Resource Type:
Polypeptide
Name:
XM_017367346.1
Identifier:
XM_017367346.1-protein
Sequence:
MSLLSFHPTGYISLNGSPRKRLSFSYSLHSPHTYFYIHQFAKPHSWIFKL
HQHLRERSDLRKEMSFTGTQQKCKVCEKTVYPMELLSADGVDFHKSCFRC
THCKGTLKLGNYSSMEGVLYCKPHFEQLFKESGNYNKNFQSPAKSADKLT
PELTRSPSKAAGMFSGTQEKCATCGKTAYPLEKVTVENQSYHKTCFKCSH
GGCSITPSTYAALEGILYCKHHFSQLFKEKGSYNHLLKSASIKRPVASVP
EA
Sequence Length:
252
Sequence Checksum:
f5f798f058cae78398cd951056d230cb
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017367346.1, derives from mRNA, XM_017367346.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017367346.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
back to top
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017367346.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6L5BBQ1 ((Uncharacterized protein {ECO:0000313|EMBL:KAF1001454.1}))
HSP 1 Score: 375.17 bits (962), Expect = 2.417e-131
Identity = 182/189 (96.30%), Postives = 185/189 (97.88%), Query Frame = 0
HSP 2 Score: 85.1149 bits (209), Expect = 9.468e-18
Identity = 38/87 (43.68%), Postives = 57/87 (65.52%), Query Frame = 0
Match: A0A6L5BBQ1 ((Uncharacterized protein {ECO:0000313|EMBL:KAF1001454.1}))
HSP 1 Score: 375.17 bits (962), Expect = 2.417e-131
Identity = 182/189 (96.30%), Postives = 185/189 (97.88%), Query Frame = 0
Query: 64 MSFTGTQQKCKVCEKTVYPMELLSADGVDFHKSCFRCTHCKGTLKLGNYSSMEGVLYCKPHFEQLFKESGNYNKNFQSPAKSADKLTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEKVTVENQSYHKTCFKCSHGGCSITPSTYAALEGILYCKHHFSQLFKEKGSYNHLLKSASIKRPVASVPEA 252
MSFTGTQQKCKVCEKTVYPMELLSADGVDFHKSCFRCTHCKGTLKLGNYSSMEGVLYCKPHFEQLFKESGNYNKNFQS AKS +KLTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEKVTVE+QSYHKTCFKCSHGGC ITPSTYAALEGILYCKHHFSQLFKEKGSYNHLLKSAS+KRPVA VPEA
Sbjct: 1 MSFTGTQQKCKVCEKTVYPMELLSADGVDFHKSCFRCTHCKGTLKLGNYSSMEGVLYCKPHFEQLFKESGNYNKNFQSSAKSVEKLTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEKVTVESQSYHKTCFKCSHGGCFITPSTYAALEGILYCKHHFSQLFKEKGSYNHLLKSASMKRPVAPVPEA 189
HSP 2 Score: 85.1149 bits (209), Expect = 9.468e-18
Identity = 38/87 (43.68%), Postives = 57/87 (65.52%), Query Frame = 0
Query: 57 RSDLRKEMSFTGTQQKCKVCEKTVYPMELLSADGVDFHKSCFRCTHCKGTLKLGNYSSMEGVLYCKPHFEQLFKESGNYNKNFQSPA 143
RS + F+GTQ+KC C KT YP+E ++ + +HK+CF+C+H + Y+++EG+LYCK HF QLFKE G+YN +S +
Sbjct: 92 RSPSKAAGMFSGTQEKCATCGKTAYPLEKVTVESQSYHKTCFKCSHGGCFITPSTYAALEGILYCKHHFSQLFKEKGSYNHLLKSAS 178
BLAST of XM_017367346.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RRA2 ((LIM domain-containing protein {ECO:0000313|EMBL:PSS32553.1}))
HSP 1 Score: 362.844 bits (930), Expect = 1.572e-126
Identity = 172/189 (91.01%), Postives = 183/189 (96.83%), Query Frame = 0
HSP 2 Score: 90.1225 bits (222), Expect = 1.410e-19
Identity = 43/98 (43.88%), Postives = 61/98 (62.24%), Query Frame = 0
Match: A0A2R6RRA2 ((LIM domain-containing protein {ECO:0000313|EMBL:PSS32553.1}))
HSP 1 Score: 362.844 bits (930), Expect = 1.572e-126
Identity = 172/189 (91.01%), Postives = 183/189 (96.83%), Query Frame = 0
Query: 64 MSFTGTQQKCKVCEKTVYPMELLSADGVDFHKSCFRCTHCKGTLKLGNYSSMEGVLYCKPHFEQLFKESGNYNKNFQSPAKSADKLTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEKVTVENQSYHKTCFKCSHGGCSITPSTYAALEGILYCKHHFSQLFKEKGSYNHLLKSASIKRPVASVPEA 252
MSFTGTQQKCK CEKTVYP+ELLSADGV +HKSCF+C+HCKGTLKL NYSSMEGVLYCKPHFEQLFKE+G++NKNFQSPAKSADKLTPELTRSPSKAA MFSGTQEKCATCGKTAYPLEKVTVE+Q+YHKTCFKCSHGGCSITPS YAALEGILYCKHHFSQLFKEKGSYNHLLKSAS+KRP AS+PEA
Sbjct: 1 MSFTGTQQKCKACEKTVYPVELLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKETGSFNKNFQSPAKSADKLTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEKVTVESQAYHKTCFKCSHGGCSITPSNYAALEGILYCKHHFSQLFKEKGSYNHLLKSASMKRPTASIPEA 189
HSP 2 Score: 90.1225 bits (222), Expect = 1.410e-19
Identity = 43/98 (43.88%), Postives = 61/98 (62.24%), Query Frame = 0
Query: 39 QFAKPHSWIFKLHQHLRERSDLRKEMSFTGTQQKCKVCEKTVYPMELLSADGVDFHKSCFRCTHCKGTLKLGNYSSMEGVLYCKPHFEQLFKESGNYN 136
F P KL L RS + F+GTQ+KC C KT YP+E ++ + +HK+CF+C+H ++ NY+++EG+LYCK HF QLFKE G+YN
Sbjct: 75 NFQSPAKSADKLTPELT-RSPSKAASMFSGTQEKCATCGKTAYPLEKVTVESQAYHKTCFKCSHGGCSITPSNYAALEGILYCKHHFSQLFKEKGSYN 171
BLAST of XM_017367346.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0EAV4 ((GATA type zinc finger transcription factor family protein {ECO:0000313|EMBL:GFY83525.1}))
HSP 1 Score: 362.844 bits (930), Expect = 1.572e-126
Identity = 172/189 (91.01%), Postives = 183/189 (96.83%), Query Frame = 0
HSP 2 Score: 90.1225 bits (222), Expect = 1.410e-19
Identity = 43/98 (43.88%), Postives = 61/98 (62.24%), Query Frame = 0
Match: A0A7J0EAV4 ((GATA type zinc finger transcription factor family protein {ECO:0000313|EMBL:GFY83525.1}))
HSP 1 Score: 362.844 bits (930), Expect = 1.572e-126
Identity = 172/189 (91.01%), Postives = 183/189 (96.83%), Query Frame = 0
Query: 64 MSFTGTQQKCKVCEKTVYPMELLSADGVDFHKSCFRCTHCKGTLKLGNYSSMEGVLYCKPHFEQLFKESGNYNKNFQSPAKSADKLTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEKVTVENQSYHKTCFKCSHGGCSITPSTYAALEGILYCKHHFSQLFKEKGSYNHLLKSASIKRPVASVPEA 252
MSFTGTQQKCK CEKTVYP+ELLSADGV +HKSCF+C+HCKGTLKL NYSSMEGVLYCKPHFEQLFKE+G++NKNFQSPAKSADKLTPELTRSPSKAA MFSGTQEKCATCGKTAYPLEKVTVE+Q+YHKTCFKCSHGGCSITPS YAALEGILYCKHHFSQLFKEKGSYNHLLKSAS+KRP AS+PEA
Sbjct: 1 MSFTGTQQKCKACEKTVYPVELLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKETGSFNKNFQSPAKSADKLTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEKVTVESQAYHKTCFKCSHGGCSITPSNYAALEGILYCKHHFSQLFKEKGSYNHLLKSASMKRPTASIPEA 189
HSP 2 Score: 90.1225 bits (222), Expect = 1.410e-19
Identity = 43/98 (43.88%), Postives = 61/98 (62.24%), Query Frame = 0
Query: 39 QFAKPHSWIFKLHQHLRERSDLRKEMSFTGTQQKCKVCEKTVYPMELLSADGVDFHKSCFRCTHCKGTLKLGNYSSMEGVLYCKPHFEQLFKESGNYN 136
F P KL L RS + F+GTQ+KC C KT YP+E ++ + +HK+CF+C+H ++ NY+++EG+LYCK HF QLFKE G+YN
Sbjct: 75 NFQSPAKSADKLTPELT-RSPSKAASMFSGTQEKCATCGKTAYPLEKVTVESQAYHKTCFKCSHGGCSITPSNYAALEGILYCKHHFSQLFKEKGSYN 171
BLAST of XM_017367346.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834GHD1 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7132299.1}))
HSP 1 Score: 359.762 bits (922), Expect = 3.247e-125
Identity = 173/190 (91.05%), Postives = 184/190 (96.84%), Query Frame = 0
HSP 2 Score: 91.2781 bits (225), Expect = 5.169e-20
Identity = 44/97 (45.36%), Postives = 62/97 (63.92%), Query Frame = 0
Match: A0A834GHD1 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7132299.1}))
HSP 1 Score: 359.762 bits (922), Expect = 3.247e-125
Identity = 173/190 (91.05%), Postives = 184/190 (96.84%), Query Frame = 0
Query: 64 MSFTGTQQKCKVCEKTVYPMELLSADGVDFHKSCFRCTHCKGTLKLGNYSSMEGVLYCKPHFEQLFKESGNYNKNFQSPA-KSADKLTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEKVTVENQSYHKTCFKCSHGGCSITPSTYAALEGILYCKHHFSQLFKEKGSYNHLLKSASIKRPVASVPEA 252
MSFTGTQQKCK CEKTVYP+ELLSADGVD+HKSCF+C+HCKGTLKL NYSSMEGVLYCKPHFEQLFKESGN+NKNFQSPA KSA+KLT ELTRSPSKAAGMFSGTQEKCATCGKTAYPLEKVTVE+QSYHK+CFKCSHGGC+I+PS YAALEGILYCKHHFSQLFKEKGSYNHLLKSAS+KR VASVPEA
Sbjct: 1 MSFTGTQQKCKACEKTVYPVELLSADGVDYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNFNKNFQSPAAKSAEKLTAELTRSPSKAAGMFSGTQEKCATCGKTAYPLEKVTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLLKSASMKRAVASVPEA 190
HSP 2 Score: 91.2781 bits (225), Expect = 5.169e-20
Identity = 44/97 (45.36%), Postives = 62/97 (63.92%), Query Frame = 0
Query: 57 RSDLRKEMSFTGTQQKCKVCEKTVYPMELLSADGVDFHKSCFRCTHCKGTLKLGNYSSMEGVLYCKPHFEQLFKESGNYNKNFQSPA-KSADKLTPE 152
RS + F+GTQ+KC C KT YP+E ++ + +HKSCF+C+H + NY+++EG+LYCK HF QLFKE G+YN +S + K A PE
Sbjct: 93 RSPSKAAGMFSGTQEKCATCGKTAYPLEKVTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLLKSASMKRAVASVPE 189
BLAST of XM_017367346.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6UD56 ((LIM domain-containing protein WLIM2b {ECO:0000313|EMBL:KAA3454092.1}))
HSP 1 Score: 360.533 bits (924), Expect = 3.478e-125
Identity = 174/198 (87.88%), Postives = 185/198 (93.43%), Query Frame = 0
Match: A0A5B6UD56 ((LIM domain-containing protein WLIM2b {ECO:0000313|EMBL:KAA3454092.1}))
HSP 1 Score: 360.533 bits (924), Expect = 3.478e-125
Identity = 174/198 (87.88%), Postives = 185/198 (93.43%), Query Frame = 0
Query: 57 RSDLRK--EMSFTGTQQKCKVCEKTVYPMELLSADGVDFHKSCFRCTHCKGTLKLGNYSSMEGVLYCKPHFEQLFKESGNYNKNFQSPAKSADKLTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEKVTVENQSYHKTCFKCSHGGCSITPSTYAALEGILYCKHHFSQLFKEKGSYNHLLKSASIKRPVASVPEA 252
RSDL + MSFTGTQQKCK CEKTVYP+ELLSADG+ +HKSCF+C+HCKGTLKLGNYSSMEGV+YCKPHFEQLFKESGN+NKNFQS AKSA+KLTPELTRSPSKAA MFSGTQEKCATCGKTAYPLEKVTVE QSYHK+CFKCSHGGC ITPS YAALEGILYCKHHFSQLFKEKGSYNHL+KSASIKR ASVPEA
Sbjct: 16 RSDLSRILAMSFTGTQQKCKACEKTVYPVELLSADGIPYHKSCFKCSHCKGTLKLGNYSSMEGVVYCKPHFEQLFKESGNFNKNFQSSAKSAEKLTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEKVTVEGQSYHKSCFKCSHGGCPITPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASIKRAAASVPEA 213
BLAST of XM_017367346.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5D2WDC8 ((Uncharacterized protein {ECO:0000313|EMBL:TYI99448.1}))
HSP 1 Score: 359.377 bits (921), Expect = 5.022e-125
Identity = 171/189 (90.48%), Postives = 181/189 (95.77%), Query Frame = 0
HSP 2 Score: 94.3597 bits (233), Expect = 3.858e-21
Identity = 50/115 (43.48%), Postives = 68/115 (59.13%), Query Frame = 0
Match: A0A5D2WDC8 ((Uncharacterized protein {ECO:0000313|EMBL:TYI99448.1}))
HSP 1 Score: 359.377 bits (921), Expect = 5.022e-125
Identity = 171/189 (90.48%), Postives = 181/189 (95.77%), Query Frame = 0
Query: 64 MSFTGTQQKCKVCEKTVYPMELLSADGVDFHKSCFRCTHCKGTLKLGNYSSMEGVLYCKPHFEQLFKESGNYNKNFQSPAKSADKLTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEKVTVENQSYHKTCFKCSHGGCSITPSTYAALEGILYCKHHFSQLFKEKGSYNHLLKSASIKRPVASVPEA 252
MSFTGTQQKCK CEKTVYP+ELLSADG+ +HKSCF+C+HCKGTLKLGNYSSMEGV+YCKPHFEQLFKESGN+NKNFQSPAKSA+KLTPELTRSPSKAA MFSGTQEKCATCGKTAYPLEKVTVE QSYHK+CFKCSHGGC ITPS YAALEGILYCKHHFSQLFKEKGSYNHL+KSASIKR ASVPEA
Sbjct: 1 MSFTGTQQKCKACEKTVYPVELLSADGIPYHKSCFKCSHCKGTLKLGNYSSMEGVVYCKPHFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEKVTVEGQSYHKSCFKCSHGGCPITPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASIKRAAASVPEA 189
HSP 2 Score: 94.3597 bits (233), Expect = 3.858e-21
Identity = 50/115 (43.48%), Postives = 68/115 (59.13%), Query Frame = 0
Query: 39 QFAKPHSWIFKLHQHLRERSDLRKEMSFTGTQQKCKVCEKTVYPMELLSADGVDFHKSCFRCTHCKGTLKLGNYSSMEGVLYCKPHFEQLFKESGNYNKNFQSPA-KSADKLTPE 152
F P KL L RS + F+GTQ+KC C KT YP+E ++ +G +HKSCF+C+H + NY+++EG+LYCK HF QLFKE G+YN +S + K A PE
Sbjct: 75 NFQSPAKSAEKLTPELT-RSPSKAASMFSGTQEKCATCGKTAYPLEKVTVEGQSYHKSCFKCSHGGCPITPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASIKRAAASVPE 188
BLAST of XM_017367346.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RWU9 ((LIM domain-containing protein {ECO:0000313|EMBL:PSS34498.1}))
HSP 1 Score: 359.377 bits (921), Expect = 5.022e-125
Identity = 169/189 (89.42%), Postives = 183/189 (96.83%), Query Frame = 0
HSP 2 Score: 90.8929 bits (224), Expect = 7.063e-20
Identity = 44/98 (44.90%), Postives = 61/98 (62.24%), Query Frame = 0
Match: A0A2R6RWU9 ((LIM domain-containing protein {ECO:0000313|EMBL:PSS34498.1}))
HSP 1 Score: 359.377 bits (921), Expect = 5.022e-125
Identity = 169/189 (89.42%), Postives = 183/189 (96.83%), Query Frame = 0
Query: 64 MSFTGTQQKCKVCEKTVYPMELLSADGVDFHKSCFRCTHCKGTLKLGNYSSMEGVLYCKPHFEQLFKESGNYNKNFQSPAKSADKLTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEKVTVENQSYHKTCFKCSHGGCSITPSTYAALEGILYCKHHFSQLFKEKGSYNHLLKSASIKRPVASVPEA 252
MSF GTQQKCK CEKTVYP+ELLSADGV +HKSCF+C+HCKGTLKL NYSSMEGVLYCKPHFEQLFKE+G++NKNFQSPAKSA+KLTPELTRSPSKAA MFSGTQEKCATCGKTAYPLEKVTVE+Q+YHK+CFKCSHGGCSITPS YAALEGILYCKHHFSQLFKEKGSYNHLLKSAS+KRP+AS+PEA
Sbjct: 1 MSFIGTQQKCKACEKTVYPVELLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKETGSFNKNFQSPAKSAEKLTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEKVTVESQAYHKSCFKCSHGGCSITPSNYAALEGILYCKHHFSQLFKEKGSYNHLLKSASMKRPIASIPEA 189
HSP 2 Score: 90.8929 bits (224), Expect = 7.063e-20
Identity = 44/98 (44.90%), Postives = 61/98 (62.24%), Query Frame = 0
Query: 39 QFAKPHSWIFKLHQHLRERSDLRKEMSFTGTQQKCKVCEKTVYPMELLSADGVDFHKSCFRCTHCKGTLKLGNYSSMEGVLYCKPHFEQLFKESGNYN 136
F P KL L RS + F+GTQ+KC C KT YP+E ++ + +HKSCF+C+H ++ NY+++EG+LYCK HF QLFKE G+YN
Sbjct: 75 NFQSPAKSAEKLTPELT-RSPSKAASMFSGTQEKCATCGKTAYPLEKVTVESQAYHKSCFKCSHGGCSITPSNYAALEGILYCKHHFSQLFKEKGSYN 171
BLAST of XM_017367346.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0B0PQ93 ((LIM domain-containing protein WLIM2b {ECO:0000313|RefSeq:XP_017616613.1}) (Pollen-specific SF3 {ECO:0000313|EMBL:KHG27160.1}))
HSP 1 Score: 359.377 bits (921), Expect = 5.022e-125
Identity = 171/189 (90.48%), Postives = 181/189 (95.77%), Query Frame = 0
HSP 2 Score: 94.3597 bits (233), Expect = 3.858e-21
Identity = 50/115 (43.48%), Postives = 68/115 (59.13%), Query Frame = 0
Match: A0A0B0PQ93 ((LIM domain-containing protein WLIM2b {ECO:0000313|RefSeq:XP_017616613.1}) (Pollen-specific SF3 {ECO:0000313|EMBL:KHG27160.1}))
HSP 1 Score: 359.377 bits (921), Expect = 5.022e-125
Identity = 171/189 (90.48%), Postives = 181/189 (95.77%), Query Frame = 0
Query: 64 MSFTGTQQKCKVCEKTVYPMELLSADGVDFHKSCFRCTHCKGTLKLGNYSSMEGVLYCKPHFEQLFKESGNYNKNFQSPAKSADKLTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEKVTVENQSYHKTCFKCSHGGCSITPSTYAALEGILYCKHHFSQLFKEKGSYNHLLKSASIKRPVASVPEA 252
MSFTGTQQKCK CEKTVYP+ELLSADG+ +HKSCF+C+HCKGTLKLGNYSSMEGV+YCKPHFEQLFKESGN+NKNFQSPAKSA+KLTPELTRSPSKAA MFSGTQEKCATCGKTAYPLEKVTVE QSYHK+CFKCSHGGC ITPS YAALEGILYCKHHFSQLFKEKGSYNHL+KSASIKR ASVPEA
Sbjct: 1 MSFTGTQQKCKACEKTVYPVELLSADGIPYHKSCFKCSHCKGTLKLGNYSSMEGVVYCKPHFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEKVTVEGQSYHKSCFKCSHGGCPITPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASIKRAAASVPEA 189
HSP 2 Score: 94.3597 bits (233), Expect = 3.858e-21
Identity = 50/115 (43.48%), Postives = 68/115 (59.13%), Query Frame = 0
Query: 39 QFAKPHSWIFKLHQHLRERSDLRKEMSFTGTQQKCKVCEKTVYPMELLSADGVDFHKSCFRCTHCKGTLKLGNYSSMEGVLYCKPHFEQLFKESGNYNKNFQSPA-KSADKLTPE 152
F P KL L RS + F+GTQ+KC C KT YP+E ++ +G +HKSCF+C+H + NY+++EG+LYCK HF QLFKE G+YN +S + K A PE
Sbjct: 75 NFQSPAKSAEKLTPELT-RSPSKAASMFSGTQEKCATCGKTAYPLEKVTVEGQSYHKSCFKCSHGGCPITPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASIKRAAASVPE 188
BLAST of XM_017367346.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BER3 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8539641.1}))
HSP 1 Score: 358.992 bits (920), Expect = 6.253e-125
Identity = 168/189 (88.89%), Postives = 183/189 (96.83%), Query Frame = 0
HSP 2 Score: 90.8929 bits (224), Expect = 8.709e-20
Identity = 44/98 (44.90%), Postives = 60/98 (61.22%), Query Frame = 0
Match: A0A5J5BER3 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8539641.1}))
HSP 1 Score: 358.992 bits (920), Expect = 6.253e-125
Identity = 168/189 (88.89%), Postives = 183/189 (96.83%), Query Frame = 0
Query: 64 MSFTGTQQKCKVCEKTVYPMELLSADGVDFHKSCFRCTHCKGTLKLGNYSSMEGVLYCKPHFEQLFKESGNYNKNFQSPAKSADKLTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEKVTVENQSYHKTCFKCSHGGCSITPSTYAALEGILYCKHHFSQLFKEKGSYNHLLKSASIKRPVASVPEA 252
MSFTGTQQKCK CEKTVYP+ELLSADG+ +HKSCF+CTHCKGTLKL NYSSMEGVLYCKPHFEQLFKE+G++NKNFQSPAKSA+KLTPELTRSPSKAA MFSGTQEKCATCGKTAYPLEKVTVE+Q+YHK+CFKCSHGGC+ITPS YAALEGILYCKHHFSQLFKEKGSYNHL+KSAS+KRP AS+PEA
Sbjct: 1 MSFTGTQQKCKACEKTVYPVELLSADGISYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKPHFEQLFKETGSFNKNFQSPAKSAEKLTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEKVTVESQAYHKSCFKCSHGGCAITPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMKRPTASIPEA 189
HSP 2 Score: 90.8929 bits (224), Expect = 8.709e-20
Identity = 44/98 (44.90%), Postives = 60/98 (61.22%), Query Frame = 0
Query: 39 QFAKPHSWIFKLHQHLRERSDLRKEMSFTGTQQKCKVCEKTVYPMELLSADGVDFHKSCFRCTHCKGTLKLGNYSSMEGVLYCKPHFEQLFKESGNYN 136
F P KL L RS + F+GTQ+KC C KT YP+E ++ + +HKSCF+C+H + NY+++EG+LYCK HF QLFKE G+YN
Sbjct: 75 NFQSPAKSAEKLTPELT-RSPSKAASMFSGTQEKCATCGKTAYPLEKVTVESQAYHKSCFKCSHGGCAITPSNYAALEGILYCKHHFSQLFKEKGSYN 171
BLAST of XM_017367346.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5D2RZD0 ((Uncharacterized protein {ECO:0000313|EMBL:TYI45205.1}))
HSP 1 Score: 358.221 bits (918), Expect = 1.130e-124
Identity = 170/189 (89.95%), Postives = 181/189 (95.77%), Query Frame = 0
HSP 2 Score: 93.9745 bits (232), Expect = 4.423e-21
Identity = 50/115 (43.48%), Postives = 68/115 (59.13%), Query Frame = 0
Match: A0A5D2RZD0 ((Uncharacterized protein {ECO:0000313|EMBL:TYI45205.1}))
HSP 1 Score: 358.221 bits (918), Expect = 1.130e-124
Identity = 170/189 (89.95%), Postives = 181/189 (95.77%), Query Frame = 0
Query: 64 MSFTGTQQKCKVCEKTVYPMELLSADGVDFHKSCFRCTHCKGTLKLGNYSSMEGVLYCKPHFEQLFKESGNYNKNFQSPAKSADKLTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEKVTVENQSYHKTCFKCSHGGCSITPSTYAALEGILYCKHHFSQLFKEKGSYNHLLKSASIKRPVASVPEA 252
MSFTGTQQKCK CEKTVYP+ELLSADG+ +HKSCF+C+HCKGTLKLGNYSSMEGV+YCKPHFEQLFKESGN+NKNFQSPA+SA+KLTPELTRSPSKAA MFSGTQEKCATCGKTAYPLEKVTVE QSYHK+CFKCSHGGC ITPS YAALEGILYCKHHFSQLFKEKGSYNHL+KSASIKR ASVPEA
Sbjct: 1 MSFTGTQQKCKACEKTVYPVELLSADGIPYHKSCFKCSHCKGTLKLGNYSSMEGVVYCKPHFEQLFKESGNFNKNFQSPARSAEKLTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEKVTVEGQSYHKSCFKCSHGGCPITPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASIKRAAASVPEA 189
HSP 2 Score: 93.9745 bits (232), Expect = 4.423e-21
Identity = 50/115 (43.48%), Postives = 68/115 (59.13%), Query Frame = 0
Query: 39 QFAKPHSWIFKLHQHLRERSDLRKEMSFTGTQQKCKVCEKTVYPMELLSADGVDFHKSCFRCTHCKGTLKLGNYSSMEGVLYCKPHFEQLFKESGNYNKNFQSPA-KSADKLTPE 152
F P KL L RS + F+GTQ+KC C KT YP+E ++ +G +HKSCF+C+H + NY+++EG+LYCK HF QLFKE G+YN +S + K A PE
Sbjct: 75 NFQSPARSAEKLTPELT-RSPSKAASMFSGTQEKCATCGKTAYPLEKVTVEGQSYHKSCFKCSHGGCPITPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASIKRAAASVPE 188
| Match Name | Stats | Description |
|---|---|---|
| A0A6L5BBQ1 | E-Value: 2.417e-131, PID: 96.30 | (Uncharacterized protein {ECO:0000313|EMBL:KAF1001... [more] |
| A0A2R6RRA2 | E-Value: 1.572e-126, PID: 91.01 | (LIM domain-containing protein {ECO:0000313|EMBL:P... [more] |
| A0A7J0EAV4 | E-Value: 1.572e-126, PID: 91.01 | (GATA type zinc finger transcription factor family... [more] |
| A0A834GHD1 | E-Value: 3.247e-125, PID: 91.05 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7132... [more] |
| A0A5B6UD56 | E-Value: 3.478e-125, PID: 87.88 | (LIM domain-containing protein WLIM2b {ECO:0000313... [more] |
| A0A5D2WDC8 | E-Value: 5.022e-125, PID: 90.48 | (Uncharacterized protein {ECO:0000313|EMBL:TYI9944... [more] |
| A0A2R6RWU9 | E-Value: 5.022e-125, PID: 89.42 | (LIM domain-containing protein {ECO:0000313|EMBL:P... [more] |
| A0A0B0PQ93 | E-Value: 5.022e-125, PID: 90.48 | (LIM domain-containing protein WLIM2b {ECO:0000313... [more] |
| A0A5J5BER3 | E-Value: 6.253e-125, PID: 88.89 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8539... [more] |
| A0A5D2RZD0 | E-Value: 1.130e-124, PID: 89.95 | (Uncharacterized protein {ECO:0000313|EMBL:TYI4520... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |