Resource Type:
Polypeptide
Name:
XM_017367624.1
Identifier:
XM_017367624.1-protein
Sequence:
MASEDRAEASDPSLSRNLSSSRLNAKAAEFVPRSAEFVYHKAPGSGYFPA
QAHVRGNQRGFTQQYVPVVQYHQPQQAPQPLVQAVSAKKSAGDGTKTEIT
DEATQKLINQVEYYFSDVNLATTDHLMRFINKDPDGYVPLSVVFSFKKIK
AFVSSTTQLAGILRNSTKLVVSEDGKKVRRLLPLTDSDMEELQSRIVIAE
NLPEDHCHQNLMKIFSAVGSVKSIRTCQPQPSNGGSSSGSKVAKADGVNY
YSSKLHAFVEYESVELAEQAVTELNEEGTWRNGLKVRLLNKPAATSAHVR
GKKVGQGGELQRKEADTSTREEDPNEKHIEDPSQMYDGQSAQVNEQKGEE
HASEKEGGRGKGRGRGRGKGRGRPQHHNHNQNHRGNHVGGSSSVHPVNSE
HPTVFKPPPGPRMPDGTRGFSMGRGKPVVV
Sequence Length:
430
Sequence Checksum:
1325c6817cbf658f9d9cbb2dfe410f43
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017367624.1, derives from mRNA, XM_017367624.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017367624.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017367624.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P5YVP0 ((la-related protein 6B-like isoform X1 {ECO:0000313|RefSeq:XP_022744623.1}))
HSP 1 Score: 455.292 bits (1170), Expect = 1.020e-155
Identity = 252/462 (54.55%), Postives = 309/462 (66.88%), Query Frame = 0
Match: A0A6P5YVP0 ((la-related protein 6B-like isoform X1 {ECO:0000313|RefSeq:XP_022744623.1}))
HSP 1 Score: 455.292 bits (1170), Expect = 1.020e-155
Identity = 252/462 (54.55%), Postives = 309/462 (66.88%), Query Frame = 0
Query: 11 DPSLSRNLSSSRLNAKAAEFVP-RSAEFVYHKAPGSGYFPAQAHVRGNQRGFTQQYVPVVQYHQPQQAPQPL--------------------------------VQAV-------SAKKSAGDGTKTEITDEATQKLINQVEYYFSDVNLATTDHLMRFINKDPDGYVPLSVVFSFKKIKAFVSSTTQLAGILRNSTKLVVSEDGKKVRRLLPLTDSDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKSIRTCQPQPSNGGSSSGSKVAKADGVNYYSSKLHAFVEYESVELAEQAVTELNEEGTWRNGLKVRLLNKPAATSAHVRGKKVGQGGELQRKEADTSTREEDPNEKHIEDPSQMYDGQSAQVNEQKGEEHASEKEGGRGKGRGRGRGKGRGRPQHHNHNQNHRGNHVGGS--SSVHPVNSEHPTVFKPPPGPRMPDGTRGFSMGRGKPVVV 430
DP LS NLSSSRLNA+A EFVP RS + G + + P +H P +P P+ ++AV K +K +++EAT K++NQVEYYFSD+NLATTDHLMRFINKDP+GYVPLSVV SFKKIKA +++ +QLA +L+NS KLVVSEDGKKVRR PLT++DMEELQSRIV+AENLPEDHCHQNLMKIFSAVGSVK+IRTCQPQPS G SS S+ AK+DG++ +S+KLHA+VEYESVELAE+AV ELN+EG WR GL+VRL+ + A+ AH RGKK G GE +E D ST E+ NEK EDPS++ D S +E GEEH+++KE G+ KGR RGR KGRGR +HN++ N RGNHV +S + V+ E +V K PGPRMPDGTRGF+MGRGKPV V
Sbjct: 20 DPHLSWNLSSSRLNAQAPEFVPTRSTPL--QQQQNHRMMIPPPPPPGMLQVYPPLPPPPTAFHLPVHSPVPMPRHMVPVHHHVPMRNHHHPYQNHHHHHHREQEIEAVVRKDQQKEHKDHGATSSKNVLSEEATLKILNQVEYYFSDLNLATTDHLMRFINKDPEGYVPLSVVASFKKIKALITTHSQLASVLQNSLKLVVSEDGKKVRRQHPLTEADMEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCQPQPSGSGVSSASRSAKSDGLS-FSNKLHAYVEYESVELAEKAVAELNDEGNWRIGLRVRLMLRRASKPAHARGKK-GHDGEGHYEEDDASTSEQQSNEKQQEDPSRLSDIHS---HEYPGEEHSNDKECGQKKGRNRGRCKGRGRVHYHNNHHNSRGNHVSTPPLASSNLVSDEQASVAKQAPGPRMPDGTRGFAMGRGKPVSV 474
BLAST of XM_017367624.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A067K088 ((Uncharacterized protein {ECO:0000313|EMBL:KDP29552.1}))
HSP 1 Score: 443.736 bits (1140), Expect = 2.151e-150
Identity = 224/333 (67.27%), Postives = 268/333 (80.48%), Query Frame = 0
Match: A0A067K088 ((Uncharacterized protein {ECO:0000313|EMBL:KDP29552.1}))
HSP 1 Score: 443.736 bits (1140), Expect = 2.151e-150
Identity = 224/333 (67.27%), Postives = 268/333 (80.48%), Query Frame = 0
Query: 99 ITDEATQKLINQVEYYFSDVNLATTDHLMRFINKDPDGYVPLSVVFSFKKIKAFVSSTTQLAGILRNSTKLVVSEDGKKVRRLLPLTDSDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKSIRTCQPQPSNGGSSSGSKVAKADGVNYYSSKLHAFVEYESVELAEQAVTELNEEGTWRNGLKVRLLNKPAATSAHVRGKKVGQGGELQRKEADTSTREEDPNEKHIEDPSQMYDGQSAQVNEQKGEEHASEKEGGRGKGRGRG-RGKGRGRPQHHNHNQNHRGNHVGGSSSVHPVNSEHPTVFKPPPGPRMPDGTRGFSMGRGKPVVV 430
++DEA QKL+NQVEYYFSD+NLATTDHLMRFINKDP+GYVP+SVV SFKKIKA +++ +QLA ILRNS+KLVVSEDGKKVRRL PLT+SD+EELQSRIV+AENLPEDHCH NLMKIFS+VGSVK+IRTC PQ S GG+SS S+ KADG+ ++S+KLHAFVEYESVE+AE+AV ELN+E +WR+GL+VRL+ K + RGKK G G +E + ST E+ PNEK E P Q +D S +EQ GE+HA++KEG KGR +G R KGRGR QHH+ N+RGNHVG S +PV SE PTV K PPGPRMPDGTRGF+MGRGKP+ V
Sbjct: 199 LSDEAVQKLLNQVEYYFSDLNLATTDHLMRFINKDPEGYVPISVVASFKKIKAAINNNSQLASILRNSSKLVVSEDGKKVRRLHPLTESDVEELQSRIVVAENLPEDHCHHNLMKIFSSVGSVKTIRTCPPQTSGGGASSASRSTKADGM-HFSNKLHAFVEYESVEIAEKAVIELNDEESWRSGLRVRLMLKRTSKHTQARGKK-GHDGSGHSEEDEASTSEQQPNEKQHESPPQHHDVHS---HEQSGEDHANDKEGAHRKGRNKGHRNKGRGRGQHHH---NNRGNHVGTPPSNNPVMSELPTVAKQPPGPRMPDGTRGFAMGRGKPLAV 523
BLAST of XM_017367624.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A3AHR8 ((Chloroplast outer envelope protein 37 isoform 1 {ECO:0000313|EMBL:KAE8704130.1}))
HSP 1 Score: 438.728 bits (1127), Expect = 3.435e-149
Identity = 220/331 (66.47%), Postives = 266/331 (80.36%), Query Frame = 0
Match: A0A6A3AHR8 ((Chloroplast outer envelope protein 37 isoform 1 {ECO:0000313|EMBL:KAE8704130.1}))
HSP 1 Score: 438.728 bits (1127), Expect = 3.435e-149
Identity = 220/331 (66.47%), Postives = 266/331 (80.36%), Query Frame = 0
Query: 100 TDEATQKLINQVEYYFSDVNLATTDHLMRFINKDPDGYVPLSVVFSFKKIKAFVSSTTQLAGILRNSTKLVVSEDGKKVRRLLPLTDSDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKSIRTCQPQPSNGGSSSGSKVAKADGVNYYSSKLHAFVEYESVELAEQAVTELNEEGTWRNGLKVRLLNKPAATSAHVRGKKVGQGGELQRKEADTSTREEDPNEKHIEDPSQMYDGQSAQVNEQKGEEHASEKEGGRGKGRGRGRGKGRGRPQHHNHNQNHRGNHVGGSSSVHPVNSEHPTVFKPPPGPRMPDGTRGFSMGRGKPVVV 430
++EA K++NQVEYYFSD+NLATTDHLMRFINKDP+GY P+SV SFKKIKA V++ +QLA +LRNS+KLVVSEDGKKVRRLLPLT+SDMEELQSRI++AENLPEDHCHQNLMKIFSAVGSVK+IRTCQPQPS GG S S+ AK+DG+ ++S+KLHAFVEYESVELAE+AV ELN+EG WR+GL+VRL+ + A H R KK G G+ Q +E + S E N+K EDPSQ++D S + GEEH ++KEGG+ KGR RG GKGRGR Q+H ++ N GN VG +S + V++E PTV K PGPRMPDGTRGF+MGRGKPV V
Sbjct: 145 SEEAALKILNQVEYYFSDLNLATTDHLMRFINKDPEGYAPISVAASFKKIKALVTTHSQLATVLRNSSKLVVSEDGKKVRRLLPLTESDMEELQSRIIVAENLPEDHCHQNLMKIFSAVGSVKTIRTCQPQPSGGGLSPASRSAKSDGM-HFSNKLHAFVEYESVELAEKAVVELNDEGNWRSGLRVRLMLQNALQPVHARAKK-GHNGKGQCEEYEVSNTEMHSNKKQ-EDPSQLFDIHS---HGNPGEEHPNDKEGGQKKGRNRGWGKGRGRTQYHINHHNSHGNQVGSPASSNWVSNEQPTVAKQTPGPRMPDGTRGFAMGRGKPVAV 469
BLAST of XM_017367624.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A061EPK5 ((RNA-binding protein, putative isoform 2 {ECO:0000313|EMBL:EOY06990.1}))
HSP 1 Score: 434.106 bits (1115), Expect = 6.398e-148
Identity = 230/345 (66.67%), Postives = 277/345 (80.29%), Query Frame = 0
Match: A0A061EPK5 ((RNA-binding protein, putative isoform 2 {ECO:0000313|EMBL:EOY06990.1}))
HSP 1 Score: 434.106 bits (1115), Expect = 6.398e-148
Identity = 230/345 (66.67%), Postives = 277/345 (80.29%), Query Frame = 0
Query: 88 KKSAGDGTKTEITDEATQKLINQVEYYFSDVNLATTDHLMRFINKDPDGYVPLSVVFSFKKIKAFVSSTTQLAGILRNSTKLVVSEDGKKVRRLLPLTDSDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKSIRTCQPQPSNGGSSSGSKVAKADGVNYYSSKLHAFVEYESVELAEQAVTELNEEGTWRNGLKVRLLNKPAATSAHVRGKKVGQGGELQRKEADTSTREEDPNEKHIEDPSQMYDGQSAQVNEQKGEEHASEKEGGRGKGRGRGRGKGRGRPQHHNHNQNHRGNHVGG--SSSVHPVNSEHPTVFKPPPGPRMPDGTRGFSMGRGKPVVV 430
K +K +++EAT K++NQVEYYFSD+NLATTDHLMRFINKDP+GYVP+SVV SFKKIKA +++ QLA +LRNS KLVVSEDGKKVRR PLT+SDMEELQSRI++AENLPEDHCHQNLMKIFS+VGSVK+IRTCQPQPS GG SS S+ AK+DG+ ++S+KLHAFVEYESVELAE+AV ELN+EG WR+GL+VRL+ + + H RGKK G GE +E D ST E+ N+K EDPSQ+ D S +E GEEH++EKEGG+ KGR RGRGKGRGR Q+HN+ N RGNHVG S++ + V++E TV K PPGPRMPDGTRGF+MGRGKPV V
Sbjct: 89 KDHGASCSKNGLSEEATLKILNQVEYYFSDLNLATTDHLMRFINKDPEGYVPISVVASFKKIKALITTHAQLATVLRNSLKLVVSEDGKKVRRQHPLTESDMEELQSRIIVAENLPEDHCHQNLMKIFSSVGSVKTIRTCQPQPSGGGVSSASRTAKSDGM-HFSNKLHAFVEYESVELAEKAVAELNDEGNWRSGLRVRLMLRRVSKPTHTRGKK-GHDGEGHYEEDDASTSEQQSNDKQQEDPSQLSDIHS---HEYPGEEHSNEKEGGQKKGRNRGRGKGRGRAQYHNNQHNSRGNHVGTPPSATSNLVSNEQATVAKQPPGPRMPDGTRGFAMGRGKPVAV 428
BLAST of XM_017367624.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A061EXJ3 ((RNA-binding protein, putative isoform 1 {ECO:0000313|EMBL:EOY06989.1}))
HSP 1 Score: 434.491 bits (1116), Expect = 4.510e-147
Identity = 230/345 (66.67%), Postives = 277/345 (80.29%), Query Frame = 0
HSP 2 Score: 36.965 bits (84), Expect = 6.812e+0
Identity = 17/19 (89.47%), Postives = 18/19 (94.74%), Query Frame = 0
Match: A0A061EXJ3 ((RNA-binding protein, putative isoform 1 {ECO:0000313|EMBL:EOY06989.1}))
HSP 1 Score: 434.491 bits (1116), Expect = 4.510e-147
Identity = 230/345 (66.67%), Postives = 277/345 (80.29%), Query Frame = 0
Query: 88 KKSAGDGTKTEITDEATQKLINQVEYYFSDVNLATTDHLMRFINKDPDGYVPLSVVFSFKKIKAFVSSTTQLAGILRNSTKLVVSEDGKKVRRLLPLTDSDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKSIRTCQPQPSNGGSSSGSKVAKADGVNYYSSKLHAFVEYESVELAEQAVTELNEEGTWRNGLKVRLLNKPAATSAHVRGKKVGQGGELQRKEADTSTREEDPNEKHIEDPSQMYDGQSAQVNEQKGEEHASEKEGGRGKGRGRGRGKGRGRPQHHNHNQNHRGNHVGG--SSSVHPVNSEHPTVFKPPPGPRMPDGTRGFSMGRGKPVVV 430
K +K +++EAT K++NQVEYYFSD+NLATTDHLMRFINKDP+GYVP+SVV SFKKIKA +++ QLA +LRNS KLVVSEDGKKVRR PLT+SDMEELQSRI++AENLPEDHCHQNLMKIFS+VGSVK+IRTCQPQPS GG SS S+ AK+DG+ ++S+KLHAFVEYESVELAE+AV ELN+EG WR+GL+VRL+ + + H RGKK G GE +E D ST E+ N+K EDPSQ+ D S +E GEEH++EKEGG+ KGR RGRGKGRGR Q+HN+ N RGNHVG S++ + V++E TV K PPGPRMPDGTRGF+MGRGKPV V
Sbjct: 158 KDHGASCSKNGLSEEATLKILNQVEYYFSDLNLATTDHLMRFINKDPEGYVPISVVASFKKIKALITTHAQLATVLRNSLKLVVSEDGKKVRRQHPLTESDMEELQSRIIVAENLPEDHCHQNLMKIFSSVGSVKTIRTCQPQPSGGGVSSASRTAKSDGM-HFSNKLHAFVEYESVELAEKAVAELNDEGNWRSGLRVRLMLRRVSKPTHTRGKK-GHDGEGHYEEDDASTSEQQSNDKQQEDPSQLSDIHS---HEYPGEEHSNEKEGGQKKGRNRGRGKGRGRAQYHNNQHNSRGNHVGTPPSATSNLVSNEQATVAKQPPGPRMPDGTRGFAMGRGKPVAV 497
HSP 2 Score: 36.965 bits (84), Expect = 6.812e+0
Identity = 17/19 (89.47%), Postives = 18/19 (94.74%), Query Frame = 0
Query: 14 LSRNLSSSRLNAKAAEFVP 32
LSRNLSSSRLNA+A EFVP
Sbjct: 21 LSRNLSSSRLNAQAPEFVP 39
BLAST of XM_017367624.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZD80 ((Putative Lupus La protein {ECO:0000313|EMBL:MPA41974.1}) (Fragment))
HSP 1 Score: 432.18 bits (1110), Expect = 8.634e-147
Identity = 271/468 (57.91%), Postives = 324/468 (69.23%), Query Frame = 0
Match: A0A5B6ZD80 ((Putative Lupus La protein {ECO:0000313|EMBL:MPA41974.1}) (Fragment))
HSP 1 Score: 432.18 bits (1110), Expect = 8.634e-147
Identity = 271/468 (57.91%), Postives = 324/468 (69.23%), Query Frame = 0
Query: 10 SDPSLSRNLSSSRLNAKAAEFVPRSA------------EFVYHKAPGSG------------YFPAQAHVRGNQRGFTQQYVPV-------------------VQYHQPQQAPQPLVQAVSAKKSAGDGTKTEITDEATQKLINQVEYYFSDVNLATTDHLMRFINKDPDGYVPLSVVFSFKKIKAFVSSTTQLAGILRNSTKLVVSEDGKKVRRLLPLTDSDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKSIRTCQPQPSNGGSSSGSKVAKADGVNYYSSKLHAFVEYESVELAEQAVTELNEEGTWRNGLKVRLLNKPAATSAHVRGKKV---GQGGELQRKEADTSTRE-EDPNEKHIEDPSQMYDGQSAQVNEQKGEEHASEKEGGRGKGRGRGRGKGRGRPQHHNHNQNHRGNHVGGSSSVHPVNSEHPTVFKPPPGPRMPDGTRGFSMGRGKPVVV 430
SDPSLSRN+S SRLNA+AAEFVPRS+ V +AP G + P Q+HV Q + P V + Q+ P Q + G++ + +EATQK++NQVEYYFSDVNLATTDHLMRFINKDP+GYVP++VV +FKKIKA +SS +QLA ILRNS KLVVSEDGKKVRR PLT+SDMEELQSRIVIAENLPEDHCHQNLMKIFSA+GSVK+IRTCQPQ SNGG+SS S+ AKAD + YS+KLHAFVEYES+E AE+AV ELN EG WR+GL+VRL + A SA VR KKV G+G E +E DTST + + P+EK++ED SQ D QS +E GE+ A++KEGG+ KGR RGRGKGRGR Q+H+ N+RG+HVG S + VN+E P V K PPGPRMPDGTRGFSMGRGKP+VV
Sbjct: 1 SDPSLSRNVSFSRLNAQAAEFVPRSSSSSSSSSTMPQPRLVIPQAPPPGLVHVYPAPNSPFHVPIQSHVAVPSHVTVQNHHPHPHHVQVQYHHHHHRQYYGGVGFGDHQEVAAPAQQQAPVEPDHVSGSRNGLFEEATQKILNQVEYYFSDVNLATTDHLMRFINKDPEGYVPITVVAAFKKIKALISSNSQLATILRNSAKLVVSEDGKKVRRQHPLTESDMEELQSRIVIAENLPEDHCHQNLMKIFSAIGSVKTIRTCQPQASNGGASSASRSAKADSM-LYSNKLHAFVEYESIEFAEKAVAELNNEGNWRSGLRVRLFLRRTAKSAQVRTKKVGHEGEGREANYEEDDTSTSDTQQPSEKNLEDFSQQSDAQS---HEHTGEDLANDKEGGQRKGRSRGRGKGRGRAQYHH---NNRGSHVGTPPSNNSVNTEQPIVAKQPPGPRMPDGTRGFSMGRGKPIVV 461
BLAST of XM_017367624.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A699I468 ((La-related protein 6B {ECO:0000313|EMBL:GEZ15811.1}))
HSP 1 Score: 429.098 bits (1102), Expect = 7.461e-146
Identity = 258/431 (59.86%), Postives = 308/431 (71.46%), Query Frame = 0
Match: A0A699I468 ((La-related protein 6B {ECO:0000313|EMBL:GEZ15811.1}))
HSP 1 Score: 429.098 bits (1102), Expect = 7.461e-146
Identity = 258/431 (59.86%), Postives = 308/431 (71.46%), Query Frame = 0
Query: 12 PSLSRNLSSSRLNAKAAEFVPRSAEFVY---HKAPGSGYFPAQAHVRGNQRGFTQQYVPVVQYHQPQQAPQPLVQAVSAKKSAGDGTKTEITDEATQKLINQVEYYFSDVNLATTDHLMRFINKDPDGYVPLSVVFSFKKIKAFVSSTTQLAGILRNSTKLVVSEDGKKVRRLLPLTDSDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKSIRTCQPQPSNGGSSSGSK-VAKADGVNYYSSKLHAFVEYESVELAEQAVTELNEEGTWRNGLKVRLLNKPAATSAHVRGK--KVGQGGELQRKEADTSTREE-DPNEKHIEDPSQMYDGQSAQVNEQKGEEHASEKEGGRGKGRGRGRGKGRGRPQH-----HNHNQNHRGNHVGGSSSVHPVNSEHPTVFKPPPGPRMPDGTRGFSMGRGKPVVV 430
PSL+R+LS +LNAKA EFVPR+A P P HV Q G +V +P V + K A K DE+TQK+INQVEYYFSD+NLATTDHLMRFI+KDP+GYVP+SVV SFKKIKA VS QLA ILRNS KLVVSEDGKKV+R PLT++DMEELQSRI++AENLPEDHCHQNLMKIFSAVGSVK+IRTCQPQ SNGG++S S+ +KAD + ++S+KLHAFVEYE++ELAE+A ELN+EG WRN LKVRLL +P A A RGK K GQ E KE DTST E+ PNEKH++D Q + QS + +GE+H++EKEGG+ KGR RGRGKGRGRPQ+ H +N N+RG H+ S + VN+EHP + K PPGPRMPDGTRGFSMGRGKP+ V
Sbjct: 26 PSLTRSLS--KLNAKAPEFVPRAAPAAVVSPPPQPPPQNTPGIIHVMIRQXGGGTGFV------------EPNVAVSAEAKEASLSVK----DESTQKIINQVEYYFSDINLATTDHLMRFISKDPEGYVPISVVVSFKKIKALVSGHAQLATILRNSGKLVVSEDGKKVKRQHPLTEADMEELQSRIIVAENLPEDHCHQNLMKIFSAVGSVKTIRTCQPQASNGGATSASRGASKADAM-HFSNKLHAFVEYETIELAEKAALELNKEGNWRNSLKVRLLRRP-AKPAQARGKKEKAGQEDEAVHKEDDTSTSEQHTPNEKHLDDTHQQSEVQSHE--HVQGEDHSNEKEGGQKKGRNRGRGKGRGRPQYSNHNNHYNNHNNRGAHLVTPPSSNSVNNEHPVIGKQPPGPRMPDGTRGFSMGRGKPISV 434
BLAST of XM_017367624.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A803M5I5 (HTH La-type RNA-binding domain-containing protein {ECO:0000259|PROSITE:PS50961})
HSP 1 Score: 427.172 bits (1097), Expect = 2.615e-145
Identity = 224/333 (67.27%), Postives = 268/333 (80.48%), Query Frame = 0
Match: A0A803M5I5 (HTH La-type RNA-binding domain-containing protein {ECO:0000259|PROSITE:PS50961})
HSP 1 Score: 427.172 bits (1097), Expect = 2.615e-145
Identity = 224/333 (67.27%), Postives = 268/333 (80.48%), Query Frame = 0
Query: 99 ITDEATQKLINQVEYYFSDVNLATTDHLMRFINKDPDGYVPLSVVFSFKKIKAFVSSTTQLAGILRNSTKLVVSEDGKKVRRLLPLTDSDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKSIRTCQPQPSNGGSSSGSKVAKADGVNYYSSKLHAFVEYESVELAEQAVTELNEEGTWRNGLKVRLLNKPAATSAHVRGKKVGQGGELQRKEADTSTREEDPNEKHIEDPSQMYDGQSAQVNEQKGEEHASEKEGGRGKGRGRGRGKGRGRPQHHNHNQNHRGNHVGGSSSVHPVNSEHPTVFK-PPPGPRMPDGTRGFSMGRGKPVVV 430
++DE TQKLINQVEYYFSDVNLATTDHL+RFINKDP+G+VP+SVV SFKKIKA +SS +QLA +LR+STKLVVSEDGKKV+RL PLT SDMEELQ+RI++AENLPEDHCHQ LMK+FSAVGSVKSIRTCQPQPSN G+SS S+ +K D + Y +KLHAFVEYE+VELAE+A+ ELN+EG WRNGL+VR L KP + +A RGKK G GE+ +E D ST E++ NEK E+ S G S + ++ EE EKEGG+ K R RGRGKGRGR HHNH+QN+RG+HVG + +N+EHP V K PPGPRMPDGTRGFSMGRG+P+ V
Sbjct: 99 LSDENTQKLINQVEYYFSDVNLATTDHLIRFINKDPEGFVPISVVASFKKIKALISSNSQLAALLRSSTKLVVSEDGKKVKRLHPLTGSDMEELQARIIVAENLPEDHCHQKLMKVFSAVGSVKSIRTCQPQPSNNGASSASRPSKTDNM-LYCNKLHAFVEYETVELAEKAIVELNDEGNWRNGLRVRSLLKPGSKNAQARGKKTGNEGEVTCEEEDVSTSEQNQNEKQSENLS----GHSDVHSHEQAEEPILEKEGGQKKSRNRGRGKGRGR-GHHNHHQNNRGHHVGSPPVNNVMNAEHPIVAKQQPPGPRMPDGTRGFSMGRGRPIAV 425
BLAST of XM_017367624.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A061EQ58 ((RNA-binding protein, putative isoform 3 {ECO:0000313|EMBL:EOY06991.1}))
HSP 1 Score: 429.869 bits (1104), Expect = 2.911e-145
Identity = 230/346 (66.47%), Postives = 277/346 (80.06%), Query Frame = 0
HSP 2 Score: 36.965 bits (84), Expect = 6.816e+0
Identity = 17/19 (89.47%), Postives = 18/19 (94.74%), Query Frame = 0
Match: A0A061EQ58 ((RNA-binding protein, putative isoform 3 {ECO:0000313|EMBL:EOY06991.1}))
HSP 1 Score: 429.869 bits (1104), Expect = 2.911e-145
Identity = 230/346 (66.47%), Postives = 277/346 (80.06%), Query Frame = 0
Query: 88 KKSAGDGTKTEITDEATQKLINQVEYYFSDVNLATTDHLMRFINKDPDGYVPLSVVFSFKKIKAFVSSTTQLAGILRNSTKLVVSEDGKKVRRLLPLTDSDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKSIRTCQPQPSNGGSSSGSKVAKADGVNYYSSKLHAFVEYESVELAEQAVT-ELNEEGTWRNGLKVRLLNKPAATSAHVRGKKVGQGGELQRKEADTSTREEDPNEKHIEDPSQMYDGQSAQVNEQKGEEHASEKEGGRGKGRGRGRGKGRGRPQHHNHNQNHRGNHVGG--SSSVHPVNSEHPTVFKPPPGPRMPDGTRGFSMGRGKPVVV 430
K +K +++EAT K++NQVEYYFSD+NLATTDHLMRFINKDP+GYVP+SVV SFKKIKA +++ QLA +LRNS KLVVSEDGKKVRR PLT+SDMEELQSRI++AENLPEDHCHQNLMKIFS+VGSVK+IRTCQPQPS GG SS S+ AK+DG+ ++S+KLHAFVEYESVELAE+AV ELN+EG WR+GL+VRL+ + + H RGKK G GE +E D ST E+ N+K EDPSQ+ D S +E GEEH++EKEGG+ KGR RGRGKGRGR Q+HN+ N RGNHVG S++ + V++E TV K PPGPRMPDGTRGF+MGRGKPV V
Sbjct: 158 KDHGASCSKNGLSEEATLKILNQVEYYFSDLNLATTDHLMRFINKDPEGYVPISVVASFKKIKALITTHAQLATVLRNSLKLVVSEDGKKVRRQHPLTESDMEELQSRIIVAENLPEDHCHQNLMKIFSSVGSVKTIRTCQPQPSGGGVSSASRTAKSDGM-HFSNKLHAFVEYESVELAEKAVVAELNDEGNWRSGLRVRLMLRRVSKPTHTRGKK-GHDGEGHYEEDDASTSEQQSNDKQQEDPSQLSDIHS---HEYPGEEHSNEKEGGQKKGRNRGRGKGRGRAQYHNNQHNSRGNHVGTPPSATSNLVSNEQATVAKQPPGPRMPDGTRGFAMGRGKPVAV 498
HSP 2 Score: 36.965 bits (84), Expect = 6.816e+0
Identity = 17/19 (89.47%), Postives = 18/19 (94.74%), Query Frame = 0
Query: 14 LSRNLSSSRLNAKAAEFVP 32
LSRNLSSSRLNA+A EFVP
Sbjct: 21 LSRNLSSSRLNAQAPEFVP 39
BLAST of XM_017367624.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5ACK2 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8527217.1}))
HSP 1 Score: 429.098 bits (1102), Expect = 3.860e-145
Identity = 263/459 (57.30%), Postives = 316/459 (68.85%), Query Frame = 0
Match: A0A5J5ACK2 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8527217.1}))
HSP 1 Score: 429.098 bits (1102), Expect = 3.860e-145
Identity = 263/459 (57.30%), Postives = 316/459 (68.85%), Query Frame = 0
Query: 14 LSRNLSSSRLNAKAAEFVPRSAE---------FVYHKAPGSGY---FPAQA---HVRGNQRGFTQQYVPV-----------VQYHQP------------QQAPQPLVQAVSAKKSAGDGTKTEITDEATQKLINQVEYYFSDVNLATTDHLMRFINKDPDGYVPLSVVFSFKKIKAFVSSTTQLAGILRNSTKLVVSEDGKKVRRLLPLTDSDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKSIRTCQPQPSNGGSSSGSKVAKADGVNYYSSKLHAFVEYESVELAEQAVTELNEEGTWRNGLKVRLLNKPAATSAHVRGKKV---GQGGELQRKEADTSTRE-EDPNEKHIEDPSQMYDGQSAQVNEQKGEEHASEKEGGRGKGRGRGRGKGRGRPQHHNHNQNHRGNHVGGSSSVHPVNSEHPTVFKPPPGPRMPDGTRGFSMGRGKPVVV 430
LSRN+S SRLNA+A EFVPRS+ FV +AP G +PA HV +VPV VQYH Q+ Q + G++ +++EATQK++NQVEYYFSDVNLATTDHLMRFINKDP+GYVP++VV SFKKIKA SS +QLA ILRNS KLVVSEDGKKVRR PLT+SDMEELQSRIV+AENLPEDHCHQNLMKIFSA+GSVK+IRTCQPQ NGG+SS S++AK D + Y++KLHAFVEYES+ELA++AV ELN EG WR+GL+VRL + SA VR KKV G+G E +E DTST + + P+EK++ D SQ D QS +E GE+ ++KEGG+ KGR RGRGKGRGR Q+H+ N+RG++VG S VN+E P V K PPGPRMPDGTRGFSMGRGKPV V
Sbjct: 41 LSRNVSFSRLNAQAPEFVPRSSSASSTMPQPRFVIPQAPPPGLVHVYPAPNSPFHVPIQSHMAVPSHVPVQNHHPHPHHVPVQYHDHHRYYGGVGFGDHQEVASSAQQKAPVEPDHVSGSRNGLSEEATQKILNQVEYYFSDVNLATTDHLMRFINKDPEGYVPITVVASFKKIKALTSSNSQLATILRNSAKLVVSEDGKKVRRQYPLTESDMEELQSRIVVAENLPEDHCHQNLMKIFSAIGSVKTIRTCQPQAPNGGASSASRLAKVDSM-LYNNKLHAFVEYESIELAKKAVAELNNEGNWRSGLRVRLFLRRTEKSAQVRAKKVGHEGEGREAIHEEDDTSTSDPQQPSEKNL-DFSQQSDAQS---HEHTGEDLVNDKEGGQRKGRSRGRGKGRGRAQYHH---NNRGSNVGTPPSNISVNTEQPIVAKQPPGPRMPDGTRGFSMGRGKPVAV 491
| Match Name | Stats | Description |
|---|---|---|
| A0A6P5YVP0 | E-Value: 1.020e-155, PID: 54.55 | (la-related protein 6B-like isoform X1 {ECO:000031... [more] |
| A0A067K088 | E-Value: 2.151e-150, PID: 67.27 | (Uncharacterized protein {ECO:0000313|EMBL:KDP2955... [more] |
| A0A6A3AHR8 | E-Value: 3.435e-149, PID: 66.47 | (Chloroplast outer envelope protein 37 isoform 1 {... [more] |
| A0A061EPK5 | E-Value: 6.398e-148, PID: 66.67 | (RNA-binding protein, putative isoform 2 {ECO:0000... [more] |
| A0A061EXJ3 | E-Value: 4.510e-147, PID: 66.67 | (RNA-binding protein, putative isoform 1 {ECO:0000... [more] |
| A0A5B6ZD80 | E-Value: 8.634e-147, PID: 57.91 | (Putative Lupus La protein {ECO:0000313|EMBL:MPA41... [more] |
| A0A699I468 | E-Value: 7.461e-146, PID: 59.86 | (La-related protein 6B {ECO:0000313|EMBL:GEZ15811.... [more] |
| A0A803M5I5 | E-Value: 2.615e-145, PID: 67.27 | HTH La-type RNA-binding domain-containing protein ... [more] |
| A0A061EQ58 | E-Value: 2.911e-145, PID: 66.47 | (RNA-binding protein, putative isoform 3 {ECO:0000... [more] |
| A0A5J5ACK2 | E-Value: 3.860e-145, PID: 57.30 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8527... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |