BLAST of XM_017366990.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR Match: A0A2P6QV76 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
Query: 185 VSYMDLHKATNGFSSANLVGAGGFGSVYKGTFDQEYVRLLLGDSGIEDEIGIAIAIKVFNLQRRGAVKSFNTEYQTLNDIDHTYLVKLITTCTSVDQDGHDFRAILFEFMDQGSLEMWLHPTYKSNHHGPIKPRILTLYARISIGIDIAYALDYLHNQCKNQIIHCDLKPGNILIDKNMFARIADFGLAITLPEYPSMNLC---SSSTGIRGTTGYIAPEYGLGCKMTTKGDTYSFGILLLEMLTGKKPTNRMFRGGLNLHNFVSLSLPDDVIKITDPLMKVMTSANKGDDK--------RVEDCLTRMYSIGLACSKTSAKDRPDMRDVLYELESIR 511
VSY L KAT+GFSSANL+G G FGSVYKG ++ V +A+KVFN+ RGA KSF +EY+ L +I H LVK++T C+S+D G+DF+A+++EFMD GSL WLHP+ N P++L+L R+ I ID+A ALDYLHNQC+ I+HCDLKP N+L+DK + A ++DFGLA L E P+ N+ SSS GIRG+ GY APEYG+G +++T GD YSFGILLLEM TGK+PT+ MF GLNLHN+V +LP+ V +I++ L+ +AN + + ++E+CLT ++ IG+ACS S+ +R D+ D EL SIR
Sbjct: 184 VSYATLLKATDGFSSANLIGLGAFGSVYKGILAEDSV---------------TVAVKVFNMLHRGASKSFISEYEALRNIRHRNLVKILTACSSIDFSGNDFKALVYEFMDGGSLAEWLHPS-SGNEEVTEAPKLLSLVQRLDIAIDVASALDYLHNQCETPIVHCDLKPSNVLLDKELTAHVSDFGLARFLSE-PTNNVSINQSSSIGIRGSVGYAAPEYGMGSEVSTYGDVYSFGILLLEMFTGKRPTDHMFSDGLNLHNYVKTTLPERVSQISESLVLQEGTANVTEARSQLSVTAQKIEECLTLIFGIGIACSAESSTNRKDISDAATELHSIR 504
Query: 1 MLTGKKITDPMFDRSYKLQNFVSNALSDRVIDVIDPFNLHELS----------RYDAAMAMDCLEMLLDIGVRCALESPQFRPDIKDTLSILETVR 86
M TGK+ TD MF L N+V L +RV + + L E + A +CL ++ IG+ C+ ES R DI D + L ++R
Sbjct: 409 MFTGKRPTDHMFSDGLNLHNYVKTTLPERVSQISESLVLQEGTANVTEARSQLSVTAQKIEECLTLIFGIGIACSAESSTNRKDISDAATELHSIR 504
BLAST of XM_017366990.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR Match: A0A4S4ELQ3 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
Query: 169 RQLRDPSPQMAPNLATVSYMDLHKATNGFSSANLVGAGGFGSVYKGTF--DQEYVRLLLGDSGIEDEIGIAIAIKVFNLQRRGAVKSFNTEYQTLNDIDHTYLVKLITTCTSVDQDGHDFRAILFEFMDQGSLEMWLHPTYKSNHHGPIKPRILTLYARISIGIDIAYALDYLHNQCKNQIIHCDLKPGNILIDKNMFARIADFGLAITLPEYPSMNLCSSSTGIRGTTGYIAPEYGLGCKMTTKGDTYSFGILLLEMLTGKKPTNRMFRGGLNLHNFVSLSLPDDVIKITDPLM-------KVMTSANKGDDKRVEDCLTRMYSIGLACSKTSAKDRPDMRDVLYELESIRN 512
R + P + + VSY L KAT+GFSSANL+G G FGSVY+G D+E+V AIKV NLQ RGA+KSF E +TL +I H LV++IT+C+SVD G++F+A+++EFM GSLE WL+ + ++N G + + L L RI+I ID+A ALDYLH+QC+ IIHCDLKP NIL+D+ M A I DFGLA PE + N SSS G+RGT GY+APEYGLGC+++T GD YS+GILLLEM+TGK+PT MF G NLHNF ++LPD V++I DP++ T+ + ++ +CL M +IG+ACS S + R + ++L+EL ++N
Sbjct: 158 RTAQSTVPVLKESFLKVSYEKLLKATDGFSSANLIGFGSFGSVYRGILVQDREFVA----------------AIKVLNLQNRGAIKSFMAECETLRNIRHRNLVRIITSCSSVDFHGNEFKALVYEFMPNGSLERWLNASLETND-GQNEQQRLNLLQRINIAIDVACALDYLHHQCQKPIIHCDLKPSNILLDREMVAHIGDFGLARFFPELTNPNQ-SSSIGVRGTIGYVAPEYGLGCEISTYGDVYSYGILLLEMITGKRPTENMFEEGHNLHNFARMALPDRVMEIADPVLLDNEEEEARATTIQVNNGSKIVECLISMVNIGVACSTESPQGRMSISNILHELHLVKN 492
Query: 1 MLTGKKITDPMFDRSYKLQNFVSNALSDRVIDVIDPF---NLHELSRY------DAAMAMDCLEMLLDIGVRCALESPQFRPDIKDTLSILETVR 86
M+TGK+ T+ MF+ + L NF AL DRV+++ DP N E +R + + ++CL +++IGV C+ ESPQ R I + L L V+
Sbjct: 397 MITGKRPTENMFEEGHNLHNFARMALPDRVMEIADPVLLDNEEEEARATTIQVNNGSKIVECLISMVNIGVACSTESPQGRMSISNILHELHLVK 491
BLAST of XM_017366990.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR Match: V4SLI2 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
Query: 168 TRQLRDPS-PQMAPNLATVSYMDLHKATNGFSSANLVGAGGFGSVYKGTFDQEYVRLLLGDSGIEDEIGIAIAIKVFNLQRRGAVKSFNTEYQTLNDIDHTYLVKLITTCTSVDQDGHDFRAILFEFMDQGSLEMWLHPTYKSNHHGPIKPRILTLYARISIGIDIAYALDYLHNQCKNQIIHCDLKPGNILIDKNMFARIADFGLAITLPEYPSMNLCSSSTGIRGTTGYIAPEYGLGCKMTTKGDTYSFGILLLEMLTGKKPTNRMFRGGLNLHNFVSLSLPDDVIKITDPLM-----KVMTSANKGDDK----RVEDCLTRMYSIGLACSKTSAKDRPDMRDVLYELESIRNIF 514
+R R PS P + L +SY L KAT+GFSS NL+G G FGSVYKG FD++ G +AIKV NLQR+GA KSF E + L +I H LV++IT+C+SVD G+DF+AI++++M GSLE WLHP I+ + LTL RISI ID+A ALDYLH C+ I+HCDLKP NIL+D ++ A I DFGL+ + S SSS G+RGT GY+APEYGLG +++T GD YS+GILLLEM+T KKPT+ MF GGLNLHNF ++LPD V+ I DP++ ++ + N G + +CL M IG+ACS S +DR ++ +V++E +S++NI
Sbjct: 275 SRPSRQPSEPMIRKALLKMSYKSLLKATDGFSSTNLIGVGSFGSVYKGVFDED---------------GTVVAIKVINLQRQGASKSFMAECKALKNIRHKNLVRVITSCSSVDFQGNDFKAIVYKYMPNGSLEKWLHPDAIPQRDREIEIQKLTLLQRISIAIDVASALDYLHQHCQEPILHCDLKPSNILLDNDLSAHIGDFGLS-RFYQAVSNPTVSSSIGVRGTIGYVAPEYGLGSEVSTNGDVYSYGILLLEMVTTKKPTDVMFEGGLNLHNFARMALPDHVMDIVDPILLNDDEVLVGTDNHGRSQTRTNSTLECLISMLRIGVACSMESPQDRMNITNVVHEFQSVKNIL 615
Query: 1 MLTGKKITDPMFDRSYKLQNFVSNALSDRVIDVIDPFNL-----------HELSRYDAAMAMDCLEMLLDIGVRCALESPQFRPDIKDTLSILETVRRVF 89
M+T KK TD MF+ L NF AL D V+D++DP L H S+ ++CL +L IGV C++ESPQ R +I + + ++V+ +
Sbjct: 516 MVTTKKPTDVMFEGGLNLHNFARMALPDHVMDIVDPILLNDDEVLVGTDNHGRSQTRTNSTLECLISMLRIGVACSMESPQDRMNITNVVHEFQSVKNIL 615
BLAST of XM_017366990.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR Match: A0A540NMQ1 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
Query: 185 VSYMDLHKATNGFSSANLVGAGGFGSVYKGTFDQEYVRLLLGDSGIEDEIGIAIAIKVFNLQRRGAVKSFNTEYQTLNDIDHTYLVKLITTCTSVDQDGHDFRAILFEFMDQGSLEMWLHPTYKSNHHGPIKPRILTLYARISIGIDIAYALDYLHNQCKNQIIHCDLKPGNILIDKNMFARIADFGLAITLPEYPS----MNLCSSSTGIRGTTGYIAPEYGLGCKMTTKGDTYSFGILLLEMLTGKKPTNRMFRGGLNLHNFVSLSLPDDVIKITD-PLMKVMTSAN----KGDDKRVEDCLTRMYSIGLACSKTSAKDR-PDMRDVLYELESIRNIF 514
VSY L KAT+GFS ANL+GAG FGSVYKG D ED+ +A+KVFNL R GA +SF E + L +I H LVK+IT C+SVD G+DF+A+++EF D GSLE WLHP + P+ L+L R+ I I +A ALDYLHN C+ I+HCDLKP N+L+D M + ++DFGLA L + S + +SS GIRGT GY APEYG+G +++T GD YSFGILLLEM T K+PT+ MF LNLHNFV +++P V +I D P ++ T+ N +VE CL+ ++ IG+ACS S +DR ++ D EL SIRN F
Sbjct: 30 VSYATLLKATDGFSEANLIGAGSFGSVYKGVLD-------------EDDKAQLVAVKVFNLLRHGASRSFIAECEALRNIRHRNLVKIITVCSSVDFHGNDFKALVYEFKDNGSLEEWLHPPTGTEVLRDYVPKKLSLLQRLEIAIGVACALDYLHNHCETPIVHCDLKPSNVLLDNEMTSHVSDFGLARFLSQVTSNVSAIQSQTSSVGIRGTVGYAAPEYGMGSEVSTNGDVYSFGILLLEMFTRKRPTDNMFGDSLNLHNFVKMAIPGRVTEIADAPFLQGGTNENPNQCSARIHKVEVCLSSIFRIGIACSADSVRDRLKNINDAASELHSIRNTF 356
BLAST of XM_017366990.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR Match: A0A5J5AYN8 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
Query: 185 VSYMDLHKATNGFSSANLVGAGGFGSVYKGTFDQEYVRLLLGDSGIEDEIGIAIAIKVFNLQRRGAVKSFNTEYQTLNDIDHTYLVKLITTCTSVDQDGHDFRAILFEFMDQGSLEMWLHPTYKSNHHGPIKPRILTLYARISIGIDIAYALDYLHNQCKNQIIHCDLKPGNILIDKNMFARIADFGLAITLPEY--PSMNLCSSSTGIRGTTGYIAPEYGLGCKMTTKGDTYSFGILLLEMLTGKKPTNRMFRGGLNLHNFVSLSLPDDVIKITDPLMKV---------------------MTSANKGDDKRVEDCLTRMYSIGLACSKTSAKDRPDMRDVLYELESIRNIF 514
VSY L KAT+GFS NL+G G FGSVYKG E + +A+KV NLQR GA KSF E + L +I H LVK+ITTC+S+D G+DF+A+++EFM GSLE WLH + +S++ G +P+ L L+ RI++ ID+A ALDYLHN C+ IIHCDLKP N+L+D +M A + DFGLA LPE PS SSS GIRGT GY APE G+G +++TKGD YS+GILLLEM+TGK+PT+ MF G LNLHNF S++ PD V++I DP++ + + +D R E+CL M IGLACS S DR D+ + ++EL +R+I
Sbjct: 503 VSYERLLKATDGFSLENLIGMGSFGSVYKGILQDEVI----------------VAVKVLNLQRGGASKSFMAECEALRNIRHRNLVKIITTCSSIDFQGNDFKALVYEFMPNGSLERWLHSSSESDN-GQDEPQTLNLHQRINVAIDVASALDYLHNHCEKTIIHCDLKPSNVLLDSDMVAHVGDFGLARYLPELSNPSQ---SSSLGIRGTIGYAAPECGMGSEVSTKGDVYSYGILLLEMMTGKRPTDNMFEGSLNLHNFASMAFPDRVMEILDPVLTINDEATAAAAAAAAAVAKSNNNRSPGQARNDNRKEECLISMVKIGLACSMESPLDRMDISNAIHELLLVRDIL 835
Query: 1 MLTGKKITDPMFDRSYKLQNFVSNALSDRVIDVIDPF-----------------------NLHELSRYDAAMAMDCLEMLLDIGVRCALESPQFRPDIKDTLSILETVRRVFEDNTGGTET 98
M+TGK+ TD MF+ S L NF S A DRV++++DP N + +CL ++ IG+ C++ESP R DI + + L VR + + GT T
Sbjct: 724 MMTGKRPTDNMFEGSLNLHNFASMAFPDRVMEILDPVLTINDEATAAAAAAAAAVAKSNNNRSPGQARNDNRKEECLISMVKIGLACSMESPLDRMDISNAIHELLLVRDILQ----GTRT 840
BLAST of XM_017366990.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR Match: A0A7N2MSV5 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
Query: 73 PDIKDTLSILETVRRVFEDNTGGTETYTTGSFQDAVLVAQINSRSL--PWNRLEVPEVPSRNLVERNSGGADRNVAATRQSMDPSPQMAPNSVTVSYTRQLRDPSPQ--MAPNLATVSYMDLHKATNGFSSANLVGAGGFGSVYKGTFDQEYVRLLLGDSGIEDEIGIAIAIKVFNLQRRGAVKSFNTEYQTLNDIDHTYLVKLITTCTSVDQDGHDFRAILFEFMDQGSLEMWLHPTYKSNHHGPIKPRILTLYARISIGIDIAYALDYLHNQCKNQIIHCDLKPGNILIDKNMFARIADFGLAITLPEYPSMNLCSSSTGIRGTTGYIAPEYGLGCKMTTKGDTYSFGILLLEMLTGKKPTNRMFRGGLNLHNFVSLSLPDDVIKITDPLMKVMTSANKGDDKRVEDCLTRMYSIGLACSKTSAKDRPDMRDVLYELESIRNIF 514
P+ + LS L+ + F D G E T G F ++ ++ I + L + L+ P ++ + A + VA + + P + + + Q +D S + + +L VSY L KAT+GFS ANL+G G FGSVYKG +LG EDE +A+KV N+QR+GA KSF +E + L +I H LVK+IT+C+SVD G+DF+A++FEFM GSLE WLH ++N + + L L RISI ID+AYALDYLH++C I+HCDLKP NIL D +M A I DFGLA L E + S S GIRGT GY PEYG+GC ++TKGD YS+GILLLEM+TGK+PTN +F GGLNLHN+ S++LP+ VI+I+DP K++ N GD R E+CL M IG++CS ++R D+ L EL +R+I
Sbjct: 340 PNFLEKLS-LKNLNLSFNDFEG--EVPTKGVFSNSSAISLIGNSRLCGGISELKFPRCLTKEEKKARWPLAVK-VAISMACVIPVVTIMSFFLFCRHKNQRKDNSSESSLRQSLLKVSYQGLLKATDGFSPANLIGVGSFGSVYKG---------ILG----EDES--IVAVKVINIQRQGASKSFISECEALKNIRHRNLVKIITSCSSVDFHGNDFKALVFEFMPNGSLENWLHMDLETNTR-QVDIQNLNLVQRISIAIDVAYALDYLHHRCPMPIVHCDLKPSNILFDCDMIAHIGDFGLAKFLLELTNPKQ-SDSIGIRGTIGYTPPEYGVGCDVSTKGDVYSYGILLLEMITGKRPTNCVFEGGLNLHNYASMALPNRVIEISDP--KLLN--NCGDTNRTEECLISMVKIGVSCSMELPQERWDIIKALSELYLVRDIL 760
Query: 1 MLTGKKITDPMFDRSYKLQNFVSNALSDRVIDVIDPFNLHELSRYDAAMAMDCLEMLLDIGVRCALESPQFRPDIKDTLSILETVRRVFE 90
M+TGK+ T+ +F+ L N+ S AL +RVI++ DP L+ D +CL ++ IGV C++E PQ R DI LS L VR +
Sbjct: 674 MITGKRPTNCVFEGGLNLHNYASMALPNRVIEISDPKLLNNCG--DTNRTEECLISMVKIGVSCSMELPQERWDIIKALSELYLVRDILH 761
BLAST of XM_017366990.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR Match: A0A5E4EB16 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
Query: 185 VSYMDLHKATNGFSSANLVGAGGFGSVYKGTFDQEYVRLLLGDSGIEDEIGIAIAIKVFNLQRRGAVKSFNTEYQTLNDIDHTYLVKLITTCTSVDQDGHDFRAILFEFMDQGSLEMWLHPTYKSNHHGPIKPRILTLYARISIGIDIAYALDYLHNQCKNQIIHCDLKPGNILIDKNMFARIADFGLA---ITLPEYPSMNLCSSSTGIRGTTGYIAPEYGLGCKMTTKGDTYSFGILLLEMLTGKKPTNRMFRGGLNLHNFVSLSLPDDVIKITDPLMK--VMTSANKGDDK--RVEDCLTRMYSIGLACSKTSAKDRPDMRDVLYELESIRNIF 514
VSY L KATNGFSSANL+G G FGSVYKG D + +L +AIKVFN+ GA KSF E + L +I H LVK+IT C++VD G+DF+A+++E MD GSLE WLH T ++ P+ L L R++I IDIA ALDYLHN C+ I+HCDLKP N+L+D + ++DFGLA L + S N +SS GI+G+ GY APEYG+G +++ GD YSFGILLLEM TG++PT+ MF GLNLHNFV + PD V +I D L++ + S + K RVE+CL+ ++ +G+ACS S +R DM DV EL SIR++
Sbjct: 137 VSYSTLLKATNGFSSANLIGVGSFGSVYKGVLDFDGAQL--------------VAIKVFNMLHHGASKSFLAECEALRNIRHRNLVKIITACSTVDYQGNDFKALVYELMDNGSLEEWLHSTIETKEE-TYAPKNLNLLQRLNITIDIACALDYLHNDCETPIVHCDLKPSNVLLDAELTGHVSDFGLARFLAKLADKASANQ-ASSIGIKGSVGYAAPEYGMGSEVSKSGDVYSFGILLLEMFTGRRPTDHMFSDGLNLHNFVKTAFPDRVKEIADLLLQEGSIESPEQYSTKARRVEECLSLIFKLGIACSVESPANRKDMSDVASELHSIRDML 457
Query: 1 MLTGKKITDPMFDRSYKLQNFVSNALSDRVIDVIDPF----NLHELSRYD--AAMAMDCLEMLLDIGVRCALESPQFRPDIKDTLSILETVR 86
M TG++ TD MF L NFV A DRV ++ D ++ +Y A +CL ++ +G+ C++ESP R D+ D S L ++R
Sbjct: 363 MFTGRRPTDHMFSDGLNLHNFVKTAFPDRVKEIADLLLQEGSIESPEQYSTKARRVEECLSLIFKLGIACSVESPANRKDMSDVASELHSIR 454
BLAST of XM_017366990.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR Match: A0A5B7BF39 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011} (Fragment))
Query: 1 MLTGKKITDPMFDRSYKLQNFVSNALSDRVIDVIDPF-------------------------NLHELSRYDAAMAMDCLEMLLDIGVRCALESPQFRPDIKDTLSILETVRRVFEDNTGGT 96
M+TGK+ TD MF+ L F S AL DRV++++DP N + +CL ++ IGV C++ESP R DI + + L VR V + G+
Sbjct: 804 MMTGKRPTDNMFEGGLNLHKFASMALPDRVMEILDPILLNNDEAAAVAAAEAEAEAEAEANNNRSPGQARNGNRKEECLISMVKIGVACSVESPPDRMDISNAIQELHLVREVLQGTRTGS 924
BLAST of XM_017366990.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR Match: A0A4S4D901 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
Query: 169 RQLRDPSPQMAPNLATVSYMDLHKATNGFSSANLVGAGGFGSVYKGTF--DQEYVRLLLGDSGIEDEIGIAIAIKVFNLQRRGAVKSFNTEYQTLNDIDHTYLVKLITTCTSVDQDGHDFRAILFEFMDQGSLEMWLHPTYKSNHHGPIKPRILTLYARISIGIDIAYALDYLHNQCKNQIIHCDLKPGNILIDKNMFARIADFGLAITLPEYPSMNLCSSSTGIRGTTGYIAPEYGLGCKMTTKGDTYSFGILLLEMLTGKKPTNRMFRGGLNLHNFVSLSLPDDVIKITDPLM-------KVMTSANKGDDKRVEDCLTRMYSIGLACSKTSAKDRPDMRDVLYELESIRN 512
R + P + + VSY L KAT+GFSSANL+G G FGSVY+G D+E+V AIKV NLQ RGA+KSF E +TL +I H LV++IT+C+SVD G++F+A+++EFM GSLE WLH + ++N G + + L L RI+I ID+A ALDYLH+QC+ IIHCDLKP NIL+D+ M A I DFGLA PE + N SSS G+RGT GY+APEYGLG +M+T GD YS+GILLLEM+TGK+PT MF G NLHNF ++LPD V++I DP++ T+ + ++ +CL M +IG+ACS S + R + ++L+EL ++N
Sbjct: 693 RTAQSTVPVLKESFLKVSYEKLLKATDGFSSANLIGFGSFGSVYRGILVQDREFVA----------------AIKVLNLQNRGAIKSFMAECETLRNIRHRNLVRIITSCSSVDFQGNEFKALVYEFMPNGSLERWLHASLETND-GQNEQQRLNLLQRINIAIDVACALDYLHHQCQKPIIHCDLKPSNILLDREMVAHIGDFGLARFFPELTNPNQ-SSSIGVRGTIGYVAPEYGLGSEMSTYGDVYSYGILLLEMITGKRPTENMFEEGHNLHNFARMALPDRVMEIADPVLLDNEEEEARATTIQVNNGSKIVECLISMVNIGVACSTESPQGRMSISNILHELHLVKN 1027
Query: 1 MLTGKKITDPMFDRSYKLQNFVSNALSDRVIDVIDPF---NLHELSRY------DAAMAMDCLEMLLDIGVRCALESPQFRPDIKDTLSILETVR 86
M+TGK+ T+ MF+ + L NF AL DRV+++ DP N E +R + + ++CL +++IGV C+ ESPQ R I + L L V+
Sbjct: 932 MITGKRPTENMFEEGHNLHNFARMALPDRVMEIADPVLLDNEEEEARATTIQVNNGSKIVECLISMVNIGVACSTESPQGRMSISNILHELHLVK 1026
BLAST of XM_017366990.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR Match: A0A540N535 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
Query: 185 VSYMDLHKATNGFSSANLVGAGGFGSVYKGTFDQEYVRLLLGDSGIEDEIGIAIAIKVFNLQRRGAVKSFNTEYQTLNDIDHTYLVKLITTCTSVDQDGHDFRAILFEFMDQGSLEMWLHPTYKSNHHGPIKPRILTLYARISIGIDIAYALDYLHNQCKNQIIHCDLKPGNILIDKNMFARIADFGLAITLPEYPS----MNLCSSSTGIRGTTGYIAPEYGLGCKMTTKGDTYSFGILLLEMLTGKKPTNRMFRGGLNLHNFVSLSLPDDVIKITD-PLMKVMTSAN----KGDDKRVEDCLTRMYSIGLACSKTSAKDR-PDMRDVLYELESIRNIF 514
VSY L KAT+GFS ANL+GAG FGSVYKG FD ED+ +A+KVFNL R GA +SF E + L +I H L+K+IT C+SVD G+DF+A+++EFMD GSLE WLHP + P+ L+L R+ I I +A ALDYLHN C+ I+HCDLKP N+L+D + ++DFGLA L + S + +SS GIRGT GY APEYG+G +++T GD YSFGILLLEM TGK+PT+ MF LNLHNFV ++LP V +I D PL++ TS N VE CL+ ++ IG+ACS S R +++D EL SIRN F
Sbjct: 282 VSYATLLKATDGFSKANLIGAGSFGSVYKGVFD-------------EDDKAQLVAVKVFNLLRHGASRSFIAECEALRNIRHRNLIKIITVCSSVDFHGNDFKALVYEFMDNGSLEEWLHPPTGTEELRDHVPKKLSLLQRLEIAIGVACALDYLHNHCETPIVHCDLKPSNVLLDNELTGHVSDFGLARFLSQVTSNVSAIQNQTSSVGIRGTVGYAAPEYGMGSEVSTNGDVYSFGILLLEMFTGKRPTDIMFGDSLNLHNFVKMALPGQVTEIADAPLLQGGTSKNLNQCSARIHEVEVCLSSIFRIGIACSVESTTKRLKNIKDAASELHSIRNAF 608
Query: 1 MLTGKKITDPMFDRSYKLQNFVSNALSDRVIDVID-PF-------NLHELSRYDAAMAMDCLEMLLDIGVRCALESPQFR-PDIKDTLSILETVRRVF 89
M TGK+ TD MF S L NFV AL +V ++ D P NL++ S + + CL + IG+ C++ES R +IKD S L ++R F
Sbjct: 512 MFTGKRPTDIMFGDSLNLHNFVKMALPGQVTEIADAPLLQGGTSKNLNQCSARIHEVEV-CLSSIFRIGIACSVESTTKRLKNIKDAASELHSIRNAF 608
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.
There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.
LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.
Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.
RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.
The NCBI Sequence report lists the correspondences between the various naming methods
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.
