Resource Type:
Polypeptide
Name:
XM_017367814.1
Identifier:
XM_017367814.1-protein
Sequence:
MQSIMLHTFSPPPLSLNCLFSGYSASSTISRPRFINLRFDFCGRKLDLGF
RKNSSAVNVGTKDISYVRNVREDDENEEDDDDSDMDWEAEFIGDLDPLGF
LPPKKRKEQKESKLLQDTENMDWCVRARKVAVKSIEARGLTRKLENIVNR
RMNKKKKKKPVLNKKKGDKVLKVDIDDSDVESELEEDDIGLVNLNTLQDA
NELKNAVSMLAGGMFAEKREKTMETFVQRLSQFSGPSDRRKEINLNRDIV
EAQTAQEVLEVTSEMIIAVGKGLSPSPLSPLNIATALHRIAKNMEKVSMM
RTHRLAFARQREMSMLVGTAMMALPDCSPQGVSNIAWALSKIGGELLYLS
EMDRVAEVALTKVGEFNSQNVANIAGAFASMQHSAPELFVVLSKRASSII
HTFQAQEIAQLLWAFASLDEPVDAVLESLDNVFKDLDQFKCCPAEEKVNY
IEARSIETNLDDVVDYPVLTFNRDQLGNISWSYAVFGQMERSFFSHVWKT
LSHFEEQQISEQYREDIMFASQAYLVNQCLKVEYPQLRLALRSDLEEKIV
RAGRTKRFNQKMTSSFQKEVGRLLVSTGIDWTKEYVVDGYSLDAVSVDQN
VVLEIDGPTHFSRNTGVPLGHTVLKRRYITAAGWKLVSVSHNEWEELHGE
FEQLDYLRKILEDHIGGGSDSDTQ
Sequence Length:
674
Sequence Checksum:
d8a95e4bf36e2bc61dcad19a1ae7f123
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017367814.1, derives from mRNA, XM_017367814.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017367814.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017367814.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834YMD2 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8391739.1}))
HSP 1 Score: 871.307 bits (2250), Expect = 0.000e+0
Identity = 438/662 (66.16%), Postives = 523/662 (79.00%), Query Frame = 0
Match: A0A834YMD2 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8391739.1}))
HSP 1 Score: 871.307 bits (2250), Expect = 0.000e+0
Identity = 438/662 (66.16%), Postives = 523/662 (79.00%), Query Frame = 0
Query: 19 LFSGYSASSTISRP-RF------INLRFDFCGRKLDLGF-RKNSSAVNVGTKDISYVRNVREDDENEEDDDDSDMDWEAEFIGDLDPLGFLPPKKRKEQKESKLLQDTENMDWCVRARKVAVKSIEARGLTRKLENIVNRRMNKKKKKKPVLNKKKGDKVLKVDIDDSDVESELEEDDIGLVNLNTLQDANELKNAVSMLAGGMFAEKREKTMETFVQRLSQFSGPSDRRKEINLNRDIVEAQTAQEVLEVTSEMIIAVGKGLSPSPLSPLNIATALHRIAKNMEKVSMMRTHRLAFARQREMSMLVGTAMMALPDCSPQGVSNIAWALSKIGGELLYLSEMDRVAEVALTKVGEFNSQNVANIAGAFASMQHSAPELFVVLSKRASSIIHTFQAQEIAQLLWAFASLDEPVDAVLESLDNVFKDLDQFKCCPAEEKVNYIEARSIET----NLDDVVDYPVLTFNRDQLGNISWSYAVFGQMERSFFSHVWKTLSHFEEQQISEQYREDIMFASQAYLVNQCLKVEYPQLRLALRSDLEEKIVRAGRTKRFNQKMTSSFQKEVGRLLVSTGIDWTKEYVVDGYSLDAVSVDQNVVLEIDGPTHFSRNTGVPLGHTVLKRRYITAAGWKLVSVSHNEWEELHGEFEQLDYLRKILEDHIGGG 668
LF+ + + P RF IN+R K +LGF R+N + +N + V++V EE+ +S MDWE EF+G+LDPLGF PPKKR QK +KLLQDT+ MDWC+RARKVA+KSIEARGLTR +E+++ + KK K + NK++ +K K+ +DS E D++ + +N L+ +S++AGGMF E+REKTME+FVQRLSQFSGPSDR+KEI LN+ +VEA+TA+EVLEV +E I+AVGKGL+PSPL+PLNIATALHRIAKNMEKVSMM++ RLAFARQREMSMLVG AM ALP+CS QG+SNI+WALSKIGGELLYLSEMDRVAEVA+TKVGEFNSQNVAN+AGAFASMQHSAP+LF LSKRAS II+ FQ QE+AQ+LWAFASL EP D +L+SLDN FKD + FKCC EE + E R +E L++ +D PVL FNRDQLGN++WSYAV G+M+R FFSHVWKTL FEEQ+ISEQYREDIMFASQ +LVNQCLK+EYP L+LALRSDLEEKI RAG TKRFNQK+ SSFQKEV RLL+STG+DW +EY VD Y+LDAV VDQ V LEIDGPTHFSRN+G PLGHT+LKRRYITAAGWKLVS+SH EWEEL G FEQLDYLRKIL+DHIG G
Sbjct: 4 LFNAFPPQRCLQPPLRFTHNTPLINIRSGVFNHKFELGFLRRNRNCINTSRDVLVGVKSV------EENKQESGMDWELEFLGELDPLGFQPPKKRTRQK-TKLLQDTDGMDWCMRARKVALKSIEARGLTRTMEDLITVKKKKKNKSRWS-NKERINKKNKILDEDS------ENDELDIEEMNPADGTGHLRKTLSLMAGGMFEERREKTMESFVQRLSQFSGPSDRKKEITLNKLMVEARTAEEVLEVAAETIMAVGKGLNPSPLTPLNIATALHRIAKNMEKVSMMKSRRLAFARQREMSMLVGIAMAALPECSAQGISNISWALSKIGGELLYLSEMDRVAEVAVTKVGEFNSQNVANVAGAFASMQHSAPDLFSELSKRASDIIYNFQEQELAQVLWAFASLYEPADPLLDSLDNAFKDANHFKCCLDEETSSPKEERYVECIEDLYLEESLDSPVLNFNRDQLGNVAWSYAVLGKMDRIFFSHVWKTLRRFEEQRISEQYREDIMFASQVHLVNQCLKLEYPHLQLALRSDLEEKIARAGNTKRFNQKVISSFQKEVARLLISTGLDWIREYTVDVYTLDAVLVDQKVALEIDGPTHFSRNSGFPLGHTMLKRRYITAAGWKLVSLSHQEWEELQGGFEQLDYLRKILKDHIGEG 651
BLAST of XM_017367814.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6HAZ3 (RAP domain-containing protein {ECO:0000259|PROSITE:PS51286})
HSP 1 Score: 868.996 bits (2244), Expect = 0.000e+0
Identity = 438/638 (68.65%), Postives = 513/638 (80.41%), Query Frame = 0
Match: F6HAZ3 (RAP domain-containing protein {ECO:0000259|PROSITE:PS51286})
HSP 1 Score: 868.996 bits (2244), Expect = 0.000e+0
Identity = 438/638 (68.65%), Postives = 513/638 (80.41%), Query Frame = 0
Query: 45 KLDLGF---RKNSSAVNVGTKDISYVRNVREDDENEEDDDDSDMDWEAEFIGDLDPLGFLPPKKRKEQKE-SKLLQDTENMDWCVRARKVAVKSIEARGLTRKLENIVNRRMNKKKKKKPVLNKKKGDKVLKVDIDDSDVESELEEDDIGLVNLNTLQDANELKNAVSMLAGGMFAEKREKTMETFVQRLSQFSGPSDRRKEINLNRDIVEAQTAQEVLEVTSEMIIAVGKGLSPSPLSPLNIATALHRIAKNMEKVSMMRTHRLAFARQREMSMLVGTAMMALPDCSPQGVSNIAWALSKIGGELLYLSEMDRVAEVALTKVGEFNSQNVANIAGAFASMQHSAPELFVVLSKRASSIIHTFQAQEIAQLLWAFASLDEPVDAVLESLDNVFKDLDQFKCCPAEEKVNYIEARSIETN----LDDVVDYPVLTFNRDQLGNISWSYAVFGQMERSFFSHVWKTLSHFEEQQISEQYREDIMFASQAYLVNQCLKVEYPQLRLALRSDLEEKIVRAGRTKRFNQKMTSSFQKEVGRLLVSTGIDWTKEYVVDGYSLDAVSVDQNVVLEIDGPTHFSRNTGVPLGHTVLKRRYITAAGWKLVSVSHNEWEELHGEFEQLDYLRKILEDHIGGGSDSDTQ 674
K+ GF R+N N+ D VR+V +D+ E S+MDWE EF+G+LDPLGF PKKRK++++ SKLL+DT+ MDWCV+ARK+A+KSIEARGLTR +E+++ + K KKK K K + +D E I L +N L A+ L+ VSM+AGGMF EK+EKTM+ FVQRLSQFSGPSDRRKEINLN+ IVEAQTA+EVLEV +E I+AVGKGLSPSPLSPLNIATALHRIAKNMEKVSMM + RLAFARQ+EMSMLVG AM ALP+CS QG+SNI+WALSKIGGELLYLSEMDRVAEVALTKV +FNSQNVAN+AGAFASM+HSAP+LF LS+RAS+I+H FQ QE+AQ+LWAFASL+EP +LESLDNVF D +QFKCC +E + Y E +E N ++++ P L F RDQLGNI+WSYAV GQM+R FFSHVWKTLSHFEEQ+ISEQYREDIMFASQ +LVNQCLK+EYP LRL+LRSDLEEK+ RAG+TKRFNQKMTSSFQKEV LLVSTG+DW +EYVVDGY+LDAV VDQ V LEIDGPTHFSRN+GVPLGHT+LKRRYITAAGWKL SVSH EWEEL G FEQLDYLR+IL+DHIG GS + Q
Sbjct: 30 KIATGFSTIRRNCG--NIERNDTVDVRSVDSNDKQE-----SEMDWELEFLGELDPLGFQAPKKRKKREQGSKLLEDTDGMDWCVKARKMALKSIEARGLTRTMEDLITVKKKKNNKKKLGKKDKISKKSKVSEEEDDSDED------IELKGVNPLDGADRLRKTVSMVAGGMFEEKKEKTMQAFVQRLSQFSGPSDRRKEINLNKAIVEAQTAEEVLEVAAETIMAVGKGLSPSPLSPLNIATALHRIAKNMEKVSMMTSRRLAFARQKEMSMLVGIAMTALPECSAQGISNISWALSKIGGELLYLSEMDRVAEVALTKVEQFNSQNVANVAGAFASMRHSAPDLFSELSERASNIVHNFQEQELAQVLWAFASLNEPAGPLLESLDNVFNDENQFKCCLDQETLKYNEESVVENNGDLAMEEISGSPALNFKRDQLGNIAWSYAVLGQMDRVFFSHVWKTLSHFEEQRISEQYREDIMFASQVHLVNQCLKLEYPHLRLSLRSDLEEKVARAGKTKRFNQKMTSSFQKEVAHLLVSTGLDWVREYVVDGYTLDAVLVDQKVALEIDGPTHFSRNSGVPLGHTMLKRRYITAAGWKLASVSHQEWEELQGGFEQLDYLREILKDHIGEGSANIVQ 654
BLAST of XM_017367814.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0E4L4 ((Similar to RAP {ECO:0000313|EMBL:GFY81222.1}))
HSP 1 Score: 868.611 bits (2243), Expect = 0.000e+0
Identity = 445/680 (65.44%), Postives = 529/680 (77.79%), Query Frame = 0
Match: A0A7J0E4L4 ((Similar to RAP {ECO:0000313|EMBL:GFY81222.1}))
HSP 1 Score: 868.611 bits (2243), Expect = 0.000e+0
Identity = 445/680 (65.44%), Postives = 529/680 (77.79%), Query Frame = 0
Query: 10 SPPPLSLNCLFSGYSASSTISRPR-----FINLRFDFCGRK-LDLGFRKNSSAVNVGTKDISYVRNVREDDENEEDDDDSDMDWEAEFIGDLDPLGFLPPKKRKEQKE---SKLLQDTENMDWCVRARKVAVKSIEARGLTRKLENIV--------NRRMNKKKKKKPVLNKKKGDKVLKVDIDDSDVESELEEDDIGLVNLNTLQDANELKNAVSMLAGGMFAEKREKTMETFVQRLSQFSGPSDRRKEINLNRDIVEAQTAQEVLEVTSEMIIAVGKGLSPSPLSPLNIATALHRIAKNMEKVSMMRTHRLAFARQREMSMLVGTAMMALPDCSPQGVSNIAWALSKIGGELLYLSEMDRVAEVALTKVGEFNSQNVANIAGAFASMQHSAPELFVVLSKRASSIIHTFQAQEIAQLLWAFASLDEPVDAVLESLDNVFKDLDQFKCCPAEEKVNYIEARSIETNLD---DVVDYPVLTFNRDQLGNISWSYAVFGQMERSFFSHVWKTLSHFEEQQISEQYREDIMFASQAYLVNQCLKVEYPQLRLALRSDLEEKIVRAGRTKRFNQKMTSSFQKEVGRLLVSTGIDWTKEYVVDGYSLDAVSVDQNVVLEIDGPTHFSRNTGVPLGHTVLKRRYITAAGWKLVSVSHNEWEELHGEFEQLDYLRKILEDHIGGGS 669
SP P L +F A+ST+ +P + RF K + R+ +++ G + + + + E D+ D M+WE +F+G LDPL LPPK+RK+ +E S+ LQDTE MDWCVRARKVA+KSIE RGLT +E ++ ++ K +K + K K D V+ +DSD +S LEED L NT ++L+ VSM+AGGMFAE++ KTMETFVQRLSQFSGPSDR KEINLNR IVEAQTA+EVL+VT+E I+AV KGLSPSPLSPLNIATALHRIAKNMEKV M +T RLAFAR+REMSMLVG AM +LP+CSPQG+SNI+WALSKIGGELLYLSEMDRVAEVA+TKVGEFNSQNVANIAGAFASMQHSAP LF LSKRAS+IIHTFQ QE+AQ+LWAFASL EP D +LESLDN FK+ DQFKCC EE +Y E R +E+N D++ P+L FNRDQLGNI+WSYAV G+M+R+FFSHVW+TLSHFEEQ+ISEQYREDIMFASQ +L NQCLK+EYP L+L+LRSDLEEKI RAG+TKRFNQKMTSSFQKEV RLLV+TG+DW +EYVVDGYSLD V VDQ V LEIDGPTHF+RN+ VPLGHT+LKRRYI AAGWK+VS+SH+EWEEL G FEQL+YLR+IL+DHIG GS
Sbjct: 12 SPLPPILPLVFLNPKATSTLRKPHHQFPLLSHARFSIRKPKTYCVATRREDNSL--GFLNYGGDDDDGDYQQEEGDEQDYTMEWELKFLGALDPLNHLPPKERKQLQEKQYSERLQDTEEMDWCVRARKVALKSIETRGLTGSMEELIVGKKKKKKKKKSKSKIIEKKLETKSKKDGVVD---EDSDFDSSLEED-FELGYGNTHDGRSDLRRTVSMMAGGMFAERKGKTMETFVQRLSQFSGPSDRMKEINLNRAIVEAQTAEEVLKVTAETIVAVAKGLSPSPLSPLNIATALHRIAKNMEKVLMAKTRRLAFARKREMSMLVGIAMTSLPECSPQGISNISWALSKIGGELLYLSEMDRVAEVAVTKVGEFNSQNVANIAGAFASMQHSAPNLFSELSKRASNIIHTFQEQELAQMLWAFASLYEPADPLLESLDNTFKNADQFKCCLHEEP-DYGEERRMESNSHPGLDILGSPLLNFNRDQLGNIAWSYAVLGEMDRTFFSHVWRTLSHFEEQRISEQYREDIMFASQVHLANQCLKLEYPHLQLSLRSDLEEKIARAGKTKRFNQKMTSSFQKEVARLLVATGLDWVREYVVDGYSLDGVLVDQKVALEIDGPTHFARNSKVPLGHTMLKRRYIAAAGWKIVSMSHHEWEELQGGFEQLEYLREILKDHIGEGS 684
BLAST of XM_017367814.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7C0R0 (RAP domain-containing protein {ECO:0000259|PROSITE:PS51286})
HSP 1 Score: 867.455 bits (2240), Expect = 0.000e+0
Identity = 450/674 (66.77%), Postives = 525/674 (77.89%), Query Frame = 0
Match: A0A5B7C0R0 (RAP domain-containing protein {ECO:0000259|PROSITE:PS51286})
HSP 1 Score: 867.455 bits (2240), Expect = 0.000e+0
Identity = 450/674 (66.77%), Postives = 525/674 (77.89%), Query Frame = 0
Query: 5 MLHTFSPPPLSLNCLFSGYSASSTISR----PRFINLRFDFCGRKLDLGFRKNSSAVNVGTKDISYVRNVREDDENEEDDDDSDMDWEAEFIGDLDPLGFLPPKKRKEQKESKLLQDTENMDWCVRARKVAVKSIEARGLTRKLENIVNRRMNKKKKKKPVLNKKKGDKVLKVDID-DSDVESELEEDDIGLVNLNTLQDANELKNAVSMLAGGMFAEKREKTMETFVQRLSQFSGPSDRRKEINLNRDIVEAQTAQEVLEVTSEMIIAVGKGLSPSPLSPLNIATALHRIAKNMEKVSMMRTHRLAFARQREMSMLVGTAMMALPDCSPQGVSNIAWALSKIGGELLYLSEMDRVAEVALTKVGEFNSQNVANIAGAFASMQHSAPELFVVLSKRASSIIHTFQAQEIAQLLWAFASLDEPVDAVLESLDNVFKDLDQFKCCPAEEKVNYIEARSIETN----LDDVVDYPVLTFNRDQLGNISWSYAVFGQMERSFFSHVWKTLSHFEEQQISEQYREDIMFASQAYLVNQCLKVEYPQLRLALRSDLEEKIVRAGRTKRFNQKMTSSFQKEVGRLLVSTGIDWTKEYVVDGYSLDAVSVDQNVVLEIDGPTHFSRNTGVPLGHTVLKRRYITAAGWKLVSVSHNEWEELHGEFEQLDYLRKILEDHIGGGS 669
+L+TF P SL ++ +T+ P N F R+L LGF ++ +N+ + ++N+ +DD++ DMDWE+EF+G+LDPLGFLPPKKRK+QK S+LL D++ MDWCVRARK A+KSIEARGLT +E++V KKK K L K +++ DSD +S E D L N+NT VSM+AGG+F E++EKT E FVQRL QFSGPSDRRKEINLNR IVEAQTA+EVLEVT E I+AVGKGLSPSPLSPLNIATAL+RIAKNMEKVSMMRT RLAFARQREMSMLVG AM ALP+CS QG+SNI+WALSKIGGELLYLSEMDRVAEVALTKVGEFNSQNVAN+AGAFASMQHSAP+LF LSKRAS IIHTF+ QE+AQ+LWAFASL EP D +LESLDN FK ++QF CC E+ +Y E R +E+N LD + P L FNRD LGNI+WSYAV GQM+R FFSHVWKTLSHFEEQ+ISEQYREDIMFASQ +LVNQCLK+EYP L+L+LRSDLEEKI AG+TKRFNQKMTSSFQKEV RLLVSTG+DW +EY VDGY+LDAV VD+ + LEIDGPTHFSRN+GVPLGHT+LKRRYI+ AGWKLVSVS EWEEL G FEQ DYLRK+LE H+G GS
Sbjct: 4 LLNTFPHPQRSLQPPLVVFNPKTTLLHNHHVPMTTNTTTPFSNRRLHLGFFPKNNCINIKRDNSLGIKNMDDDDDDN-----DDMDWESEFVGELDPLGFLPPKKRKQQK-SRLLDDSDEMDWCVRARKSALKSIEARGLTSTMEDLVTVNKKTKKKNKKKLANKNKIDKKDKELEEDSDFDSR--EKDFELQNMNT---------TVSMIAGGLFEERKEKTKEAFVQRLLQFSGPSDRRKEINLNRAIVEAQTAEEVLEVTVETIMAVGKGLSPSPLSPLNIATALNRIAKNMEKVSMMRTRRLAFARQREMSMLVGIAMTALPECSAQGISNISWALSKIGGELLYLSEMDRVAEVALTKVGEFNSQNVANLAGAFASMQHSAPDLFSELSKRASDIIHTFREQELAQVLWAFASLYEPADPMLESLDNAFKSINQFNCCLGEKTPDYSEERGMESNAVPDLDRFLGSPSLNFNRDHLGNIAWSYAVLGQMDRVFFSHVWKTLSHFEEQRISEQYREDIMFASQVHLVNQCLKLEYPHLQLSLRSDLEEKIAHAGKTKRFNQKMTSSFQKEVARLLVSTGLDWVREYAVDGYTLDAVLVDKKIALEIDGPTHFSRNSGVPLGHTILKRRYISTAGWKLVSVSLQEWEELQGGFEQQDYLRKVLEVHLGEGS 660
BLAST of XM_017367814.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6S0H3 (RAP domain-containing protein {ECO:0000259|PROSITE:PS51286})
HSP 1 Score: 862.448 bits (2227), Expect = 0.000e+0
Identity = 430/612 (70.26%), Postives = 504/612 (82.35%), Query Frame = 0
Match: A0A2R6S0H3 (RAP domain-containing protein {ECO:0000259|PROSITE:PS51286})
HSP 1 Score: 862.448 bits (2227), Expect = 0.000e+0
Identity = 430/612 (70.26%), Postives = 504/612 (82.35%), Query Frame = 0
Query: 73 DDENEE-DDDDSDMDWEAEFIGDLDPLGFLPPKKRKEQKE---SKLLQDTENMDWCVRARKVAVKSIEARGLTRKLENIV--------NRRMNKKKKKKPVLNKKKGDKVLKVDIDDSDVESELEEDDIGLVNLNTLQDANELKNAVSMLAGGMFAEKREKTMETFVQRLSQFSGPSDRRKEINLNRDIVEAQTAQEVLEVTSEMIIAVGKGLSPSPLSPLNIATALHRIAKNMEKVSMMRTHRLAFARQREMSMLVGTAMMALPDCSPQGVSNIAWALSKIGGELLYLSEMDRVAEVALTKVGEFNSQNVANIAGAFASMQHSAPELFVVLSKRASSIIHTFQAQEIAQLLWAFASLDEPVDAVLESLDNVFKDLDQFKCCPAEEKVNYIEARSIETNLD---DVVDYPVLTFNRDQLGNISWSYAVFGQMERSFFSHVWKTLSHFEEQQISEQYREDIMFASQAYLVNQCLKVEYPQLRLALRSDLEEKIVRAGRTKRFNQKMTSSFQKEVGRLLVSTGIDWTKEYVVDGYSLDAVSVDQNVVLEIDGPTHFSRNTGVPLGHTVLKRRYITAAGWKLVSVSHNEWEELHGEFEQLDYLRKILEDHIGGGS 669
DD+ EE D+ D M+WE +F+G LDPL LPPK+RK+ +E S+ LQDTE MDWCVRARKVA+KSIE RGLT +E ++ ++ K +K + K K D V+ +DSD +S LEED L NT ++L+ VSM+AGGMFAE++ KTMETFVQRLSQFSGPSDR KEINLNR IVEAQTA+EVL+VT+E I+AV KGLSPSPLSPLNIATALHRIAKNMEKV M +T RLAFAR+REMSMLVG AM +LP+CSPQG+SNI+WALSKIGGELLYLSEMDRVAEVA+ KVGEFNSQNVANIAGAFASMQHSAP LF LSKRAS+IIHTFQ QE+AQ+LWAFASL EP D +LESLDN FK+ DQFKC EE +Y E R +E+N D++D P+L FNRDQLGNI+WSYAV G+M+R+FFSHVW+TLSHFEEQ+ISEQYR DIMFASQ +L NQCLK+EYP L+L+LRSDLEEKI RAG+TKRFNQKMTSSFQ+EV RLL++TG+DW +EYVVDGYSLDAV VDQ V LEIDGPTHF+RN+ VPLGHT+LKRRYI AAGWK+VS+SH+EWEEL G FEQL+YLR+IL+D+IG GS
Sbjct: 75 DDQQEEGDEQDYTMEWELKFLGALDPLNHLPPKERKQLQEKQYSERLQDTEEMDWCVRARKVALKSIETRGLTSSMEELIVGKKKKKKKKKSKSKIIEKKLETKSKKDGVVD---EDSDFDSSLEED-FELGYGNTHDGRSDLRRTVSMMAGGMFAERKGKTMETFVQRLSQFSGPSDRMKEINLNRAIVEAQTAEEVLKVTAETIVAVAKGLSPSPLSPLNIATALHRIAKNMEKVLMAKTRRLAFARKREMSMLVGIAMTSLPECSPQGISNISWALSKIGGELLYLSEMDRVAEVAVAKVGEFNSQNVANIAGAFASMQHSAPNLFSELSKRASNIIHTFQEQELAQMLWAFASLYEPADPLLESLDNTFKNADQFKCYLHEEP-DYGEERRMESNSHPGLDILDSPLLNFNRDQLGNIAWSYAVLGEMDRTFFSHVWRTLSHFEEQRISEQYRADIMFASQVHLANQCLKLEYPHLQLSLRSDLEEKIARAGKTKRFNQKMTSSFQQEVARLLIATGLDWVREYVVDGYSLDAVLVDQKVALEIDGPTHFARNSKVPLGHTMLKRRYIAAAGWKIVSMSHHEWEELQGGFEQLEYLREILKDYIGEGS 681
BLAST of XM_017367814.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A5B1L8 (RAP domain-containing protein {ECO:0000259|PROSITE:PS51286})
HSP 1 Score: 856.284 bits (2211), Expect = 0.000e+0
Identity = 438/658 (66.57%), Postives = 513/658 (77.96%), Query Frame = 0
Match: A5B1L8 (RAP domain-containing protein {ECO:0000259|PROSITE:PS51286})
HSP 1 Score: 856.284 bits (2211), Expect = 0.000e+0
Identity = 438/658 (66.57%), Postives = 513/658 (77.96%), Query Frame = 0
Query: 45 KLDLGF---RKNSSAVNVGTKDISYVRNVREDDENEEDDDDSDMDWEAEFIGDLDPLGFLPPKKRKEQKE-SKLLQDTENMDWCVRARKVAVKSIEARGLTRKLENIVNRRMNKKKKKKPVLNKKKGDKVLKVDIDDSDVESELEEDDIGLVNLNTLQDANELKNAVSMLAGGMFAEKREKTMETFVQRLSQFSGPSDRRKEINLNRDIVEAQTAQEVLEVTSEMIIAVGKGLSPSPLSPLNIATALHRIAKNMEKVSMMRTHRLAFARQREMSMLVGTAMMALPDCSPQGVSNIAWALSKIGGELLYLSEMDRVAEVALTKVGEFNSQNVANIAGAFASMQHSAPELFVVLSKRASSIIHTFQAQEIAQLLWAFASLDEPVDAVLESLDNVFKDLDQFKCCPAEEKVNYIEARSIETN----LDDVVDYPVLTFNRDQLGNISWSYAVFGQMERSFFSHVWKTLSHFEEQQISEQYREDIMFASQAYLVNQCLKVEYPQLRLALRSDLEEKIVRAGRTKRFNQKMTSSFQKEVGRLLVSTGIDWTKEYVVDGYSLDAVSVDQNVVLEIDGPTHFSRNTGVPLGHTVLKRRYITAAGWKLVSVSHN--------------------EWEELHGEFEQLDYLRKILEDHIGGGSDSDTQ 674
K+ GF R+N N+ D VR+V +D+ E S+MDWE EF+G+LDPLGF PKKRK++++ SKLL+DT+ MDWCV+ARK+A+KSIEARGLTR +E+++ + K KKK K K + +D E I L +N L A+ L+ VSM+AGGMF EK+EKTM+ FVQRLSQFSGPSDRRKEINLN+ IVEAQTA+EVLEV +E I+AVGKGLSPSPLSPLNIATALHRIAKNMEKVSMM + RLAFARQ+EMSMLVG AM ALP+CS QG+SNI+WALSKIGGELLYLSEMDRVAEVALTKV +FNSQNVAN+AGAFASM+HSAP+LF LS+RAS+I+H FQ QE+AQ+LWAFASL+EP +LESLDNVF D +QFKCC +E + Y E +E N ++++ P L F RDQLGNI+WSYAV GQM+R FFSHVWKTLSHFEEQ+ISEQYREDIMFASQ +LVNQCLK+EYP LRL+LRSDLEEK+ RAG+TKRFNQKMTSSFQKEV LLVSTG+DW +EYVVDGY+LDAV VDQ V LEIDGPTHFSRN+GVPLGHT+LKRRYITAAGWKL SVSH EWEEL G FEQLDYLR+IL+DHIG GS + Q
Sbjct: 30 KIATGFSTIRRNCG--NIERNDTVDVRSVDSNDKQE-----SEMDWELEFLGELDPLGFQAPKKRKKREQGSKLLEDTDGMDWCVKARKMALKSIEARGLTRTMEDLITVKKKKNNKKKLGKKDKISKKSKVSEEEDDSDED------IELKGVNPLDGADRLRKTVSMVAGGMFEEKKEKTMQAFVQRLSQFSGPSDRRKEINLNKAIVEAQTAEEVLEVAAETIMAVGKGLSPSPLSPLNIATALHRIAKNMEKVSMMTSRRLAFARQKEMSMLVGIAMTALPECSAQGISNISWALSKIGGELLYLSEMDRVAEVALTKVEQFNSQNVANVAGAFASMRHSAPDLFSELSERASNIVHNFQEQELAQVLWAFASLNEPAGPLLESLDNVFNDENQFKCCLDQETLKYNEESVVENNGDLAMEEISGSPALNFKRDQLGNIAWSYAVLGQMDRVFFSHVWKTLSHFEEQRISEQYREDIMFASQVHLVNQCLKLEYPHLRLSLRSDLEEKVARAGKTKRFNQKMTSSFQKEVAHLLVSTGLDWVREYVVDGYTLDAVLVDQKVALEIDGPTHFSRNSGVPLGHTMLKRRYITAAGWKLASVSHQERHLLVVFICVSSRGFNTVVEWEELQGGFEQLDYLREILKDHIGEGSANIVQ 674
BLAST of XM_017367814.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9SPJ9 ((RAP domain-containing protein, chloroplastic {ECO:0000313|RefSeq:XP_011072081.1}))
HSP 1 Score: 845.884 bits (2184), Expect = 0.000e+0
Identity = 427/631 (67.67%), Postives = 509/631 (80.67%), Query Frame = 0
Match: A0A6I9SPJ9 ((RAP domain-containing protein, chloroplastic {ECO:0000313|RefSeq:XP_011072081.1}))
HSP 1 Score: 845.884 bits (2184), Expect = 0.000e+0
Identity = 427/631 (67.67%), Postives = 509/631 (80.67%), Query Frame = 0
Query: 50 FRKNSSAVNVGTKDISYVRNVREDDENEEDDDDSD------MDWEAEFIGDLDPLGFLPPKKRKEQKESKLLQDTENMDWCVRARKVAVKSIEARGLTRKLENIVNRRMNKKKKKKPVLNKKKGDKVLKVD-IDDSDVESELEEDDIGLVNLNTLQDANELKNAVSMLAGGMFAEKREKTMETFVQRLSQFSGPSDRRKEINLNRDIVEAQTAQEVLEVTSEMIIAVGKGLSPSPLSPLNIATALHRIAKNMEKVSMMRTHRLAFARQREMSMLVGTAMMALPDCSPQGVSNIAWALSKIGGELLYLSEMDRVAEVALTKVGEFNSQNVANIAGAFASMQHSAPELFVVLSKRASSIIHTFQAQEIAQLLWAFASLDEPVDAVLESLDNVFKDLDQFKCCPAEEKVNYIEARSIETNLD----DVVDYPVLTFNRDQLGNISWSYAVFGQMERSFFSHVWKTLSHFEEQQISEQYREDIMFASQAYLVNQCLKVEYPQLRLALRSDLEEKIVRAGRTKRFNQKMTSSFQKEVGRLLVSTGIDWTKEYVVDGYSLDAVSVDQNVVLEIDGPTHFSRNTGVPLGHTVLKRRYITAAGWKLVSVSHNEWEELHGEFEQLDYLRKILEDHIGGGS 669
+ +N + V V T D Y+ ED +N++D D +WEAEF+G++DP G+LPP+KRK+Q +S+L Q+++ M+WCVRARKVA+KSIEARGLT K+E++V + +KK+KK N+ K DKV ++ DD + E E + D ++++ + L+ VSM+AGGMF E++EK+METFVQRLSQFSGPSDRRKEINLN+ IVEAQTA+EVLEVT+++I AV KGLSPSPLSPLNIATALHRIA+NMEKVSMMRT RL FARQREM MLVG AM ALP+CS QGVSNIAWALSKIGGELLYLSEMDRVAEVALTKV EFNSQNVAN+AGAFASMQHSAPELF LSKRAS+IIHTFQ QEIAQ+LWAFASL P D +LESLDNVFKD+ Q KCC + N + R E+ + + P LTF RDQLGNISWSYAV GQ+ R FFSHVW+TLSHF+EQQ+SEQYREDIMFASQ LVNQCLK+EYP L+L+L ++LE KI RAG+TK+FNQK+TSSFQKEV RLLVSTG+DW KEY V+GY+LDA VDQ V LEIDGP HFSRN+ +PLGHT+LKRR+ITAAGWKL+SVSH EWEEL GEFEQLDYLR+IL++HIG GS
Sbjct: 52 YSRNDNIVAVETAD--YI----EDGDNDDDSVGKDKWTPNIANWEAEFLGEIDPYGYLPPRKRKKQPKSRLSQESDEMEWCVRARKVALKSIEARGLTEKMESLV---IGEKKRKKKKKNQPKIDKVNVLNSTDDDEDEDEDFDIDEADFDVDSPYKTSHLRRKVSMIAGGMFEERKEKSMETFVQRLSQFSGPSDRRKEINLNKSIVEAQTAEEVLEVTADVITAVAKGLSPSPLSPLNIATALHRIARNMEKVSMMRTRRLTFARQREMCMLVGMAMAALPECSAQGVSNIAWALSKIGGELLYLSEMDRVAEVALTKVSEFNSQNVANLAGAFASMQHSAPELFSELSKRASNIIHTFQPQEIAQVLWAFASLYGPADPILESLDNVFKDVKQLKCCLDNKSSNVDDERGAESTGNFVDSEASSSPTLTFVRDQLGNISWSYAVLGQLNRVFFSHVWRTLSHFKEQQVSEQYREDIMFASQLNLVNQCLKLEYPHLQLSLPNELENKITRAGQTKKFNQKVTSSFQKEVARLLVSTGLDWVKEYNVEGYTLDAALVDQKVALEIDGPMHFSRNSAIPLGHTMLKRRFITAAGWKLISVSHQEWEELQGEFEQLDYLRRILDNHIGKGS 673
BLAST of XM_017367814.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5E4FCJ8 ((Full=PREDICTED: RAP {ECO:0000313|EMBL:VVA25675.1}))
HSP 1 Score: 837.795 bits (2163), Expect = 0.000e+0
Identity = 432/633 (68.25%), Postives = 517/633 (81.67%), Query Frame = 0
Match: A0A5E4FCJ8 ((Full=PREDICTED: RAP {ECO:0000313|EMBL:VVA25675.1}))
HSP 1 Score: 837.795 bits (2163), Expect = 0.000e+0
Identity = 432/633 (68.25%), Postives = 517/633 (81.67%), Query Frame = 0
Query: 38 RFDFCGRKLDLGFRKNSSAVNVGTKDISYV-RNVREDDENEEDDDDSDMDWEAEFIGDLDPLGFLPPKKRKEQKESKLLQDTENMDWCVRARKVAVKSIEARGLTRKLENIVNRRMNKKKKKKPVLNKKKGDKVLKVDIDDSDVESELEEDDIGLVNLNTLQDANELKNAVSMLAGGMFAEKREKTMETFVQRLSQFSGPSDRRKEINLNRDIVEAQTAQEVLEVTSEMIIAVGKGLSPSPLSPLNIATALHRIAKNMEKVSMMRTHRLAFARQREMSMLVGTAMMALPDCSPQGVSNIAWALSKIGGELLYLSEMDRVAEVALTKVGEFNSQNVANIAGAFASMQHSAPELFVVLSKRASSIIHTFQAQEIAQLLWAFASLDEPVDAVLESLDNVFKDLDQFKCCPAEEKVNYIEARSIET----NLDDVVDYPVLTFNRDQLGNISWSYAVFGQMERSFFSHVWKTLSHFEEQQISEQYREDIMFASQAYLVNQCLKVEYPQLRLALRSDLEEKIVRAGRTKRFNQKMTSSFQKEVGRLLVSTGIDWTKEYVVDGYSLDAVSVDQNVVLEIDGPTHFSRNTGVPLGHTVLKRRYITAAGWKLVSVSHNEWEELHGEFEQLDYLRKILEDHI 665
R ++L+L F + VNVG + + R+V DDE EE++ D +MDWE EF+GD+DPLGF P KRK+ K SK L+++E MDWCVRARK A+KSIEA+GL+ +E+++ + KK KKK + +K +K +K +D D++SE +D + + NTL A+ L+ VS+LAGGMF EK+EKTME FVQRLSQFSGPSDR+KEINLNR I++AQTA+EVLEVT+E I+AVGKGLSPSPLSPLNIATALHRIAKNMEKVSM+ T RLAFARQREMSMLVG AM ALPDCS QG+SNI+WALSKIGG+L+YLSEMDRVAEVALTKVGEFNSQNVANIAGAFASM+HSAP+LF LSKRAS IIHTFQ QE+AQ+LWAFASL E + +LESLDNVF D QF CC ++E + ++ + D V PVL+F RDQLGNI+WSYAV GQM+R+FFSHVW+TLS FEEQ+ISEQYREDIMFASQ +LVN CLK+EYP L+L+LR DLEEKI RAG+TKRFNQKMTSSFQKEV RLLVSTG+DW KEYVVDGY+LDAV +D+ V +EIDGPTHFSRNTGVPLGHT+LKRRYITAAGWK+VS+SH EWEEL G FEQL+YLR+IL++H+
Sbjct: 31 RTGLLAQRLELVFPRRY-CVNVGADNAAISSRSVESDDEEEEENGDGNMDWELEFLGDIDPLGFQAPNKRKKLKTSKSLEESEGMDWCVRARKTALKSIEAKGLSHLMEDMMTVKKKKKNKKKKLGKIEKVNKKIKEVEEDLDIDSE---EDFDMQDTNTLNGASHLRRTVSVLAGGMFEEKKEKTMEEFVQRLSQFSGPSDRKKEINLNRAIIDAQTAEEVLEVTAETIMAVGKGLSPSPLSPLNIATALHRIAKNMEKVSMIETRRLAFARQREMSMLVGIAMTALPDCSAQGISNISWALSKIGGDLIYLSEMDRVAEVALTKVGEFNSQNVANIAGAFASMKHSAPDLFSELSKRASDIIHTFQEQELAQVLWAFASLSESAEPLLESLDNVFNDESQFICCSSKENSEFDSENGVDNIGDLDFDGVRSSPVLSFRRDQLGNIAWSYAVIGQMDRTFFSHVWRTLSQFEEQRISEQYREDIMFASQVHLVNLCLKLEYPHLQLSLREDLEEKIARAGKTKRFNQKMTSSFQKEVARLLVSTGLDWVKEYVVDGYTLDAVLIDKKVAMEIDGPTHFSRNTGVPLGHTMLKRRYITAAGWKVVSLSHQEWEELQGGFEQLEYLREILKEHL 659
BLAST of XM_017367814.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0G4APR9 ((AT2G31890-like protein {ECO:0000313|EMBL:AKM76706.1}))
HSP 1 Score: 835.484 bits (2157), Expect = 0.000e+0
Identity = 431/643 (67.03%), Postives = 506/643 (78.69%), Query Frame = 0
Match: A0A0G4APR9 ((AT2G31890-like protein {ECO:0000313|EMBL:AKM76706.1}))
HSP 1 Score: 835.484 bits (2157), Expect = 0.000e+0
Identity = 431/643 (67.03%), Postives = 506/643 (78.69%), Query Frame = 0
Query: 35 INLRFDFCGRKLDLGF-RKNSSAVNVGTKDISYVRNVREDDENEEDDDDSDMDWEAEFIGDLDPLGFLPPKKRKEQKESKLLQDTENMDWCVRARKVAVKSIEARGLTRKLENIVNRRMNKKKKKKPVLNKKKGDKVLKVDIDDSDVESELEEDDIGLVNLNTLQDANELKNAVSMLAGGMFAEKREKTMETFVQRLSQFSGPSDRRKEINLNRDIVEAQTAQEVLEVTSEMIIAVGKGLSPSPLSPLNIATALHRIAKNMEKVSMMRTHRLAFARQREMSMLVGTAMMALPDCSPQGVSNIAWALSKIGGELLYLSEMDRVAEVALTKVGEFNSQNVANIAGAFASMQHSAPELFVVLSKRASSIIHTFQAQEIAQLLWAFASLDEPVDAVLESLDNVFKDLDQFKCCPAEEKVNYIEARSIE--TNLDDVVDYPVLTFNRDQLGNISWSYAVFGQMERSFFSHVWKTLSHFEEQQISEQYREDIMFASQAYLVNQCLKVEYPQLRLALRSDLEEKIVRAGRTKRFNQKMTSSFQKEVGRLLVSTGIDWTKEYVVDGYSLDAVSVDQNVVLEIDGPTHFSRNTGVPLGHTVLKRRYITAAGWKLVSVSHNEWEELHGEFEQLDYLRKILEDHIGGGSDSDTQ 674
I LR F KLD GF R+N +N+ D S V DD N+ +SD+DWE EF+G+LDP+G+ P KRK+ +SKLLQDTE MDWC+ ARK A+KSIE+RGL +LE +VN + KKKKK K K + D E + + DI NTL DA LKN VSM++GGMF E++EKTME FVQRLSQFSGPSDRRKEI LN+ IV+AQTA+EVLEVT+E I+AVGKGLSPSPLSPLNIATALHRIAK+ME VSM +T RLAFARQREMSMLVG AM ALP+CSPQG+SNI+WALSKIGGELLYLSEMDR+AEV+LT+VGEFNSQNVANI+GAFASMQHSA +LF L+KRAS+IIHTF QE+AQ+LWAFASL EP D + +SLD+ F +QF+C +E NY E E +L V D L F+RDQLGNI+WSYAV GQMER+FFSHVW+TLS FEEQ++SEQYR DIMFASQ LVNQCLK+E P L+L+L DLEEKI RAG+TKRFNQK TSSFQKEV RLLVSTG+DW KEYVVDGY+LDAV VDQ + LEIDGPTHFSRNTGVPLGHT++KRRYITAAGWK+VS+SH EWEEL G FEQL+YLR+IL+DH+G GS ++ +
Sbjct: 33 IKLRTKFVNSKLDEGFVRRN--CINL-RNDSSSTTGV--DDVNK---SESDVDWEMEFLGELDPMGYQAPNKRKKVPKSKLLQDTEGMDWCLNARKAALKSIESRGLAHRLEGLVNIKTKKKKKKDNKKAGIKKKFSKKDKEFEEDSEEDDDWGDID----NTLDDATRLKNTVSMMSGGMFIEQKEKTMEVFVQRLSQFSGPSDRRKEIYLNKAIVDAQTAEEVLEVTAETIMAVGKGLSPSPLSPLNIATALHRIAKSMENVSMTKTRRLAFARQREMSMLVGIAMTALPECSPQGISNISWALSKIGGELLYLSEMDRLAEVSLTRVGEFNSQNVANISGAFASMQHSASDLFSELAKRASNIIHTFSEQELAQVLWAFASLYEPADPLFKSLDDAFNYPNQFQCFSDKETSNYNEENDAEGSADLKRVSDTHSLNFSRDQLGNIAWSYAVLGQMERTFFSHVWRTLSQFEEQRVSEQYRVDIMFASQVQLVNQCLKLELPHLQLSLGGDLEEKISRAGKTKRFNQKTTSSFQKEVARLLVSTGLDWLKEYVVDGYTLDAVVVDQKIALEIDGPTHFSRNTGVPLGHTMVKRRYITAAGWKVVSLSHQEWEELQGGFEQLEYLREILKDHLGEGSTNEQE 663
BLAST of XM_017367814.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2I4G622 ((RAP domain-containing protein, chloroplastic {ECO:0000313|RefSeq:XP_018839338.1}))
HSP 1 Score: 834.713 bits (2155), Expect = 0.000e+0
Identity = 429/629 (68.20%), Postives = 521/629 (82.83%), Query Frame = 0
Match: A0A2I4G622 ((RAP domain-containing protein, chloroplastic {ECO:0000313|RefSeq:XP_018839338.1}))
HSP 1 Score: 834.713 bits (2155), Expect = 0.000e+0
Identity = 429/629 (68.20%), Postives = 521/629 (82.83%), Query Frame = 0
Query: 44 RKLDLGF-RKNSSAVNVGTKDISYVRNVREDDENEEDDDDSDMDWEAEFIGDLDPLGFLPPKKRKEQKESKLLQDTENMDWCVRARKVAVKSIEARGLTRKLENIVNRRMNKKKKKKPVLNKKKGDKVLKVDI-DDSDVESELEEDDIGLVNLNTLQDANELKNAVSMLAGGMFAEKREKTMETFVQRLSQFSGPSDRRKEINLNRDIVEAQTAQEVLEVTSEMIIAVGKGLSPSPLSPLNIATALHRIAKNMEKVSMMRTHRLAFARQREMSMLVGTAMMALPDCSPQGVSNIAWALSKIGGELLYLSEMDRVAEVALTKVGEFNSQNVANIAGAFASMQHSAPELFVVLSKRASSIIHTFQAQEIAQLLWAFASLDEPVDAVLESLDNVFKDLDQFKCCPAEEKVNYIEARSIET----NLDDVVDYPVLTFNRDQLGNISWSYAVFGQMERSFFSHVWKTLSHFEEQQISEQYREDIMFASQAYLVNQCLKVEYPQLRLALRSDLEEKIVRAGRTKRFNQKMTSSFQKEVGRLLVSTGIDWTKEYVVDGYSLDAVSVDQNVVLEIDGPTHFSRNTGVPLGHTVLKRRYITAAGWKLVSVSHNEWEELHGEFEQLDYLRKILEDHIG 666
RK LGF R+N + +S V ++ + D +++ D ++DWE EF+G+L+PLG PP K+K+ ++SKLL+DT+ MDWCVRARKVA+KSIE RGLTRK+EN++ + KKK KK ++NK+K + ++ D+ DDS+ ESEL+ ++ T+ D ++L VSMLAGGMF EK++ +M FVQRLSQFSGPSDRRKE+NLNR I+EAQTA+EVLEVT+E I+AVGKGLSPSPLSPLNIATALHRIAKNMEKVSMM THRLAFAR+REMSMLVG AM ALP+CS QG+SNI+WALSKIGGELLYLSEMDRVAEVALTKVGEFNSQNVAN+AGAFASMQHSAP+LF LSKRA+ IIHTF QE+AQ+LWAFASL EPVD +LESLD+VFKD QFKCC ++ V+ IE S+++ + D V+ PVL+FNR QLGNI+WS AVFGQM+R FFS++W+TLSHFEEQ+ISEQYREDIMFASQ +LVNQCL +EYP L+L+L S LEEKI RA +T+RFN K+TSSFQKEV RLLV+TG+DW +EYVVDGY+LDAV V++ V LEIDGPTHFSRNTG PLGHT+LKRRYITAAGWK+ S+SH EWEEL G EQLDYLR+IL+DH+G
Sbjct: 39 RKPKLGFPRRNCLNLGRDNHAVSSV-SLDDGDGDDDKGKDCNLDWELEFLGELEPLGIKPPMKKKKWQKSKLLEDTDGMDWCVRARKVALKSIEVRGLTRKMENLITGKKKKKKNKKKMVNKEKINIKVEEDVFDDSEDESELQ-------DMKTVDDVDDLMRQVSMLAGGMFEEKKKHSMGEFVQRLSQFSGPSDRRKEVNLNRAIIEAQTAEEVLEVTAETIVAVGKGLSPSPLSPLNIATALHRIAKNMEKVSMMETHRLAFARRREMSMLVGIAMTALPECSAQGISNISWALSKIGGELLYLSEMDRVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSELSKRAADIIHTFHEQELAQVLWAFASLYEPVDILLESLDSVFKDSSQFKCCLSKRTVDGIEESSVDSSKDLDSDRVLRSPVLSFNRGQLGNIAWSCAVFGQMDRIFFSNIWRTLSHFEEQRISEQYREDIMFASQVHLVNQCLNLEYPHLQLSLTSALEEKISRARKTRRFNNKITSSFQKEVARLLVNTGLDWVREYVVDGYTLDAVLVEKKVALEIDGPTHFSRNTGAPLGHTMLKRRYITAAGWKIYSLSHLEWEELQGGSEQLDYLREILKDHLG 659
| Match Name | Stats | Description |
|---|---|---|
| A0A834YMD2 | E-Value: 0.000e+0, PID: 66.16 | (Uncharacterized protein {ECO:0000313|EMBL:KAF8391... [more] |
| F6HAZ3 | E-Value: 0.000e+0, PID: 68.65 | RAP domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A7J0E4L4 | E-Value: 0.000e+0, PID: 65.44 | (Similar to RAP {ECO:0000313|EMBL:GFY81222.1})[more] |
| A0A5B7C0R0 | E-Value: 0.000e+0, PID: 66.77 | RAP domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A2R6S0H3 | E-Value: 0.000e+0, PID: 70.26 | RAP domain-containing protein {ECO:0000259|PROSITE... [more] |
| A5B1L8 | E-Value: 0.000e+0, PID: 66.57 | RAP domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A6I9SPJ9 | E-Value: 0.000e+0, PID: 67.67 | (RAP domain-containing protein, chloroplastic {ECO... [more] |
| A0A5E4FCJ8 | E-Value: 0.000e+0, PID: 68.25 | (Full=PREDICTED: RAP {ECO:0000313|EMBL:VVA25675.1}... [more] |
| A0A0G4APR9 | E-Value: 0.000e+0, PID: 67.03 | (AT2G31890-like protein {ECO:0000313|EMBL:AKM76706... [more] |
| A0A2I4G622 | E-Value: 0.000e+0, PID: 68.20 | (RAP domain-containing protein, chloroplastic {ECO... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |