Resource Type:
Polypeptide
Name:
XM_017367433.1
Identifier:
XM_017367433.1-protein
Sequence:
MAQQLKRGISRQFSTGSLKNVMRLSFKRQNSLDPRVRTLRFSFGRQSSLD
PIRRTGVDDELSVPENLDSTMQLLFMASRGDVEGVLELLDDGVDVNSIDL
DGRTALHIAACEGHNHVVEILLSRKANIDARDRWGSTAAADAKYYGNVEV
YNILKARGARTPRTRKTPMTVANPREVPEYELNPLELQVRKSDGISKGTY
QLAKWNGTKVSVKILDKESYSDPECINAFKNELTLLEKVRHPNVIQFVGA
VTQNVPMMIVSEYHTRGDLETYLHKKGRLPLSKTLRFALDIARGMNYLHE
CKPDPVIHCDLKPKNILLDSGGQLKIAGFGVLRMSTISPDRAKLLHPGII
DHSNLYVAPEIYNGNIFEKRADVYSFALIIYEMMEGVQPFHPKPPQEAVR
LMCVDGKRPTIKQKSKSYPPELKELIEECWNPQYDLRPTFSDVISKLDKV
ILNCSKQGWKDTFKLPW
Sequence Length:
467
Sequence Checksum:
d661bb5103b0f416749c0b1bb838cec1
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017367433.1, derives from mRNA, XM_017367433.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017367433.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017367433.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZG23 ((Putative Integrin-linked protein kinase family isoform 2 {ECO:0000313|EMBL:MPA43317.1}) (2.7.11.1 {ECO:0000313|EMBL:MPA43317.1}))
HSP 1 Score: 787.334 bits (2032), Expect = 0.000e+0
Identity = 376/469 (80.17%), Postives = 420/469 (89.55%), Query Frame = 0
Match: A0A5B6ZG23 ((Putative Integrin-linked protein kinase family isoform 2 {ECO:0000313|EMBL:MPA43317.1}) (2.7.11.1 {ECO:0000313|EMBL:MPA43317.1}))
HSP 1 Score: 787.334 bits (2032), Expect = 0.000e+0
Identity = 376/469 (80.17%), Postives = 420/469 (89.55%), Query Frame = 0
Query: 1 MAQQLKRGISRQFSTGSLKNVMRLSFKRQNSLDPRVRTLRFSFGRQSSLDPIRRTGVDDELSVPENLDSTMQLLFMASRGDVEGVLELLDDGVDVNSIDLDGRTALHIAACEGHNHVVEILLSRKANIDARDRWGSTAAADAKYYGNVEVYNILKARGARTPRTRKTPMTVANPREVPEYELNPLELQVRKSDGISKGTYQLAKWNGTKVSVKILDKESYSDPECINAFKNELTLLEKVRHPNVIQFVGAVTQNVPMMIVSEYHTRGDLETYLHKKGRLPLSKTLRFALDIARGMNYLHECKPDPVIHCDLKPKNILLDSGGQLKIAGFGVLRMSTISPDRAKLLHP-GIIDHSNLYVAPEIYNGNIFEKRADVYSFALIIYEMMEGVQPFHPKPPQEAVRLMCVDGKRPTIKQKSKSYPPELKELIEECWNPQYDLRPTFSDVISKLDKVILNCSKQG-WKDTFKLPW 467
MA QLKRGISRQFSTGSL++ + SFKRQNSLDPR LRFSFGRQSSLDPI R+ V+DEL+VPENLDSTMQLLFMASRGDV GV +LLD+G+DVNSIDLDGRTALHIAACEGH VV++LLSRKANIDARDRWGSTAAADAKYYGNVEVYNILKARGA+ P+ RKTPM VANPREVPEYELNPLELQVRK DGISKGTYQ+AKWNGTKVSVKILDK+SYSDPE INAFK+ELTLLEKVRHPNV+QFVGAVTQN+PMMIVSEYH +GDL YL KKGRL SK LRFALDIARGMNYLHECKPDP+IHCDLKPKNILLDSG QLK+AGFG++R+S ISPD+AKL+ P ID SNLY+APE+Y +IF++ D YSF LI+YEMMEGVQPFHPK P++AV+LMCV+GKRPT K KSK YPP+LKELIEECW Y +RPTFS++I +LDK+++NCSK G WKDTFKLPW
Sbjct: 3 MAAQLKRGISRQFSTGSLRS-GKFSFKRQNSLDPRRNNLRFSFGRQSSLDPIHRSPVNDELTVPENLDSTMQLLFMASRGDVNGVQDLLDEGIDVNSIDLDGRTALHIAACEGHVDVVKLLLSRKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKIPKIRKTPMVVANPREVPEYELNPLELQVRKGDGISKGTYQVAKWNGTKVSVKILDKDSYSDPESINAFKHELTLLEKVRHPNVVQFVGAVTQNIPMMIVSEYHPKGDLGCYLQKKGRLSPSKALRFALDIARGMNYLHECKPDPIIHCDLKPKNILLDSGSQLKVAGFGLIRLSKISPDKAKLVQPEANIDRSNLYLAPEVYMDDIFDRSVDAYSFGLILYEMMEGVQPFHPKSPEDAVKLMCVEGKRPTFKIKSKHYPPDLKELIEECWATDYVVRPTFSEIIVRLDKIVVNCSKHGWWKDTFKLPW 470
BLAST of XM_017367433.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834SJE4 ((Integrin-linked protein kinase 1-like {ECO:0000313|EMBL:KAF7805298.1}))
HSP 1 Score: 778.474 bits (2009), Expect = 0.000e+0
Identity = 366/470 (77.87%), Postives = 423/470 (90.00%), Query Frame = 0
Match: A0A834SJE4 ((Integrin-linked protein kinase 1-like {ECO:0000313|EMBL:KAF7805298.1}))
HSP 1 Score: 778.474 bits (2009), Expect = 0.000e+0
Identity = 366/470 (77.87%), Postives = 423/470 (90.00%), Query Frame = 0
Query: 1 MAQQLKRGISRQFSTGSLKNVMRLSFKRQNSLDPRVRTLRFSFGRQSSLDPIRRT-GVDDELSVPENLDSTMQLLFMASRGDVEGVLELLDDGVDVNSIDLDGRTALHIAACEGHNHVVEILLSRKANIDARDRWGSTAAADAKYYGNVEVYNILKARGARTPRTRKTPMTVANPREVPEYELNPLELQVRKSDGISKGTYQLAKWNGTKVSVKILDKESYSDPECINAFKNELTLLEKVRHPNVIQFVGAVTQNVPMMIVSEYHTRGDLETYLHKKGRLPLSKTLRFALDIARGMNYLHECKPDPVIHCDLKPKNILLDSGGQLKIAGFGVLRMSTISPDRAKLLHPGI-IDHSNLYVAPEIYNGNIFEKRADVYSFALIIYEMMEGVQPFHPKPPQEAVRLMCVDGKRPTIKQKSKSYPPELKELIEECWNPQYDLRPTFSDVISKLDKVILNCSKQG-WKDTFKLPW 467
+A QLK GISRQFSTGSL+ + F RQ+SLDPR +RFSFGRQSSLDPIRR+ G D +L+VPENLDSTMQLLFMA RGDV+GV +LL++G+DVNSIDLDGRTALHIAACEGH VV++LLSRKANIDARDRWGSTAAADAKYYGN EVYNILK RGA+ P+TRKTPM+VANPREVPEYELNPLELQVRKSDGISKGTYQ+AKWNGTKV+VKILDK+SYSDP+ INAFKNELTLLEKVRHPNV+QFVGAVTQN+PMMIVSEYH +GDL +YL KKGRL SK LRFALDIARGMNYLHECKPDP+IHCDLKPKNILLD+GGQLK+AGFG++R+S ISPDRA+L+ PG ID S+LYVAPE+Y +IF++ D YSF LI+YEM+EG+QPFHPKPP+EA+++MC++GKRP K K+KSYPP+LKELIEECW+P+ +RPTFS+VI +LDK++ NCSKQG WKDTFKLPW
Sbjct: 4 IAAQLKHGISRQFSTGSLRRNLSRQFTRQSSLDPRRNNMRFSFGRQSSLDPIRRSPGDDSDLTVPENLDSTMQLLFMACRGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSRKANIDARDRWGSTAAADAKYYGNTEVYNILKTRGAKVPKTRKTPMSVANPREVPEYELNPLELQVRKSDGISKGTYQVAKWNGTKVAVKILDKDSYSDPDSINAFKNELTLLEKVRHPNVVQFVGAVTQNIPMMIVSEYHPKGDLASYLQKKGRLSPSKALRFALDIARGMNYLHECKPDPIIHCDLKPKNILLDNGGQLKVAGFGMVRLSKISPDRARLVQPGANIDLSSLYVAPEVYKDDIFDRSVDSYSFGLIVYEMIEGIQPFHPKPPEEALKVMCIEGKRPLFKIKTKSYPPDLKELIEECWDPEPVVRPTFSEVIVRLDKIVANCSKQGWWKDTFKLPW 473
BLAST of XM_017367433.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7D9N1 ((Integrin-linked protein kinase family isoform 2 {ECO:0000313|EMBL:KAF5742786.1}))
HSP 1 Score: 772.311 bits (1993), Expect = 0.000e+0
Identity = 364/469 (77.61%), Postives = 413/469 (88.06%), Query Frame = 0
Match: A0A7J7D9N1 ((Integrin-linked protein kinase family isoform 2 {ECO:0000313|EMBL:KAF5742786.1}))
HSP 1 Score: 772.311 bits (1993), Expect = 0.000e+0
Identity = 364/469 (77.61%), Postives = 413/469 (88.06%), Query Frame = 0
Query: 1 MAQQLKRGISRQFSTGSLKNVMRLSFKRQNSLDPRVRTLRFSFGRQSSLDPIRRTGVDDELSVPENLDSTMQLLFMASRGDVEGVLELLDDGVDVNSIDLDGRTALHIAACEGHNHVVEILLSRKANIDARDRWGSTAAADAKYYGNVEVYNILKARGARTPRTRKTPMTVANPREVPEYELNPLELQVRKSDGISKGTYQLAKWNGTKVSVKILDKESYSDPECINAFKNELTLLEKVRHPNVIQFVGAVTQNVPMMIVSEYHTRGDLETYLHKKGRLPLSKTLRFALDIARGMNYLHECKPDPVIHCDLKPKNILLDSGGQLKIAGFGVLRMSTISPDRAKLLHP-GIIDHSNLYVAPEIYNGNIFEKRADVYSFALIIYEMMEGVQPFHPKPPQEAVRLMCVDGKRPTIKQKSKSYPPELKELIEECWNPQYDLRPTFSDVISKLDKVILNCSKQG-WKDTFKLPW 467
+A QLKRGISRQFSTGSL+ F RQ+SLDPR LRFSFGRQSSLDPIRR+ DELSVPENLDSTMQLLF+A R DV GV +LL+DGVDVNSIDLDGRTALHIAACEGH VV+ LLSRKANIDARDRWGSTAAADAKYYGN EVYNILKARGA+ P+TR+TPM VANPREVPEYELNPLELQVRKSDGISKGTYQ+AKWNGTKVSVKILDK+ YSDP+ INAFK+ELTLLEKVRHPNV+QFVGAVTQN+PMMIVSEYH +GDL +YL KKGRL SK LRFALDIARGMNYLHECKPDP+IHCDL+PKNILLDSGGQLK+AGFGV+++S IS D+AKL HP IDHSNLY+APEI+ IF++ D YS+ L++YEM+EGVQPFHPKPP+EA++L+C++ KRP K KS+SYPP+LKELIEECW+P+ +RPTFS +I +LDK++ NCSKQG WKDTFK PW
Sbjct: 4 IAAQLKRGISRQFSTGSLRRTFSRQFTRQSSLDPRRNNLRFSFGRQSSLDPIRRSPAQDELSVPENLDSTMQLLFLACRNDVRGVDDLLNDGVDVNSIDLDGRTALHIAACEGHVEVVKHLLSRKANIDARDRWGSTAAADAKYYGNAEVYNILKARGAKVPKTRRTPMAVANPREVPEYELNPLELQVRKSDGISKGTYQVAKWNGTKVSVKILDKDGYSDPDIINAFKHELTLLEKVRHPNVVQFVGAVTQNIPMMIVSEYHAKGDLGSYLQKKGRLSPSKALRFALDIARGMNYLHECKPDPIIHCDLRPKNILLDSGGQLKVAGFGVIKLSKISSDKAKLAHPDSQIDHSNLYLAPEIFKDEIFDRGVDAYSYGLVLYEMIEGVQPFHPKPPEEALKLLCLEEKRPQFKIKSRSYPPDLKELIEECWDPEPVVRPTFSQIIVRLDKIVANCSKQGWWKDTFKFPW 472
BLAST of XM_017367433.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6A9K8 ((dual specificity protein kinase shkC-like isoform X1 {ECO:0000313|RefSeq:XP_022761446.1}))
HSP 1 Score: 771.541 bits (1991), Expect = 0.000e+0
Identity = 363/469 (77.40%), Postives = 417/469 (88.91%), Query Frame = 0
Match: A0A6P6A9K8 ((dual specificity protein kinase shkC-like isoform X1 {ECO:0000313|RefSeq:XP_022761446.1}))
HSP 1 Score: 771.541 bits (1991), Expect = 0.000e+0
Identity = 363/469 (77.40%), Postives = 417/469 (88.91%), Query Frame = 0
Query: 1 MAQQLKRGISRQFSTGSLKNVMRLSFKRQNSLDPRVRTLRFSFGRQSSLDPIRRTGVDDELSVPENLDSTMQLLFMASRGDVEGVLELLDDGVDVNSIDLDGRTALHIAACEGHNHVVEILLSRKANIDARDRWGSTAAADAKYYGNVEVYNILKARGARTPRTRKTPMTVANPREVPEYELNPLELQVRKSDGISKGTYQLAKWNGTKVSVKILDKESYSDPECINAFKNELTLLEKVRHPNVIQFVGAVTQNVPMMIVSEYHTRGDLETYLHKKGRLPLSKTLRFALDIARGMNYLHECKPDPVIHCDLKPKNILLDSGGQLKIAGFGVLRMSTISPDRAKLLHP-GIIDHSNLYVAPEIYNGNIFEKRADVYSFALIIYEMMEGVQPFHPKPPQEAVRLMCVDGKRPTIKQKSKSYPPELKELIEECWNPQYDLRPTFSDVISKLDKVILNCSKQG-WKDTFKLPW 467
+A QLKRGISRQFSTGSLK F RQ+SLDPR LRFSFGRQSSLDPIRR+ V DEL+VPENLDSTMQLLFMA RGDV+GV +LL++G+DVNSIDLDGRTALHIAACEGH VV++LLSRKANID+RDRWGSTAAADAKYYGNVE YNILKARGA+ P+TRKTPMTVANPREVPEYELNPLELQ+RKSDGI+KG+YQ+AKWNGTKVSVKILDKESYSDPE INAFK+ELTLLEKVRHPNV+QFVGAVTQN+PMMIVSEYH+ GDL +YL KKGRL SK L+FALDIARGMNYLHECKPDP+IHCDLKPKN+LLD+GGQLK+AGFG+LR+S ISPD+AKL HP +D SN+YVAPEIY IF++ D YSF +++YEM+EGV PFHPKP +EAV+LMC++ KRP K KS+SYPP+L+ELIEECW+ + +RPTFS++I +LDK++ N SKQG WKDTFKLPW
Sbjct: 4 LAAQLKRGISRQFSTGSLKRTFSRQFTRQSSLDPRRNNLRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSRKANIDSRDRWGSTAAADAKYYGNVEAYNILKARGAKVPKTRKTPMTVANPREVPEYELNPLELQIRKSDGITKGSYQVAKWNGTKVSVKILDKESYSDPESINAFKHELTLLEKVRHPNVVQFVGAVTQNIPMMIVSEYHSNGDLGSYLQKKGRLSPSKALKFALDIARGMNYLHECKPDPIIHCDLKPKNVLLDNGGQLKVAGFGLLRLSKISPDKAKLAHPDAQVDPSNIYVAPEIYKNVIFDRSVDAYSFGVMLYEMIEGVVPFHPKPAEEAVKLMCLEEKRPQFKTKSRSYPPDLRELIEECWDQEPVVRPTFSEIIVRLDKIVANGSKQGWWKDTFKLPW 472
BLAST of XM_017367433.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6S7M4H2 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 770.77 bits (1989), Expect = 0.000e+0
Identity = 362/467 (77.52%), Postives = 412/467 (88.22%), Query Frame = 0
Match: A0A6S7M4H2 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 770.77 bits (1989), Expect = 0.000e+0
Identity = 362/467 (77.52%), Postives = 412/467 (88.22%), Query Frame = 0
Query: 2 AQQLKRGISRQFSTGSLKNVMRLSFKRQNSLDPRVRTLRFSFGRQSSLDPIRRTGVDDELSVPENLDSTMQLLFMASRGDVEGVLELLDDGVDVNSIDLDGRTALHIAACEGHNHVVEILLSRKANIDARDRWGSTAAADAKYYGNVEVYNILKARGARTPRTRKTPMTVANPREVPEYELNPLELQVRKSDGISKGTYQLAKWNGTKVSVKILDKESYSDPECINAFKNELTLLEKVRHPNVIQFVGAVTQNVPMMIVSEYHTRGDLETYLHKKGRLPLSKTLRFALDIARGMNYLHECKPDPVIHCDLKPKNILLDSGGQLKIAGFGVLRMSTISPDRAKLLHPGIIDHSNLYVAPEIYNGNIFEKRADVYSFALIIYEMMEGVQPFHPKPPQEAVRLMCVDGKRPTIKQKSKSYPPELKELIEECWNPQYDLRPTFSDVISKLDKVILNCSKQG-WKDTFKLPW 467
AQQLKRGISRQFSTGS+K + SFKRQ+S DPR + RFS GRQSSLDP+RRT +D+ ++P NLDSTMQLLF+A + DV+GV ELLDDGVDVNSIDLDGRTALHIAACEGH VV++LLSRKANIDARDRWGSTA ADAKYYGNVE YNILKARGA+ P+TRKTPMTVANPREVPEYELNPLELQ+RKSDGISKGTYQ+AKWNGTKVSVKILDK+SYSDPE INAFK+ELTLLEKVRHPNV+QFVGAVTQN+PMMIVSEYH RGDL +YL KKG+L SK LRFALDIARGMNYLHECKPDP+IHCDL+PKNILLDSGGQLK+AGFG++R+S ISPD+A+L P ID +NLY+APEIY +F++ ADVYSF +I++EMMEG QPFHPKPP+EAV+LMC D KRP K KSK YPP+LKELIEECW P+ +RP FS++I +LDK++ NCSK G WKD FKLPW
Sbjct: 5 AQQLKRGISRQFSTGSMKLSGKFSFKRQSSFDPRTNS-RFSLGRQSSLDPVRRTSANDDFTLPGNLDSTMQLLFLACKNDVQGVKELLDDGVDVNSIDLDGRTALHIAACEGHVEVVQLLLSRKANIDARDRWGSTACADAKYYGNVETYNILKARGAKVPKTRKTPMTVANPREVPEYELNPLELQIRKSDGISKGTYQVAKWNGTKVSVKILDKDSYSDPESINAFKHELTLLEKVRHPNVVQFVGAVTQNIPMMIVSEYHPRGDLRSYLQKKGKLSPSKALRFALDIARGMNYLHECKPDPIIHCDLRPKNILLDSGGQLKVAGFGLIRLSKISPDKARLSRPVTIDRTNLYIAPEIYKDELFDRGADVYSFGIILFEMMEGAQPFHPKPPEEAVKLMCEDLKRPPFKIKSKYYPPDLKELIEECWYPELPIRPKFSEIIIRLDKIVGNCSKHGWWKDAFKLPW 470
BLAST of XM_017367433.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2J6M6G8 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 770 bits (1987), Expect = 0.000e+0
Identity = 361/467 (77.30%), Postives = 412/467 (88.22%), Query Frame = 0
Match: A0A2J6M6G8 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 770 bits (1987), Expect = 0.000e+0
Identity = 361/467 (77.30%), Postives = 412/467 (88.22%), Query Frame = 0
Query: 2 AQQLKRGISRQFSTGSLKNVMRLSFKRQNSLDPRVRTLRFSFGRQSSLDPIRRTGVDDELSVPENLDSTMQLLFMASRGDVEGVLELLDDGVDVNSIDLDGRTALHIAACEGHNHVVEILLSRKANIDARDRWGSTAAADAKYYGNVEVYNILKARGARTPRTRKTPMTVANPREVPEYELNPLELQVRKSDGISKGTYQLAKWNGTKVSVKILDKESYSDPECINAFKNELTLLEKVRHPNVIQFVGAVTQNVPMMIVSEYHTRGDLETYLHKKGRLPLSKTLRFALDIARGMNYLHECKPDPVIHCDLKPKNILLDSGGQLKIAGFGVLRMSTISPDRAKLLHPGIIDHSNLYVAPEIYNGNIFEKRADVYSFALIIYEMMEGVQPFHPKPPQEAVRLMCVDGKRPTIKQKSKSYPPELKELIEECWNPQYDLRPTFSDVISKLDKVILNCSKQG-WKDTFKLPW 467
AQQLKRGISRQFSTGS+K + SFKRQ+S DPR + RFS GRQSSLDP+RRT +D+ ++P NLDSTMQLLF+A + DV+GV ELLDDGVDVNSIDLDGRTALHIAACEGH VV++LLSRKANIDARDRWGSTA ADAKYYGNVE YNILKARGA+ P+TRKTPMTVANPREVPEYELNPLELQ+RKSDGISKGTYQ+AKWNGTKVSVKILDK+SYSDPE INAFK+ELTLLEKVRHPNV+QFVGAVTQN+PMMIVSEYH RGDL +YL KKG+L SK LRFALDIARGMNYLHECKPDP+IHCDL+PKNILLDSGGQLK+AGFG++R+S ISPD+A+L P +D +NLY+APEIY +F++ ADVYSF +I++EMMEG QPFHPKPP+EAV+LMC D KRP K KSK YPP+LKELIEECW P+ +RP FS++I +LDK++ NCSK G WKD FKLPW
Sbjct: 5 AQQLKRGISRQFSTGSMKLSGKFSFKRQSSFDPRTNS-RFSLGRQSSLDPVRRTSANDDFTLPGNLDSTMQLLFLACKNDVQGVKELLDDGVDVNSIDLDGRTALHIAACEGHVEVVQLLLSRKANIDARDRWGSTACADAKYYGNVETYNILKARGAKVPKTRKTPMTVANPREVPEYELNPLELQIRKSDGISKGTYQVAKWNGTKVSVKILDKDSYSDPESINAFKHELTLLEKVRHPNVVQFVGAVTQNIPMMIVSEYHPRGDLRSYLQKKGKLSPSKALRFALDIARGMNYLHECKPDPIIHCDLRPKNILLDSGGQLKVAGFGLIRLSKISPDKARLSRPVTVDRTNLYIAPEIYKDELFDRGADVYSFGIILFEMMEGAQPFHPKPPEEAVKLMCEDLKRPPFKIKSKYYPPDLKELIEECWYPELPIRPKFSEIIIRLDKIVGNCSKHGWWKDAFKLPW 470
BLAST of XM_017367433.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1R3G3L0 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 769.229 bits (1985), Expect = 0.000e+0
Identity = 361/469 (76.97%), Postives = 415/469 (88.49%), Query Frame = 0
Match: A0A1R3G3L0 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 769.229 bits (1985), Expect = 0.000e+0
Identity = 361/469 (76.97%), Postives = 415/469 (88.49%), Query Frame = 0
Query: 1 MAQQLKRGISRQFSTGSLKNVMRLSFKRQNSLDPRVRTLRFSFGRQSSLDPIRRTGVDDELSVPENLDSTMQLLFMASRGDVEGVLELLDDGVDVNSIDLDGRTALHIAACEGHNHVVEILLSRKANIDARDRWGSTAAADAKYYGNVEVYNILKARGARTPRTRKTPMTVANPREVPEYELNPLELQVRKSDGISKGTYQLAKWNGTKVSVKILDKESYSDPECINAFKNELTLLEKVRHPNVIQFVGAVTQNVPMMIVSEYHTRGDLETYLHKKGRLPLSKTLRFALDIARGMNYLHECKPDPVIHCDLKPKNILLDSGGQLKIAGFGVLRMSTISPDRAKLLHPGI-IDHSNLYVAPEIYNGNIFEKRADVYSFALIIYEMMEGVQPFHPKPPQEAVRLMCVDGKRPTIKQKSKSYPPELKELIEECWNPQYDLRPTFSDVISKLDKVILNCSKQG-WKDTFKLPW 467
+A QLKRGISRQFSTGS+K F RQ+SLDPR LRFSFGRQSSLDPIRR+ V DEL+VPENLDSTMQLLFMASRGD +GV +LL+DG+DVNSIDLDGRTALHIAACEGH VV++LLSR+ANIDARDRWGSTAAADAKYYGNVEVYNILKARGA+ P+TRKTPMTV+NPREVPEYELNPLEL VRKSDG +KG+YQ+AKWNGTKV+VKILDK+ YSDPE INAFK+ELTLLEKVRHPNV+QFVGAVTQN+PMMIVSEYH +GDL YL KKGRL LSK LRFALDIARGMNYLHECKPDPVIHCDLKPKN+LLD+GGQLK+AGFG+ R+S ISPD+AKL +D SN+YVAPEIY IF++ D YS+ +++YEM+EGV PFHPKPP+EAV+LMC++GKRP K KS+SYPPEL+ELIEECW+ + +RPTFS++I +LD+++ NCSKQG WKDTFKLPW
Sbjct: 4 LAAQLKRGISRQFSTGSMKRTFSRQFTRQSSLDPRKNNLRFSFGRQSSLDPIRRSPVHDELTVPENLDSTMQLLFMASRGDAKGVEDLLNDGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSRRANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTRKTPMTVSNPREVPEYELNPLELLVRKSDGTAKGSYQVAKWNGTKVAVKILDKDCYSDPESINAFKHELTLLEKVRHPNVVQFVGAVTQNIPMMIVSEYHPKGDLGNYLQKKGRLSLSKALRFALDIARGMNYLHECKPDPVIHCDLKPKNVLLDNGGQLKVAGFGLFRLSKISPDKAKLAQTDAHVDPSNVYVAPEIYKNVIFDRSVDAYSYGIMLYEMIEGVLPFHPKPPEEAVKLMCIEGKRPPFKIKSRSYPPELRELIEECWDQEPVVRPTFSEIIVRLDRIVANCSKQGWWKDTFKLPW 472
BLAST of XM_017367433.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7GS68 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 768.844 bits (1984), Expect = 0.000e+0
Identity = 360/469 (76.76%), Postives = 414/469 (88.27%), Query Frame = 0
Match: A0A7J7GS68 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 768.844 bits (1984), Expect = 0.000e+0
Identity = 360/469 (76.76%), Postives = 414/469 (88.27%), Query Frame = 0
Query: 1 MAQQLKRGISRQFSTGSLKNVMRLSFKRQNSLDPRVRTLRFSFGRQSSLDPIRRTGVDDELSVPENLDSTMQLLFMASRGDVEGVLELLDDGVDVNSIDLDGRTALHIAACEGHNHVVEILLSRKANIDARDRWGSTAAADAKYYGNVEVYNILKARGARTPRTRKTPMTVANPREVPEYELNPLELQVRKSDGISKGTYQLAKWNGTKVSVKILDKESYSDPECINAFKNELTLLEKVRHPNVIQFVGAVTQNVPMMIVSEYHTRGDLETYLHKKGRLPLSKTLRFALDIARGMNYLHECKPDPVIHCDLKPKNILLDSGGQLKIAGFGVLRMSTISPDRAKLLHP-GIIDHSNLYVAPEIYNGNIFEKRADVYSFALIIYEMMEGVQPFHPKPPQEAVRLMCVDGKRPTIKQKSKSYPPELKELIEECWNPQYDLRPTFSDVISKLDKVILNCSKQ-GWKDTFKLPW 467
MA QL+RGISRQFSTGS++ R SF RQNSLDPR LRFSFGRQSSLDPIRR DELSVPENLDSTMQLLFMASRG+V+GV +LLD+G+DVNSIDLDGRTALHIAACEGH VV++LLSRKANIDARDRWGSTAAADAKYYGNV+VYNILKARGA+ P+ RKTPMTVANPREVPEYELNPLELQVRKSDGI+KGTYQ+AKWNGTKV+VKILDK+SYSDPE INAFK+ELTLLEKVRHPNV+QFVGAVTQN+PMMIVSEYH +GD+ +YL KKGR+ SK LR+ALDIARGMNYLHECKPD +IHCDLKPKNILLD+GGQLK+AGFG++R+S ISPD+AKLL P ID SNLY+APE+Y IF++ DVYSF LI+YE++EGVQP HP+ ++A +LMC++G RP K KSK YPP+LKELIEECW+ +RPTFS++I +LD+++ NCSK GWKDTFKLPW
Sbjct: 3 MAAQLRRGISRQFSTGSMRKSGRFSFNRQNSLDPRRNNLRFSFGRQSSLDPIRRNASQDELSVPENLDSTMQLLFMASRGEVKGVQDLLDEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSRKANIDARDRWGSTAAADAKYYGNVDVYNILKARGAKIPKIRKTPMTVANPREVPEYELNPLELQVRKSDGITKGTYQVAKWNGTKVAVKILDKDSYSDPESINAFKHELTLLEKVRHPNVVQFVGAVTQNIPMMIVSEYHPKGDIGSYLQKKGRVSPSKALRYALDIARGMNYLHECKPDAIIHCDLKPKNILLDTGGQLKVAGFGLIRLSKISPDKAKLLQPEAQIDRSNLYMAPEVYKDEIFDRSVDVYSFGLILYEILEGVQPLHPRSAEDAAKLMCLEGNRPIFKNKSKHYPPDLKELIEECWDQGPVIRPTFSEIIIRLDRIVANCSKHGGWKDTFKLPW 471
BLAST of XM_017367433.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZK30 ((Putative Integrin-linked protein kinase family isoform 2 {ECO:0000313|EMBL:MPA43313.1}) (2.7.11.1 {ECO:0000313|EMBL:MPA43313.1}))
HSP 1 Score: 767.303 bits (1980), Expect = 0.000e+0
Identity = 368/470 (78.30%), Postives = 417/470 (88.72%), Query Frame = 0
Match: A0A5B6ZK30 ((Putative Integrin-linked protein kinase family isoform 2 {ECO:0000313|EMBL:MPA43313.1}) (2.7.11.1 {ECO:0000313|EMBL:MPA43313.1}))
HSP 1 Score: 767.303 bits (1980), Expect = 0.000e+0
Identity = 368/470 (78.30%), Postives = 417/470 (88.72%), Query Frame = 0
Query: 1 MAQQLKRGISRQFSTGSLKNVMRLSFKRQNSLDPRVRTLRFSFGRQSSLDPIRRTGVDDELSVPENLDSTMQLLFMASRGDVEGVLELLDDGVDVNSIDLDGRTALHIAACEGHNHVVEILLSRKANIDARDRWGSTAAADAKYYGNVEVYNILKARGARTPRTRKTPMTVANPREVPEYELNPLELQVRKSDGISKGTYQLAKWNGTKVSVKILDKESYSDPECINAFKNELTLLEKVRHPNVIQFVGAVTQNVPMMIVSEYHTRGDLETYLHKKGRLPLSKTLRFALDIARGMNYLHECKPDPVIHCDLKPKNILLDSGGQLKIAGFGVLRMSTISPDRAKLLHP-GIIDHSNLYVAPEIYNGNIFEKRADVYSFALIIYEMMEGVQPFHPKPPQEAVRLMCVDGKR-PTIKQKSKSYPPELKELIEECWNPQYDLRPTFSDVISKLDKVILNCSKQG-WKDTFKLPW 467
MA QLKRGISRQFSTGSL++ + SFKRQNSLDPR LRFSFGRQSSLDPI R+ V+DEL+VPENLDSTMQLLFMASRGDV GV +LLD+G+DVNSIDLDGRTALHIAACEGH VV++LLSRKANIDARDRWGSTAAADAKYYGNVEVYNILKARGA+ P+ RKTPM VANPREVPEYELNPLELQVRK DGISKGTYQ+AKWNGTKVSVKILDK+SYSDPE INAFK+ELTLLE+VRHPNV+QFVGAVTQN+PMMIVSEYH +GDL YL KKGRL S+ LRFALDIARGMNYLHECKPDP+IHCDLKPKNILLDSG QLK+AGFG++R+S SP +AKLL P G ID S+LYVAPE+Y IF++ DVYSF LI+YEMMEGVQPFHPK P++A +L+C++GKR P K KSK Y P+LKELIEECW+ ++ +RPTFS++I +LD+++ NCSK G WKDTFKLPW
Sbjct: 3 MAAQLKRGISRQFSTGSLRS-GKFSFKRQNSLDPRRNNLRFSFGRQSSLDPIHRSPVNDELTVPENLDSTMQLLFMASRGDVNGVQDLLDEGIDVNSIDLDGRTALHIAACEGHVDVVKLLLSRKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKIPKIRKTPMVVANPREVPEYELNPLELQVRKGDGISKGTYQVAKWNGTKVSVKILDKDSYSDPESINAFKHELTLLERVRHPNVVQFVGAVTQNIPMMIVSEYHPKGDLGCYLQKKGRLSPSRALRFALDIARGMNYLHECKPDPIIHCDLKPKNILLDSGSQLKVAGFGLIRLSKFSPYKAKLLQPEGNIDRSSLYVAPEVYKDEIFDRSVDVYSFGLILYEMMEGVQPFHPKSPEDAAKLLCLEGKRPPAFKIKSKYYLPDLKELIEECWDAEHVIRPTFSEIIVRLDRIVANCSKHGWWKDTFKLPW 471
BLAST of XM_017367433.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5ABV8 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 766.148 bits (1977), Expect = 0.000e+0
Identity = 360/469 (76.76%), Postives = 415/469 (88.49%), Query Frame = 0
Match: A0A5J5ABV8 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 766.148 bits (1977), Expect = 0.000e+0
Identity = 360/469 (76.76%), Postives = 415/469 (88.49%), Query Frame = 0
Query: 1 MAQQLKRGISRQFSTGSLKNVMRLSFKRQNSLDPRVRTLRFSFGRQSSLDPIRRTGVDDELSVPENLDSTMQLLFMASRGDVEGVLELLDDGVDVNSIDLDGRTALHIAACEGHNHVVEILLSRKANIDARDRWGSTAAADAKYYGNVEVYNILKARGARTPRTRKTPMTVANPREVPEYELNPLELQVRKSDGISKGTYQLAKWNGTKVSVKILDKESYSDPECINAFKNELTLLEKVRHPNVIQFVGAVTQNVPMMIVSEYHTRGDLETYLHKKGRLPLSKTLRFALDIARGMNYLHECKPDPVIHCDLKPKNILLDSGGQLKIAGFGVLRMSTISPDRAKLLHP-GIIDHSNLYVAPEIYNGNIFEKRADVYSFALIIYEMMEGVQPFHPKPPQEAVRLMCVDGKRPTIKQKSKSYPPELKELIEECWNPQYDLRPTFSDVISKLDKVILNCSKQG-WKDTFKLPW 467
+A QLKRGISRQFSTGSL+ + SFKRQNSLDPR LRFSFGRQSSLDP R+ ++D+L+VPENLDST+QLLFMA +GDV+GV +LLD+G+DVNSIDLDGRTALHIAACEGH VV++LLSRKANIDARDRWGSTAAADAKYYGNVEVYNILKARGA+ P+ RKTPM VANPREVPEYELNPLELQVRK D ISKGTYQ+AKWNGTKVSVKILDK+SYSDPE INAFK+ELTLLEKVRHPNV+QFVGAVTQN+PMMIVSEYH +GDL +L KKGRL K LRFALDIARGMNYLHECKPDP+IHCDLKPKN+LLDSG QLK+AGFG++R+S +SP +AKLL P ID S+LYVAPE+Y G IF++ DVYSF LI+YEMMEGVQPFHPK P++A +L+C++GKRPT K KSK YPP+LKEL+EECW +Y +RPTF+++I +LD+++ NCSK G WKDTFKLPW
Sbjct: 3 IAAQLKRGISRQFSTGSLRMSGKFSFKRQNSLDPRRNNLRFSFGRQSSLDPFHRSLLNDDLTVPENLDSTIQLLFMACKGDVKGVQDLLDEGIDVNSIDLDGRTALHIAACEGHVDVVKLLLSRKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKIRKTPMVVANPREVPEYELNPLELQVRKGDVISKGTYQVAKWNGTKVSVKILDKDSYSDPESINAFKHELTLLEKVRHPNVVQFVGAVTQNIPMMIVSEYHPKGDLGCHLQKKGRLSPLKALRFALDIARGMNYLHECKPDPIIHCDLKPKNVLLDSGSQLKVAGFGLIRLSKMSPYKAKLLQPEANIDRSSLYVAPEVYRGEIFDRSVDVYSFGLILYEMMEGVQPFHPKSPEDAAKLLCLEGKRPTFKNKSKHYPPDLKELVEECWAAEYVVRPTFAEIIVRLDRIVANCSKHGWWKDTFKLPW 471
| Match Name | Stats | Description |
|---|---|---|
| A0A5B6ZG23 | E-Value: 0.000e+0, PID: 80.17 | (Putative Integrin-linked protein kinase family is... [more] |
| A0A834SJE4 | E-Value: 0.000e+0, PID: 77.87 | (Integrin-linked protein kinase 1-like {ECO:000031... [more] |
| A0A7J7D9N1 | E-Value: 0.000e+0, PID: 77.61 | (Integrin-linked protein kinase family isoform 2 {... [more] |
| A0A6P6A9K8 | E-Value: 0.000e+0, PID: 77.40 | (dual specificity protein kinase shkC-like isoform... [more] |
| A0A6S7M4H2 | E-Value: 0.000e+0, PID: 77.52 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A2J6M6G8 | E-Value: 0.000e+0, PID: 77.30 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A1R3G3L0 | E-Value: 0.000e+0, PID: 76.97 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A7J7GS68 | E-Value: 0.000e+0, PID: 76.76 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A5B6ZK30 | E-Value: 0.000e+0, PID: 78.30 | (Putative Integrin-linked protein kinase family is... [more] |
| A0A5J5ABV8 | E-Value: 0.000e+0, PID: 76.76 | Protein kinase domain-containing protein {ECO:0000... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |