Resource Type:
Polypeptide
Name:
XM_017367110.1
Identifier:
XM_017367110.1-protein
Sequence:
MAMNIIFNRSRPLILKTLKPIFSKPISTFPFLSQQPQPLSPDPPTPAPPS
QTSSATWTHPPGSTHSLVPLDFLQTHVVKLERIAESLDLESIKELFADWM
TLQKWHDMKKVFEHWSSCYDKNGKLNKPDVGLYNHYLRANLMLKASPSQL
LELVSGMESLGIHPNTASFNLILKTMYLYKEVDTAVQLLDRMIESEKETV
KDSEQDVVCRPDDESFDLVVGMLLHENRMEAAFKYIDLNLKSGHSMSSNV
FSECVFKFMASGSLDTLVSVIERCKKMDQNKALRPEWKLCLDMLDCAMKA
DNSELAYYALEFMAKWMIQDENMRPPRYLSVEEGLVVSLLATAGRTYSKK
LLDAAWTILKRSLRKKRVANAETYLARIHAHASLGTEHLKKAFGALHEFE
SLYGGADKQSAEDLFSPFTALYPLVVACSHNGFATLDSVYFQLENLSKAN
PPYKSIAALNCIILGCANIWDVHRASETFTAISTTFGLTPDVNSYNGLIC
AYGKLNKRKEALELFEQLKSLGIKPNAMTYALLVDAHLVAKDPKSALSII
DEMVISGYTPTKAILKKVRRRCIREMDYESNDQVEDLAKKFGIRMGTETR
RNLLFNLQYTADYVQER
Sequence Length:
617
Sequence Checksum:
a34a97434ff773d72099d2573bf8f5d9
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017367110.1, derives from mRNA, XM_017367110.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017367110.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017367110.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7CFI0 ((Uncharacterized protein {ECO:0000313|EMBL:MPA78936.1}) (Fragment))
HSP 1 Score: 737.258 bits (1902), Expect = 0.000e+0
Identity = 371/629 (58.98%), Postives = 465/629 (73.93%), Query Frame = 0
Match: A0A5B7CFI0 ((Uncharacterized protein {ECO:0000313|EMBL:MPA78936.1}) (Fragment))
HSP 1 Score: 737.258 bits (1902), Expect = 0.000e+0
Identity = 371/629 (58.98%), Postives = 465/629 (73.93%), Query Frame = 0
Query: 1 MAMNIIFNRSRPLILKTLKPIFSKPISTFPFLSQQPQPLSPDPPTPA-----------PPSQTSSATWTHP-PGST---HSLVPLDFL-QTHVVKLERIAESLDLESIKELFADWMTLQKWHDMKKVFEHWSSCYDKNGKLNKPDVGLYNHYLRANLMLKASPSQLLELVSGMESLGIHPNTASFNLILKTMYLYKEVDTAVQLLDRMIESEKETVKDSEQDVVCRPDDESFDLVVGMLLHENRMEAAFKYIDLNLKSGHSMSSNVFSECVFKFMASGSLDTLVSVIERCKKMDQNKALRPEWKLCLDMLDCAMKADNSELAYYALEFMAKWMIQDENMRPPRYLSVEEGLVVSLLATAGRTYSKKLLDAAWTILKRSLRKKRVANAETYLARIHAHASLGTEHLKKAFGALHEFESLYGGADKQSAEDLFSPFTALYPLVVACSHNGFATLDSVYFQLENLSKANPPYKSIAALNCIILGCANIWDVHRASETFTAISTTFGLTPDVNSYNGLICAYGKLNKRKEALELFEQLKSLGIKPNAMTYALLVDAHLVAKDPKSALSIIDEMVISGYTPTKAILKKVRRRCIREMDYESNDQVEDLAKKFGIRMGTETRRNLLFNLQYTADY 613
MA I RSR +K L K I+TF FLSQ+PQ P PA S + W +P P ST SL+PL F+ QT+ +++ ++++LD++S+ +FADWMT Q+W DMK++FE W DKNGK NKPDV +YNHYLRANLM S LL+LV+ ME I PNTASFNL+LK MY +E + A +LL+RM+++ KE++ PDDES+DLVVG+L ++++AA KYIDL+LKSG+ +S VF+ECV + G LD LVS+IERCKKMDQNKAL P W LC + + AM+ DNS+LAYYALEFMAKW+ + EN RPP LSV+EGLVVS L TA RTY+ KLLD AW ILKRSLR+K+ N E++LA+I HAS G +L+KAF LHEFE+ YG + ++ EDLFSPFT+LYPLVVACS NGF TLDSVY+QLENLS+A+PPYKS+AALNCIILGCANIWDV RA +TF AI +F LTPD++SYN L+ A+GKL K EA +FE L+S G+KPNAMTY+LLVDAHL+ +DPK+ALS+IDEMVI+G+ P+K ILKKVRRRCIREMDYES+D+VE LAK+F I+MGTETRR++LFNL YT DY
Sbjct: 16 MASMAILTRSR--FIKMLNHDSVKSITTFTFLSQEPQLAEAPAPLPAPPSAPLPPNPASGSPLYNENWRNPIPNSTALAQSLIPLGFINQTNSTRIQFLSQTLDVQSLMNVFADWMTSQRWADMKQLFEFWIRSLDKNGKPNKPDVNIYNHYLRANLMHGLSAGDLLDLVAQMEDYAITPNTASFNLVLKGMYQARETEAAQKLLERMLQTGKESL----------PDDESYDLVVGILFLRDQIDAALKYIDLSLKSGYMLSMKVFTECVESCVNKGRLDALVSIIERCKKMDQNKALSPNWNLCNYIAEVAMQEDNSDLAYYALEFMAKWIARGENARPPILLSVDEGLVVSALGTAARTYNSKLLDGAWAILKRSLRQKKAPNTESFLAKICTHASFG--NLQKAFSTLHEFETTYGNSTTEAEEDLFSPFTSLYPLVVACSKNGFGTLDSVYYQLENLSQADPPYKSVAALNCIILGCANIWDVDRAYQTFNAIGASFELTPDIHSYNSLMHAFGKLKKTFEASSVFEHLRSKGVKPNAMTYSLLVDAHLINRDPKAALSVIDEMVIAGFEPSKEILKKVRRRCIREMDYESDDRVESLAKEFKIKMGTETRRDILFNLGYTTDY 630
BLAST of XM_017367110.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5ASU2 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8532906.1}))
HSP 1 Score: 736.873 bits (1901), Expect = 0.000e+0
Identity = 373/631 (59.11%), Postives = 465/631 (73.69%), Query Frame = 0
Match: A0A5J5ASU2 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8532906.1}))
HSP 1 Score: 736.873 bits (1901), Expect = 0.000e+0
Identity = 373/631 (59.11%), Postives = 465/631 (73.69%), Query Frame = 0
Query: 1 MAMNIIFNRSRPLILKTLKPIFSKPISTFPFLSQQPQ------------PLSPDPPTPAPPSQTSSATWTHP----PGSTHSLVPLDFL-QTHVVKLERIAESLDLESIKELFADWMTLQKWHDMKKVFEHWSSCYDKNGKLNKPDVGLYNHYLRANLMLKASPSQLLELVSGMESLGIHPNTASFNLILKTMYLYKEVDTAVQLLDRMIESEKETVKDSEQDVVCRPDDESFDLVVGMLLHENRMEAAFKYIDLNLKSGHSMSSNVFSECVFKFMASGSLDTLVSVIERCKKMDQNKALRPEWKLCLDMLDCAMKADNSELAYYALEFMAKWMIQDENMRPPRYLSVEEGLVVSLLATAGRTYSKKLLDAAWTILKRSLRKKRVANAETYLARIHAHASLGTEHLKKAFGALHEFESLYGGADKQSAEDLFSPFTALYPLVVACSHNGFATLDSVYFQLENLSKANPPYKSIAALNCIILGCANIWDVHRASETFTAISTTFGLTPDVNSYNGLICAYGKLNKRKEALELFEQLKSLGIKPNAMTYALLVDAHLVAKDPKSALSIIDEMVISGYTPTKAILKKVRRRCIREMDYESNDQVEDLAKKFGIRMGTETRRNLLFNLQYTADYV 614
MA I RSR I KTL K I+TF FLSQ+PQ P +P PP PA S + W +P P SL+PL F+ Q+ +++ ++++LD++S+ +FADWMT Q+W DMK++FE W DKNGK NKPDV LYNHYLRANLM+ AS +LL+LV+ ME I PNTASFNL+LK MY +E + A +LL+RM+++ KE++ PDDES+DL+VGML +++++AA KYIDL LKSG+ +S VF+ECV + G LD LVS+IERCKKMDQNKAL P W LC + D AM+ DNS+LAYYALEFMAKW+ + EN RPP LS +EGLVVS L TA RTY+ KLLD AW ILKRSLR+K+ N E+YLA+I HASLG +L+KAF LHEFE+ YG + ++ EDLFSPFT+LYPLVVAC+ NGF TLDSVY+QLENLS+A+PPYKS+AALNCIILGCANIWDV RA +TF AI TTFGLTPD++SYN L+ A+GKL K EA +FE L S +KPNAMTY+LLVDAHL+ +D K+ALS+IDEMV +G+ P++ ILKKVRRRCIREMDYES+D+VE LAK+F IRMGTE RR++LFNL DY
Sbjct: 4 MASMAILTRSRSFI-KTLNHDSVKSITTFTFLSQEPQLAEAPAPTPPPPPSAPLPPNPASGSPLYNENWRNPNPSSPTLAQSLIPLGFIHQSPSSRIQSLSQTLDVQSLMNMFADWMTSQRWADMKQLFEFWIRSLDKNGKPNKPDVNLYNHYLRANLMIGASAGELLDLVAQMEDYAIAPNTASFNLVLKAMYQARETEAAQKLLERMLQTGKESL----------PDDESYDLIVGMLFLKDQIDAALKYIDLTLKSGYMLSMKVFTECVKSCVNKGRLDALVSIIERCKKMDQNKALSPNWNLCNYIADVAMQEDNSDLAYYALEFMAKWIARGENTRPPVLLSADEGLVVSALGTAARTYNSKLLDGAWAILKRSLRQKKAPNTESYLAKICTHASLG--NLQKAFSTLHEFETTYGNSTTEAEEDLFSPFTSLYPLVVACTKNGFVTLDSVYYQLENLSQADPPYKSVAALNCIILGCANIWDVDRAYQTFNAIGTTFGLTPDIHSYNSLMHAFGKLKKTFEASSVFEHLISKDVKPNAMTYSLLVDAHLINRDQKAALSVIDEMVNAGFEPSREILKKVRRRCIREMDYESDDRVESLAKEFKIRMGTENRRDMLFNLSRATDYA 621
BLAST of XM_017367110.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7ZUN0 ((pentatricopeptide repeat-containing protein At1g26460, mitochondrial {ECO:0000313|RefSeq:XP_010258096.1}))
HSP 1 Score: 731.095 bits (1886), Expect = 0.000e+0
Identity = 362/623 (58.11%), Postives = 464/623 (74.48%), Query Frame = 0
Match: A0A1U7ZUN0 ((pentatricopeptide repeat-containing protein At1g26460, mitochondrial {ECO:0000313|RefSeq:XP_010258096.1}))
HSP 1 Score: 731.095 bits (1886), Expect = 0.000e+0
Identity = 362/623 (58.11%), Postives = 464/623 (74.48%), Query Frame = 0
Query: 3 MNIIFNRSRPLILKTLKPIFSKPISTFPFLSQQPQPLSPDPP--TPAPPSQTSSA-----TWTHP---PGSTHSLVPLDFL-QTHVVKLERIAESLDLESIKELFADWMTLQKWHDMKKVFEHWSSCYDKNGKLNKPDVGLYNHYLRANLMLKASPSQLLELVSGMESLGIHPNTASFNLILKTMYLYKEVDTAVQLLDRMIESEKETVKDSEQDVVCRPDDESFDLVVGMLLHENRMEAAFKYIDLNLKSGHSMSSNVFSECVFKFMASGSLDTLVSVIERCKKMDQNKALRPEWKLCLDMLDCAMKADNSELAYYALEFMAKWMIQDENMRPPRYLSVEEGLVVSLLATAGRTYSKKLLDAAWTILKRSLRKKRVANAETYLARIHAHASLGTEHLKKAFGALHEFESLYGGADKQSAEDLFSPFTALYPLVVACSHNGFATLDSVYFQLENLSKANPPYKSIAALNCIILGCANIWDVHRASETFTAISTTFGLTPDVNSYNGLICAYGKLNKRKEALELFEQLKSLGIKPNAMTYALLVDAHLVAKDPKSALSIIDEMVISGYTPTKAILKKVRRRCIREMDYESNDQVEDLAKKFGIRMGTETRRNLLFNLQYTADYV 614
M ++F RSR + KTL P + ISTF FL Q+PQ P P TP PP+ +S + W +P P SLVPL FL QT K++ ++ +LD++S+ +FADWMT ++W DMK++FE W DKNGK N+PDV LYNHYLRANL A+ +LL+LV+ ME I PNTASFNL+LK MY KE + A +LL+RM+++ KE++ PD+E+++LV GML EN+++AA KYID+ LKSG+ +S VF+ECV +G LDTL S+IERCK MDQNKAL P W +C ++D AM+ADNS+LA+YALEF+AKW+ + EN RPP LSV+EG+VVS L TA RTY LLDA+W IL+RSLR+K+ N E+YL +I+AHASLG +L+KAF LHEFES YG + K + +DLFSPFT+L+PLVVAC+ NGF TLDSVYFQLENLS A+ PYKS+AALNCIILGCANIWD+ RA +TF AI + +GLTPD++SYN L+ A+GKL K EA +FE L SLG+KPNA +Y+LLVDAHL+ +D K+ALS+IDEMV +G+ P+K LKKVRRRC+RE DYES+DQVE LAKKF IRMGTE RR++LFNL+Y+ DY
Sbjct: 1 MAMLF-RSRTFV-KTLIPNSFRTISTFTFLCQEPQLAEPSIPDSTPLPPNPSSGSPMYQQNWRNPIQTPLPGQSLVPLGFLHQTPSAKIQSLSRTLDVQSLMNVFADWMTSRRWADMKQLFEFWIKSLDKNGKPNRPDVNLYNHYLRANLENGATAGELLDLVAQMEDYMITPNTASFNLVLKAMYQAKETEAAEKLLERMLQTGKESL----------PDEETYELVTGMLFSENQIDAALKYIDMTLKSGYMVSMRVFTECVRSCGNAGRLDTLASIIERCKAMDQNKALCPSWNMCNYLVDVAMQADNSKLAFYALEFLAKWIARGENARPPVLLSVDEGVVVSALGTASRTYDATLLDASWAILRRSLRQKKAPNPESYLGKIYAHASLG--NLQKAFSTLHEFESAYGNSTKAADQDLFSPFTSLHPLVVACTKNGFETLDSVYFQLENLSHADLPYKSVAALNCIILGCANIWDIDRAYQTFEAIGSIYGLTPDIHSYNALMYAFGKLKKTFEASRVFEHLTSLGVKPNATSYSLLVDAHLINRDAKAALSVIDEMVNAGFVPSKETLKKVRRRCMREFDYESDDQVESLAKKFKIRMGTENRRDMLFNLEYSTDYT 609
BLAST of XM_017367110.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J1GHH4 ((pentatricopeptide repeat-containing protein At1g26460, mitochondrial {ECO:0000313|RefSeq:XP_022951387.1, ECO:0000313|RefSeq:XP_022951388.1}))
HSP 1 Score: 729.554 bits (1882), Expect = 0.000e+0
Identity = 359/623 (57.62%), Postives = 468/623 (75.12%), Query Frame = 0
Match: A0A6J1GHH4 ((pentatricopeptide repeat-containing protein At1g26460, mitochondrial {ECO:0000313|RefSeq:XP_022951387.1, ECO:0000313|RefSeq:XP_022951388.1}))
HSP 1 Score: 729.554 bits (1882), Expect = 0.000e+0
Identity = 359/623 (57.62%), Postives = 468/623 (75.12%), Query Frame = 0
Query: 6 IFNRSRPLILKT-LKPIFS-KPISTFPFLSQQPQ--------PLSPDPPTPAPPSQTSSATWTHP-PGS--THSLVPLDFL-QTHVVKLERIAESLDLESIKELFADWMTLQKWHDMKKVFEHWSSCYDKNGKLNKPDVGLYNHYLRANLMLKASPSQLLELVSGMESLGIHPNTASFNLILKTMYLYKEVDTAVQLLDRMIESEKETVKDSEQDVVCRPDDESFDLVVGMLLHENRMEAAFKYIDLNLKSGHSMSSNVFSECVFKFMASGSLDTLVSVIERCKKMDQNKALRPEWKLCLDMLDCAMKADNSELAYYALEFMAKWMIQDENMRPPRYLSVEEGLVVSLLATAGRTYSKKLLDAAWTILKRSLRKKRVANAETYLARIHAHASLGTEHLKKAFGALHEFESLYGGADKQSAEDLFSPFTALYPLVVACSHNGFATLDSVYFQLENLSKANPPYKSIAALNCIILGCANIWDVHRASETFTAISTTFGLTPDVNSYNGLICAYGKLNKRKEALELFEQLKSLGIKPNAMTYALLVDAHLVAKDPKSALSIIDEMVISGYTPTKAILKKVRRRCIREMDYESNDQVEDLAKKFGIRMGTETRRNLLFNLQYTADYV 614
I +R+ LI + L + S KPI+TF FLSQ+ Q P +P PP PA S + W +P P + T SL+PL FL Q+ +++ ++++LD++S+ +FADWM Q+W DMK++FE W DKNGK NKPDV LYN+YLRANLM+ A+ +LL+LV+ ME I PN+ASFNL+LK MY +E + A +L++RM+++ E++ PDDES+DLV+GMLL ++++AA KYIDL LKSGH +S VF+ECV + G LDTLVSVI+RCK QNKAL P W LC + + AM+ DNS+LAYYALEFMA+W+ + EN RPP +LSV+EG+VVS L TAGRTYS LLDAAW ILKRSLR+K+V N E+YL +I+A AS G +L++AF LHEFE Y +D +AE++FSPFT+LYPLVVACS GF TLD+VYFQLENLS+A+PPYKS+AALNC+ILGCANIWD+ RA +TF AIS++FGLTPD++SYN L+ A+GKL K EA +FE L SLG+KPNA +Y+LLVDAHL+ +DPKSALS+ID+MVI+G+ P+K +LKKVRRRCIREMDY+SND+V+ AK F IRMGTE RR++LFNL + +YV
Sbjct: 7 ILSRTHTLIRNSNLNNVCSFKPITTFTFLSQESQLANEPVDVPSTPLPPNPASGSPLYNENWRNPIPNASMTQSLIPLGFLNQSPSSRIQALSQTLDVQSLLNVFADWMASQRWDDMKQLFESWIRSLDKNGKPNKPDVNLYNNYLRANLMVNATAGELLDLVAQMEDYAISPNSASFNLVLKAMYQARETEAAEKLIERMLQTGGESM----------PDDESYDLVIGMLLSTDQIDAALKYIDLTLKSGHMLSLKVFTECVRSCVKKGRLDTLVSVIDRCKATVQNKALCPTWNLCNYIAEVAMQEDNSKLAYYALEFMARWIARGENARPPVHLSVDEGIVVSALGTAGRTYSSSLLDAAWAILKRSLRQKKVPNPESYLGKIYALASFG--NLQRAFTTLHEFEEAYRTSDDGAAEEMFSPFTSLYPLVVACSKKGFETLDTVYFQLENLSRADPPYKSVAALNCVILGCANIWDLDRAYQTFEAISSSFGLTPDIHSYNALMYAFGKLKKTFEAARVFEHLVSLGVKPNATSYSLLVDAHLINRDPKSALSVIDDMVIAGFAPSKQMLKKVRRRCIREMDYDSNDRVDYQAKSFKIRMGTENRRDMLFNLDFGTNYV 617
BLAST of XM_017367110.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J1BQT9 ((pentatricopeptide repeat-containing protein At1g26460, mitochondrial {ECO:0000313|RefSeq:XP_022131845.1}))
HSP 1 Score: 727.243 bits (1876), Expect = 0.000e+0
Identity = 352/605 (58.18%), Postives = 461/605 (76.20%), Query Frame = 0
Match: A0A6J1BQT9 ((pentatricopeptide repeat-containing protein At1g26460, mitochondrial {ECO:0000313|RefSeq:XP_022131845.1}))
HSP 1 Score: 727.243 bits (1876), Expect = 0.000e+0
Identity = 352/605 (58.18%), Postives = 461/605 (76.20%), Query Frame = 0
Query: 22 FSKPISTFPFLSQQPQ--------PLSPDPPTPAPPSQTSSATWTHP-PGS--THSLVPLDFL-QTHVVKLERIAESLDLESIKELFADWMTLQKWHDMKKVFEHWSSCYDKNGKLNKPDVGLYNHYLRANLMLKASPSQLLELVSGMESLGIHPNTASFNLILKTMYLYKEVDTAVQLLDRMIESEKETVKDSEQDVVCRPDDESFDLVVGMLLHENRMEAAFKYIDLNLKSGHSMSSNVFSECVFKFMASGSLDTLVSVIERCKKMDQNKALRPEWKLCLDMLDCAMKADNSELAYYALEFMAKWMIQDENMRPPRYLSVEEGLVVSLLATAGRTYSKKLLDAAWTILKRSLRKKRVANAETYLARIHAHASLGTEHLKKAFGALHEFESLYGGADKQSAEDLFSPFTALYPLVVACSHNGFATLDSVYFQLENLSKANPPYKSIAALNCIILGCANIWDVHRASETFTAISTTFGLTPDVNSYNGLICAYGKLNKRKEALELFEQLKSLGIKPNAMTYALLVDAHLVAKDPKSALSIIDEMVISGYTPTKAILKKVRRRCIREMDYESNDQVEDLAKKFGIRMGTETRRNLLFNLQYTADYV 614
F KPI+TF FLSQ+PQ P +P PP PA S + W +P P S T SL+PL FL Q+ +++ ++++LD++S+ +FADWM Q+W DMK++FE W DKNGK NKPDV LYN+YLRANLM+ A+ +LL+LV+ ME I PNTASFNL+LK MY +E + A +L++RM++S ++++ PDDES+DLV+GMLL ++++AA KYIDL LKSG+ +S VF+ECV + G LDTLVSVI+RCK QNKAL P W LC + + AM+ DNS+LAYYALEFMA+W+ + EN RPP +LSV+EG+VVS L TAGRTYS LLDAAW ILKRSLR+K+V N E+YL +I+A AS G +L++AF LHEFE Y +D + E++FSPFT+LYPLV+ACS GF TLD+VYFQLENLS+A+PPYKS+AALNC+ILGCANIWD+ RA +TF AIS++FGLTPD++SYN L+ A+G+L K EA +FE L SLG+KPNA +Y+LLVDAHL+ +DPKSALS ID+MVI+G++P+K +LKKVRRRCIRE+DY++ND+V+ LAK F IRMGTE R+++LFNL Y +YV
Sbjct: 25 FFKPITTFAFLSQEPQLANEPPDLPSTPLPPNPASGSPLYNENWRNPIPNSSLTPSLIPLGFLNQSPSSRIQALSQTLDVQSLLNVFADWMASQRWEDMKQLFEFWIRSLDKNGKPNKPDVSLYNNYLRANLMVNATAGELLDLVAQMEDYAISPNTASFNLVLKAMYRARETEAAEKLIERMLQSGEDSM----------PDDESYDLVIGMLLAMDQIDAALKYIDLTLKSGYMLSLKVFTECVRSCINKGRLDTLVSVIDRCKTTTQNKALCPTWNLCNYIAEVAMQEDNSKLAYYALEFMARWIARGENARPPVHLSVDEGMVVSALGTAGRTYSSSLLDAAWAILKRSLRQKKVPNPESYLGKIYALASFG--NLQRAFTTLHEFEEAYRNSDDGAGEEMFSPFTSLYPLVMACSKKGFETLDTVYFQLENLSRADPPYKSVAALNCVILGCANIWDLDRAYQTFEAISSSFGLTPDIHSYNALMYAFGRLKKTFEASRVFEHLVSLGVKPNATSYSLLVDAHLINRDPKSALSAIDDMVIAGFSPSKEMLKKVRRRCIRELDYDTNDRVDYLAKNFKIRMGTENRKDMLFNLDYGTNYV 617
BLAST of XM_017367110.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J1KIJ9 ((pentatricopeptide repeat-containing protein At1g26460, mitochondrial {ECO:0000313|RefSeq:XP_023002111.1, ECO:0000313|RefSeq:XP_023002112.1}))
HSP 1 Score: 725.702 bits (1872), Expect = 0.000e+0
Identity = 357/623 (57.30%), Postives = 466/623 (74.80%), Query Frame = 0
Match: A0A6J1KIJ9 ((pentatricopeptide repeat-containing protein At1g26460, mitochondrial {ECO:0000313|RefSeq:XP_023002111.1, ECO:0000313|RefSeq:XP_023002112.1}))
HSP 1 Score: 725.702 bits (1872), Expect = 0.000e+0
Identity = 357/623 (57.30%), Postives = 466/623 (74.80%), Query Frame = 0
Query: 6 IFNRSRPLILKT-LKPIFS-KPISTFPFLSQQPQ--------PLSPDPPTPAPPSQTSSATWTHP-PGS--THSLVPLDFL-QTHVVKLERIAESLDLESIKELFADWMTLQKWHDMKKVFEHWSSCYDKNGKLNKPDVGLYNHYLRANLMLKASPSQLLELVSGMESLGIHPNTASFNLILKTMYLYKEVDTAVQLLDRMIESEKETVKDSEQDVVCRPDDESFDLVVGMLLHENRMEAAFKYIDLNLKSGHSMSSNVFSECVFKFMASGSLDTLVSVIERCKKMDQNKALRPEWKLCLDMLDCAMKADNSELAYYALEFMAKWMIQDENMRPPRYLSVEEGLVVSLLATAGRTYSKKLLDAAWTILKRSLRKKRVANAETYLARIHAHASLGTEHLKKAFGALHEFESLYGGADKQSAEDLFSPFTALYPLVVACSHNGFATLDSVYFQLENLSKANPPYKSIAALNCIILGCANIWDVHRASETFTAISTTFGLTPDVNSYNGLICAYGKLNKRKEALELFEQLKSLGIKPNAMTYALLVDAHLVAKDPKSALSIIDEMVISGYTPTKAILKKVRRRCIREMDYESNDQVEDLAKKFGIRMGTETRRNLLFNLQYTADYV 614
I +R+ LI + L + S KPI+TF FLSQ+P P +P PP PA S + W +P P + T SL+PL FL Q+ +++ ++++LD++S+ +FADWM Q+W DMK++FE W DKNGK NKPDV LYN+YLRANLM+ A+ +LL+LV+ ME I PN+ASFNL+LK MY +E + A +L++RM+++ E++ PDDES+DLV+GMLL ++++AA KYIDL LKSGH +S VF+ECV + G LDTLVSVI+RCK QNKAL P W LC + + AM+ DNS+LAYYALEFMA+W+ + EN RPP +LSV+EG+VVS L TAGRTYS LLDAAW ILKRSLR+K+V N E+YL +I+A AS G +L++AF LHEFE Y +D +AE++FSPFT+LYPLVVACS GF TLD+VYFQLENLS+A+PPYKS+AALNC+ILGCANIWD+ RA +TF AIS++FGLTPD++SYN L+ A+GKL K EA ++FE L LG+KPNA +Y+LLVDAHL+ +DPKSALS+ID+MV +G+ P+K +LKKVRRRCIREMDY+SND+V+ AK F IRMGTE RR++LFNL + YV
Sbjct: 7 ILSRTHTLIRNSNLNNVCSFKPITTFTFLSQEPHLANEPADVPSTPLPPNPASGSPLYNENWRNPIPNASMTQSLIPLGFLNQSPSSRIQALSQTLDVQSLLNVFADWMASQRWDDMKQLFESWIRSLDKNGKPNKPDVNLYNNYLRANLMVNATAGELLDLVAQMEDYAISPNSASFNLVLKAMYQARETEAAEKLIERMLQTGGESM----------PDDESYDLVIGMLLSTDQIDAALKYIDLTLKSGHMLSLKVFTECVRSCVKKGRLDTLVSVIDRCKATVQNKALCPTWNLCNYIAEVAMQEDNSKLAYYALEFMARWIARGENARPPVHLSVDEGIVVSALGTAGRTYSSSLLDAAWAILKRSLRQKKVPNPESYLGKIYALASFG--NLQRAFTTLHEFEEAYRTSDDGAAEEMFSPFTSLYPLVVACSKKGFETLDTVYFQLENLSRADPPYKSVAALNCVILGCANIWDLDRAYQTFEAISSSFGLTPDIHSYNALMYAFGKLKKTFEAAKVFEHLVGLGVKPNATSYSLLVDAHLINRDPKSALSVIDDMVTAGFAPSKQMLKKVRRRCIREMDYDSNDRVDYQAKSFKIRMGTENRRDMLFNLDFGTHYV 617
BLAST of XM_017367110.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RFP0 ((Pentatricopeptide repeat-containing protein {ECO:0000313|EMBL:PSS28829.1}))
HSP 1 Score: 721.465 bits (1861), Expect = 0.000e+0
Identity = 364/627 (58.05%), Postives = 465/627 (74.16%), Query Frame = 0
Match: A0A2R6RFP0 ((Pentatricopeptide repeat-containing protein {ECO:0000313|EMBL:PSS28829.1}))
HSP 1 Score: 721.465 bits (1861), Expect = 0.000e+0
Identity = 364/627 (58.05%), Postives = 465/627 (74.16%), Query Frame = 0
Query: 1 MAMNIIFNRSRPLILKTLKPIFSKPISTFPFLSQQPQ---------PLSPDPPTPAPPSQTSSATWTHP----PGSTHSLVPLDFL-QTHVVKLERIAESLDLESIKELFADWMTLQKWHDMKKVFEHWSSCYDKNGKLNKPDVGLYNHYLRANLMLKASPSQLLELVSGMESLGIHPNTASFNLILKTMYLYKEVDTAVQLLDRMIESEKETVKDSEQDVVCRPDDESFDLVVGMLLHENRMEAAFKYIDLNLKSGHSMSSNVFSECVFKFMASGSLDTLVSVIERCKKMDQNKALRPEWKLCLDMLDCAMKADNSELAYYALEFMAKWMIQDENMRPPRYLSVEEGLVVSLLATAGRTYSKKLLDAAWTILKRSLRKKRVANAETYLARIHAHASLGTEHLKKAFGALHEFESLYGGADKQSAEDLFSPFTALYPLVVACSHNGFATLDSVYFQLENLSKANPPYKSIAALNCIILGCANIWDVHRASETFTAISTTFGLTPDVNSYNGLICAYGKLNKRKEALELFEQLKSLGIKPNAMTYALLVDAHLVAKDPKSALSIIDEMVISGYTPTKAILKKVRRRCIREMDYESNDQVEDLAKKFGIRMGTETRRNLLFNLQYTADY 613
MA I RSR LI +TL K I+TFPFLSQ+PQ +P PP PA S + W +P P SL+PL FL Q+ +++ ++++LD+ S+ +FADWMT Q+W DMK++FE W DKNGK N+PDV LYNHYLRAN+M+ AS +LL+LV+ ME I PNTASFNL+LK M+ +E + A +LL RM+++ KE++ PDDES+DLV+GML ++++A KYIDL LKSG+ +S F+ECV + G LD LVS+IERCKKMDQNKAL P W LC + D AM+ DNSELAYYALEFMAKW+ + +N RPP LSV+EGLVVS L TAGRT + KLLD +W +LKRSLR+K+V N E+YLA+I+A ASLG +L+KAF LHEFE+ +G +++ EDLFSPFT+L+PLV+ACS NGF TLDSVY+QLENLSKA+PPYKS+A LNCIILGCANIWDV RA +TF AI TFGL P+++SYN L+ A+GKL+K EA +FE L S G+KPNAMTY++LVDA+L+ +DPK+ALSIID+MV G+ P++ +LKKVRRRC+REMDY S+DQV+ LAKKF IRMGTE RR+LLFN+QY+ DY
Sbjct: 1 MASIAILTRSRTLI-RTLNHDSVKSITTFPFLSQEPQLAEPVSPPPAAAPLPPNPASGSPLYNENWRNPVASSPSLAQSLIPLGFLHQSPSSRIQALSQTLDVASLMNVFADWMTSQRWSDMKQLFEFWIRSLDKNGKPNQPDVSLYNHYLRANVMIDASAGRLLDLVAQMEDYAIAPNTASFNLVLKAMHQARETEAAEKLLQRMLQTGKESL----------PDDESYDLVIGMLFLTGQIDSALKYIDLTLKSGYILSVKTFTECVRSCVDKGRLDALVSIIERCKKMDQNKALCPPWNLCNYIADVAMQDDNSELAYYALEFMAKWIARGDNARPPVLLSVDEGLVVSALVTAGRTCNTKLLDGSWALLKRSLRQKKVPNPESYLAKIYAQASLG--NLQKAFSTLHEFETSHGNPSEEADEDLFSPFTSLHPLVLACSKNGFVTLDSVYYQLENLSKADPPYKSVAGLNCIILGCANIWDVDRAYQTFEAIGETFGLIPNIHSYNALMHAFGKLSKTSEASRVFEHLVSKGVKPNAMTYSVLVDANLIERDPKAALSIIDQMVNEGFEPSREMLKKVRRRCMREMDYTSDDQVDSLAKKFKIRMGTEKRRDLLFNIQYSVDY 614
BLAST of XM_017367110.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0EQF3 ((Tetratricopeptide repeat (TPR)-like superfamily protein {ECO:0000313|EMBL:GFY88721.1}))
HSP 1 Score: 721.465 bits (1861), Expect = 0.000e+0
Identity = 367/628 (58.44%), Postives = 467/628 (74.36%), Query Frame = 0
Match: A0A7J0EQF3 ((Tetratricopeptide repeat (TPR)-like superfamily protein {ECO:0000313|EMBL:GFY88721.1}))
HSP 1 Score: 721.465 bits (1861), Expect = 0.000e+0
Identity = 367/628 (58.44%), Postives = 467/628 (74.36%), Query Frame = 0
Query: 1 MAMNIIFNRSRPLILKTLKPIFSKPISTFPFLSQQPQ---------PLSPDPPTPAPPSQTSSATWTHP----PGSTHSLVPLDFL-QTHVVKLERIAESLDLESIKELFADWMTLQKWHDMKKVFEHWSSCYDKNGKLNKPDVGLYNHYLRANLMLKASPSQLLELVSGMESLGIHPNTASFNLILKTMYLYKEVDTAVQLLDRMIESEKETVKDSEQDVVCRPDDESFDLVVGMLLHENRMEAAFKYIDLNLKSGHSMSSNVFSECVFKFMASGSLDTLVSVIERCKKMDQNKALRPEWKLCLDMLDCAMKADNSELAYYALEFMAKWMIQDENMRPPRYLSVEEGLVVSLLATAGRTYSKKLL-DAAWTILKRSLRKKRVANAETYLARIHAHASLGTEHLKKAFGALHEFESLYGGADKQSAEDLFSPFTALYPLVVACSHNGFATLDSVYFQLENLSKANPPYKSIAALNCIILGCANIWDVHRASETFTAISTTFGLTPDVNSYNGLICAYGKLNKRKEALELFEQLKSLGIKPNAMTYALLVDAHLVAKDPKSALSIIDEMVISGYTPTKAILKKVRRRCIREMDYESNDQVEDLAKKFGIRMGTETRRNLLFNLQYTADY 613
MA I NRSR LI +TL K I+TFPFLSQ+PQ +P PP PA S + W +P P SL+PL FL Q+ +++ ++++LD+ S+ +FADWMT Q+W DMK++FE W DKNGK NKPDV LYNHYLRAN+M+ AS +LL+LV+ ME I PNTASFNL+LK M+ +E + A +LL RM+++ KE++ PDDES+DLV+GML +++++A KYIDL LKSG+ +S F+ECV + G LD LVS+IERCKKMDQNKAL P W LC + D AM+ DNSELAYYALEFMAKW+ + +N RPP LSV+EGLVVS L TAGRT + KLL D +W +LKRSLR+K+V N E+YLA+I+A ASLG +L+KAF LHEFE+ +G +++ EDLFSPFT+LYPLV+ACS NGF TLDSVY+QLENLSKA+PPYKS+A LNCIILGCANIWDV RA +TF AI TFGL P+++SYN L+ A+GKL+K EA +FE L S G+KPNAMTY++LVDA+L+ +DPK+ALSIID+MV G+ P++ +LKKVRRRC+REMDY S+DQV+ LAKKF IRMGTE RR+LLFN+QY+ DY
Sbjct: 1 MASIAILNRSRTLI-RTLNHDSVKSITTFPFLSQEPQLAEPVSPPPAAAPLPPNPASGSPLYNENWRNPVASSPSLAQSLIPLGFLHQSPSSRIQALSQTLDVASLMNVFADWMTSQRWIDMKQLFEFWIRSLDKNGKPNKPDVSLYNHYLRANVMIDASAGRLLDLVAQMEDYAIAPNTASFNLVLKAMHQARETEAAEKLLQRMLQTGKESL----------PDDESYDLVIGMLFLTDQIDSALKYIDLTLKSGYILSVKTFTECVRSCVDKGRLDALVSIIERCKKMDQNKALCPPWNLCNYIADVAMQDDNSELAYYALEFMAKWIARGDNARPPVLLSVDEGLVVSALVTAGRTCNTKLLLDGSWALLKRSLRQKKVPNPESYLAKIYAQASLG--NLQKAFSTLHEFETSHGNPSEEADEDLFSPFTSLYPLVLACSKNGFLTLDSVYYQLENLSKADPPYKSVAGLNCIILGCANIWDVDRAYQTFEAIGETFGLIPNIHSYNALMHAFGKLSKTSEASRVFEHLVSKGVKPNAMTYSVLVDANLIERDPKAALSIIDQMVNEGFEPSREMLKKVRRRCMREMDYTSDDQVDSLAKKFKIRMGTEKRRDLLFNIQYSVDY 615
BLAST of XM_017367110.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J1HEP6 ((pentatricopeptide repeat-containing protein At1g26460, mitochondrial-like {ECO:0000313|RefSeq:XP_022962398.1}))
HSP 1 Score: 719.539 bits (1856), Expect = 0.000e+0
Identity = 348/605 (57.52%), Postives = 450/605 (74.38%), Query Frame = 0
Match: A0A6J1HEP6 ((pentatricopeptide repeat-containing protein At1g26460, mitochondrial-like {ECO:0000313|RefSeq:XP_022962398.1}))
HSP 1 Score: 719.539 bits (1856), Expect = 0.000e+0
Identity = 348/605 (57.52%), Postives = 450/605 (74.38%), Query Frame = 0
Query: 22 FSKPISTFPFLSQQPQ--------PLSPDPPTPAPPSQTSSATWTHP---PGSTHSLVPLDFL-QTHVVKLERIAESLDLESIKELFADWMTLQKWHDMKKVFEHWSSCYDKNGKLNKPDVGLYNHYLRANLMLKASPSQLLELVSGMESLGIHPNTASFNLILKTMYLYKEVDTAVQLLDRMIESEKETVKDSEQDVVCRPDDESFDLVVGMLLHENRMEAAFKYIDLNLKSGHSMSSNVFSECVFKFMASGSLDTLVSVIERCKKMDQNKALRPEWKLCLDMLDCAMKADNSELAYYALEFMAKWMIQDENMRPPRYLSVEEGLVVSLLATAGRTYSKKLLDAAWTILKRSLRKKRVANAETYLARIHAHASLGTEHLKKAFGALHEFESLYGGADKQSAEDLFSPFTALYPLVVACSHNGFATLDSVYFQLENLSKANPPYKSIAALNCIILGCANIWDVHRASETFTAISTTFGLTPDVNSYNGLICAYGKLNKRKEALELFEQLKSLGIKPNAMTYALLVDAHLVAKDPKSALSIIDEMVISGYTPTKAILKKVRRRCIREMDYESNDQVEDLAKKFGIRMGTETRRNLLFNLQYTADYV 614
F KPI+TF FLSQ+PQ P +P PP PA S + W +P T S++PL FL Q+ ++E ++++LD++S+ +FADWM Q+W DMK++FE W DKNGK NKPDV LYN+YLRANLM+ AS +LL+LV+ ME I PNTASFNL+LK MY KE + A +L++RM+++ +E++ PDDES+DLV+GMLL ++++AA KYIDL LKSGH +S VF+ECV + G LDTLVSVI+RCK QNKAL P W LC + + A + DNS+LAYYALEFMA+W+ + EN RPP +LSV+EG+VVS L TAGRTYS LLDA+W ILKRSL +K+V N E+YL +I+A AS G +L++AF L EFE Y AD + E++FSPFT+LYPLVVACS GF TLD+VYFQLENLS+A+PPYKS++ALNC+ILGCANIWD+ RA +TF AI ++FGLTPD++SYN LI A+G+L K EA +FE L LG+KPNA +Y+LLVDAH++ +DPKSALS+ID MV +G+ P+K +LKK RRRC+REMDY SND+V+ LAK F IRMGTE RR++LFNL Y +YV
Sbjct: 25 FFKPITTFTFLSQEPQLANEPADIPSTPLPPNPASGSPLYNENWRNPIPNASRTLSMIPLGFLNQSPSSRIEALSQTLDVQSLLNVFADWMASQRWEDMKQLFEFWIRSLDKNGKPNKPDVNLYNNYLRANLMVNASAGELLDLVAQMEDYAISPNTASFNLVLKAMYQAKETEAAEKLIERMLQTGEESM----------PDDESYDLVIGMLLSTDQIDAALKYIDLTLKSGHMLSLKVFTECVRSCVKKGRLDTLVSVIDRCKATVQNKALCPTWNLCNFIAEVATQEDNSKLAYYALEFMARWIARGENARPPVHLSVDEGIVVSALGTAGRTYSSSLLDASWAILKRSLGQKKVPNLESYLGKIYALASFG--NLQRAFTTLREFEEAYRTADDGAGEEMFSPFTSLYPLVVACSKKGFETLDTVYFQLENLSRADPPYKSVSALNCVILGCANIWDLDRAYQTFEAIGSSFGLTPDIHSYNALIYAFGRLKKTFEAARVFEHLVGLGVKPNAKSYSLLVDAHIINRDPKSALSVIDNMVTAGFVPSKEMLKKARRRCMREMDYPSNDKVDYLAKNFKIRMGTENRRDILFNLDYGTNYV 617
BLAST of XM_017367110.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8ACP4 ((pentatricopeptide repeat-containing protein At1g26460, mitochondrial-like {ECO:0000313|RefSeq:XP_010259508.1}))
HSP 1 Score: 718.383 bits (1853), Expect = 0.000e+0
Identity = 352/619 (56.87%), Postives = 456/619 (73.67%), Query Frame = 0
Match: A0A1U8ACP4 ((pentatricopeptide repeat-containing protein At1g26460, mitochondrial-like {ECO:0000313|RefSeq:XP_010259508.1}))
HSP 1 Score: 718.383 bits (1853), Expect = 0.000e+0
Identity = 352/619 (56.87%), Postives = 456/619 (73.67%), Query Frame = 0
Query: 6 IFNRSRPLILKTLKPIFSKPISTFPFLSQQPQPLSPD-------PPTPAPPSQTSSATWTHP-PGST--HSLVPLDFL-QTHVVKLERIAESLDLESIKELFADWMTLQKWHDMKKVFEHWSSCYDKNGKLNKPDVGLYNHYLRANLMLKASPSQLLELVSGMESLGIHPNTASFNLILKTMYLYKEVDTAVQLLDRMIESEKETVKDSEQDVVCRPDDESFDLVVGMLLHENRMEAAFKYIDLNLKSGHSMSSNVFSECVFKFMASGSLDTLVSVIERCKKMDQNKALRPEWKLCLDMLDCAMKADNSELAYYALEFMAKWMIQDENMRPPRYLSVEEGLVVSLLATAGRTYSKKLLDAAWTILKRSLRKKRVANAETYLARIHAHASLGTEHLKKAFGALHEFESLYGGADKQSAEDLFSPFTALYPLVVACSHNGFATLDSVYFQLENLSKANPPYKSIAALNCIILGCANIWDVHRASETFTAISTTFGLTPDVNSYNGLICAYGKLNKRKEALELFEQLKSLGIKPNAMTYALLVDAHLVAKDPKSALSIIDEMVISGYTPTKAILKKVRRRCIREMDYESNDQVEDLAKKFGIRMGTETRRNLLFNLQYTADY 613
+ RSR KTL P + ISTF FL Q+PQ P PP P+ S W +P P S SLVPLDFL QT K++ ++ +LD++S+ +FADWMT ++W DMK++FE W D+NGK N+PDV LYNHYLRANL A+ +LL+LV+ ME + PNTASFNL+LK MY KE A +LL+RM+++ KE++ P++ES++L+ GM N+++AA KY+D+ LKSG+ +S VF+ECV+ + +G LDTL S+IERCK MDQNKAL P W LC + D AM+ADNS+LA+YALEF+AKW+ + EN RPP LSV+EGLVVS L TA RTYS L+DA+W IL+RSLR+K+ N+E+YL +I+A+ASLG +L++AF LHEFES YG + K S +D+FSPFT+LYPLVVA S NGF TLDSVYFQLENLS A+PPYKS+A LNCIILGCANIWD+ RA +TF AIS FGLTP+++SYN L+ A+GKL K EA +FE L SLG+KPNA +Y+LLVDAHL+ +D K+ALS+IDEMV +G+ P++ LKK+RRRC+RE DYES+DQVE L++KF IRMGTE RR +LFNLQY+ +Y
Sbjct: 3 MLTRSRTF-FKTLIPNTFRTISTFTFLCQEPQLAEPSISDSTPLPPNPSSGSPLYQQNWRNPIPNSVLDQSLVPLDFLHQTPSSKIQSLSRTLDVQSLMNVFADWMTSRRWADMKQLFEFWIRSLDRNGKPNRPDVNLYNHYLRANLENGATAGELLDLVAQMEDYMVVPNTASFNLVLKAMYQAKETVAAEKLLERMLQAGKESL----------PNEESYELITGMFFLTNQIDAALKYLDMTLKSGYMVSMRVFTECVWSCVNAGRLDTLASIIERCKAMDQNKALCPSWNLCNYIADVAMQADNSKLAFYALEFLAKWIARGENARPPVLLSVDEGLVVSALGTAARTYSATLVDASWAILRRSLRQKKAPNSESYLGKIYAYASLG--NLQRAFSTLHEFESAYGNSTKASDQDMFSPFTSLYPLVVASSKNGFETLDSVYFQLENLSHADPPYKSVATLNCIILGCANIWDLDRAYQTFEAISAIFGLTPNIHSYNALMHAFGKLKKTFEASRVFEHLASLGVKPNATSYSLLVDAHLINRDAKAALSVIDEMVNAGFVPSRETLKKIRRRCMREFDYESDDQVESLSRKFKIRMGTENRRGMLFNLQYSTEY 608
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7CFI0 | E-Value: 0.000e+0, PID: 58.98 | (Uncharacterized protein {ECO:0000313|EMBL:MPA7893... [more] |
| A0A5J5ASU2 | E-Value: 0.000e+0, PID: 59.11 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8532... [more] |
| A0A1U7ZUN0 | E-Value: 0.000e+0, PID: 58.11 | (pentatricopeptide repeat-containing protein At1g2... [more] |
| A0A6J1GHH4 | E-Value: 0.000e+0, PID: 57.62 | (pentatricopeptide repeat-containing protein At1g2... [more] |
| A0A6J1BQT9 | E-Value: 0.000e+0, PID: 58.18 | (pentatricopeptide repeat-containing protein At1g2... [more] |
| A0A6J1KIJ9 | E-Value: 0.000e+0, PID: 57.30 | (pentatricopeptide repeat-containing protein At1g2... [more] |
| A0A2R6RFP0 | E-Value: 0.000e+0, PID: 58.05 | (Pentatricopeptide repeat-containing protein {ECO:... [more] |
| A0A7J0EQF3 | E-Value: 0.000e+0, PID: 58.44 | (Tetratricopeptide repeat (TPR)-like superfamily p... [more] |
| A0A6J1HEP6 | E-Value: 0.000e+0, PID: 57.52 | (pentatricopeptide repeat-containing protein At1g2... [more] |
| A0A1U8ACP4 | E-Value: 0.000e+0, PID: 56.87 | (pentatricopeptide repeat-containing protein At1g2... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |