Resource Type:
Polypeptide
Name:
XM_017367424.1
Identifier:
XM_017367424.1-protein
Sequence:
MTEMEKKSGTPQEIAYDEIKDFFDSAPPLRDGNTVCKKLHEFLETNSSST
ENGGSKRVVCVTSGGTTVPLEQRCVRFIDNFSSGHRGATSTEYFLKAGYS
VIFLYRRESYQPYCTSLPDNPLLECFEMTDESFVQVHPSHSDAVKKAISN
HQAAVKGGHLLKLPFCTIFEYLQILQLIATSMKNLGPYAMYYLAAAVSDF
YVPWESMAMHKIQSASGPLDMRLAQVPKMLPVLRNDWAPMAFFISFKLET
DRDILLKKADMALKKYKMHVVVANELLTRKEEVTVVTPTGNISVRRDKTK
GVTDVEGPLIKLLVEKHSAHIEDSIKCS
Sequence Length:
328
Sequence Checksum:
95bb1ba1379c3b9d9e89ee26ab6e97a5
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017367424.1, derives from mRNA, XM_017367424.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017367424.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017367424.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7HTP8 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5955398.1}))
HSP 1 Score: 493.426 bits (1269), Expect = 1.027e-174
Identity = 237/317 (74.76%), Postives = 268/317 (84.54%), Query Frame = 0
Match: A0A7J7HTP8 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5955398.1}))
HSP 1 Score: 493.426 bits (1269), Expect = 1.027e-174
Identity = 237/317 (74.76%), Postives = 268/317 (84.54%), Query Frame = 0
Query: 8 SGTPQEIAYDEIKDFFDSAPPLRDGNTVCKKLHEFLETNSSSTENGGSKRVVCVTSGGTTVPLEQRCVRFIDNFSSGHRGATSTEYFLKAGYSVIFLYRRESYQPYCTSLPDNPLLECFEMTDESFVQVHPSHSDAVKKAISNHQAAVKGGHLLKLPFCTIFEYLQILQLIATSMKNLGPYAMYYLAAAVSDFYVPWESMAMHKIQSASGPLDMRLAQVPKMLPVLRNDWAPMAFFISFKLETDRDILLKKADMALKKYKMHVVVANELLTRKEEVTVVTPTGNISVRRDKTKGVTDVEGPLIKLLVEKHSAHIEDS 324
S TPQ+ Y+EIK FFDSAPPL+DG + KKL+EF+E NS ST G+ RVVCVTSGGTTVPLE+RCVR+IDNFSSGHRGA STEYFLKAGYSVIFLYRR S QP+C SLP++PLLECFE++ E +QVH SHS+AVK+AI H AV+GG LLKLPF TIFEYLQILQLIA SM+NL AM+YLAAA SDFYVPW+SM HKIQSASGPLDM+L QVPK L VLRNDWAPMAFFISFKLETD +ILL+KADMALKKYKMHVVVANEL TRKE+V VVT + ISV RD T+ D+E PLIKLLVEKHS+++EDS
Sbjct: 7 SETPQDTLYEEIKSFFDSAPPLKDGPGISKKLNEFIERNSQSTGGEGTGRVVCVTSGGTTVPLEKRCVRYIDNFSSGHRGAASTEYFLKAGYSVIFLYRRGSCQPFCRSLPEDPLLECFEVSKELNIQVHQSHSEAVKRAIGEHCGAVEGGLLLKLPFTTIFEYLQILQLIAMSMRNLQTRAMFYLAAAASDFYVPWKSMVEHKIQSASGPLDMQLVQVPKTLSVLRNDWAPMAFFISFKLETDSNILLQKADMALKKYKMHVVVANELSTRKEKVVVVTSSEKISVLRDSTEADADIENPLIKLLVEKHSSYVEDS 323
BLAST of XM_017367424.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7ANF8 ((Putative phosphopantothenate--cysteine ligase 2 isoform X1 {ECO:0000313|EMBL:MPA57346.1}) (6.3.2.5 {ECO:0000313|EMBL:MPA57346.1}))
HSP 1 Score: 491.115 bits (1263), Expect = 1.047e-173
Identity = 239/314 (76.11%), Postives = 262/314 (83.44%), Query Frame = 0
Match: A0A5B7ANF8 ((Putative phosphopantothenate--cysteine ligase 2 isoform X1 {ECO:0000313|EMBL:MPA57346.1}) (6.3.2.5 {ECO:0000313|EMBL:MPA57346.1}))
HSP 1 Score: 491.115 bits (1263), Expect = 1.047e-173
Identity = 239/314 (76.11%), Postives = 262/314 (83.44%), Query Frame = 0
Query: 11 PQEIAYDEIKDFFDSAPPLRDGNTVCKKLHEFLETNSSSTENGGSKRVVCVTSGGTTVPLEQRCVRFIDNFSSGHRGATSTEYFLKAGYSVIFLYRRESYQPYCTSLPDNPLLECFEMTDESFVQVHPSHSDAVKKAISNHQAAVKGGHLLKLPFCTIFEYLQILQLIATSMKNLGPYAMYYLAAAVSDFYVPWESMAMHKIQSASGPLDMRLAQVPKMLPVLRNDWAPMAFFISFKLETDRDILLKKADMALKKYKMHVVVANELLTRKEEVTVVTPTGNISVRRDKTKGVTDVEGPLIKLLVEKHSAHIEDS 324
PQE Y EIK FFDSAPPLRDG + +KL EF+E NS S E+ RVVCVTSGGTTVPLEQRCVR+IDNFSSGHRGA STEYFLKAGYSVIFLYRR + QPYC SLPDNPLLECFE +ES +QV SHS+AVK+AIS H AAV GG LLKLPF TIFEYLQILQLIA M++LGP A++YLAAAVSDFYVPWESMA HKIQS SGPLDMRL QVPKML VLR WAPMAF ISFKLETD ILL+KADMALK Y+MH+VVANEL TRKEEV VVT +G I V RDK++ DVE PLI+LLVE+HSA+IEDS
Sbjct: 10 PQETLYTEIKSFFDSAPPLRDGLDISRKLKEFIERNSCSPESERGGRVVCVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEYFLKAGYSVIFLYRRGTCQPYCRSLPDNPLLECFEAINESNIQVCQSHSEAVKRAISEHHAAVAGGLLLKLPFTTIFEYLQILQLIALPMRSLGPRAIFYLAAAVSDFYVPWESMAEHKIQSGSGPLDMRLVQVPKMLSVLREVWAPMAFCISFKLETDSKILLEKADMALKMYRMHMVVANELSTRKEEVVVVTSSGKIPVHRDKSQAGADVESPLIELLVERHSAYIEDS 323
BLAST of XM_017367424.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AMP7 ((Putative phosphopantothenate--cysteine ligase 2 isoform X1 {ECO:0000313|EMBL:MPA57345.1}) (6.3.2.5 {ECO:0000313|EMBL:MPA57345.1}))
HSP 1 Score: 490.345 bits (1261), Expect = 1.953e-173
Identity = 239/314 (76.11%), Postives = 261/314 (83.12%), Query Frame = 0
Match: A0A5B7AMP7 ((Putative phosphopantothenate--cysteine ligase 2 isoform X1 {ECO:0000313|EMBL:MPA57345.1}) (6.3.2.5 {ECO:0000313|EMBL:MPA57345.1}))
HSP 1 Score: 490.345 bits (1261), Expect = 1.953e-173
Identity = 239/314 (76.11%), Postives = 261/314 (83.12%), Query Frame = 0
Query: 11 PQEIAYDEIKDFFDSAPPLRDGNTVCKKLHEFLETNSSSTENGGSKRVVCVTSGGTTVPLEQRCVRFIDNFSSGHRGATSTEYFLKAGYSVIFLYRRESYQPYCTSLPDNPLLECFEMTDESFVQVHPSHSDAVKKAISNHQAAVKGGHLLKLPFCTIFEYLQILQLIATSMKNLGPYAMYYLAAAVSDFYVPWESMAMHKIQSASGPLDMRLAQVPKMLPVLRNDWAPMAFFISFKLETDRDILLKKADMALKKYKMHVVVANELLTRKEEVTVVTPTGNISVRRDKTKGVTDVEGPLIKLLVEKHSAHIEDS 324
PQE Y EIK FFDSAPPLRDG + +KL EF+E NS S E+ RVVCVTSGGTTVPLEQRCVR+IDNFSSGHRGA STEYFLKAGYSVIFLYRR + QPYC SLPDNPLLECFE +ES +QV SHS+AVK+AIS H AAV GG LLKLPF TIFEYLQILQLIA M++LGP A++YLAAAVSDFYVPWESMA HKIQS SGPLDMRL QVPKML VLR WAPMAF ISFKLETD ILL+KAD+ALKKY+MH VVANELLTRKEEV VVT +G I V RDKT+ D+E LIKLL E+HSA+IEDS
Sbjct: 10 PQETLYTEIKSFFDSAPPLRDGLDISRKLKEFIERNSCSPESERGGRVVCVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEYFLKAGYSVIFLYRRGTCQPYCRSLPDNPLLECFEAINESNIQVCQSHSEAVKRAISEHHAAVAGGLLLKLPFTTIFEYLQILQLIALPMRSLGPRAIFYLAAAVSDFYVPWESMAEHKIQSGSGPLDMRLVQVPKMLSVLREVWAPMAFCISFKLETDSKILLEKADIALKKYRMHAVVANELLTRKEEVVVVTSSGKIPVCRDKTRAGADIEDSLIKLLAERHSAYIEDS 323
BLAST of XM_017367424.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251LJK7 ((Uncharacterized protein {ECO:0000313|EMBL:OAY58201.1}))
HSP 1 Score: 485.723 bits (1249), Expect = 1.095e-171
Identity = 230/309 (74.43%), Postives = 265/309 (85.76%), Query Frame = 0
Match: A0A251LJK7 ((Uncharacterized protein {ECO:0000313|EMBL:OAY58201.1}))
HSP 1 Score: 485.723 bits (1249), Expect = 1.095e-171
Identity = 230/309 (74.43%), Postives = 265/309 (85.76%), Query Frame = 0
Query: 18 EIKDFFDSAPPLRDGNTVCKKLHEFLETNSSSTENGGSKRVVCVTSGGTTVPLEQRCVRFIDNFSSGHRGATSTEYFLKAGYSVIFLYRRESYQPYCTSLPDNPLLECFEMTDESFVQVHPSHSDAVKKAISNHQAAVKGGHLLKLPFCTIFEYLQILQLIATSMKNLGPYAMYYLAAAVSDFYVPWESMAMHKIQSASGPLDMRLAQVPKMLPVLRNDWAPMAFFISFKLETDRDILLKKADMALKKYKMHVVVANELLTRKEEVTVVTPTGNISVRRDKTKGVTDVEGPLIKLLVEKHSAHIEDSIK 326
EIK FFDSAPPLRD + KL EF++ NS+ N +RVVCVTSGGTTVPLEQRCVR+IDNFSSGHRG+TSTEYF+KAGY+VIFLYRR + QPYC SLP++PLLECFE T+ S VQV S+S+AVK+AI++H AA+ GHLLKLPF TIFEYLQ+LQ+IA SM++LGP+AM+YLAAAVSDFYVPW+ MA HKIQSASGPLDMRL QVPKML VLR +WAPMAF ISFKLETD ILL+KADMALKKYKMH+V+ANELLTRKEEVTVVT I VRRDKT+ +DVE PLI+LLVEKHSAHI+D+ K
Sbjct: 12 EIKSFFDSAPPLRDSAGITNKLKEFIQLNSAPQGNASPRRVVCVTSGGTTVPLEQRCVRYIDNFSSGHRGSTSTEYFIKAGYAVIFLYRRGTCQPYCRSLPEDPLLECFEFTNGSNVQVRQSYSEAVKRAINDHHAAIAAGHLLKLPFTTIFEYLQMLQMIAISMRDLGPHAMFYLAAAVSDFYVPWKDMAEHKIQSASGPLDMRLVQVPKMLSVLRKEWAPMAFCISFKLETDTKILLEKADMALKKYKMHMVIANELLTRKEEVTVVTADKKIPVRRDKTQAGSDVEKPLIELLVEKHSAHIKDADK 320
BLAST of XM_017367424.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2N592 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:QL12p035494:mrna}))
HSP 1 Score: 483.411 bits (1243), Expect = 1.159e-170
Identity = 230/314 (73.25%), Postives = 268/314 (85.35%), Query Frame = 0
Match: A0A7N2N592 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:QL12p035494:mrna}))
HSP 1 Score: 483.411 bits (1243), Expect = 1.159e-170
Identity = 230/314 (73.25%), Postives = 268/314 (85.35%), Query Frame = 0
Query: 9 GTPQEIAYDEIKDFFDSAPPLRDGNTVCKKLHEFLETNSSSTENGGSKRVVCVTSGGTTVPLEQRCVRFIDNFSSGHRGATSTEYFLKAGYSVIFLYRRESYQPYCTSLPDNPLLECFEMTDESFVQVHPSHSDAVKKAISNHQAAVKGGHLLKLPFCTIFEYLQILQLIATSMKNLGPYAMYYLAAAVSDFYVPWESMAMHKIQSASGPLDMRLAQVPKMLPVLRNDWAPMAFFISFKLETDRDILLKKADMALKKYKMHVVVANELLTRKEEVTVVTPTGNISVRRDKTKGVTDVEGPLIKLLVEKHSAHIE 322
G PQE EIK FF+SAPPL++ + + +KL +F+E NS S NG ++RVVCVTSGGTTVPLEQRCVR+IDNFSSGHRGATSTEYF+KAGY+VIFLYRR SYQPYC SLP++PLLECFE TDES ++V SHS+AVKKAIS H AAV G LLKLPF TIFEYLQILQ++ATS+++LG +AM+YLAAAVSDFYVPW+SMA HKIQSASGPLDMRL QVPKML VLR DWAPMAF ISFKLETD ILL+KAD++LKKYKMH+VVANELLTRK+EV VVT ISVRRDKT+ VE PLI+++VE+HS ++E
Sbjct: 8 GVPQETLDAEIKSFFESAPPLKNSDDIGEKLKKFIERNSLSLGNGEARRVVCVTSGGTTVPLEQRCVRYIDNFSSGHRGATSTEYFIKAGYAVIFLYRRGSYQPYCRSLPEDPLLECFEYTDESSIRVRESHSEAVKKAISEHHAAVAEGFLLKLPFTTIFEYLQILQMVATSLRSLGAHAMFYLAAAVSDFYVPWKSMAEHKIQSASGPLDMRLVQVPKMLSVLRKDWAPMAFCISFKLETDIKILLEKADISLKKYKMHMVVANELLTRKDEVVVVTSNEKISVRRDKTQVGDVVENPLIRVIVERHSTYVE 321
BLAST of XM_017367424.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5B427 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8538015.1}))
HSP 1 Score: 482.256 bits (1240), Expect = 2.523e-170
Identity = 235/317 (74.13%), Postives = 258/317 (81.39%), Query Frame = 0
Match: A0A5J5B427 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8538015.1}))
HSP 1 Score: 482.256 bits (1240), Expect = 2.523e-170
Identity = 235/317 (74.13%), Postives = 258/317 (81.39%), Query Frame = 0
Query: 8 SGTPQEIAYDEIKDFFDSAPPLRDGNTVCKKLHEFLETNSSSTENGGSKRVVCVTSGGTTVPLEQRCVRFIDNFSSGHRGATSTEYFLKAGYSVIFLYRRESYQPYCTSLPDNPLLECFEMTDESFVQVHPSHSDAVKKAISNHQAAVKGGHLLKLPFCTIFEYLQILQLIATSMKNLGPYAMYYLAAAVSDFYVPWESMAMHKIQSASGPLDMRLAQVPKMLPVLRNDWAPMAFFISFKLETDRDILLKKADMALKKYKMHVVVANELLTRKEEVTVVTPTGNISVRRDKTKGVTDVEGPLIKLLVEKHSAHIEDS 324
S QE Y EIK FFDSAPPLRD + +KL EFL+ NS S + R+VCVTSGGTTVPLEQRCVR+IDNFSSGHRGA STEYFLKAGYSVIFLYRR + QPYC SLPD+PLLECFE +S +QV HS+AVK+AIS H AV G LLKLPF TIFEYLQILQLIA SM++LG +AM+YLAAAVSDFYVPWESMA HKIQS SGPLDMRL QVPKML VLR +W PMAF ISFKLETD ILL+KADMAL KY+MHVVVANEL TRKEEV VVT +G SVRRDKT+ DVE PLI+LLVEKHSA+IEDS
Sbjct: 7 SEASQETLYTEIKSFFDSAPPLRDAPDISRKLDEFLKWNSVSPGSERGSRIVCVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEYFLKAGYSVIFLYRRGTCQPYCRSLPDDPLLECFESASDSNIQVRQLHSEAVKRAISEHNVAVAKGLLLKLPFTTIFEYLQILQLIALSMRSLGAHAMFYLAAAVSDFYVPWESMAEHKIQSGSGPLDMRLVQVPKMLSVLRKEWVPMAFCISFKLETDSKILLEKADMALTKYRMHVVVANELSTRKEEVVVVTSSGKFSVRRDKTQAGADVESPLIELLVEKHSAYIEDS 323
BLAST of XM_017367424.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A067KCM3 (DFP domain-containing protein {ECO:0000259|Pfam:PF04127})
HSP 1 Score: 478.789 bits (1231), Expect = 7.163e-169
Identity = 229/323 (70.90%), Postives = 268/323 (82.97%), Query Frame = 0
Match: A0A067KCM3 (DFP domain-containing protein {ECO:0000259|Pfam:PF04127})
HSP 1 Score: 478.789 bits (1231), Expect = 7.163e-169
Identity = 229/323 (70.90%), Postives = 268/323 (82.97%), Query Frame = 0
Query: 4 MEKKSGTPQEIAYD----EIKDFFDSAPPLRDGNTVCKKLHEFLETNSSSTENGGSKRVVCVTSGGTTVPLEQRCVRFIDNFSSGHRGATSTEYFLKAGYSVIFLYRRESYQPYCTSLPDNPLLECFEMTDESFVQVHPSHSDAVKKAISNHQAAVKGGHLLKLPFCTIFEYLQILQLIATSMKNLGPYAMYYLAAAVSDFYVPWESMAMHKIQSASGPLDMRLAQVPKMLPVLRNDWAPMAFFISFKLETDRDILLKKADMALKKYKMHVVVANELLTRKEEVTVVTPTGNISVRRDKTKGVTDVEGPLIKLLVEKHSAHIE 322
ME +GT E+ EI+ FF+SAPPL+D + KKL EF+E NS++ NG ++RVVCV+SGGTTVPLEQRCVR+IDNFSSGHRGATSTEYF+ AGY+VI+LYRR ++QPYC SLPD+PLLECFE DES +QV +S+AVK+AI+ H AV GHLLKLPF TIFEYLQ+LQ+IA S++NLGP+ M+YLAAAVSDFYVPW+ MA HKIQSASGPLDMRL QVPKML VLR +WAPMAF ISFKLETD +ILL+KADMALKKYKMHVVVANELLTRKEEV VVT I V RDKT+ +DVE PLI+LLVE+HSAHI+
Sbjct: 1 MESTNGTAIEVPLGQVNAEIESFFESAPPLKDSADISKKLKEFIELNSATPGNGSARRVVCVSSGGTTVPLEQRCVRYIDNFSSGHRGATSTEYFINAGYAVIYLYRRGTFQPYCRSLPDDPLLECFEFIDESDIQVRQPYSEAVKRAINGHHTAVAAGHLLKLPFTTIFEYLQMLQMIAISIRNLGPHTMFYLAAAVSDFYVPWKDMAEHKIQSASGPLDMRLVQVPKMLSVLRKEWAPMAFCISFKLETDSEILLQKADMALKKYKMHVVVANELLTRKEEVIVVTSDEKIHVCRDKTRPGSDVEKPLIELLVERHSAHIK 323
BLAST of XM_017367424.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9TEE4 ((phosphopantothenate--cysteine ligase 2 {ECO:0000313|RefSeq:XP_011083404.1, ECO:0000313|RefSeq:XP_011083405.1}))
HSP 1 Score: 476.478 bits (1225), Expect = 6.666e-168
Identity = 225/312 (72.12%), Postives = 264/312 (84.62%), Query Frame = 0
Match: A0A6I9TEE4 ((phosphopantothenate--cysteine ligase 2 {ECO:0000313|RefSeq:XP_011083404.1, ECO:0000313|RefSeq:XP_011083405.1}))
HSP 1 Score: 476.478 bits (1225), Expect = 6.666e-168
Identity = 225/312 (72.12%), Postives = 264/312 (84.62%), Query Frame = 0
Query: 12 QEIAYDEIKDFFDSAPPLRDG--NTVCKKLHEFLETNSSSTENGGSKRVVCVTSGGTTVPLEQRCVRFIDNFSSGHRGATSTEYFLKAGYSVIFLYRRESYQPYCTSLPDNPLLECFEMTDESFVQVHPSHSDAVKKAISNHQAAVKGGHLLKLPFCTIFEYLQILQLIATSMKNLGPYAMYYLAAAVSDFYVPWESMAMHKIQSASGPLDMRLAQVPKMLPVLRNDWAPMAFFISFKLETDRDILLKKADMALKKYKMHVVVANELLTRKEEVTVVTPTGNISVRRDKTKGVTDVEGPLIKLLVEKHSAHI 321
+EI Y +IK FFDSAP L D + ++L F+ NSS +ENG ++RVVCVTSGGTTVPLEQRCVR+IDNFSSGHRGA STEYFLKAGY+V+FLYR+ + QPYC+SLPD+PLLECFE++ ES + VH +H++ VK AIS+H+AA+ G LLKLPF TIFEYLQILQ IA SM++LGP AM+YLAAAVSDFYVPWESMA+HKIQSASGPLD+RLAQVPKMLPVLR DWAPMAF ISFKLETD ILL+KADMALKKY MH+VVANEL TRKEEV VVT GNI++RRD T DVE PL+KL+V++HSA+I
Sbjct: 11 EEIPYADIKSFFDSAPSLGDAAETKIKEELENFIRRNSSPSENGTARRVVCVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEYFLKAGYAVVFLYRKGTCQPYCSSLPDDPLLECFEVSSESNITVHQTHAEKVKGAISDHRAAIARGSLLKLPFTTIFEYLQILQFIALSMRSLGPNAMFYLAAAVSDFYVPWESMALHKIQSASGPLDIRLAQVPKMLPVLRKDWAPMAFCISFKLETDTKILLEKADMALKKYNMHMVVANELKTRKEEVIVVTKNGNITIRRDMTHAGADVEEPLVKLIVDRHSAYI 322
BLAST of XM_017367424.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6UGT4 ((phosphopantothenate--cysteine ligase 2-like {ECO:0000313|RefSeq:XP_027090080.1}))
HSP 1 Score: 471.855 bits (1213), Expect = 3.645e-166
Identity = 224/313 (71.57%), Postives = 264/313 (84.35%), Query Frame = 0
Match: A0A6P6UGT4 ((phosphopantothenate--cysteine ligase 2-like {ECO:0000313|RefSeq:XP_027090080.1}))
HSP 1 Score: 471.855 bits (1213), Expect = 3.645e-166
Identity = 224/313 (71.57%), Postives = 264/313 (84.35%), Query Frame = 0
Query: 12 QEIAYDEIKDFFDSAPPLRDGNTVCKKLHEFLETNSSSTENGGSKRVVCVTSGGTTVPLEQRCVRFIDNFSSGHRGATSTEYFLKAGYSVIFLYRRESYQPYCTSLPDNPLLECFEMTDESFVQVHPSHSDAVKKAISNHQAAVKGGHLLKLPFCTIFEYLQILQLIATSMKNLGPYAMYYLAAAVSDFYVPWESMAMHKIQSASGPLDMRLAQVPKMLPVLRNDWAPMAFFISFKLETDRDILLKKADMALKKYKMHVVVANELLTRKEEVTVVTPTGNISVRRDKTKGVTDVEGPLIKLLVEKHSAHIEDS 324
QE EIK FFDSAPPL+D + + +KL EF+E NSS+ ENG RVVCVTSGGTTVPLEQRCVR+IDNFSSGHRGA STEYFLKAGYSVIFLYRR S QPYC+SLPD+PLLECF++TD+S +QVHPSH++ VK+AIS H+AAV GG+LLKLPF TIFEYLQILQLIA S+ LG AM+Y AAAVSDFYVPWE + HK+QSASGPLD+RLAQVPKM+ VLR WAPMAF ISFKLETD +ILL KA MAL+K K+H+VVANEL TRK+EV VV +GNI VRRDK + +VE PL++LLV++HSA+I+++
Sbjct: 10 QETPSVEIKSFFDSAPPLKDADEISRKLKEFVERNSSTPENGRVTRVVCVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEYFLKAGYSVIFLYRRGSCQPYCSSLPDDPLLECFDITDDSKIQVHPSHAEVVKRAISEHRAAVVGGNLLKLPFTTIFEYLQILQLIADSVSKLGRSAMFYFAAAVSDFYVPWELLTEHKLQSASGPLDIRLAQVPKMISVLRKAWAPMAFCISFKLETDSNILLAKAAMALEKNKVHMVVANELSTRKDEVIVVAKSGNIVVRRDKAQPGAEVESPLVELLVDRHSAYIKEA 322
BLAST of XM_017367424.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9I4Q7 ((Uncharacterized protein {ECO:0000313|EMBL:PIN24731.1}))
HSP 1 Score: 471.855 bits (1213), Expect = 3.673e-166
Identity = 217/304 (71.38%), Postives = 261/304 (85.86%), Query Frame = 0
Match: A0A2G9I4Q7 ((Uncharacterized protein {ECO:0000313|EMBL:PIN24731.1}))
HSP 1 Score: 471.855 bits (1213), Expect = 3.673e-166
Identity = 217/304 (71.38%), Postives = 261/304 (85.86%), Query Frame = 0
Query: 18 EIKDFFDSAPPLRDGNTVCKKLHEFLETNSSSTENGGSKRVVCVTSGGTTVPLEQRCVRFIDNFSSGHRGATSTEYFLKAGYSVIFLYRRESYQPYCTSLPDNPLLECFEMTDESFVQVHPSHSDAVKKAISNHQAAVKGGHLLKLPFCTIFEYLQILQLIATSMKNLGPYAMYYLAAAVSDFYVPWESMAMHKIQSASGPLDMRLAQVPKMLPVLRNDWAPMAFFISFKLETDRDILLKKADMALKKYKMHVVVANELLTRKEEVTVVTPTGNISVRRDKTKGVTDVEGPLIKLLVEKHSAHI 321
+IK FFDSAPPL++ + +KL EF+E N SS+ENG ++RVVCVTSGGTTVPLE+RCVR+IDNF+SGHRGA STEYFLKAGY+V+FL+RR +YQPYC SLP++PLLECFE+T ES + V P+H+ AVK+AIS H AAV G LLKL F T+FEYLQ+LQLIA SM++LGP AM+YLAAAVSDFYVPWESMA HKIQS SGPLDMRLA+VPKML +LR WAPMAF ISFKLETD +LL+KADMAL+KY MH+V+ANEL+T KEEV VV +GNI+VRRDKT+ D+E PLIKL+V++HSA+I
Sbjct: 16 DIKSFFDSAPPLKNDAEIRRKLKEFIERNHSSSENGRARRVVCVTSGGTTVPLEKRCVRYIDNFASGHRGAASTEYFLKAGYAVVFLHRRRTYQPYCRSLPEDPLLECFEVTSESNITVQPTHAKAVKEAISEHHAAVTQGTLLKLSFTTVFEYLQMLQLIALSMRSLGPRAMFYLAAAVSDFYVPWESMAAHKIQSGSGPLDMRLAEVPKMLSMLRKVWAPMAFCISFKLETDTKLLLEKADMALRKYNMHMVIANELITHKEEVVVVMKSGNITVRRDKTQATADIEDPLIKLIVDRHSAYI 319
| Match Name | Stats | Description |
|---|---|---|
| A0A7J7HTP8 | E-Value: 1.027e-174, PID: 74.76 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5955... [more] |
| A0A5B7ANF8 | E-Value: 1.047e-173, PID: 76.11 | (Putative phosphopantothenate--cysteine ligase 2 i... [more] |
| A0A5B7AMP7 | E-Value: 1.953e-173, PID: 76.11 | (Putative phosphopantothenate--cysteine ligase 2 i... [more] |
| A0A251LJK7 | E-Value: 1.095e-171, PID: 74.43 | (Uncharacterized protein {ECO:0000313|EMBL:OAY5820... [more] |
| A0A7N2N592 | E-Value: 1.159e-170, PID: 73.25 | (Uncharacterized protein {ECO:0000313|EnsemblPlant... [more] |
| A0A5J5B427 | E-Value: 2.523e-170, PID: 74.13 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8538... [more] |
| A0A067KCM3 | E-Value: 7.163e-169, PID: 70.90 | DFP domain-containing protein {ECO:0000259|Pfam:PF... [more] |
| A0A6I9TEE4 | E-Value: 6.666e-168, PID: 72.12 | (phosphopantothenate--cysteine ligase 2 {ECO:00003... [more] |
| A0A6P6UGT4 | E-Value: 3.645e-166, PID: 71.57 | (phosphopantothenate--cysteine ligase 2-like {ECO:... [more] |
| A0A2G9I4Q7 | E-Value: 3.673e-166, PID: 71.38 | (Uncharacterized protein {ECO:0000313|EMBL:PIN2473... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |