Resource Type:
Polypeptide
Name:
XM_017367512.1
Identifier:
XM_017367512.1-protein
Sequence:
MLLSVDCGGTIDSTEVATIMPTKEKMGGAVITTLSMDSHLCTLLSMDSSL
SSHEEIERELNRAINVSSPPDINLPLSAEPSPPPPSWNDACDILDVSHAP
QHYEAETHINLTKVGKKCAKRLDSVWGAWFFFNFYFKPALNEKSKSKIAV
RDTNGVSGYDKTDLKLDVFLVQHDMENMYMWVFKDRPDNALGKMQLRSYM
NGHSRQGERPFPFSADKGFVRSHRMQRKHYRGLSNPQCVHGIEVVPSPNF
AGLDEGECKKWMELTGRDLNFSIPLEASDFSSWRTLPVTELEIERLPPLK
NNVNQQPKRLLNGCGLKLSTQQPNHVNGEGMDLLANCNKRPKNYFAPEND
YDCTLANNSSHSDGVVDAHSIEPHWVNEFTGVMRSTYGPVTAAKTIYEDD
KGFLIIVSLPCADLQRVKVTWRNTPSHGIVKISCVSTGCMPIIKRQDRTF
KLTDPTPEHCPPGEFVREITLPARIPEDAKLEAYGDETGTMLEIEVPKHR
VGPEEHEVHVCLRPSPWREQRAYVDLTEALV
Sequence Length:
531
Sequence Checksum:
e9b2932a9734bb454f433a857ff57d8f
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017367512.1, derives from mRNA, XM_017367512.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017367512.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017367512.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AQ44 ((Uncharacterized protein {ECO:0000313|EMBL:MPA58689.1}))
HSP 1 Score: 855.129 bits (2208), Expect = 0.000e+0
Identity = 423/534 (79.21%), Postives = 462/534 (86.52%), Query Frame = 0
Match: A0A5B7AQ44 ((Uncharacterized protein {ECO:0000313|EMBL:MPA58689.1}))
HSP 1 Score: 855.129 bits (2208), Expect = 0.000e+0
Identity = 423/534 (79.21%), Postives = 462/534 (86.52%), Query Frame = 0
Query: 1 MLLSVDCGGTIDSTEVATIMPTKEKMGGAVITTLSM-DSHLCTLLSMDSSLSSHEEIERELNRAINVSSPPDINLPLSAEPSPPPPSWNDACDILDVSHAPQHYEAETHINLTKVGKKCAKRLDSVWGAWFFFNFYFKPALNEKSKSKIAVRDTNGVSGYDKTDLKLDVFLVQHDMENMYMWVFKDRPDNALGKMQLRSYMNGHSRQGERPFPFSADKGFVRSHRMQRKHYRGLSNPQCVHGIEVVPSPNFAGLDEGECKKWMELTGRDLNFSIPLEASDFSSWRTLPVTELEIER-LPPLK-NNVNQQPKRLLNGCGLKLSTQQPNHVNGEGMDLLANCNKRPKNYFAPENDYDCTLANNSSHSDGVVDAHSIEPHWVNEFTGVMRSTYGPVTAAKTIYEDDKGFLIIVSLPCADLQRVKVTWRNTPSHGIVKISCVSTGCMPIIKRQDRTFKLTDPTPEHCPPGEFVREITLPARIPEDAKLEAYGDETGTMLEIEVPKHRVGPEEHEVHVCLRPSPWREQRAYVDLTEALV 531
MLLSVDCGGT+DST V T + +KMG A++TTLSM D+HL TLLSMD+S SS EE+ERELNRAI++S PPDINLPL AEPSPPPPSWND CDILDV QHYEAET+I +TK GKKC KRLDSVWGAWFFF+FYFKPAL+EKSKSK+ R++NGVSGYDK+DLKLDVFLVQHD+ENMYMWVFK+RP+NALGKMQLRSYMNGHSRQGERPFPFS DKGFVRSHRMQRK YRGLSNPQCVHGIEVV SPN GLDE E KKWMELTGRDLNF+IPLEASDF SWR L +TE E+ER PPLK NN N K+LLNG L+LSTQ +HVNG+GM+LL NKR K++F ND DC L NN++H D V+D H IEPHW+NEFTGVMRS YGPVTAAKTIYEDD+GFLIIVSLP ADL++VKVTWRNT SHGIVKISCVSTGCMPIIKRQDRTFKLTDP PEHCPPGEFVREI L RIPEDAKLEAYGDETGTMLEI VPKHRVGPEEHEV VCLRPS W + R YVDLTEALV
Sbjct: 1 MLLSVDCGGTLDSTSVTT--KSTKKMGKALLTTLSMEDNHLSTLLSMDTSSSSREEMERELNRAIHLSPPPDINLPLLAEPSPPPPSWNDTCDILDVGLGAQHYEAETNITVTKGGKKCTKRLDSVWGAWFFFSFYFKPALSEKSKSKMT-RESNGVSGYDKSDLKLDVFLVQHDLENMYMWVFKERPENALGKMQLRSYMNGHSRQGERPFPFSVDKGFVRSHRMQRKQYRGLSNPQCVHGIEVVRSPNLMGLDEEEQKKWMELTGRDLNFTIPLEASDFGSWRNLTITEFELERPTPPLKSNNSNPHSKKLLNGSSLELSTQPSDHVNGDGMNLLHVSNKRRKSFFPHGNDDDCCLPNNNAHLDRVLDIHPIEPHWLNEFTGVMRSAYGPVTAAKTIYEDDEGFLIIVSLPFADLEKVKVTWRNTLSHGIVKISCVSTGCMPIIKRQDRTFKLTDPMPEHCPPGEFVREIPLATRIPEDAKLEAYGDETGTMLEIIVPKHRVGPEEHEVRVCLRPSRWSD-RPYVDLTEALV 530
BLAST of XM_017367512.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5B866 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8539445.1}))
HSP 1 Score: 838.565 bits (2165), Expect = 0.000e+0
Identity = 414/534 (77.53%), Postives = 460/534 (86.14%), Query Frame = 0
Match: A0A5J5B866 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8539445.1}))
HSP 1 Score: 838.565 bits (2165), Expect = 0.000e+0
Identity = 414/534 (77.53%), Postives = 460/534 (86.14%), Query Frame = 0
Query: 1 MLLSVDCGGTIDSTEVATIMPTKEKMGGAVITTLSM-DSHLCTLLSMDSSLSSHEEIERELNRAINVSSPPDINLPLSAEPSPPPPSWNDACDILDVSHAPQHYEAETHINLTKVGKKCAKRLDSVWGAWFFFNFYFKPALNEKSKSKIAVRDTNGVSGYDKTDLKLDVFLVQHDMENMYMWVFKDRPDNALGKMQLRSYMNGHSRQGERPFPFSADKGFVRSHRMQRKHYRGLSNPQCVHGIEVVPSPNFAGLDEGECKKWMELTGRDLNFSIPLEASDFSSWRTLPVTELEIER-LPPLKNN-VNQQPKRLLNGCGLKLSTQQPNHVNGEGMDLLANCNKRPKNYFAPENDYDCTLANNSSHSDGVVDAHSIEPHWVNEFTGVMRSTYGPVTAAKTIYEDDKGFLIIVSLPCADLQRVKVTWRNTPSHGIVKISCVSTGCMPIIKRQDRTFKLTDPTPEHCPPGEFVREITLPARIPEDAKLEAYGDETGTMLEIEVPKHRVGPEEHEVHVCLRPSPWREQRAYVDLTEALV 531
MLLSVDCGGT+DST V I + ++MG A++TTLSM D+HL TLLSMD+S SS EE+EREL+RAI++S PPDINLPL AEPSPPPPSWND C ILDV QHYEAET+I +TK GKKC KRLDSVWGAWFFF+FYFKPAL+E SKSK+ R+++GVSGYDK+DLKLDVFLVQHD+ENMYMWVFK+RP+NALGKMQLRSYMNGHSRQGERPFP+S DKGFVRSHRMQRK YRGLSNPQC+HGIEVVP+P+ LDE E KKWMELTGRDLNF+IPLEASDF SWR L TE E+ER LPPLK+N N PK+LLNG L+LSTQ +HVNG+GM+LL NKR K++F D DC L NN+ HSD V+D H+IEPHW+NEFTGVMRS YGPVTAAKTIYEDD+GFLIIVSLP ADL +VKVTWRNT SHGIVKISCVSTGCMPIIKRQDRTFKLTDPTPEHCPPGEF+REI L RIPEDAKLEAYGDETGTMLEI VPKHRVGPEEHEV VCLRPS W + YVDLTEALV
Sbjct: 1 MLLSVDCGGTLDSTSV--ITKSTKRMGKALLTTLSMEDNHLSTLLSMDTSSSSREEMERELHRAIHLSPPPDINLPLLAEPSPPPPSWNDTCHILDVGLGAQHYEAETNITVTKGGKKCTKRLDSVWGAWFFFSFYFKPALSENSKSKM-TRESSGVSGYDKSDLKLDVFLVQHDLENMYMWVFKERPENALGKMQLRSYMNGHSRQGERPFPYSVDKGFVRSHRMQRKQYRGLSNPQCIHGIEVVPAPSLMSLDEEEQKKWMELTGRDLNFTIPLEASDFGSWRNLTSTEFELERPLPPLKSNGSNLHPKKLLNGSSLELSTQPSDHVNGDGMNLLPISNKRRKSFFPHGTDDDCCLPNNA-HSDRVLDIHAIEPHWLNEFTGVMRSAYGPVTAAKTIYEDDEGFLIIVSLPFADLAKVKVTWRNTLSHGIVKISCVSTGCMPIIKRQDRTFKLTDPTPEHCPPGEFIREIPLATRIPEDAKLEAYGDETGTMLEIIVPKHRVGPEEHEVRVCLRPSRWSDH-PYVDLTEALV 529
BLAST of XM_017367512.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A118K5X1 ((Uncharacterized protein {ECO:0000313|EMBL:KVI09798.1}))
HSP 1 Score: 834.713 bits (2155), Expect = 0.000e+0
Identity = 418/543 (76.98%), Postives = 462/543 (85.08%), Query Frame = 0
Match: A0A118K5X1 ((Uncharacterized protein {ECO:0000313|EMBL:KVI09798.1}))
HSP 1 Score: 834.713 bits (2155), Expect = 0.000e+0
Identity = 418/543 (76.98%), Postives = 462/543 (85.08%), Query Frame = 0
Query: 1 MLLSVDCGGTIDSTE--VATIMPTKEKMGGAVITTLSMDS-HLCTLLSMDSSLSSHEEIERELNRAINVSSPPDINLPLSAEPSPPPPSWNDACDILDVSHAPQHYEAETHINLTKVGKKCAKRLDSVWGAWFFFNFYFKPALNEKSKSKIAVRDTNGVSGYDKTDLKLDVFLVQHDMENMYMWVFKDRPDNALGKMQLRSYMNGHSRQGERPFPFSADKGFVRSHRMQRKHYRGLSNPQCVHGIEVVPSPNFAGLDEGECKKWMELTGRDLNFSIPLEASDFSSWRTLPVTELEIERLPPLKNN----VNQQPKRLLNGCGLKLSTQQPNHVNGE----GMDLLANCN-KRPKNYFAPENDYDCTLANNSSHSDGVVDAHSIEPHWVNEFTGVMRSTYGPVTAAKTIYEDDKGFLIIVSLPCADLQRVKVTWRNTPSHGIVKISCVSTGCMPIIKRQDRTFKLTDPTPEHCPPGEFVREITLPARIPEDAKLEAYGDETGTMLEIEVPKHRVGPEEHEVHVCLRPSPWREQRAYVDLTEALV 531
MLLSVDCGGT DSTE TIMP KEK+GG ++TTLSMD+ HL T+LSMDSSLS+H+E+ERELNRA+++S PPDINLPLSAEPSPPP SWND CD+LDV PQHYE ET+IN+TK+GKKCAKRLDSVWGAWFFFNFYFKPALNEKSK+K+ N +GYDK+DLKLDVFLVQHDMENMYMW FK+RP NALGKMQLRSYMNGHSRQGE+PFPFSADKGFVRSHRMQRKHYRGLSNPQCVHGIEVV SPN GLDE E K+WMELTGRDLNF+IPL+ASDF SWR LP T+ EIER P ++NN N QPKRLLNG GL LSTQ HVNGE GMDLL CN KR KN+F ND D +SDGV+D H +EPHW+ EF+GVMR+ YGPVTAAKTIYED++GFLI+VSLPCADLQRVKVTW+NT SHGIVKI CVSTGCMPI+KR+DRTFKLTDPTPEHCPPG+FVREI+LP RIPEDAKLEAYGDE+GTMLEI VPKHR GPEEHEV VCLRPSPW E R YVDLTE L+
Sbjct: 1 MLLSVDCGGTKDSTEEDTNTIMPAKEKLGGDLLTTLSMDNNHLSTILSMDSSLSAHDEMERELNRAVDLSLPPDINLPLSAEPSPPPSSWNDTCDMLDVGLGPQHYEVETNINVTKIGKKCAKRLDSVWGAWFFFNFYFKPALNEKSKNKV-----NRENGYDKSDLKLDVFLVQHDMENMYMWTFKERPGNALGKMQLRSYMNGHSRQGEKPFPFSADKGFVRSHRMQRKHYRGLSNPQCVHGIEVVRSPNLMGLDEEERKRWMELTGRDLNFAIPLDASDFGSWRNLPSTDFEIERPPVIRNNNSTNGNHQPKRLLNGSGLNLSTQISEHVNGEANGNGMDLLVGCNSKRRKNFFPHGNDDD--------NSDGVLDTHPMEPHWLTEFSGVMRTAYGPVTAAKTIYEDEEGFLIVVSLPCADLQRVKVTWKNTLSHGIVKIFCVSTGCMPILKRKDRTFKLTDPTPEHCPPGDFVREISLPTRIPEDAKLEAYGDESGTMLEIIVPKHREGPEEHEVRVCLRPSPWNE-RPYVDLTETLI 529
BLAST of XM_017367512.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7H4D5 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5947843.1}))
HSP 1 Score: 803.127 bits (2073), Expect = 0.000e+0
Identity = 411/519 (79.19%), Postives = 439/519 (84.59%), Query Frame = 0
Match: A0A7J7H4D5 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5947843.1}))
HSP 1 Score: 803.127 bits (2073), Expect = 0.000e+0
Identity = 411/519 (79.19%), Postives = 439/519 (84.59%), Query Frame = 0
Query: 1 MLLSVDCGGTIDSTEVATIMPTKEKMGGAVITTLSMDSH-LCTLLSMDSSLSSHEEIERELNRAINVSSPPDINLPLSAEPSPPPPSWNDACDILDVSHAPQHYEAETHINLTKVGKKCAKRLDSVWGAWFFFNFYFKPALNEKSKSKIAVRDTNGVSGYDKTDLKLDVFLVQHDMENMYMWVFKDRPDNALGKMQLRSYMNGHSRQGERPFPFSADKGFVRSHRMQRKHYRGLSNPQCVHGIEVVPSPNFAGLDEGECKKWMELTGRDLNFSIPLEASDFSSWRTLPVTELEIERLPP-LKNNVNQQPKRLLNGCGLKLSTQQPNHVNGEGMDLLANCNKRPKNYFAPENDYDCTLANNSSHSDGVVDAHSIEPHWVNEFTGVMRSTYGPVTAAKTIYEDDKGFLIIVSLPCADLQRVKVTWRNTPSHGIVKISCVSTGCMPIIKRQDRTFKLTDPTPEHCPPGEFVREITLPARIPEDAKLEAYGDETGTMLEIEVPKHRVGPEEHEVHVCLRPSPW 517
MLLSVDCGGT++ST V T TKEKMG A +TTLSM+S+ TLLSMDSS S H+E+ERELNR N PPDINLPLSAE SPPPPSWND CD+LDV A QHYEAET+I +TK GKKCAKRLDSVWGAWFFFNFYFKPALNEKSK KI ++NGVSGYDK+DLKLDVFLVQHDMENMYMWVFK++P+NALGKMQLRSYMNGHSRQGERPFPFS D+GFVRSHRMQRK YRGLSNPQCVHGIEVV SPN GLDE E KKW ELTGRD+NFSIPLEASDF SWR L TE E+ER PP LK N N PKRLLNG L LSTQQPNHVNG+G DL NKR KN+ + ND DC L NN+ D V+D H IEP+W+NEFTGVMRS YGPVTAAKTIYEDD+GFLIIVSLP DLQRVKVTWRNT SHGIVKI+CVSTG MPIIKRQDRTFKL DPTPEHCPPGEFVREI L RIPEDAKLEAYGDETGTMLEI VPKH VGPEEHEV VCLRPSPW
Sbjct: 1 MLLSVDCGGTMNSTSVTT-KSTKEKMGEAFLTTLSMESNRFSTLLSMDSSSSLHDEMERELNRGFNHYRPPDINLPLSAEHSPPPPSWNDPCDMLDVGLATQHYEAETNITVTKAGKKCAKRLDSVWGAWFFFNFYFKPALNEKSKGKITW-ESNGVSGYDKSDLKLDVFLVQHDMENMYMWVFKEKPENALGKMQLRSYMNGHSRQGERPFPFSVDRGFVRSHRMQRKQYRGLSNPQCVHGIEVVRSPNLMGLDEEERKKWTELTGRDINFSIPLEASDFGSWRNLLNTEFELERPPPPLKTNTNPHPKRLLNGSSLNLSTQQPNHVNGDGTDLPV-YNKRRKNFLSHGNDDDCCLPNNT-QPDRVLDIHPIEPYWLNEFTGVMRSAYGPVTAAKTIYEDDEGFLIIVSLPFVDLQRVKVTWRNTLSHGIVKIACVSTGRMPIIKRQDRTFKLMDPTPEHCPPGEFVREIPLAVRIPEDAKLEAYGDETGTMLEIIVPKHHVGPEEHEVRVCLRPSPW 515
BLAST of XM_017367512.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7APU6 ((Uncharacterized protein {ECO:0000313|EMBL:MPA58687.1}))
HSP 1 Score: 802.742 bits (2072), Expect = 0.000e+0
Identity = 409/510 (80.20%), Postives = 439/510 (86.08%), Query Frame = 0
Match: A0A5B7APU6 ((Uncharacterized protein {ECO:0000313|EMBL:MPA58687.1}))
HSP 1 Score: 802.742 bits (2072), Expect = 0.000e+0
Identity = 409/510 (80.20%), Postives = 439/510 (86.08%), Query Frame = 0
Query: 26 MGGAVITTLSMDS-HLCTLLSMDSSLSSHEEI-ERELNRAINVSSPPDINLPLSAEPSPPPPSWNDACDILDVSHAPQHYEAETHINLTKVGKKCAKRLDSVWGAWFFFNFYFKPALNEKSKSKIAVRDTNGVSGYDKTDLKLDVFLVQHDMENMYMWVFKDRPDNALGKMQLRSYMNGHSRQGERPFPFSADKGFVRSHRMQRKHYRGLSNPQCVHGIEVVPSPNFAGLDEGECKKWMELTGRDLNFSIPLEASDFSSWRTLPVTELEIER-LPPLK-NNVNQQPKRLLNGCGLKLSTQQPNHVNGEGMDLLANCNKRPKNYFAPENDYDCTLANNSSHSDGVVDAHSIEPHWVNEFTGVMRSTYGPVTAAKTIYEDDKGFLIIVSLPCADLQRVKVTWRNTPSHGIVKISCVSTGCMPIIKRQDRTFKLTDPTPEHCPPGEFVREITLPARIPEDAKLEAYGDETGTMLEIEVPKHRVGPEEHEVHVCLRPSPWREQRAYVDLTEALV 531
MG A++TTLSM+S HL TLLSMD+S SSHEEI EREL R IN+S PPDINLPLSAEPSPPPPSWND CDILDV QHYE ET+IN+TK+GKKCAKRLDSVWGAW FFNFYFKPALNEKSK K+ R+ NGVS YDK+ LKLDVFLVQHDMENMYMWVFK+RP+NALGKMQLRSYMNGHSRQGERPFPFS DKGFVRSHRMQRK YRGLSNPQCVHGIEVV SPN GLDE E KKWMELTGRDLNF+IPLEASDF SWR L +TE E+ER PPLK NN N K+LLNG L+LSTQ +HVNG+GM+LL NKR K++F ND DC L NN+ H D V+D H IEPHW+NEFTGVMRS YGPVTAAKTIYEDD+GFLIIVSLP ADL++VKVTWRNT SHGIVKISCVSTGCMPIIKRQDRTFKLTDP PEHCPPGEFVREI L RIPEDAKLEAYGDETGTMLEI VPKHRVGPEEHEV VCLRPS W + R YVDLTEALV
Sbjct: 1 MGEALLTTLSMESNHLSTLLSMDTSSSSHEEIMERELKRVINLSRPPDINLPLSAEPSPPPPSWNDTCDILDVGLGAQHYEVETNINVTKIGKKCAKRLDSVWGAWVFFNFYFKPALNEKSKPKMT-REANGVSVYDKSGLKLDVFLVQHDMENMYMWVFKERPENALGKMQLRSYMNGHSRQGERPFPFSVDKGFVRSHRMQRKQYRGLSNPQCVHGIEVVRSPNLMGLDEEEQKKWMELTGRDLNFTIPLEASDFGSWRNLTITEFELERPTPPLKSNNSNPHSKKLLNGSSLELSTQPSDHVNGDGMNLLHVSNKRRKSFFPHGNDDDCCLPNNA-HLDRVLDIHPIEPHWLNEFTGVMRSAYGPVTAAKTIYEDDEGFLIIVSLPFADLEKVKVTWRNTLSHGIVKISCVSTGCMPIIKRQDRTFKLTDPMPEHCPPGEFVREIPLATRIPEDAKLEAYGDETGTMLEIIVPKHRVGPEEHEVRVCLRPSRWSD-RPYVDLTEALV 507
BLAST of XM_017367512.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251UCV9 ((Putative FYD {ECO:0000313|EMBL:OTG21165.1}))
HSP 1 Score: 798.89 bits (2062), Expect = 0.000e+0
Identity = 400/557 (71.81%), Postives = 444/557 (79.71%), Query Frame = 0
Match: A0A251UCV9 ((Putative FYD {ECO:0000313|EMBL:OTG21165.1}))
HSP 1 Score: 798.89 bits (2062), Expect = 0.000e+0
Identity = 400/557 (71.81%), Postives = 444/557 (79.71%), Query Frame = 0
Query: 1 MLLSVDCGGTIDSTE--------------VATIMPTKEKMGGAVITTLSMDS-HLCTLLSMDSSLSSHEEIERELNRAINVSSPPDINLPLSAEPSPPPPSWNDACDILDVSHAPQHYEAETHINLTKVGKKCAKRLDSVWGAWFFFNFYFKPALNEKSKSKIAVRDTNGVSGYDKTDLKLDVFLVQHDMENMYMWVFKDRPDNALGKMQLRSYMNGHSRQGERPFPFSADKGFVRSHRMQRKHYRGLSNPQCVHGIEVVPSPNFAGLDEGECKKWMELTGRDLNFSIPLEASDFSSWRTLPVTELEIERLPPLKN---NVNQ-QPKRLLNGCGLKLSTQQPNHVNGE------GMDLLANCN-KRPKNYFAPENDYDCTLANNSSHSDGVVDAHSIEPHWVNEFTGVMRSTYGPVTAAKTIYEDDKGFLIIVSLPCADLQRVKVTWRNTPSHGIVKISCVSTGCMPIIKRQDRTFKLTDPTPEHCPPGEFVREITLPARIPEDAKLEAYGDETGTMLEIEVPKHRVGPEEHEVHVCLRPSPWREQRAYVDLTEALV 531
MLLSVDCGGT DSTE IMP KEK+GG +T LSMD+ HL T+LSMDS LS+H+E+ERELNRA+ +S PPDINLP SAEPSPPP SWND CD+LDV QHYE ET+IN+TK+GKKCAKR+DSVWGAWFFFNFYFKPALNEKSKSK+ N +G+DK+DLKLDVFLVQHDMENMYMW FK+RP+NALGKMQLRSYMNGHSRQGE+ FPFSADKGFVRSHRMQRKHYRGLSNPQCVHGIEVV SPN GLDE E K+WMELTGRDLNFSIPL+ASDF SWR LP T+ EIER P ++N N N QPKRLLNG GL LSTQ H E G+DL CN KR KN+F ND D + DGV+D H +EPHWVN+F+GVMR+ YGPVT AKTIYED++GFLI+VSLPCADLQRVKVTWRNT SHGIVKI CVSTGCMP++KR+DRTFK+TDP PEHCPPGEF+REI LPARIPEDAKLEAYGDE+GTMLEI VPKHR GPEEHEV VCLRP R YVD TE L+
Sbjct: 1 MLLSVDCGGTNDSTEEDPNQNPNPKPKPNKNMIMPVKEKLGGDFLTNLSMDNNHLSTMLSMDSCLSAHDEMERELNRAVVLSLPPDINLPFSAEPSPPPASWNDGCDMLDVGLGSQHYEVETNINVTKIGKKCAKRVDSVWGAWFFFNFYFKPALNEKSKSKV-----NRENGFDKSDLKLDVFLVQHDMENMYMWAFKERPENALGKMQLRSYMNGHSRQGEKQFPFSADKGFVRSHRMQRKHYRGLSNPQCVHGIEVVRSPNLTGLDEEERKRWMELTGRDLNFSIPLDASDFGSWRNLPSTDFEIERPPVIRNGPANGNHHQPKRLLNGSGLNLSTQLSEHSISEPNGSLNGVDLTVGCNNKRKKNFFPHGNDDD--------NYDGVLDIHHVEPHWVNDFSGVMRNAYGPVTGAKTIYEDEEGFLIVVSLPCADLQRVKVTWRNTLSHGIVKIFCVSTGCMPMLKRKDRTFKMTDPAPEHCPPGEFIREIALPARIPEDAKLEAYGDESGTMLEIIVPKHREGPEEHEVRVCLRPC----DRPYVDFTETLI 540
BLAST of XM_017367512.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6Q7S3 ((Uncharacterized protein {ECO:0000313|EMBL:KAD7480086.1}))
HSP 1 Score: 795.423 bits (2053), Expect = 0.000e+0
Identity = 402/544 (73.90%), Postives = 448/544 (82.35%), Query Frame = 0
Match: A0A5N6Q7S3 ((Uncharacterized protein {ECO:0000313|EMBL:KAD7480086.1}))
HSP 1 Score: 795.423 bits (2053), Expect = 0.000e+0
Identity = 402/544 (73.90%), Postives = 448/544 (82.35%), Query Frame = 0
Query: 2 LLSVDCGGTIDSTE--VATIMPTKEKMGGAVITTLSMDS-HLCTLLSMDSSLSSHEEIERELNRAINVSSPPDINLPLSAEPSPPPPSWNDACDILDVSHAPQHYEAETHINLTKVGKKCAKRLDSVWGAWFFFNFYFKPALNEKSKSKIAVRDTNGVSGYDKTDLKLDVFLVQHDMENMYMWVFKDRPDNALGKMQLRSYMNGHSRQGERPFPFSADKGFVRSHRMQRKHYRGLSNPQCVHGIEVVPSPNFAGLDEGECKKWMELTGRDLNFSIPLEASDFSSWRTLPVTELEIERLPPLK----NNVNQQPKRLLNGCGLKLSTQQPNHVNGE------GMDLLANCN-KRPKNYFAPENDYDCTLANNSSHSDGVVDAHSIEPHWVNEFTGVMRSTYGPVTAAKTIYEDDKGFLIIVSLPCADLQRVKVTWRNTPSHGIVKISCVSTGCMPIIKRQDRTFKLTDPTPEHCPPGEFVREITLPARIPEDAKLEAYGDETGTMLEIEVPKHRVGPEEHEVHVCLRPSPWREQRAYVDLTEALV 531
L SVDCGGT DSTE TIMP KEK GG ++TTLSMD+ HL T+LSMDSSLS H+E+ERELNRA+++ PPDINLPLSAEPSPPP SWNDACD+L+V QHYE ET IN+TK+GKKCAKRLDSVWGAWFFFNFYFKPALNEKSK+K+ RD +GYDK+DLKLDVFLVQHDMENMYMW FK+RP+NALGKMQLRSYMNGHSRQGE+PFPFSAD+GFVRSHRMQRKHYRGLSNPQCVHGIEVV +PN GLDE E K+WMELTGRD NFSIPL+ASDF SWR LP T+ EI+R P ++ N + QPKRLLNG GL LSTQ HVNGE GMDL+ CN KR K +F ND D SDG++D H IEPHW+ +F+GVMR+ YGPVTAAKTIYEDD+GFLI+VSLPCADLQRVKVTWRNT SHGIVKI CVSTGCMP +KR+DRTFKLTDP PEHCPPGEF+REI LP RIPEDAK+EAYGDE+GTMLEI VPKHR GPEEHEV VCLRP +R YVDLTE L+
Sbjct: 160 LHSVDCGGTNDSTEEDTNTIMPAKEKHGGDLLTTLSMDNNHLSTILSMDSSLSVHDEMERELNRAVDLGLPPDINLPLSAEPSPPPSSWNDACDMLEVGLGSQHYEVETSINVTKIGKKCAKRLDSVWGAWFFFNFYFKPALNEKSKNKVT-RD----NGYDKSDLKLDVFLVQHDMENMYMWTFKERPENALGKMQLRSYMNGHSRQGEKPFPFSADRGFVRSHRMQRKHYRGLSNPQCVHGIEVVRAPNLMGLDEEERKRWMELTGRDFNFSIPLDASDFGSWRNLPSTDFEIDRPPVIRSSSSNGNHHQPKRLLNGSGLNLSTQLSEHVNGEANGNLNGMDLMVGCNSKRKKTFFPHINDDDT--------SDGILDVHHIEPHWLTDFSGVMRNAYGPVTAAKTIYEDDEGFLIVVSLPCADLQRVKVTWRNTLSHGIVKIFCVSTGCMPTLKRKDRTFKLTDPAPEHCPPGEFIREIPLPTRIPEDAKIEAYGDESGTMLEIIVPKHREGPEEHEVRVCLRPY----ERPYVDLTETLL 686
BLAST of XM_017367512.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6VRD1 ((uncharacterized protein LOC113725485 {ECO:0000313|RefSeq:XP_027104467.1}))
HSP 1 Score: 786.949 bits (2031), Expect = 0.000e+0
Identity = 393/513 (76.61%), Postives = 437/513 (85.19%), Query Frame = 0
Match: A0A6P6VRD1 ((uncharacterized protein LOC113725485 {ECO:0000313|RefSeq:XP_027104467.1}))
HSP 1 Score: 786.949 bits (2031), Expect = 0.000e+0
Identity = 393/513 (76.61%), Postives = 437/513 (85.19%), Query Frame = 0
Query: 20 MPTKEKMGGAVITTLSMDSH-LCTLLSMDSSLSSHEEIERELNRAINVSSPPDINLPLSAEPSPPPPSWNDACDILDVSHAPQHYEAETHINLTKVGKKCAKRLDSVWGAWFFFNFYFKPALNEKSKSKIAVRDTNGVSGYDKTDLKLDVFLVQHDMENMYMWVFKDRPDNALGKMQLRSYMNGHSRQGERPFPFSADKGFVRSHRMQRKHYRGLSNPQCVHGIEVVPSPNFAGLDEGECKKWMELTGRDLNFSIPLEASDFSSWRTLPVTELEIERLPPLKNNVNQQPKRLLNGCGLKLSTQQPNHVNGEGMDLLANCNKRPKNYFAPENDYDCTLANNSSHSDGVVDAHSIEPHWVNEFTGVMRSTYGPVTAAKTIYEDDKGFLIIVSLPCADLQRVKVTWRNTPSHGIVKISCVSTGCMPIIKRQDRTFKLTDPTPEHCPPGEFVREITLPARIPEDAKLEAYGDETGTMLEIEVPKHRVGPEEHEVHVCLRPSPWREQRAYVDLTEALV 531
MP KEKMG ++T+LSM+S+ L TLL+MDSS S+HEE ERELNRA+N+ PPDIN+PLSAEPSPPPP WND+CD+LDV PQ YE E + TK+GKKCAKRLDSVWGAWFFF+FYFKP LNEKSK+K+ ++NG++GYDK+DLKLDVFLVQHDMENMYMWVFK+RP+NALGKMQLRSYMNGHSRQGERPFPFS +KGFVRSHRMQRKHYRGLSNPQCVHGIEVV +PN LD+ E KKWMELTGRDLNFSIP EASDF SWR LP T+ E+ R P LK+N + PKRLL+G L LSTQ NH NGEG++LLA CNKR KN+F ND D L NS+ D V+D H+IEP W++EFTGVMRS YGPVTAAKTIYEDD+GFLIIVS+P DLQRVKVTWRNT SHGIVKISCVS GC+P+IKR DRTFKLTDPTPEHCP GEFVREI LP RIPEDAKLEAYGD TGTMLEI VPKHRVGPEEHEV VCLRPSPW E RAYVDLTEALV
Sbjct: 1 MPAKEKMGEDLLTSLSMESNRLSTLLTMDSSSSNHEEAERELNRAVNLLQPPDINVPLSAEPSPPPPVWNDSCDMLDVGIGPQLYEVEANNIATKIGKKCAKRLDSVWGAWFFFSFYFKPVLNEKSKNKVTW-ESNGLNGYDKSDLKLDVFLVQHDMENMYMWVFKERPENALGKMQLRSYMNGHSRQGERPFPFSVEKGFVRSHRMQRKHYRGLSNPQCVHGIEVVRTPNLKILDDEERKKWMELTGRDLNFSIPPEASDFGSWRHLPNTDFELVRPPALKSNPSSHPKRLLSGSSLNLSTQTSNHSNGEGLELLAICNKRKKNFFPHGNDDDFCLPINSNQ-DKVLDIHAIEPPWLSEFTGVMRSAYGPVTAAKTIYEDDQGFLIIVSMPFVDLQRVKVTWRNTLSHGIVKISCVSIGCLPMIKRHDRTFKLTDPTPEHCPQGEFVREIPLPTRIPEDAKLEAYGDPTGTMLEILVPKHRVGPEEHEVRVCLRPSPWSE-RAYVDLTEALV 510
BLAST of XM_017367512.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RRG2 ((ATP-dependent 6-phosphofructokinase {ECO:0000313|EMBL:PSS32589.1}))
HSP 1 Score: 781.941 bits (2018), Expect = 0.000e+0
Identity = 400/517 (77.37%), Postives = 434/517 (83.95%), Query Frame = 0
Match: A0A2R6RRG2 ((ATP-dependent 6-phosphofructokinase {ECO:0000313|EMBL:PSS32589.1}))
HSP 1 Score: 781.941 bits (2018), Expect = 0.000e+0
Identity = 400/517 (77.37%), Postives = 434/517 (83.95%), Query Frame = 0
Query: 11 IDSTEVATIMPTKEKMGGAVITTLSMDSH-LCTLLSMDSSLSSHEEIERELNRAINVSSPPDINLPLSAEPSPPPPSWNDACDILDVSHAPQHYEAETHINLTKVGKKCAKRLDSVWGAWFFFNFYFKPALNEKSKSKIAVRDTNGVSGYDKT------DLKLDVFLVQHDMENMYMWVFKDRPDNALGKMQLRSYMNGHSRQGERPFPFSADKGFVRSHRMQRKHYRGLSNPQCVHGIEVVPSPNFAGLDEGECKKWMELTGRDLNFSIPLEASDFSSWRTLPVTELEIERLPP-LKNNVNQQPKRLLNGCGLKLSTQQPNHVNGEGMDLLANCNKRPKNYFAPENDYDCTLANNSSHSDGVVDAHSIEPHWVNEFTGVMRSTYGPVTAAKTIYEDDKGFLIIVSLPCADLQRVKVTWRNTPSHGIVKISCVSTGCMPIIKRQDRTFKLTDPTPEHCPPGEFVREITLPARIPEDAKLEAYGDETGTMLEIEVPKHRVGPEEHEVHVCLRPSPWRE 519
++ST V T T EKMG A +TTLSM+S+ TLLSMDS+ SSHE++ERELNR N S PPDINLPLSAEPSPPPPSWND CD+LDV A QHYE ET+IN+TK GKKCAKRLDSVWGAWFFF+FYFKPALNEKSKSKIA R++NGVSGYDK+ DLKLDVFLVQHDMENMYMWVFK+RP+NALGKMQLRSYMNGHSRQGE+PFPFS D+GF RSHRMQRK YRGLSNPQCVHGIEVV SPN G+DE E KKW+ELTGRD+NFSIPLEASDF SWR LP TE E+ER PP LK N N KRLLNG L LSTQ NH NG+G DL + CNKR KN+ + ND DC L NN D V+D H IEP+W+NEFTGVMRS YGPVTAAKTIYEDD+GFLI+V LP DLQRVKVTWRNT SHGIVKI+CVSTG MPIIKRQDRTFKLTDPTPEHCPPGEFVREI L RIPEDAKLEAY DETGTMLEI VPKH+VGPEEHEVHVCLRPSPW E
Sbjct: 1 MNSTSVTT-KSTNEKMGEAFLTTLSMESNRFSTLLSMDSNSSSHEDMERELNRGFNHSPPPDINLPLSAEPSPPPPSWNDTCDMLDVGLATQHYEGETNINVTKAGKKCAKRLDSVWGAWFFFSFYFKPALNEKSKSKIA-RESNGVSGYDKSSGYDKSDLKLDVFLVQHDMENMYMWVFKERPENALGKMQLRSYMNGHSRQGEKPFPFSVDRGFGRSHRMQRKQYRGLSNPQCVHGIEVVRSPNLTGIDEEELKKWIELTGRDINFSIPLEASDFGSWRNLPSTEFELERPPPPLKTNSNPHQKRLLNGSSLNLSTQVSNHANGDGTDL-SGCNKRRKNFLSNGNDDDCCLPNNIC-PDRVLDIHPIEPYWLNEFTGVMRSAYGPVTAAKTIYEDDEGFLIMVCLPFIDLQRVKVTWRNTLSHGIVKIACVSTGRMPIIKRQDRTFKLTDPTPEHCPPGEFVREIPLATRIPEDAKLEAYCDETGTMLEIIVPKHQVGPEEHEVHVCLRPSPWNE 513
BLAST of XM_017367512.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6W6T1 ((uncharacterized protein LOC113730506 {ECO:0000313|RefSeq:XP_027111019.1}))
HSP 1 Score: 780.785 bits (2015), Expect = 0.000e+0
Identity = 391/513 (76.22%), Postives = 435/513 (84.80%), Query Frame = 0
Match: A0A6P6W6T1 ((uncharacterized protein LOC113730506 {ECO:0000313|RefSeq:XP_027111019.1}))
HSP 1 Score: 780.785 bits (2015), Expect = 0.000e+0
Identity = 391/513 (76.22%), Postives = 435/513 (84.80%), Query Frame = 0
Query: 20 MPTKEKMGGAVITTLSMDSH-LCTLLSMDSSLSSHEEIERELNRAINVSSPPDINLPLSAEPSPPPPSWNDACDILDVSHAPQHYEAETHINLTKVGKKCAKRLDSVWGAWFFFNFYFKPALNEKSKSKIAVRDTNGVSGYDKTDLKLDVFLVQHDMENMYMWVFKDRPDNALGKMQLRSYMNGHSRQGERPFPFSADKGFVRSHRMQRKHYRGLSNPQCVHGIEVVPSPNFAGLDEGECKKWMELTGRDLNFSIPLEASDFSSWRTLPVTELEIERLPPLKNNVNQQPKRLLNGCGLKLSTQQPNHVNGEGMDLLANCNKRPKNYFAPENDYDCTLANNSSHSDGVVDAHSIEPHWVNEFTGVMRSTYGPVTAAKTIYEDDKGFLIIVSLPCADLQRVKVTWRNTPSHGIVKISCVSTGCMPIIKRQDRTFKLTDPTPEHCPPGEFVREITLPARIPEDAKLEAYGDETGTMLEIEVPKHRVGPEEHEVHVCLRPSPWREQRAYVDLTEALV 531
MP KEKMG ++T+LSM+S+ L TLL+MDSS S+HEE ERELNRA+N+ PPDIN+PLSAEPSPPPP WND+CD+LDV PQ YE E + TK+GKKCAKRLDSVWGAWFFF+FYFKP LNEKSK+K+ ++NG++GYDK+DLKLDVFLVQHDMENMYMWVFK+RP+NALGKMQLRSYMNGHSRQGER FPFS +KGFVRSHRMQRKHYRGLSNPQCVHGIEVV +PN LD+ E KKWMELTGRDLNFSIP EASDF SWR LP T+ E+ R P LK+N + PKRLL+G L LSTQ NH NG G++LLA CNKR KN+F ND D L NS+ D V+D H+IEP W++EFTGVMRS YGPVTAAKTIYEDD+GFLIIVS+P DLQRVKVTWRNT SHGIVKISCVS GC+P+IKR DRTFKLTDPTPEHCP GEFVREI LP RIPEDAKLEAYGD TGTMLEI VPKHRVGPEEHEV VCLRPSPW E RAYVDLTEALV
Sbjct: 1 MPAKEKMGEDLLTSLSMESNRLSTLLTMDSSSSNHEEAERELNRAVNLLQPPDINVPLSAEPSPPPPVWNDSCDMLDVGIGPQLYEVEANNIATKIGKKCAKRLDSVWGAWFFFSFYFKPVLNEKSKNKVTW-ESNGLNGYDKSDLKLDVFLVQHDMENMYMWVFKERPENALGKMQLRSYMNGHSRQGERLFPFSVEKGFVRSHRMQRKHYRGLSNPQCVHGIEVVRTPNLNILDDEERKKWMELTGRDLNFSIPPEASDFGSWRHLPNTDFELVRPPALKSNPSSHPKRLLSGSSLNLSTQTSNHSNGAGLELLAICNKRKKNFFPHVNDDDFCLPINSNQ-DKVLDIHAIEPPWLSEFTGVMRSAYGPVTAAKTIYEDDQGFLIIVSMPFVDLQRVKVTWRNTLSHGIVKISCVSIGCLPMIKRHDRTFKLTDPTPEHCPQGEFVREIPLPTRIPEDAKLEAYGDPTGTMLEILVPKHRVGPEEHEVRVCLRPSPWSE-RAYVDLTEALV 510
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7AQ44 | E-Value: 0.000e+0, PID: 79.21 | (Uncharacterized protein {ECO:0000313|EMBL:MPA5868... [more] |
| A0A5J5B866 | E-Value: 0.000e+0, PID: 77.53 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8539... [more] |
| A0A118K5X1 | E-Value: 0.000e+0, PID: 76.98 | (Uncharacterized protein {ECO:0000313|EMBL:KVI0979... [more] |
| A0A7J7H4D5 | E-Value: 0.000e+0, PID: 79.19 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5947... [more] |
| A0A5B7APU6 | E-Value: 0.000e+0, PID: 80.20 | (Uncharacterized protein {ECO:0000313|EMBL:MPA5868... [more] |
| A0A251UCV9 | E-Value: 0.000e+0, PID: 71.81 | (Putative FYD {ECO:0000313|EMBL:OTG21165.1})[more] |
| A0A5N6Q7S3 | E-Value: 0.000e+0, PID: 73.90 | (Uncharacterized protein {ECO:0000313|EMBL:KAD7480... [more] |
| A0A6P6VRD1 | E-Value: 0.000e+0, PID: 76.61 | (uncharacterized protein LOC113725485 {ECO:0000313... [more] |
| A0A2R6RRG2 | E-Value: 0.000e+0, PID: 77.37 | (ATP-dependent 6-phosphofructokinase {ECO:0000313|... [more] |
| A0A6P6W6T1 | E-Value: 0.000e+0, PID: 76.22 | (uncharacterized protein LOC113730506 {ECO:0000313... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |