XM_017367423.1

Resource Type: 
Polypeptide
Name: 
XM_017367423.1
Identifier: 
XM_017367423.1-protein
Sequence: 
MCMITKFTSFLANAMKAEIQGAREQLTEAPLHQTVLMTEMEKKSGTPQEI
AYDEIKDFFDSAPPLRDGNTVCKKLHEFLETNSSSTENGGSKRVVCVTSG
GTTVPLEQRCVRFIDNFSSGHRGATSTEYFLKAGYSVIFLYRRESYQPYC
TSLPDNPLLECFEMTDESFVQVHPSHSDAVKKAISNHQAAVKGGHLLKLP
FCTIFEYLQLIATSMKNLGPYAMYYLAAAVSDFYVPWESMAMHKIQSASG
PLDMRLAQVPKMLPVLRNDWAPMAFFISFKLETDRDILLKKADMALKKYK
MHVVVANELLTRKEEVTVVTPTGNISVRRDKTKGVTDVEGPLIKLLVEKH
SAHIEDSIKCS
Sequence Length: 
361
Sequence Checksum: 
c01a654f00503cf239f617f47183ee18
View location in JBrowse: 
DCARv2_Chr8:21427596..21434598-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017367423.1, derives from mRNA, XM_017367423.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017367423.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017367423.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7HTP8 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5955398.1}))

HSP 1 Score: 483.411 bits (1243), Expect = 3.166e-170
Identity = 234/317 (73.82%), Postives = 265/317 (83.60%), Query Frame = 0
 
Query:   44 SGTPQEIAYDEIKDFFDSAPPLRDGNTVCKKLHEFLETNSSSTENGGSKRVVCVTSGGTTVPLEQRCVRFIDNFSSGHRGATSTEYFLKAGYSVIFLYRRESYQPYCTSLPDNPLLECFEMTDESFVQVHPSHSDAVKKAISNHQAAVKGGHLLKLPFCTIFEY---LQLIATSMKNLGPYAMYYLAAAVSDFYVPWESMAMHKIQSASGPLDMRLAQVPKMLPVLRNDWAPMAFFISFKLETDRDILLKKADMALKKYKMHVVVANELLTRKEEVTVVTPTGNISVRRDKTKGVTDVEGPLIKLLVEKHSAHIEDS 357
            S TPQ+  Y+EIK FFDSAPPL+DG  + KKL+EF+E NS ST   G+ RVVCVTSGGTTVPLE+RCVR+IDNFSSGHRGA STEYFLKAGYSVIFLYRR S QP+C SLP++PLLECFE++ E  +QVH SHS+AVK+AI  H  AV+GG LLKLPF TIFEY   LQLIA SM+NL   AM+YLAAA SDFYVPW+SM  HKIQSASGPLDM+L QVPK L VLRNDWAPMAFFISFKLETD +ILL+KADMALKKYKMHVVVANEL TRKE+V VVT +  ISV RD T+   D+E PLIKLLVEKHS+++EDS
Sbjct:    7 SETPQDTLYEEIKSFFDSAPPLKDGPGISKKLNEFIERNSQSTGGEGTGRVVCVTSGGTTVPLEKRCVRYIDNFSSGHRGAASTEYFLKAGYSVIFLYRRGSCQPFCRSLPEDPLLECFEVSKELNIQVHQSHSEAVKRAIGEHCGAVEGGLLLKLPFTTIFEYLQILQLIAMSMRNLQTRAMFYLAAAASDFYVPWKSMVEHKIQSASGPLDMQLVQVPKTLSVLRNDWAPMAFFISFKLETDSNILLQKADMALKKYKMHVVVANELSTRKEKVVVVTSSEKISVLRDSTEADADIENPLIKLLVEKHSSYVEDS 323
[Close]
BLAST of XM_017367423.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7ANF8 ((Putative phosphopantothenate--cysteine ligase 2 isoform X1 {ECO:0000313|EMBL:MPA57346.1}) (6.3.2.5 {ECO:0000313|EMBL:MPA57346.1}))

HSP 1 Score: 481.1 bits (1237), Expect = 2.561e-169
Identity = 236/314 (75.16%), Postives = 259/314 (82.48%), Query Frame = 0
 
Query:   47 PQEIAYDEIKDFFDSAPPLRDGNTVCKKLHEFLETNSSSTENGGSKRVVCVTSGGTTVPLEQRCVRFIDNFSSGHRGATSTEYFLKAGYSVIFLYRRESYQPYCTSLPDNPLLECFEMTDESFVQVHPSHSDAVKKAISNHQAAVKGGHLLKLPFCTIFEY---LQLIATSMKNLGPYAMYYLAAAVSDFYVPWESMAMHKIQSASGPLDMRLAQVPKMLPVLRNDWAPMAFFISFKLETDRDILLKKADMALKKYKMHVVVANELLTRKEEVTVVTPTGNISVRRDKTKGVTDVEGPLIKLLVEKHSAHIEDS 357
            PQE  Y EIK FFDSAPPLRDG  + +KL EF+E NS S E+    RVVCVTSGGTTVPLEQRCVR+IDNFSSGHRGA STEYFLKAGYSVIFLYRR + QPYC SLPDNPLLECFE  +ES +QV  SHS+AVK+AIS H AAV GG LLKLPF TIFEY   LQLIA  M++LGP A++YLAAAVSDFYVPWESMA HKIQS SGPLDMRL QVPKML VLR  WAPMAF ISFKLETD  ILL+KADMALK Y+MH+VVANEL TRKEEV VVT +G I V RDK++   DVE PLI+LLVE+HSA+IEDS
Sbjct:   10 PQETLYTEIKSFFDSAPPLRDGLDISRKLKEFIERNSCSPESERGGRVVCVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEYFLKAGYSVIFLYRRGTCQPYCRSLPDNPLLECFEAINESNIQVCQSHSEAVKRAISEHHAAVAGGLLLKLPFTTIFEYLQILQLIALPMRSLGPRAIFYLAAAVSDFYVPWESMAEHKIQSGSGPLDMRLVQVPKMLSVLREVWAPMAFCISFKLETDSKILLEKADMALKMYRMHMVVANELSTRKEEVVVVTSSGKIPVHRDKSQAGADVESPLIELLVERHSAYIEDS 323
[Close]
BLAST of XM_017367423.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AMP7 ((Putative phosphopantothenate--cysteine ligase 2 isoform X1 {ECO:0000313|EMBL:MPA57345.1}) (6.3.2.5 {ECO:0000313|EMBL:MPA57345.1}))

HSP 1 Score: 480.33 bits (1235), Expect = 6.628e-169
Identity = 236/314 (75.16%), Postives = 258/314 (82.17%), Query Frame = 0
 
Query:   47 PQEIAYDEIKDFFDSAPPLRDGNTVCKKLHEFLETNSSSTENGGSKRVVCVTSGGTTVPLEQRCVRFIDNFSSGHRGATSTEYFLKAGYSVIFLYRRESYQPYCTSLPDNPLLECFEMTDESFVQVHPSHSDAVKKAISNHQAAVKGGHLLKLPFCTIFEY---LQLIATSMKNLGPYAMYYLAAAVSDFYVPWESMAMHKIQSASGPLDMRLAQVPKMLPVLRNDWAPMAFFISFKLETDRDILLKKADMALKKYKMHVVVANELLTRKEEVTVVTPTGNISVRRDKTKGVTDVEGPLIKLLVEKHSAHIEDS 357
            PQE  Y EIK FFDSAPPLRDG  + +KL EF+E NS S E+    RVVCVTSGGTTVPLEQRCVR+IDNFSSGHRGA STEYFLKAGYSVIFLYRR + QPYC SLPDNPLLECFE  +ES +QV  SHS+AVK+AIS H AAV GG LLKLPF TIFEY   LQLIA  M++LGP A++YLAAAVSDFYVPWESMA HKIQS SGPLDMRL QVPKML VLR  WAPMAF ISFKLETD  ILL+KAD+ALKKY+MH VVANELLTRKEEV VVT +G I V RDKT+   D+E  LIKLL E+HSA+IEDS
Sbjct:   10 PQETLYTEIKSFFDSAPPLRDGLDISRKLKEFIERNSCSPESERGGRVVCVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEYFLKAGYSVIFLYRRGTCQPYCRSLPDNPLLECFEAINESNIQVCQSHSEAVKRAISEHHAAVAGGLLLKLPFTTIFEYLQILQLIALPMRSLGPRAIFYLAAAVSDFYVPWESMAEHKIQSGSGPLDMRLVQVPKMLSVLREVWAPMAFCISFKLETDSKILLEKADIALKKYRMHAVVANELLTRKEEVVVVTSSGKIPVCRDKTRAGADIEDSLIKLLAERHSAYIEDS 323
[Close]
BLAST of XM_017367423.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251LJK7 ((Uncharacterized protein {ECO:0000313|EMBL:OAY58201.1}))

HSP 1 Score: 477.248 bits (1227), Expect = 8.746e-168
Identity = 228/309 (73.79%), Postives = 262/309 (84.79%), Query Frame = 0
 
Query:   54 EIKDFFDSAPPLRDGNTVCKKLHEFLETNSSSTENGGSKRVVCVTSGGTTVPLEQRCVRFIDNFSSGHRGATSTEYFLKAGYSVIFLYRRESYQPYCTSLPDNPLLECFEMTDESFVQVHPSHSDAVKKAISNHQAAVKGGHLLKLPFCTIFEYLQL---IATSMKNLGPYAMYYLAAAVSDFYVPWESMAMHKIQSASGPLDMRLAQVPKMLPVLRNDWAPMAFFISFKLETDRDILLKKADMALKKYKMHVVVANELLTRKEEVTVVTPTGNISVRRDKTKGVTDVEGPLIKLLVEKHSAHIEDSIK 359
            EIK FFDSAPPLRD   +  KL EF++ NS+   N   +RVVCVTSGGTTVPLEQRCVR+IDNFSSGHRG+TSTEYF+KAGY+VIFLYRR + QPYC SLP++PLLECFE T+ S VQV  S+S+AVK+AI++H AA+  GHLLKLPF TIFEYLQ+   IA SM++LGP+AM+YLAAAVSDFYVPW+ MA HKIQSASGPLDMRL QVPKML VLR +WAPMAF ISFKLETD  ILL+KADMALKKYKMH+V+ANELLTRKEEVTVVT    I VRRDKT+  +DVE PLI+LLVEKHSAHI+D+ K
Sbjct:   12 EIKSFFDSAPPLRDSAGITNKLKEFIQLNSAPQGNASPRRVVCVTSGGTTVPLEQRCVRYIDNFSSGHRGSTSTEYFIKAGYAVIFLYRRGTCQPYCRSLPEDPLLECFEFTNGSNVQVRQSYSEAVKRAINDHHAAIAAGHLLKLPFTTIFEYLQMLQMIAISMRDLGPHAMFYLAAAVSDFYVPWKDMAEHKIQSASGPLDMRLVQVPKMLSVLRKEWAPMAFCISFKLETDTKILLEKADMALKKYKMHMVIANELLTRKEEVTVVTADKKIPVRRDKTQAGSDVEKPLIELLVEKHSAHIKDADK 320
[Close]
BLAST of XM_017367423.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2N592 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:QL12p035494:mrna}))

HSP 1 Score: 473.011 bits (1216), Expect = 4.879e-166
Identity = 227/314 (72.29%), Postives = 265/314 (84.39%), Query Frame = 0
 
Query:   45 GTPQEIAYDEIKDFFDSAPPLRDGNTVCKKLHEFLETNSSSTENGGSKRVVCVTSGGTTVPLEQRCVRFIDNFSSGHRGATSTEYFLKAGYSVIFLYRRESYQPYCTSLPDNPLLECFEMTDESFVQVHPSHSDAVKKAISNHQAAVKGGHLLKLPFCTIFEY---LQLIATSMKNLGPYAMYYLAAAVSDFYVPWESMAMHKIQSASGPLDMRLAQVPKMLPVLRNDWAPMAFFISFKLETDRDILLKKADMALKKYKMHVVVANELLTRKEEVTVVTPTGNISVRRDKTKGVTDVEGPLIKLLVEKHSAHIE 355
            G PQE    EIK FF+SAPPL++ + + +KL +F+E NS S  NG ++RVVCVTSGGTTVPLEQRCVR+IDNFSSGHRGATSTEYF+KAGY+VIFLYRR SYQPYC SLP++PLLECFE TDES ++V  SHS+AVKKAIS H AAV  G LLKLPF TIFEY   LQ++ATS+++LG +AM+YLAAAVSDFYVPW+SMA HKIQSASGPLDMRL QVPKML VLR DWAPMAF ISFKLETD  ILL+KAD++LKKYKMH+VVANELLTRK+EV VVT    ISVRRDKT+    VE PLI+++VE+HS ++E
Sbjct:    8 GVPQETLDAEIKSFFESAPPLKNSDDIGEKLKKFIERNSLSLGNGEARRVVCVTSGGTTVPLEQRCVRYIDNFSSGHRGATSTEYFIKAGYAVIFLYRRGSYQPYCRSLPEDPLLECFEYTDESSIRVRESHSEAVKKAISEHHAAVAEGFLLKLPFTTIFEYLQILQMVATSLRSLGAHAMFYLAAAVSDFYVPWKSMAEHKIQSASGPLDMRLVQVPKMLSVLRKDWAPMAFCISFKLETDIKILLEKADISLKKYKMHMVVANELLTRKDEVVVVTSNEKISVRRDKTQVGDVVENPLIRVIVERHSTYVE 321
[Close]
BLAST of XM_017367423.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5B427 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8538015.1}))

HSP 1 Score: 472.241 bits (1214), Expect = 1.085e-165
Identity = 232/317 (73.19%), Postives = 255/317 (80.44%), Query Frame = 0
 
Query:   44 SGTPQEIAYDEIKDFFDSAPPLRDGNTVCKKLHEFLETNSSSTENGGSKRVVCVTSGGTTVPLEQRCVRFIDNFSSGHRGATSTEYFLKAGYSVIFLYRRESYQPYCTSLPDNPLLECFEMTDESFVQVHPSHSDAVKKAISNHQAAVKGGHLLKLPFCTIFEY---LQLIATSMKNLGPYAMYYLAAAVSDFYVPWESMAMHKIQSASGPLDMRLAQVPKMLPVLRNDWAPMAFFISFKLETDRDILLKKADMALKKYKMHVVVANELLTRKEEVTVVTPTGNISVRRDKTKGVTDVEGPLIKLLVEKHSAHIEDS 357
            S   QE  Y EIK FFDSAPPLRD   + +KL EFL+ NS S  +    R+VCVTSGGTTVPLEQRCVR+IDNFSSGHRGA STEYFLKAGYSVIFLYRR + QPYC SLPD+PLLECFE   +S +QV   HS+AVK+AIS H  AV  G LLKLPF TIFEY   LQLIA SM++LG +AM+YLAAAVSDFYVPWESMA HKIQS SGPLDMRL QVPKML VLR +W PMAF ISFKLETD  ILL+KADMAL KY+MHVVVANEL TRKEEV VVT +G  SVRRDKT+   DVE PLI+LLVEKHSA+IEDS
Sbjct:    7 SEASQETLYTEIKSFFDSAPPLRDAPDISRKLDEFLKWNSVSPGSERGSRIVCVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEYFLKAGYSVIFLYRRGTCQPYCRSLPDDPLLECFESASDSNIQVRQLHSEAVKRAISEHNVAVAKGLLLKLPFTTIFEYLQILQLIALSMRSLGAHAMFYLAAAVSDFYVPWESMAEHKIQSGSGPLDMRLVQVPKMLSVLRKEWVPMAFCISFKLETDSKILLEKADMALTKYRMHVVVANELSTRKEEVVVVTSSGKFSVRRDKTQAGADVESPLIELLVEKHSAYIEDS 323
[Close]
BLAST of XM_017367423.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A067KCM3 (DFP domain-containing protein {ECO:0000259|Pfam:PF04127})

HSP 1 Score: 470.315 bits (1209), Expect = 5.162e-165
Identity = 227/323 (70.28%), Postives = 265/323 (82.04%), Query Frame = 0
 
Query:   40 MEKKSGTPQEIAYD----EIKDFFDSAPPLRDGNTVCKKLHEFLETNSSSTENGGSKRVVCVTSGGTTVPLEQRCVRFIDNFSSGHRGATSTEYFLKAGYSVIFLYRRESYQPYCTSLPDNPLLECFEMTDESFVQVHPSHSDAVKKAISNHQAAVKGGHLLKLPFCTIFEY---LQLIATSMKNLGPYAMYYLAAAVSDFYVPWESMAMHKIQSASGPLDMRLAQVPKMLPVLRNDWAPMAFFISFKLETDRDILLKKADMALKKYKMHVVVANELLTRKEEVTVVTPTGNISVRRDKTKGVTDVEGPLIKLLVEKHSAHIE 355
            ME  +GT  E+       EI+ FF+SAPPL+D   + KKL EF+E NS++  NG ++RVVCV+SGGTTVPLEQRCVR+IDNFSSGHRGATSTEYF+ AGY+VI+LYRR ++QPYC SLPD+PLLECFE  DES +QV   +S+AVK+AI+ H  AV  GHLLKLPF TIFEY   LQ+IA S++NLGP+ M+YLAAAVSDFYVPW+ MA HKIQSASGPLDMRL QVPKML VLR +WAPMAF ISFKLETD +ILL+KADMALKKYKMHVVVANELLTRKEEV VVT    I V RDKT+  +DVE PLI+LLVE+HSAHI+
Sbjct:    1 MESTNGTAIEVPLGQVNAEIESFFESAPPLKDSADISKKLKEFIELNSATPGNGSARRVVCVSSGGTTVPLEQRCVRYIDNFSSGHRGATSTEYFINAGYAVIYLYRRGTFQPYCRSLPDDPLLECFEFIDESDIQVRQPYSEAVKRAINGHHTAVAAGHLLKLPFTTIFEYLQMLQMIAISIRNLGPHTMFYLAAAVSDFYVPWKDMAEHKIQSASGPLDMRLVQVPKMLSVLRKEWAPMAFCISFKLETDSEILLQKADMALKKYKMHVVVANELLTRKEEVIVVTSDEKIHVCRDKTRPGSDVEKPLIELLVERHSAHIK 323
[Close]
BLAST of XM_017367423.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9TEE4 ((phosphopantothenate--cysteine ligase 2 {ECO:0000313|RefSeq:XP_011083404.1, ECO:0000313|RefSeq:XP_011083405.1}))

HSP 1 Score: 466.848 bits (1200), Expect = 1.433e-163
Identity = 222/312 (71.15%), Postives = 262/312 (83.97%), Query Frame = 0
 
Query:   48 QEIAYDEIKDFFDSAPPLRDG--NTVCKKLHEFLETNSSSTENGGSKRVVCVTSGGTTVPLEQRCVRFIDNFSSGHRGATSTEYFLKAGYSVIFLYRRESYQPYCTSLPDNPLLECFEMTDESFVQVHPSHSDAVKKAISNHQAAVKGGHLLKLPFCTIFEYLQL---IATSMKNLGPYAMYYLAAAVSDFYVPWESMAMHKIQSASGPLDMRLAQVPKMLPVLRNDWAPMAFFISFKLETDRDILLKKADMALKKYKMHVVVANELLTRKEEVTVVTPTGNISVRRDKTKGVTDVEGPLIKLLVEKHSAHI 354
            +EI Y +IK FFDSAP L D     + ++L  F+  NSS +ENG ++RVVCVTSGGTTVPLEQRCVR+IDNFSSGHRGA STEYFLKAGY+V+FLYR+ + QPYC+SLPD+PLLECFE++ ES + VH +H++ VK AIS+H+AA+  G LLKLPF TIFEYLQ+   IA SM++LGP AM+YLAAAVSDFYVPWESMA+HKIQSASGPLD+RLAQVPKMLPVLR DWAPMAF ISFKLETD  ILL+KADMALKKY MH+VVANEL TRKEEV VVT  GNI++RRD T    DVE PL+KL+V++HSA+I
Sbjct:   11 EEIPYADIKSFFDSAPSLGDAAETKIKEELENFIRRNSSPSENGTARRVVCVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEYFLKAGYAVVFLYRKGTCQPYCSSLPDDPLLECFEVSSESNITVHQTHAEKVKGAISDHRAAIARGSLLKLPFTTIFEYLQILQFIALSMRSLGPNAMFYLAAAVSDFYVPWESMALHKIQSASGPLDIRLAQVPKMLPVLRKDWAPMAFCISFKLETDTKILLEKADMALKKYNMHMVVANELKTRKEEVIVVTKNGNITIRRDMTHAGADVEEPLVKLIVDRHSAYI 322
[Close]
BLAST of XM_017367423.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S4CSA9 ((phosphopantothenate--cysteine ligase 2-like {ECO:0000313|RefSeq:XP_016503958.1, ECO:0000313|RefSeq:XP_016503959.1}))

HSP 1 Score: 463.766 bits (1192), Expect = 1.829e-162
Identity = 230/324 (70.99%), Postives = 263/324 (81.17%), Query Frame = 0
 
Query:   37 MTEMEKKSGTPQEIAYDEIKDFFDSAPPLRDGNTVCKKLHEFLETNSSSTENGGSKRVVCVTSGGTTVPLEQRCVRFIDNFSSGHRGATSTEYFLKAGYSVIFLYRRESYQPYCTSLPDNPLLECFEMTDESFVQVHPSHSDAVKKAISNHQAAVKGGHLLKLPFCTIFEYLQ---LIATSMKNLGPYAMYYLAAAVSDFYVPWESMAMHKIQSASGPLDMRLAQVPKMLPVLRNDWAPMAFFISFKLETDRDILLKKADMALKKYKMHVVVANELLTRKEEVTVVTPTGNISVRRDKTKGVTDVEGPLIKLLVEKHSAHIEDS 357
            M  M      P E A  +IK FF+SAPPL+D   +  KL EF+  NSSS+ENG   RVVCVTSGGTTVPLE+RCVR+IDNFSSGHRGA STEYFLKAGYSVIFLYRR + QP+C SLPD+PLLECF  TD S +QV PSH++ VK+AIS +++AV GG LLKLPF TIFEYLQ   LIA S+++ GP AM+YLAAAVSDFYVPWESM +HKIQS SGPLDMRLAQVPKML VLRN+WAP+AF ISFKLETD DILL KADMALKKYKMH+VVANEL TRKEEV VVT    I+VRRDKT+   DVE PLIKL+V++HSA+I+ S
Sbjct:    1 MDSMNGIDNVP-ETATRKIKAFFESAPPLKDVAEIETKLKEFVYRNSSSSENGKINRVVCVTSGGTTVPLEKRCVRYIDNFSSGHRGAASTEYFLKAGYSVIFLYRRGTCQPFCRSLPDDPLLECFTSTDHSSIQVDPSHAEVVKRAISENRSAVNGGFLLKLPFTTIFEYLQILRLIAGSLRSRGPSAMFYLAAAVSDFYVPWESMTVHKIQSGSGPLDMRLAQVPKMLYVLRNEWAPVAFCISFKLETDTDILLGKADMALKKYKMHMVVANELSTRKEEVIVVTEQEKIAVRRDKTQAGADVEDPLIKLVVDRHSAYIKHS 323
[Close]
BLAST of XM_017367423.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7WQ35 ((phosphopantothenate--cysteine ligase 2-like {ECO:0000313|RefSeq:XP_009780692.1, ECO:0000313|RefSeq:XP_009780693.1}))

HSP 1 Score: 463.766 bits (1192), Expect = 1.829e-162
Identity = 230/324 (70.99%), Postives = 263/324 (81.17%), Query Frame = 0
 
Query:   37 MTEMEKKSGTPQEIAYDEIKDFFDSAPPLRDGNTVCKKLHEFLETNSSSTENGGSKRVVCVTSGGTTVPLEQRCVRFIDNFSSGHRGATSTEYFLKAGYSVIFLYRRESYQPYCTSLPDNPLLECFEMTDESFVQVHPSHSDAVKKAISNHQAAVKGGHLLKLPFCTIFEYLQ---LIATSMKNLGPYAMYYLAAAVSDFYVPWESMAMHKIQSASGPLDMRLAQVPKMLPVLRNDWAPMAFFISFKLETDRDILLKKADMALKKYKMHVVVANELLTRKEEVTVVTPTGNISVRRDKTKGVTDVEGPLIKLLVEKHSAHIEDS 357
            M  M      P E A  +IK FF+SAPPL+D   +  KL EF+  NSSS+ENG   RVVCVTSGGTTVPLE+RCVR+IDNFSSGHRGA STEYFLKAGYSVIFLYRR + QP+C SLPD+PLLECF  TD S +QV PSH++ VK+AIS +++AV GG LLKLPF TIFEYLQ   LIA S+++ GP AM+YLAAAVSDFYVPWESM +HKIQS SGPLDMRLAQVPKML VLRN+WAP+AF ISFKLETD DILL KADMALKKYKMH+VVANEL TRKEEV VVT    I+VRRDKT+   DVE PLIKL+V++HSA+I+ S
Sbjct:    1 MDSMNGIDNVP-ETATRKIKAFFESAPPLKDVAEIETKLKEFVYRNSSSSENGKINRVVCVTSGGTTVPLEKRCVRYIDNFSSGHRGAASTEYFLKAGYSVIFLYRRGTCQPFCRSLPDDPLLECFTSTDHSSIQVDPSHAEVVKRAISENRSAVNGGFLLKLPFTTIFEYLQILRLIAGSLRSRGPSAMFYLAAAVSDFYVPWESMTVHKIQSGSGPLDMRLAQVPKMLYVLRNEWAPVAFCISFKLETDTDILLGKADMALKKYKMHMVVANELSTRKEEVIVVTEQEKIAVRRDKTQAGADVEDPLIKLVVDRHSAYIKHS 323
Match NameStatsDescription
A0A7J7HTP8E-Value: 3.166e-170, PID: 73.82(Uncharacterized protein {ECO:0000313|EMBL:KAF5955... [more]
A0A5B7ANF8E-Value: 2.561e-169, PID: 75.16(Putative phosphopantothenate--cysteine ligase 2 i... [more]
A0A5B7AMP7E-Value: 6.628e-169, PID: 75.16(Putative phosphopantothenate--cysteine ligase 2 i... [more]
A0A251LJK7E-Value: 8.746e-168, PID: 73.79(Uncharacterized protein {ECO:0000313|EMBL:OAY5820... [more]
A0A7N2N592E-Value: 4.879e-166, PID: 72.29(Uncharacterized protein {ECO:0000313|EnsemblPlant... [more]
A0A5J5B427E-Value: 1.085e-165, PID: 73.19(Uncharacterized protein {ECO:0000313|EMBL:KAA8538... [more]
A0A067KCM3E-Value: 5.162e-165, PID: 70.28DFP domain-containing protein {ECO:0000259|Pfam:PF... [more]
A0A6I9TEE4E-Value: 1.433e-163, PID: 71.15(phosphopantothenate--cysteine ligase 2 {ECO:00003... [more]
A0A1S4CSA9E-Value: 1.829e-162, PID: 70.99(phosphopantothenate--cysteine ligase 2-like {ECO:... [more]
A0A1U7WQ35E-Value: 1.829e-162, PID: 70.99(phosphopantothenate--cysteine ligase 2-like {ECO:... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.