Resource Type:
Polypeptide
Name:
XM_017366117.1
Identifier:
XM_017366117.1-protein
Sequence:
MEKYKIIKEVGSGSFGSVFKAMNTQSGEVVAIKRLNKEFDSWEDCLNLRE
VKSLKKMHHANIVKLKEIIGENNFLFFVFEYMECNLYQVMSTRTKPFSET
DVRNWCFQVFQGLAYMHERGYFHRDLKPENLLVSGDIIKIADLGLAREIN
CSPPYSEYVATRWYRAPEILLAAPIYGPAVDMWAMGAIMAELLTNCPLFA
GVNQQDQMYRICSVLGTPTEVDWAYGMELADDISYQFPQHSGVSLSQLMP
SASKDVVGLIQSLCSWDPCKRPTALEALQHPFLRSCYYVPPGFRFKTSGL
GMNLSARSEGSVKHKYLSRIPGTFSNSGPIRCAP
Sequence Length:
334
Sequence Checksum:
209a88650fffe28de17ac868121dc6c3
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017366117.1, derives from mRNA, XM_017366117.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017366117.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017366117.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZT61 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 483.411 bits (1243), Expect = 1.226e-168
Identity = 218/326 (66.87%), Postives = 270/326 (82.82%), Query Frame = 0
Match: A0A5J4ZT61 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 483.411 bits (1243), Expect = 1.226e-168
Identity = 218/326 (66.87%), Postives = 270/326 (82.82%), Query Frame = 0
Query: 1 MEKYKIIKEVGSGSFGSVFKAMNTQSGEVVAIKRLNKEFDSWEDCLNLREVKSLKKMHHANIVKLKEIIGENNFLFFVFEYMECNLYQVMSTRTKPFSETDVRNWCFQVFQGLAYMHERGYFHRDLKPENLLVSGDIIKIADLGLAREINCSPPYSEYVATRWYRAPEILLAAPIYGPAVDMWAMGAIMAELLTNCPLFAGVNQQDQMYRICSVLGTPTEVDWAYGMELADDISYQFPQHSGVSLSQLMPSASKDVVGLIQSLCSWDPCKRPTALEALQHPFLRSCYYVPPGFRFKTSGLGMNLSARSEGSVKHKYLSRIPGTFSN 326
ME+YKIIKEVG G+FGSV++A+N Q+GEVVAIK++ +++ SWE+C+NLREVKSL+KM+H NIVKLKE+I E++ L+FVFEYMECNLYQ+M R K FSE ++RNWCFQVFQGLAYMH+RGYFHRDLKPENLLVS DIIKIAD GLAREI+ PPY+EYV+TRWYRAPE+LL +P Y AVDMWAMGAIMAEL + CPLF G ++ D++Y+ICSV+GTPTE +WA G++LA I+YQFPQ +G LS L+PSAS+D + L+ SLCSWDPCKRPTALEALQHPF +SC+Y+PP R KT+ S + G+++ KY R GT N
Sbjct: 1 MERYKIIKEVGDGTFGSVWRAINKQTGEVVAIKKMKRKYYSWEECINLREVKSLRKMNHPNIVKLKEVIREHDILYFVFEYMECNLYQLMKDRGKLFSEAEIRNWCFQVFQGLAYMHQRGYFHRDLKPENLLVSKDIIKIADFGLAREISSQPPYTEYVSTRWYRAPEVLLQSPTYNSAVDMWAMGAIMAELFSLCPLFPGSSEADEIYKICSVIGTPTENEWAGGLKLARAINYQFPQLTGTHLSTLIPSASEDAITLVTSLCSWDPCKRPTALEALQHPFFQSCFYIPPSLRSKTTVTRTPPSVGTRGALEQKYARRYCGTQPN 326
BLAST of XM_017366117.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1J6IBA2 ((Cyclin-dependent kinase f-4 {ECO:0000313|EMBL:OIS97807.1}))
HSP 1 Score: 483.411 bits (1243), Expect = 1.390e-168
Identity = 222/329 (67.48%), Postives = 273/329 (82.98%), Query Frame = 0
Match: A0A1J6IBA2 ((Cyclin-dependent kinase f-4 {ECO:0000313|EMBL:OIS97807.1}))
HSP 1 Score: 483.411 bits (1243), Expect = 1.390e-168
Identity = 222/329 (67.48%), Postives = 273/329 (82.98%), Query Frame = 0
Query: 1 MEKYKIIKEVGSGSFGSVFKAMNTQSGEVVAIKRLNKEFDSWEDCLNLREVKSLKKMHHANIVKLKEIIGENNFLFFVFEYMECNLYQVMSTRTKPFSETDVRNWCFQVFQGLAYMHERGYFHRDLKPENLLVSGDIIKIADLGLAREINCSPPYSEYVATRWYRAPEILLAAPIYGPAVDMWAMGAIMAELLTNCPLFAGVNQQDQMYRICSVLGTPTEVDWAYGMELADDISYQFPQHSGVSLSQLMPSASKDVVGLIQSLCSWDPCKRPTALEALQHPFLRSCYYVPPGFRFKTSGLGMNLSARSEGSVKHKYLSRIPGTFSNSGP 329
ME+YKIIKEVG+G+FGSV++A+N Q+GEVVAIK++ K++ SWE+C+NLREVKSL+KM H NIVKLKE+I EN+ L+FVFEYMECNLY +M R K F E++VRNWCFQ+FQGLAYMH+RGYFHRDLKPENLLVS D IKIAD GLAREIN PPY+EYV+TRWYRAPE+LL +PIYGPAVDMWAMGAIMAELLT PLF G ++ D++Y+ICSV+GTP++ +WA+G ELA+ I+YQFPQ +GV+LS L+PSAS+D V LI SLCSWDPCKRPTA+E LQH F +SC+Y+PP R K + SA +G+V+ K GT +NS P
Sbjct: 1 MERYKIIKEVGNGTFGSVWRALNKQTGEVVAIKKMKKKYYSWEECINLREVKSLRKMIHPNIVKLKEVIRENDILYFVFEYMECNLYHLMKDRPKLFLESEVRNWCFQIFQGLAYMHQRGYFHRDLKPENLLVSKDTIKIADFGLAREINSQPPYTEYVSTRWYRAPEVLLQSPIYGPAVDMWAMGAIMAELLTLRPLFPGSSEADEIYKICSVIGTPSKSEWAHGHELANSINYQFPQIAGVNLSLLLPSASEDAVNLITSLCSWDPCKRPTAVEVLQHRFFQSCFYIPPSLRSKAAVARTPPSAGMKGAVEQKTNRWSSGTITNSKP 329
BLAST of XM_017366117.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZGX0 ((Putative cyclin-dependent kinase F-4 {ECO:0000313|EMBL:MPA43677.1}) (2.7.11.22 {ECO:0000313|EMBL:MPA43677.1}))
HSP 1 Score: 481.871 bits (1239), Expect = 4.172e-168
Identity = 224/329 (68.09%), Postives = 267/329 (81.16%), Query Frame = 0
Match: A0A5B6ZGX0 ((Putative cyclin-dependent kinase F-4 {ECO:0000313|EMBL:MPA43677.1}) (2.7.11.22 {ECO:0000313|EMBL:MPA43677.1}))
HSP 1 Score: 481.871 bits (1239), Expect = 4.172e-168
Identity = 224/329 (68.09%), Postives = 267/329 (81.16%), Query Frame = 0
Query: 1 MEKYKIIKEVGSGSFGSVFKAMNTQSGEVVAIKRLNKEFDSWEDCLNLREVKSLKKMHHANIVKLKEIIGENNFLFFVFEYMECNLYQVMSTRTKPFSETDVRNWCFQVFQGLAYMHERGYFHRDLKPENLLVSGDIIKIADLGLAREINCSPPYSEYVATRWYRAPEILLAAPIYGPAVDMWAMGAIMAELLTNCPLFAGVNQQDQMYRICSVLGTPTEVDWAYGMELADDISYQFPQHSGVSLSQLMPSASKDVVGLIQSLCSWDPCKRPTALEALQHPFLRSCYYVPPGFRFKTSGLGMNLSARSEGSVKHKYLSRIPGTFSNSGP 329
ME+YKIIKEVG G+FGSV++A+N Q+GEVVAIK++ +++ SWE+C+NLREVKSL+KM+H NIVKLKE+I EN+ L+FVFEYMECNLYQ+M R K FSE +VRNWCFQVFQGLAYMH+RGYFHRDLKPENLLVS DI+KIAD GLAREI+ PPY+EYV+TRWYRAPE+LL +P Y AVDMWAMGAIMAEL T PLF G + D++Y+ICSV+GTPTE +WA G+ LA I+YQFPQ +GV LS L+PSASKD V LI SLCSWDPCKRPTALEALQHPF + C+YVPP R KT+ SA + G++ K GT SN P
Sbjct: 1 MERYKIIKEVGDGTFGSVWRAINKQTGEVVAIKKMKRKYYSWEECINLREVKSLRKMNHPNIVKLKEVIRENDILYFVFEYMECNLYQLMKDRGKLFSEAEVRNWCFQVFQGLAYMHQRGYFHRDLKPENLLVSKDILKIADFGLAREISSQPPYTEYVSTRWYRAPEVLLQSPTYNSAVDMWAMGAIMAELFTLRPLFPGSCEADEIYKICSVIGTPTESEWAEGLNLASAINYQFPQLTGVHLSILIPSASKDAVSLIASLCSWDPCKRPTALEALQHPFFQGCFYVPPSLRSKTAVTRTPPSAGTRGTLDQKCARWNSGTLSNLKP 329
BLAST of XM_017366117.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0GCV2 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 480.33 bits (1235), Expect = 5.498e-168
Identity = 220/329 (66.87%), Postives = 274/329 (83.28%), Query Frame = 0
Match: A0A7J0GCV2 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 480.33 bits (1235), Expect = 5.498e-168
Identity = 220/329 (66.87%), Postives = 274/329 (83.28%), Query Frame = 0
Query: 1 MEKYKIIKEVGSGSFGSVFKAMNTQSGEVVAIKRLNKEFDSWEDCLNLREVKSLKKMHHANIVKLKEIIGENNFLFFVFEYMECNLYQVMSTRTKPFSETDVRNWCFQVFQGLAYMHERGYFHRDLKPENLLVSGDIIKIADLGLAREINCSPPYSEYVATRWYRAPEILLAAPIYGPAVDMWAMGAIMAELLTNCPLFAGVNQQDQMYRICSVLGTPTEVDWAYGMELADDISYQFPQHSGVSLSQLMPSASKDVVGLIQSLCSWDPCKRPTALEALQHPFLRSCYYVPPGFRFKTSGLGMNLSARSEGSVKHKYLSRIPGTFSNSGP 329
ME+YKIIKEVG G+FGSV++A+N Q+GE+VAIK++ +++ SWE+C++LREVKSL+KM H NIVKLKE+I EN+ L+FVFEYMECNLYQ++ R K FSET+VRNWCFQVFQGLAY+H++GYFHRDLKPENLLVS +IIKIAD GLAREI+ PPY+EYV+TRWYRAPE+LL +P+Y AVDMWAMGAIMAEL T CPLF G ++ D++YRICSV+GTPTE+ WA G++LA I+YQFPQ +GV LS L+PSAS+D + LI+SLCSWDPCKRPTALEALQHPF +SC+Y+PP R K + SA + G + K + R GT S+S P
Sbjct: 1 MERYKIIKEVGDGTFGSVWRAINKQAGEIVAIKKMKRKYYSWEECISLREVKSLRKMSHPNIVKLKEVIRENDILYFVFEYMECNLYQLIKDRGKLFSETEVRNWCFQVFQGLAYIHQQGYFHRDLKPENLLVSKNIIKIADFGLAREISSQPPYTEYVSTRWYRAPEVLLQSPMYNSAVDMWAMGAIMAELFTLCPLFPGSSEADEIYRICSVIGTPTEIVWAEGLKLASAINYQFPQLTGVHLSVLVPSASEDAINLIKSLCSWDPCKRPTALEALQHPFFQSCFYIPPSLRSKMAVTRTPPSA-TRGLSEQKSVRRYSGTVSDSKP 328
BLAST of XM_017366117.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZIT5 ((Putative cyclin-dependent kinase F-4 {ECO:0000313|EMBL:MPA43671.1}) (2.7.11.22 {ECO:0000313|EMBL:MPA43671.1}))
HSP 1 Score: 481.1 bits (1237), Expect = 6.603e-168
Identity = 224/329 (68.09%), Postives = 266/329 (80.85%), Query Frame = 0
Match: A0A5B6ZIT5 ((Putative cyclin-dependent kinase F-4 {ECO:0000313|EMBL:MPA43671.1}) (2.7.11.22 {ECO:0000313|EMBL:MPA43671.1}))
HSP 1 Score: 481.1 bits (1237), Expect = 6.603e-168
Identity = 224/329 (68.09%), Postives = 266/329 (80.85%), Query Frame = 0
Query: 1 MEKYKIIKEVGSGSFGSVFKAMNTQSGEVVAIKRLNKEFDSWEDCLNLREVKSLKKMHHANIVKLKEIIGENNFLFFVFEYMECNLYQVMSTRTKPFSETDVRNWCFQVFQGLAYMHERGYFHRDLKPENLLVSGDIIKIADLGLAREINCSPPYSEYVATRWYRAPEILLAAPIYGPAVDMWAMGAIMAELLTNCPLFAGVNQQDQMYRICSVLGTPTEVDWAYGMELADDISYQFPQHSGVSLSQLMPSASKDVVGLIQSLCSWDPCKRPTALEALQHPFLRSCYYVPPGFRFKTSGLGMNLSARSEGSVKHKYLSRIPGTFSNSGP 329
ME+YKIIKEVG G+FGSV++A+N Q+GEVVAIK++ +++ SWE+C+NLREVKSL+KM+H NIVKLKE+I EN+ L+FVFEYMECNLYQ+M R K FSE +VRNWCFQVFQGLAYMH+RGYFHRDLKPENLLVS D+IKIAD GLAREI PPY+EYV+TRWYRAPE+LL +P Y AVDMWAMGAIMAEL T PLF G + D++Y+ICSV+GTPTE +WA G+ LA I+YQFPQ +GV LS L+PSASKD V LI SLCSWDPCKRPTALEALQHPF + C+YVPP R KT+ SA + G++ K GT SN P
Sbjct: 1 MERYKIIKEVGDGTFGSVWRAINKQTGEVVAIKKMKRKYYSWEECINLREVKSLRKMNHPNIVKLKEVIRENDILYFVFEYMECNLYQLMKDRVKLFSEAEVRNWCFQVFQGLAYMHQRGYFHRDLKPENLLVSKDVIKIADFGLAREICSQPPYTEYVSTRWYRAPEVLLQSPTYNSAVDMWAMGAIMAELFTLRPLFPGSCEADEIYKICSVIGTPTESEWAEGLNLASAINYQFPQLTGVHLSILIPSASKDAVSLIASLCSWDPCKRPTALEALQHPFFQGCFYVPPSLRSKTAVTRTPPSAGTRGTLDQKCARWNSGTLSNLKP 329
BLAST of XM_017366117.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7XUB0 ((cyclin-dependent kinase F-4-like {ECO:0000313|RefSeq:XP_009794518.1}))
HSP 1 Score: 480.33 bits (1235), Expect = 2.305e-167
Identity = 220/329 (66.87%), Postives = 272/329 (82.67%), Query Frame = 0
Match: A0A1U7XUB0 ((cyclin-dependent kinase F-4-like {ECO:0000313|RefSeq:XP_009794518.1}))
HSP 1 Score: 480.33 bits (1235), Expect = 2.305e-167
Identity = 220/329 (66.87%), Postives = 272/329 (82.67%), Query Frame = 0
Query: 1 MEKYKIIKEVGSGSFGSVFKAMNTQSGEVVAIKRLNKEFDSWEDCLNLREVKSLKKMHHANIVKLKEIIGENNFLFFVFEYMECNLYQVMSTRTKPFSETDVRNWCFQVFQGLAYMHERGYFHRDLKPENLLVSGDIIKIADLGLAREINCSPPYSEYVATRWYRAPEILLAAPIYGPAVDMWAMGAIMAELLTNCPLFAGVNQQDQMYRICSVLGTPTEVDWAYGMELADDISYQFPQHSGVSLSQLMPSASKDVVGLIQSLCSWDPCKRPTALEALQHPFLRSCYYVPPGFRFKTSGLGMNLSARSEGSVKHKYLSRIPGTFSNSGP 329
ME+YKIIKEVG+G+FGSV++A+N Q+GEVVAIK++ K++ SWE+C+NLREVKSL+KM H NIVKLKE+I EN+ L+FVFEYMECNLY +M R K F E++VRNWCFQ+FQGLAYMH+RGYFHRDLKPENLLVS D IKIAD GLAREIN PPY+EYV+TRWYRAPE+LL +PIYGPAVDMWAMGAIMAELLT PLF G ++ D++Y+ICSV+G+P++ +WA+G ELA I+YQFPQ +GV+LS L+PSAS+D V LI SLCSWDPCKRPTA+E LQH F +SC+Y+PP R K + SA +G+++ K GT +NS P
Sbjct: 1 MERYKIIKEVGNGTFGSVWRALNKQTGEVVAIKKMKKKYYSWEECINLREVKSLRKMIHPNIVKLKEVIRENDILYFVFEYMECNLYHLMKDRPKLFLESEVRNWCFQIFQGLAYMHQRGYFHRDLKPENLLVSKDTIKIADFGLAREINSQPPYTEYVSTRWYRAPEVLLQSPIYGPAVDMWAMGAIMAELLTLRPLFPGSSEADEIYKICSVIGSPSKSEWAHGHELASSINYQFPQIAGVNLSLLLPSASEDAVNLITSLCSWDPCKRPTAVEVLQHRFFQSCFYIPPSLRSKAAVARTPPSAGMKGAMEQKTNRWSSGTITNSKP 329
BLAST of XM_017366117.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZJ48 ((Putative cyclin-dependent kinase F-4 {ECO:0000313|EMBL:MPA43678.1}) (2.7.11.22 {ECO:0000313|EMBL:MPA43678.1}))
HSP 1 Score: 479.559 bits (1233), Expect = 4.426e-167
Identity = 220/326 (67.48%), Postives = 268/326 (82.21%), Query Frame = 0
Match: A0A5B6ZJ48 ((Putative cyclin-dependent kinase F-4 {ECO:0000313|EMBL:MPA43678.1}) (2.7.11.22 {ECO:0000313|EMBL:MPA43678.1}))
HSP 1 Score: 479.559 bits (1233), Expect = 4.426e-167
Identity = 220/326 (67.48%), Postives = 268/326 (82.21%), Query Frame = 0
Query: 1 MEKYKIIKEVGSGSFGSVFKAMNTQSGEVVAIKRLNKEFDSWEDCLNLREVKSLKKMHHANIVKLKEIIGENNFLFFVFEYMECNLYQVMSTRTKPFSETDVRNWCFQVFQGLAYMHERGYFHRDLKPENLLVSGDIIKIADLGLAREINCSPPYSEYVATRWYRAPEILLAAPIYGPAVDMWAMGAIMAELLTNCPLFAGVNQQDQMYRICSVLGTPTEVDWAYGMELADDISYQFPQHSGVSLSQLMPSASKDVVGLIQSLCSWDPCKRPTALEALQHPFLRSCYYVPPGFRFKTSGLGMNLSARSEGSVKHKYLSRIPGTFSN 326
ME+YKIIKEVG G+FGSV++A+N Q+GEVVAIK++ +++ SWE+C+NLREVKSL+KM+H NIVKLKE+I EN+ L+FVFEYMECNLYQ+M R K FSE +VRNWCFQVFQGLAYMH+RGYFHRDLKPENLLVS DI+KIAD GLAREI+ PPY+EYV+TRWYRAPE+LL +P Y AVDMWAMGAIMAEL T PLF G + D++Y+ICSV+GTPTE +WA G++LA I+YQFPQ +GV L L+PSAS+D + LI LCSWDPCKRPTALEALQHPF +SC+Y+PP R KT+ S + G+++ KY R GT SN
Sbjct: 1 MERYKIIKEVGDGTFGSVWRAINKQTGEVVAIKKMKRKYYSWEECINLREVKSLRKMNHPNIVKLKEVIRENDILYFVFEYMECNLYQLMKDRGKLFSEAEVRNWCFQVFQGLAYMHQRGYFHRDLKPENLLVSKDILKIADFGLAREISSQPPYTEYVSTRWYRAPEVLLQSPTYNSAVDMWAMGAIMAELFTLRPLFPGSCEADEIYKICSVIGTPTESEWAEGLKLARAINYQFPQLTGVHLPILIPSASEDAISLITLLCSWDPCKRPTALEALQHPFFQSCFYIPPSLRSKTTVTRTPPSVGTRGALEQKYARRYCGTQSN 326
BLAST of XM_017366117.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0V0IU28 ((Putative cyclin-dependent kinase F-4-like {ECO:0000313|EMBL:JAP35998.1}))
HSP 1 Score: 476.478 bits (1225), Expect = 9.712e-167
Identity = 215/316 (68.04%), Postives = 268/316 (84.81%), Query Frame = 0
Match: A0A0V0IU28 ((Putative cyclin-dependent kinase F-4-like {ECO:0000313|EMBL:JAP35998.1}))
HSP 1 Score: 476.478 bits (1225), Expect = 9.712e-167
Identity = 215/316 (68.04%), Postives = 268/316 (84.81%), Query Frame = 0
Query: 1 MEKYKIIKEVGSGSFGSVFKAMNTQSGEVVAIKRLNKEFDSWEDCLNLREVKSLKKMHHANIVKLKEIIGENNFLFFVFEYMECNLYQVMSTRTKPFSETDVRNWCFQVFQGLAYMHERGYFHRDLKPENLLVSGDIIKIADLGLAREINCSPPYSEYVATRWYRAPEILLAAPIYGPAVDMWAMGAIMAELLTNCPLFAGVNQQDQMYRICSVLGTPTEVDWAYGMELADDISYQFPQHSGVSLSQLMPSASKDVVGLIQSLCSWDPCKRPTALEALQHPFLRSCYYVPPGFRFKTSGLGMNLSARSEGSVKHKY 316
ME+Y+IIKEVG+G+FG+V++A+N Q+GEVVAIK++ K + SWE+C+NLREVKSL+KM+H+NIVKLKE++ EN+ L+FVFEYMECNLYQ+M R K FSE++VRNWCFQVFQGLAYMH +GYFHRDLKPENLLVS DIIK+AD GLAREIN PPY+EYV+TRWYRAPEILL +PIYGPAVDMWAMGAIMAEL + PLF G ++ D++Y+ICSV+GTPT+ DW+ G+ELA I+YQFPQ +GV L+ L+PSAS++ + LI SLCSWDP KRPTA++ALQHPF +SC+YVPP R K + SA G+V+ KY
Sbjct: 1 MERYQIIKEVGNGTFGNVWRALNKQTGEVVAIKKMKKNYYSWEECINLREVKSLRKMNHSNIVKLKEVVRENDILYFVFEYMECNLYQLMKDRAKLFSESEVRNWCFQVFQGLAYMHRQGYFHRDLKPENLLVSKDIIKVADFGLAREINSQPPYTEYVSTRWYRAPEILLQSPIYGPAVDMWAMGAIMAELFSLRPLFPGSSEADEIYKICSVIGTPTKRDWSQGLELASAINYQFPQVAGVDLALLVPSASENAISLITSLCSWDPRKRPTAIDALQHPFFQSCFYVPPSLRTKAAVAKTPPSAVVRGAVEQKY 316
BLAST of XM_017366117.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068V4X3 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 477.633 bits (1228), Expect = 2.151e-166
Identity = 219/326 (67.18%), Postives = 268/326 (82.21%), Query Frame = 0
Match: A0A068V4X3 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 477.633 bits (1228), Expect = 2.151e-166
Identity = 219/326 (67.18%), Postives = 268/326 (82.21%), Query Frame = 0
Query: 1 MEKYKIIKEVGSGSFGSVFKAMNTQSGEVVAIKRLNKEFDSWEDCLNLREVKSLKKMHHANIVKLKEIIGENNFLFFVFEYMECNLYQVMSTRTKPFSETDVRNWCFQVFQGLAYMHERGYFHRDLKPENLLVSGDIIKIADLGLAREINCSPPYSEYVATRWYRAPEILLAAPIYGPAVDMWAMGAIMAELLTNCPLFAGVNQQDQMYRICSVLGTPTEVDWAYGMELADDISYQFPQHSGVSLSQLMPSASKDVVGLIQSLCSWDPCKRPTALEALQHPFLRSCYYVPPGFRFKTSGLGMNLSARSEGSVKHKYLSRIPGTFSN 326
ME+YKIIKEVG+G+FGSV++A+N Q+GEVVAIK++ K++ SWE+C+NLREVKSL+KM+H NIVKLKE+I E++ L+FVFEYMECNLYQ+M R K FSE +V+NWCFQVFQGLA+MH+RG+FHRDLKPENLLVS D+IKIAD GLAREIN PPY+EYV+TRWYRAPE+LL +P YG AVDMWAMGAIMAEL PLF G ++ D++Y+ICSV+GTPTE DW+ G+ELA I+YQFPQ +GV LS LMPSAS+D + LIQSLCSWDPCKRPTA EA+QHPF +SC+YVPP R K + SA + V+ K R G+ N
Sbjct: 1 MERYKIIKEVGNGTFGSVWRALNKQTGEVVAIKKMKKKYYSWEECINLREVKSLRKMNHPNIVKLKEVIREHDILYFVFEYMECNLYQLMKDRPKLFSEAEVKNWCFQVFQGLAFMHQRGFFHRDLKPENLLVSKDMIKIADFGLAREINSRPPYTEYVSTRWYRAPEVLLQSPTYGSAVDMWAMGAIMAELFALRPLFPGSSEADEIYKICSVIGTPTENDWSEGLELASFINYQFPQVAGVHLSALMPSASEDAIDLIQSLCSWDPCKRPTASEAIQHPFFQSCFYVPPSLRTKAALAKTPPSAGTRVPVEQKTGRRYSGSLPN 326
BLAST of XM_017366117.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6Q373 ((Cyclin-dependent kinase {ECO:0000313|EMBL:PSS01305.1}))
HSP 1 Score: 477.248 bits (1227), Expect = 3.652e-166
Identity = 216/329 (65.65%), Postives = 272/329 (82.67%), Query Frame = 0
Match: A0A2R6Q373 ((Cyclin-dependent kinase {ECO:0000313|EMBL:PSS01305.1}))
HSP 1 Score: 477.248 bits (1227), Expect = 3.652e-166
Identity = 216/329 (65.65%), Postives = 272/329 (82.67%), Query Frame = 0
Query: 1 MEKYKIIKEVGSGSFGSVFKAMNTQSGEVVAIKRLNKEFDSWEDCLNLREVKSLKKMHHANIVKLKEIIGENNFLFFVFEYMECNLYQVMSTRTKPFSETDVRNWCFQVFQGLAYMHERGYFHRDLKPENLLVSGDIIKIADLGLAREINCSPPYSEYVATRWYRAPEILLAAPIYGPAVDMWAMGAIMAELLTNCPLFAGVNQQDQMYRICSVLGTPTEVDWAYGMELADDISYQFPQHSGVSLSQLMPSASKDVVGLIQSLCSWDPCKRPTALEALQHPFLRSCYYVPPGFRFKTSGLGMNLSARSEGSVKHKYLSRIPGTFSNSGP 329
ME+YKIIKEVG G+FGSV++A+N Q+GE+VAIK++ +++ SWE+C++LREVKSL+KM+H NIVKLKE+I EN+ L+FVFEYMECNLYQ++ R K FSE +VRNWCFQVFQGLAYMH++GYFHRDLKPENLLVS +IIKIAD GLAREI+ PPY+EYV+TRWYRAP++LL +P+Y AVDMWAMGAIMAEL T CPLF G ++ D++YRICSV+GTPTE+ W G++LA I+YQFP+ +GV LS L+PSAS+D + LI+SLCSWDPCKRPTALEALQHPF +SC+Y+PP R K + A + G + K + R GT S+S P
Sbjct: 13 MERYKIIKEVGDGTFGSVWRAINKQTGEIVAIKKMKRKYYSWEECISLREVKSLRKMNHPNIVKLKEVIRENDILYFVFEYMECNLYQLIKDRGKLFSENEVRNWCFQVFQGLAYMHQQGYFHRDLKPENLLVSKNIIKIADFGLAREISSQPPYTEYVSTRWYRAPKVLLQSPMYNSAVDMWAMGAIMAELFTLCPLFPGSSEADEIYRICSVIGTPTEIVWDEGLKLASAINYQFPELTGVHLSVLVPSASEDAINLIKSLCSWDPCKRPTALEALQHPFFQSCFYIPPSLRSKIAVTRTPPCAGTRGLSEQKSVRRYSGTVSDSKP 341
| Match Name | Stats | Description |
|---|---|---|
| A0A5J4ZT61 | E-Value: 1.226e-168, PID: 66.87 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A1J6IBA2 | E-Value: 1.390e-168, PID: 67.48 | (Cyclin-dependent kinase f-4 {ECO:0000313|EMBL:OIS... [more] |
| A0A5B6ZGX0 | E-Value: 4.172e-168, PID: 68.09 | (Putative cyclin-dependent kinase F-4 {ECO:0000313... [more] |
| A0A7J0GCV2 | E-Value: 5.498e-168, PID: 66.87 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A5B6ZIT5 | E-Value: 6.603e-168, PID: 68.09 | (Putative cyclin-dependent kinase F-4 {ECO:0000313... [more] |
| A0A1U7XUB0 | E-Value: 2.305e-167, PID: 66.87 | (cyclin-dependent kinase F-4-like {ECO:0000313|Ref... [more] |
| A0A5B6ZJ48 | E-Value: 4.426e-167, PID: 67.48 | (Putative cyclin-dependent kinase F-4 {ECO:0000313... [more] |
| A0A0V0IU28 | E-Value: 9.712e-167, PID: 68.04 | (Putative cyclin-dependent kinase F-4-like {ECO:00... [more] |
| A0A068V4X3 | E-Value: 2.151e-166, PID: 67.18 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A2R6Q373 | E-Value: 3.652e-166, PID: 65.65 | (Cyclin-dependent kinase {ECO:0000313|EMBL:PSS0130... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |