDGIIRVWDVRMAKKDKPTPLAEANTKSRLTCLAGSSFKSMKKRFSGSSDSNKEQD 333
BLAST of XM_017364914.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438HSG2 ((p21-activated protein kinase-interacting protein 1-like {ECO:0000313|EMBL:RVW87403.1}))
HSP 1 Score: 496.123 bits (1276), Expect = 1.660e-174
Identity = 245/334 (73.35%), Postives = 287/334 (85.93%), Query Frame = 0
Match: A0A438HSG2 ((p21-activated protein kinase-interacting protein 1-like {ECO:0000313|EMBL:RVW87403.1}))
HSP 1 Score: 496.123 bits (1276), Expect = 1.660e-174
Identity = 245/334 (73.35%), Postives = 287/334 (85.93%), Query Frame = 0
Query: 1 MSIVAGSYERFIWGFKLKQLKNSPQSLTLTPLFSFPSHISPIKSVAVSGSAAVSGGSDDTIKIYDLSTSSEIGSLNDPTSTVTSLSFVSLDSSFP-RNLLAGFDDGSVSIYDADPFVLLKNFSVHKKGINDLSVHKTGTLALSVGRDCCLGMVNLVRGRRSFYCRLGKEASVVRFDGSGEKFFMVMDEKVSVHQAEDAKLVLELENQKKVLCAAPGNNGVLFTGGEDKNITAWDTTTGKVAYCIEDAHSARVKGIVVLSKSD-GAGDDDPYIVASASSDGIVRVWDIRVVGKEKTDPLAEANTKSRLTCLAGSSIKSFKTPQVGKTNKSEDQDA 332
MSIVAGSYE+FIWGFKLK LK S Q+LTLTPLFS+PSH+SPIKSVAV+G A SGG+DD++K+YDLS+ SEIG+L D + VTSLSF S S RNLL+ DDGSV IYDADPFV LK + HKKG+NDLS+H +G LAL+VGRD CL M+NLVRGRRSFYCRLGKEAS+V+FD SG+KF+MVM+EKV VH+AEDAKLV E+EN K+VLCAAPG+NG+LFTGGED+NITAWDT +GKVAYCIEDAHSARVKGIVVLS++D G DDDPY+VASASSDG++RVWDIR+ +EK +PLAEANTKSRLTCLAGSS+KSFK PQV ++QDA
Sbjct: 1 MSIVAGSYEKFIWGFKLKSLKKS-QTLTLTPLFSYPSHLSPIKSVAVAGPVAASGGTDDSVKVYDLSSCSEIGTLTDHSGAVTSLSFFSPSSLSFPRNLLSASDDGSVCIYDADPFVHLKTIAAHKKGVNDLSIHPSGKLALTVGRDSCLAMLNLVRGRRSFYCRLGKEASLVKFDLSGDKFYMVMEEKVCVHEAEDAKLVFEMENPKRVLCAAPGSNGLLFTGGEDRNITAWDTASGKVAYCIEDAHSARVKGIVVLSRNDSGTADDDPYMVASASSDGVIRVWDIRMANREKPNPLAEANTKSRLTCLAGSSLKSFKGPQVVSNAPKKEQDA 333
BLAST of XM_017364914.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZAD6 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8514899.1}))
HSP 1 Score: 491.115 bits (1263), Expect = 2.561e-173
Identity = 250/316 (79.11%), Postives = 288/316 (91.14%), Query Frame = 0
Match: A0A5J4ZAD6 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8514899.1}))
HSP 1 Score: 491.115 bits (1263), Expect = 2.561e-173
Identity = 250/316 (79.11%), Postives = 288/316 (91.14%), Query Frame = 0
Query: 1 MSIVAGSYERFIWGFKLKQLKNSPQSLTLTPLFSFPSHISPIKSVAVSGSAAVSGGSDDTIKIYDLSTSSEIGSLNDPTSTVTSLSFVSLDS-SFPRNLLAGFDDGSVSIYDADPFVLLKNFSVHKKGINDLSVHKTGTLALSVGRDCCLGMVNLVRGRRSFYCRLGKEASVVRFDGSGEKFFMVMDEKVSVHQAEDAKLVLELENQKKVLCAAPGNNGVLFTGGEDKNITAWDTTTGKVAYCIEDAHSARVKGIVVLSKSDG-AGDDDPYIVASASSDGIVRVWDIRVVGKEKTDPLAEANTKSRLTCLAGSSIK 314
MS+VAGSYERFIWGFKLK LK++ Q+LTLTPLFSFPSH+SPIK+VAV+GSAAVSGG+DDTIKIYDLSTSSEIG+L D +++VT+LSF + S SFPRNLL+ DDG+V IYDADPFV LK S HKKGINDLSVH +G LAL+VGRD CL M+NLVRGRRSFYCRLG+EAS+V+FD G+KFFMVMDEKVSVH++EDA+LVLELENQK+VLCAAPG NG+LFTGGED+N+TAWDT +GKVAYCIEDAHSARVKGIVVLSKSDG + DDDPY+VASASSDGI+RVWD+R+ KEK +PLAEANTKSRLTCLAGSS+K
Sbjct: 1 MSLVAGSYERFIWGFKLKTLKHT-QTLTLTPLFSFPSHLSPIKAVAVAGSAAVSGGADDTIKIYDLSTSSEIGTLTDHSASVTALSFFTPPSLSFPRNLLSASDDGAVCIYDADPFVHLKTVSAHKKGINDLSVHPSGKLALTVGRDSCLAMLNLVRGRRSFYCRLGREASIVKFDLGGDKFFMVMDEKVSVHESEDARLVLELENQKRVLCAAPGTNGLLFTGGEDRNVTAWDTASGKVAYCIEDAHSARVKGIVVLSKSDGVSADDDPYLVASASSDGIIRVWDVRMATKEKPNPLAEANTKSRLTCLAGSSLK 315
| Match Name | Stats | Description |
|---|---|---|
| A0A103XUY4 | E-Value: 0.000e+0, PID: 75.86 | (G-protein beta WD-40 repeat-containing protein {E... [more] |
| A0A5B7A1G0 | E-Value: 0.000e+0, PID: 76.42 | (Putative p21-activated protein kinase-interacting... [more] |
| A0A6S7MS28 | E-Value: 0.000e+0, PID: 72.37 | (Uncharacterized protein {ECO:0000313|EMBL:CAB4090... [more] |
| A0A2J6L8H2 | E-Value: 0.000e+0, PID: 72.37 | (Uncharacterized protein {ECO:0000313|EMBL:PLY8362... [more] |
| A0A5B7A0Z1 | E-Value: 1.429e-179, PID: 76.42 | (Putative p21-activated protein kinase-interacting... [more] |
| A0A5B7A3L8 | E-Value: 2.119e-179, PID: 75.82 | (Putative p21-activated protein kinase-interacting... [more] |
| D7THM7 | E-Value: 9.364e-176, PID: 73.35 | (Uncharacterized protein {ECO:0000313|EMBL:CBI3054... [more] |
| A0A251RTI7 | E-Value: 1.994e-175, PID: 71.47 | (Putative transducin/WD40 repeat-like superfamily ... [more] |
| A0A438HSG2 | E-Value: 1.660e-174, PID: 73.35 | (p21-activated protein kinase-interacting protein ... [more] |
| A0A5J4ZAD6 | E-Value: 2.561e-173, PID: 79.11 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8514... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |