XM_017367979.1

Resource Type: 
Polypeptide
Name: 
XM_017367979.1
Identifier: 
XM_017367979.1-protein
Sequence: 
MDGEDGKQQAHLVLADKLFLLTLPDVDDIEKVRLRQQVLDAVVADDMATL
YETLVSTGVLELDQALLDSMRDKNVQELKKIDDKISDAEENLGESEVREA
HLAKSLFYIRIGDKVKALEQLKVTEGKTVAVGQRMDLVFYTLQIGLFYMD
FDLISKSIDKAKKLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAADLFLD
SISTFTTYELFPYDTFICYTVLASIITLDRVSLKQKVVDAPEILTVIGKI
PHLSEFLNSLYGCQYKSFFSAFAGLTKDIKLDRYLHPHFRYYMREIRTVV
YSQFLESYKSVTIEAMAKAFGVTVDFIDLELSRFISAGKLHCKIDKVAGV
LETNRPDSKNALYQSTIKQGDFLLNRIQKLSRVIDL
Sequence Length: 
386
Sequence Checksum: 
cd1be36c0c6f1bbfb47b474c1c3123ff
View location in JBrowse: 
DCARv2_Chr8:22382088..22385504-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017367979.1, derives from mRNA, XM_017367979.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017367979.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017367979.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2J6KTX6 (PCI domain-containing protein {ECO:0000259|PROSITE:PS50250})

HSP 1 Score: 702.59 bits (1812), Expect = 0.000e+0
Identity = 342/386 (88.60%), Postives = 364/386 (94.30%), Query Frame = 0
 
Query:    1 MDGEDGKQQAHLVLADKLFLLTLPDVDDIEKVRLRQQVLDAVVADDMATLYETLVSTGVLELDQALLDSMRDKNVQELKKIDDKISDAEENLGESEVREAHLAKSLFYIRIGDKVKALEQLKVTEGKTVAVGQRMDLVFYTLQIGLFYMDFDLISKSIDKAKKLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAADLFLDSISTFTTYELFPYDTFICYTVLASIITLDRVSLKQKVVDAPEILTVIGKIPHLSEFLNSLYGCQYKSFFSAFAGLTKDIKLDRYLHPHFRYYMREIRTVVYSQFLESYKSVTIEAMAKAFGVTVDFIDLELSRFISAGKLHCKIDKVAGVLETNRPDSKNALYQSTIKQGDFLLNRIQKLSRVIDL 386
            M+G +G QQ HLVLA+KLFLLT  DVDDIEKVRLR +V+  VVADDMA LYETL ++ VLELDQ +LDSMR K  +ELKK+D+KI+DAEENLGESEVREAHLAKSLFYIRIGDK KALEQLKVTEGKTVAVGQRMDLVFYTLQ+G FYMDFDLIS+SIDKAK LFEEGGDWERKNRLKVYEGLYCMSTRNFKKAADLFLDSISTFTTYELFPYDTFI YTVLASII+LDRVSLKQKVVDAPEILTVIGKIP LSEF+NSLY CQYKSFFSAFAG+T+ IKLDRYLHPHFR+YMREIRTVVYSQFLESYKSVTIEAMAKAFGVTVDFIDLELSRFI+AGKLHCKIDKVAGVLETNRPD+KNALYQ+TIKQGDFLLNRIQKLSRVIDL
Sbjct:    1 MEGTEGTQQPHLVLANKLFLLTHSDVDDIEKVRLRDEVMSTVVADDMAPLYETLAASSVLELDQKVLDSMRAKIAEELKKLDEKIADAEENLGESEVREAHLAKSLFYIRIGDKEKALEQLKVTEGKTVAVGQRMDLVFYTLQMGFFYMDFDLISRSIDKAKNLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAADLFLDSISTFTTYELFPYDTFIFYTVLASIISLDRVSLKQKVVDAPEILTVIGKIPFLSEFMNSLYECQYKSFFSAFAGITEHIKLDRYLHPHFRFYMREIRTVVYSQFLESYKSVTIEAMAKAFGVTVDFIDLELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL 386
[Close]
BLAST of XM_017367979.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6S7MW66 (PCI domain-containing protein {ECO:0000259|PROSITE:PS50250})

HSP 1 Score: 702.59 bits (1812), Expect = 0.000e+0
Identity = 342/386 (88.60%), Postives = 364/386 (94.30%), Query Frame = 0
 
Query:    1 MDGEDGKQQAHLVLADKLFLLTLPDVDDIEKVRLRQQVLDAVVADDMATLYETLVSTGVLELDQALLDSMRDKNVQELKKIDDKISDAEENLGESEVREAHLAKSLFYIRIGDKVKALEQLKVTEGKTVAVGQRMDLVFYTLQIGLFYMDFDLISKSIDKAKKLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAADLFLDSISTFTTYELFPYDTFICYTVLASIITLDRVSLKQKVVDAPEILTVIGKIPHLSEFLNSLYGCQYKSFFSAFAGLTKDIKLDRYLHPHFRYYMREIRTVVYSQFLESYKSVTIEAMAKAFGVTVDFIDLELSRFISAGKLHCKIDKVAGVLETNRPDSKNALYQSTIKQGDFLLNRIQKLSRVIDL 386
            M+G +G QQ HLVLA+KLFLLT  DVDDIEKVRLR +V+  VVADDMA LYETL ++ VLELDQ +LDSMR K  +ELKK+D+KI+DAEENLGESEVREAHLAKSLFYIRIGDK KALEQLKVTEGKTVAVGQRMDLVFYTLQ+G FYMDFDLIS+SIDKAK LFEEGGDWERKNRLKVYEGLYCMSTRNFKKAADLFLDSISTFTTYELFPYDTFI YTVLASII+LDRVSLKQKVVDAPEILTVIGKIP LSEF+NSLY CQYKSFFSAFAG+T+ IKLDRYLHPHFR+YMREIRTVVYSQFLESYKSVTIEAMAKAFGVTVDFIDLELSRFI+AGKLHCKIDKVAGVLETNRPD+KNALYQ+TIKQGDFLLNRIQKLSRVIDL
Sbjct:    1 MEGTEGTQQPHLVLANKLFLLTHSDVDDIEKVRLRDEVMSTVVADDMAPLYETLAASSVLELDQKVLDSMRAKIAEELKKLDEKIADAEENLGESEVREAHLAKSLFYIRIGDKEKALEQLKVTEGKTVAVGQRMDLVFYTLQMGFFYMDFDLISRSIDKAKNLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAADLFLDSISTFTTYELFPYDTFIFYTVLASIISLDRVSLKQKVVDAPEILTVIGKIPFLSEFMNSLYECQYKSFFSAFAGITEHIKLDRYLHPHFRFYMREIRTVVYSQFLESYKSVTIEAMAKAFGVTVDFIDLELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL 386
[Close]
BLAST of XM_017367979.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251RUY6 ((Putative 26S proteasome non-ATPase regulatory subunit 6 {ECO:0000313|EMBL:OTF90285.1}))

HSP 1 Score: 696.812 bits (1797), Expect = 0.000e+0
Identity = 339/386 (87.82%), Postives = 362/386 (93.78%), Query Frame = 0
 
Query:    1 MDGEDGKQQAHLVLADKLFLLTLPDVDDIEKVRLRQQVLDAVVADDMATLYETLVSTGVLELDQALLDSMRDKNVQELKKIDDKISDAEENLGESEVREAHLAKSLFYIRIGDKVKALEQLKVTEGKTVAVGQRMDLVFYTLQIGLFYMDFDLISKSIDKAKKLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAADLFLDSISTFTTYELFPYDTFICYTVLASIITLDRVSLKQKVVDAPEILTVIGKIPHLSEFLNSLYGCQYKSFFSAFAGLTKDIKLDRYLHPHFRYYMREIRTVVYSQFLESYKSVTIEAMAKAFGVTVDFIDLELSRFISAGKLHCKIDKVAGVLETNRPDSKNALYQSTIKQGDFLLNRIQKLSRVIDL 386
            M+G +G QQ HLVLA+KLFLLT  DVDDIEKVRLR  V+  VVADDMA LYETL ++ VL LDQ +LDSMR K  +E+KK+D+KI+DAEENLGESEVREAHLAKSLFYIRIGDK KALEQLKVTEGKTVAVGQRMDLVFYTLQ+G FYMDFDLISKSIDKAK LFEEGGDWERKNRLKVYEGLYC+STRNFKKAADLFLDSISTFTTYE+FPYDTFI YTVLASII+LDRVSLKQKVVDAPEILTVI KIP+LSEFLNSLY CQYKSFFSAFAG+TK IKLDRYLHPHFRYYMRE+RTVVYSQFLESYKS+TIEAMAKAFGVTVDFIDLELSRFI+AGKLHCKIDKVAGVLETNRPD+KNALYQ+TIKQGDFLLNRIQKLSRVIDL
Sbjct:    1 MEGTEGTQQPHLVLANKLFLLTQSDVDDIEKVRLRDDVMSTVVADDMAPLYETLAASSVLALDQKVLDSMRAKIEEEVKKLDEKIADAEENLGESEVREAHLAKSLFYIRIGDKEKALEQLKVTEGKTVAVGQRMDLVFYTLQMGFFYMDFDLISKSIDKAKNLFEEGGDWERKNRLKVYEGLYCLSTRNFKKAADLFLDSISTFTTYEIFPYDTFIFYTVLASIISLDRVSLKQKVVDAPEILTVIAKIPYLSEFLNSLYECQYKSFFSAFAGITKHIKLDRYLHPHFRYYMREVRTVVYSQFLESYKSITIEAMAKAFGVTVDFIDLELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL 386
[Close]
BLAST of XM_017367979.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251U139 ((Putative 26S proteasome, regulatory subunit Rpn7,Proteasome component (PCI) domain protein {ECO:0000313|EMBL:OTG16576.1}))

HSP 1 Score: 693.73 bits (1789), Expect = 0.000e+0
Identity = 335/386 (86.79%), Postives = 362/386 (93.78%), Query Frame = 0
 
Query:    1 MDGEDGKQQAHLVLADKLFLLTLPDVDDIEKVRLRQQVLDAVVADDMATLYETLVSTGVLELDQALLDSMRDKNVQELKKIDDKISDAEENLGESEVREAHLAKSLFYIRIGDKVKALEQLKVTEGKTVAVGQRMDLVFYTLQIGLFYMDFDLISKSIDKAKKLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAADLFLDSISTFTTYELFPYDTFICYTVLASIITLDRVSLKQKVVDAPEILTVIGKIPHLSEFLNSLYGCQYKSFFSAFAGLTKDIKLDRYLHPHFRYYMREIRTVVYSQFLESYKSVTIEAMAKAFGVTVDFIDLELSRFISAGKLHCKIDKVAGVLETNRPDSKNALYQSTIKQGDFLLNRIQKLSRVIDL 386
            M+G +G QQ HLVLA+KLFLLT  DVDDI+KVRLR++V+  V+ADDMA LYETL +  VLELDQ +LDSMR K  +ELKK+D+KI+DAEENLGESEVREAHLAKSLFYIRI DK KALEQLK+TEGKTVAVGQRMDLVFYTLQ+  FYMDFDL+S+SIDKAK LFEEGGDWERKNRLKVYEGLYCMSTRNFKKAADLFLDSISTFTTYE+FPYDTFI YTVLASII+LDRVSLKQKVVDAPEILTVI KIP+LSEFLNSLY CQYKSFFSAFAG+T+ IKLDRYLHPHFR+YMREIRTVVYSQFLESYKSVTIEAMAKAFGVTVDFIDLELSRFI+AGKLHCKIDKVAGVLETNRPD+KNALYQ+TIKQGDFLLNRIQKLSRVIDL
Sbjct:    1 MEGTEGTQQPHLVLANKLFLLTHSDVDDIQKVRLREEVISTVLADDMAPLYETLAANSVLELDQKVLDSMRVKIAEELKKLDEKIADAEENLGESEVREAHLAKSLFYIRIADKEKALEQLKITEGKTVAVGQRMDLVFYTLQMAFFYMDFDLVSRSIDKAKNLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAADLFLDSISTFTTYEIFPYDTFIFYTVLASIISLDRVSLKQKVVDAPEILTVISKIPYLSEFLNSLYECQYKSFFSAFAGITEHIKLDRYLHPHFRFYMREIRTVVYSQFLESYKSVTIEAMAKAFGVTVDFIDLELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL 386
[Close]
BLAST of XM_017367979.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6LZF7 (PCI domain-containing protein {ECO:0000259|PROSITE:PS50250})

HSP 1 Score: 692.575 bits (1786), Expect = 0.000e+0
Identity = 336/382 (87.96%), Postives = 361/382 (94.50%), Query Frame = 0
 
Query:    5 DGKQQAHLVLADKLFLLTLPDVDDIEKVRLRQQVLDAVVADDMATLYETLVSTGVLELDQALLDSMRDKNVQELKKIDDKISDAEENLGESEVREAHLAKSLFYIRIGDKVKALEQLKVTEGKTVAVGQRMDLVFYTLQIGLFYMDFDLISKSIDKAKKLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAADLFLDSISTFTTYELFPYDTFICYTVLASIITLDRVSLKQKVVDAPEILTVIGKIPHLSEFLNSLYGCQYKSFFSAFAGLTKDIKLDRYLHPHFRYYMREIRTVVYSQFLESYKSVTIEAMAKAFGVTVDFIDLELSRFISAGKLHCKIDKVAGVLETNRPDSKNALYQSTIKQGDFLLNRIQKLSRVIDL 386
            +GKQQ HLVLA+KLFL+T  DVDDIEKVRLR +V   VVADDMA LYETL +T VL+LDQ +L+SMR    +ELKKID+KI+DAEENLGESEVREAHLAKSLFYIRIGDK KALEQLKVTEGKTVAVGQRMDLVFYTLQ+G FYMDFDLIS+SIDKAK LFEEGGDWERKNRLKVYEGLYCMSTRNFKKAA+LFLDSISTFTTYE+FPYDTFI YTVLASII+LDRVSLKQKVVDAPEILTVIGKIP+LSEFLNSLY CQYKSFFSAFAG+++ IKLDRYLHPHFRYYMREIR+VVYSQFLESYKS+TIEAMAKAFGVTVDFIDLELSRFI+AGKLHCKIDKVAGVLETNRPD+KNALYQ+TIKQGDFLLNRIQKLSRVIDL
Sbjct:    4 EGKQQPHLVLANKLFLITQSDVDDIEKVRLRDEVTSTVVADDMAPLYETLAATAVLDLDQKVLESMRANIEEELKKIDEKIADAEENLGESEVREAHLAKSLFYIRIGDKEKALEQLKVTEGKTVAVGQRMDLVFYTLQMGFFYMDFDLISRSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAAELFLDSISTFTTYEIFPYDTFIFYTVLASIISLDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYDCQYKSFFSAFAGISEHIKLDRYLHPHFRYYMREIRSVVYSQFLESYKSITIEAMAKAFGVTVDFIDLELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL 385
[Close]
BLAST of XM_017367979.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A1D5 (PCI domain-containing protein {ECO:0000259|PROSITE:PS50250})

HSP 1 Score: 691.804 bits (1784), Expect = 0.000e+0
Identity = 335/386 (86.79%), Postives = 364/386 (94.30%), Query Frame = 0
 
Query:    1 MDGEDGKQQAHLVLADKLFLLTLPDVDDIEKVRLRQQVLDAVVADDMATLYETLVSTGVLELDQALLDSMRDKNVQELKKIDDKISDAEENLGESEVREAHLAKSLFYIRIGDKVKALEQLKVTEGKTVAVGQRMDLVFYTLQIGLFYMDFDLISKSIDKAKKLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAADLFLDSISTFTTYELFPYDTFICYTVLASIITLDRVSLKQKVVDAPEILTVIGKIPHLSEFLNSLYGCQYKSFFSAFAGLTKDIKLDRYLHPHFRYYMREIRTVVYSQFLESYKSVTIEAMAKAFGVTVDFIDLELSRFISAGKLHCKIDKVAGVLETNRPDSKNALYQSTIKQGDFLLNRIQKLSRVIDL 386
            M+G++G QQ HLVLA+KLFLLT PDV DIEKVRLR++V  +V ADDMA LYETL +  VL++DQ++LDSMR K  +ELKK+D+KI+DAEENLGESEVREAHLAKSLFYIRIGDK KALEQLK+TE KTVAVGQ+MDLVF+TL +G FY+DFDLISKSIDKAK LFEEGGDWERKNRLKVYEGLYCMSTRNFKKAADLFLDSISTFTTYELFPYDTFI YTVLASII+LDRVSLKQKVVDAPEILTVIGKIP+LSEFLNSLY CQYKSFF+AFAGLT+ IKLDRYLHPHFRYYMRE+RTVVYSQFLESYKSVTIEAMAKAFGVTVDFIDLELSRFI+AGKLHCKIDKVAGVLETNRPD+KNALYQ+TIKQGDFLLNRIQKLSRVIDL
Sbjct:    1 MEGQEGTQQPHLVLANKLFLLTHPDVQDIEKVRLREEVFASVKADDMAPLYETLAANSVLDMDQSVLDSMRAKIDEELKKLDEKIADAEENLGESEVREAHLAKSLFYIRIGDKEKALEQLKITESKTVAVGQKMDLVFHTLLLGFFYLDFDLISKSIDKAKNLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAADLFLDSISTFTTYELFPYDTFIFYTVLASIISLDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYDCQYKSFFTAFAGLTEHIKLDRYLHPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVDFIDLELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL 386
[Close]
BLAST of XM_017367979.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A837AUK1 ((26S proteasome non-ATPase regulatory {ECO:0000313|EMBL:KAG5230279.1}))

HSP 1 Score: 691.034 bits (1782), Expect = 0.000e+0
Identity = 336/386 (87.05%), Postives = 360/386 (93.26%), Query Frame = 0
 
Query:    1 MDGEDGKQQAHLVLADKLFLLTLPDVDDIEKVRLRQQVLDAVVADDMATLYETLVSTGVLELDQALLDSMRDKNVQELKKIDDKISDAEENLGESEVREAHLAKSLFYIRIGDKVKALEQLKVTEGKTVAVGQRMDLVFYTLQIGLFYMDFDLISKSIDKAKKLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAADLFLDSISTFTTYELFPYDTFICYTVLASIITLDRVSLKQKVVDAPEILTVIGKIPHLSEFLNSLYGCQYKSFFSAFAGLTKDIKLDRYLHPHFRYYMREIRTVVYSQFLESYKSVTIEAMAKAFGVTVDFIDLELSRFISAGKLHCKIDKVAGVLETNRPDSKNALYQSTIKQGDFLLNRIQKLSRVIDL 386
            M+ ++G QQ HLVLA+KLFLLT PDV DIEKVRL++ VL  + +DDM  LYETLV+  +LE DQ+LLDSMR KN  ELKK+D+KI+DAEENLGESEVREAHLAKSLFYIRIGDK KALEQLKVTEGKTVAVGQRMDLVFYTLQ+  FYMDFDLISKSIDKAK LFEEGGDWERKNRLKVYEGLYCMS+RNFKKAADLFLDSISTFTTYELFPYDTFI YTVL SII+LDRVSLK+KVVDAPEILTVIGKI +LSEFLNSLY CQYKSFFSAFAGLT+ IKLDRYLHPHFRYYMRE+RTVVYSQFLESYKSVTIEAMAKAFGVTVDFID+ELSRFISAGKLHCKIDKVAGVLETNRPD+KNALYQ+TIKQGDFLLNRIQKLSRVIDL
Sbjct:    1 MENQEGTQQPHLVLANKLFLLTHPDVQDIEKVRLKEDVLTTIKSDDMVPLYETLVAESLLEKDQSLLDSMRSKNEDELKKLDEKIADAEENLGESEVREAHLAKSLFYIRIGDKEKALEQLKVTEGKTVAVGQRMDLVFYTLQLAFFYMDFDLISKSIDKAKNLFEEGGDWERKNRLKVYEGLYCMSSRNFKKAADLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKKKVVDAPEILTVIGKIQYLSEFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVDFIDMELSRFISAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL 386
[Close]
BLAST of XM_017367979.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A837A3L3 ((26S proteasome non-ATPase regulatory {ECO:0000313|EMBL:KAG5234226.1}))

HSP 1 Score: 691.034 bits (1782), Expect = 0.000e+0
Identity = 336/386 (87.05%), Postives = 360/386 (93.26%), Query Frame = 0
 
Query:    1 MDGEDGKQQAHLVLADKLFLLTLPDVDDIEKVRLRQQVLDAVVADDMATLYETLVSTGVLELDQALLDSMRDKNVQELKKIDDKISDAEENLGESEVREAHLAKSLFYIRIGDKVKALEQLKVTEGKTVAVGQRMDLVFYTLQIGLFYMDFDLISKSIDKAKKLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAADLFLDSISTFTTYELFPYDTFICYTVLASIITLDRVSLKQKVVDAPEILTVIGKIPHLSEFLNSLYGCQYKSFFSAFAGLTKDIKLDRYLHPHFRYYMREIRTVVYSQFLESYKSVTIEAMAKAFGVTVDFIDLELSRFISAGKLHCKIDKVAGVLETNRPDSKNALYQSTIKQGDFLLNRIQKLSRVIDL 386
            M+ ++G QQ HLVLA+KLFLLT  DV DIEKV L+++VL A+  DDM  LYETL++  +LE DQ+LLDSMR KN  ELKK+D+KI+DAEENLGESEVREAHLAKSLFYIRIGDK KALEQLKVTEGKTVAVGQRMDLVFYTLQ+G FYMDFDLISKSIDKA  LFEEGGDWERKNRLKVYEGLYCMSTRNFKKAADLFLDSISTFTTYELFPYDTFI YTVL SII+LDRVSLKQKVVDAPEILTVIGKIPHLSEFLNSLY CQYKSFFSAFAGLT+ IKLDRYLHPHFRYYMRE+RTVVYSQFLESYKSVTIEAMAKAFGVT++FIDLELSRFI+AGKLHCKIDKVAGVLETNRPD+KNALYQ+TIKQGDFLLNRIQKLSRVIDL
Sbjct:    1 MENQEGTQQPHLVLANKLFLLTHHDVQDIEKVHLKEEVLTAIKTDDMVPLYETLMAESLLEKDQSLLDSMRAKNEDELKKLDEKIADAEENLGESEVREAHLAKSLFYIRIGDKDKALEQLKVTEGKTVAVGQRMDLVFYTLQLGFFYMDFDLISKSIDKANNLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAADLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIPHLSEFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTLEFIDLELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL 386
[Close]
BLAST of XM_017367979.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5C7H3L9 (PCI domain-containing protein {ECO:0000259|PROSITE:PS50250})

HSP 1 Score: 690.649 bits (1781), Expect = 0.000e+0
Identity = 335/386 (86.79%), Postives = 361/386 (93.52%), Query Frame = 0
 
Query:    1 MDGEDGKQQAHLVLADKLFLLTLPDVDDIEKVRLRQQVLDAVVADDMATLYETLVSTGVLELDQALLDSMRDKNVQELKKIDDKISDAEENLGESEVREAHLAKSLFYIRIGDKVKALEQLKVTEGKTVAVGQRMDLVFYTLQIGLFYMDFDLISKSIDKAKKLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAADLFLDSISTFTTYELFPYDTFICYTVLASIITLDRVSLKQKVVDAPEILTVIGKIPHLSEFLNSLYGCQYKSFFSAFAGLTKDIKLDRYLHPHFRYYMREIRTVVYSQFLESYKSVTIEAMAKAFGVTVDFIDLELSRFISAGKLHCKIDKVAGVLETNRPDSKNALYQSTIKQGDFLLNRIQKLSRVIDL 386
            M+G++G QQ HLVLA+K FLLT PDV DIEKVRL+++V   V ADDMA  YETLV+  VLE+DQ++LDSMR K  +ELKK+D+KI+DAEENLGESEVREAHLAKSLFYI+IGDK KALEQLKVTE KTVAVGQ+MDLVFYTLQ+G FYMDFDLISKSIDKAK LFEEGGDWERKNRLKVYEGLYCMSTRNFK AADLFLDSISTFTTYELFPYDTFI YTVL SII+LDRVSLKQKVVDAPEILTVIGKIP+LSEFLNSLY CQYKSFFSAFAGLT+ IKLDRYLHPHFRYYMRE+RTVVYSQFLESYKSVTIEAMAKAFGVTV+FIDLELSRFI+AGKLHCKIDKVAGVLETNRPD+KNALYQ+TIKQGDFLLNRIQKLSRVIDL
Sbjct:    1 MEGQEGTQQVHLVLANKRFLLTHPDVQDIEKVRLKEEVFSMVKADDMAPFYETLVAESVLEMDQSVLDSMRAKIEEELKKLDEKIADAEENLGESEVREAHLAKSLFYIQIGDKDKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKMAADLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDLELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL 386
[Close]
BLAST of XM_017367979.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A1V1 (PCI domain-containing protein {ECO:0000259|PROSITE:PS50250})

HSP 1 Score: 689.493 bits (1778), Expect = 0.000e+0
Identity = 336/386 (87.05%), Postives = 362/386 (93.78%), Query Frame = 0
 
Query:    1 MDGEDGKQQAHLVLADKLFLLTLPDVDDIEKVRLRQQVLDAVVADDMATLYETLVSTGVLELDQALLDSMRDKNVQELKKIDDKISDAEENLGESEVREAHLAKSLFYIRIGDKVKALEQLKVTEGKTVAVGQRMDLVFYTLQIGLFYMDFDLISKSIDKAKKLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAADLFLDSISTFTTYELFPYDTFICYTVLASIITLDRVSLKQKVVDAPEILTVIGKIPHLSEFLNSLYGCQYKSFFSAFAGLTKDIKLDRYLHPHFRYYMREIRTVVYSQFLESYKSVTIEAMAKAFGVTVDFIDLELSRFISAGKLHCKIDKVAGVLETNRPDSKNALYQSTIKQGDFLLNRIQKLSRVIDL 386
            M+G++G Q+  LVLA  LFLLT PDV DIEK+RLR++V  +V ADDMA LYETL +  V++LDQ++LDSMR K   ELKK+D+KI+DAEENLGESEVREAHLAKSLFYIRIGDK KALEQLKVTE KTVAVGQ+MDLVFYTLQ+GLFYMDFDLISKSIDKAK LFEEGGDWERKNRLKVYEGLYCMSTRNFKKAADLFLDSISTFTTYELFPYDTFI YTVLASII+LDRVSLKQKVVDAPEILTVIGKIP+LSEFLNSLY CQYKSFF+AFAGLT+ IKLDRYLHPHFRYYMRE+RTVVYSQFLESYKSVTIEAMAKAFGVTVDFIDLELSRFI+AGKLHCKIDKVAGVLETNRPD+KNALYQ+TIKQGDFLLNRIQKLSRVIDL
Sbjct:    1 MEGQEGTQEPQLVLAHNLFLLTHPDVQDIEKIRLREEVFASVKADDMAPLYETLAANSVVDLDQSVLDSMRAKIDDELKKLDEKIADAEENLGESEVREAHLAKSLFYIRIGDKEKALEQLKVTETKTVAVGQKMDLVFYTLQLGLFYMDFDLISKSIDKAKNLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAADLFLDSISTFTTYELFPYDTFIFYTVLASIISLDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYDCQYKSFFTAFAGLTEHIKLDRYLHPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVDFIDLELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL 386
Match NameStatsDescription
A0A2J6KTX6E-Value: 0.000e+0, PID: 88.60PCI domain-containing protein {ECO:0000259|PROSITE... [more]
A0A6S7MW66E-Value: 0.000e+0, PID: 88.60PCI domain-containing protein {ECO:0000259|PROSITE... [more]
A0A251RUY6E-Value: 0.000e+0, PID: 87.82(Putative 26S proteasome non-ATPase regulatory sub... [more]
A0A251U139E-Value: 0.000e+0, PID: 86.79(Putative 26S proteasome, regulatory subunit Rpn7,... [more]
A0A5N6LZF7E-Value: 0.000e+0, PID: 87.96PCI domain-containing protein {ECO:0000259|PROSITE... [more]
A0A5B7A1D5E-Value: 0.000e+0, PID: 86.79PCI domain-containing protein {ECO:0000259|PROSITE... [more]
A0A837AUK1E-Value: 0.000e+0, PID: 87.05(26S proteasome non-ATPase regulatory {ECO:0000313... [more]
A0A837A3L3E-Value: 0.000e+0, PID: 87.05(26S proteasome non-ATPase regulatory {ECO:0000313... [more]
A0A5C7H3L9E-Value: 0.000e+0, PID: 86.79PCI domain-containing protein {ECO:0000259|PROSITE... [more]
A0A5B7A1V1E-Value: 0.000e+0, PID: 87.05PCI domain-containing protein {ECO:0000259|PROSITE... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.