Resource Type:
Polypeptide
Name:
XM_017367834.1
Identifier:
XM_017367834.1-protein
Sequence:
MDPPPTDGGIERDNFEEVKEGGPMHHCNLFDAEVTHKIAEAFLPGLASAC
IDNTLGGLFKSPGSVAVAIRKEMVDALIQRSETFVAEAVVLEGEAETEVP
EHPFDIISDFIDDFASSKNNFFSRVSGWMLSDMREDKIDEFAQEMEINGF
WMIDRRESVAQTLLKNVDFKDAFHCNKKFNTADELVEHLPQCRFRTIHCP
NEGCDDQFSAGNSEIHDAVCPFKMLPCEQNCSEILMRRDMDRHCITDCPM
KHVSCPFSSIGCASSIPRARLEQHKLENVRDHVLSILQSIHKKASTEDLK
HRVDQLIELSSPEQLAKPQNVRPLTTLIKNLEAKLGPLEVMPKTTSSEEI
PSQNEGSTDSPKTKEEHVESSNTMEVRTQPPPENKTNDSPIKHIDSPQSS
TMHSPARTEEFEDSPTKGSSMQSPAKEQHLAGSSDGNDDQGKNNELMDSP
TKDRTRELPAEEKHPVESSVVAEHVPAAKSEEHNVSLDRESPSANDLSTG
QAKMDIPMDSAKNDSTRESPAEEYPVDSSTVAKDLADSPTKIEEHKESSE
RSSLSGNDISTSPAKKDEVENKDLSDPPAKSEV
Sequence Length:
583
Sequence Checksum:
a4f472376e61f733a3434e0786f3041b
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017367834.1, derives from mRNA, XM_017367834.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017367834.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017367834.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZM85 (TRAF-type domain-containing protein {ECO:0000259|PROSITE:PS50145})
HSP 1 Score: 528.094 bits (1359), Expect = 1.097e-178
Identity = 262/472 (55.51%), Postives = 337/472 (71.40%), Query Frame = 0
Match: A0A5J4ZM85 (TRAF-type domain-containing protein {ECO:0000259|PROSITE:PS50145})
HSP 1 Score: 528.094 bits (1359), Expect = 1.097e-178
Identity = 262/472 (55.51%), Postives = 337/472 (71.40%), Query Frame = 0
Query: 1 MDPPPTDGGIERDNFEEVKEGGPMHHCNLFDAEVTHKIAEAFLPGLASACIDNTLGGLFKSPGSVAVAIRKEMVDALIQRSETFVAEAVVLEGEAETEVPEHPFDIISDFIDDFASSKNNFFSRVSGWMLSDMREDKIDEFAQEMEINGFWMIDRRESVAQTLLKNVDFKDAFHCNKKFNTADELVEHLPQCRFRTIHCPNEGCDDQFSAGNSEIHDAVCPFKMLPCEQNCSEILMRRDMDRHCITDCPMKHVSCPFSSIGCASSIPRARLEQHKLENVRDHVLSILQSIHKKASTEDLKHRVDQLIELSSPEQLAKPQNVRPLTTLIKNLEAKLGPLEVMPKTTSSEEI---PSQNEGSTDSPKTKEEHVESSNTMEVRTQPPPENKTNDSPIKHIDSPQSSTMHSPARTEEFEDSPTKGSSMQSPAKEQHL----AGSSDGNDDQGKNNELMDSPT-KDRTRELPAEEKH 464
MD P TD ++ + FEEVKEGGP+ C+LFD EV HKIA+ FLPGL SAC+DNT GG+FKSP SVAV IRKEMVD L QRSETFVAE+V+LEG + +V +HP+DIISD +DDFA SK NFFSRVSGW+LS+ RED+ID+F QEME+NGFW++DRRE++AQTLL+NVD K+ FHCN KFN+ +EL+EH+PQC FRT++C +EGC+ +F A + HD++CPFK+LPCEQ CS+ +MRR+MDRHCIT CPMK V+CPF +GC S+IP+ +EQH+ EN+ H+L +LQ IHK+AS EDL+ RV+QL E SSP QLA+ ++VR LT IKNLEAKLGPL V K SEE P + E TDSP + ES P + ++ SP K + S ++ EE +SPTK +SPAKE+ A + N+ K E M+SPT K++ E PAE ++
Sbjct: 221 MDLPATDVEVKPEKFEEVKEGGPLFGCDLFDTEVVHKIAQVFLPGLGSACVDNTTGGIFKSPASVAVDIRKEMVDYLTQRSETFVAESVILEGGPDAKVSDHPYDIISDLVDDFAISKRNFFSRVSGWLLSERREDRIDDFVQEMEVNGFWLMDRREAIAQTLLRNVDLKNTFHCNMKFNSVEELLEHVPQCSFRTLNCTSEGCNARFCAAHLGNHDSICPFKILPCEQKCSDRIMRREMDRHCITVCPMKLVNCPFYPVGCQSTIPQCMIEQHRSENIHSHMLHVLQGIHKEASMEDLRARVEQLDESSSPGQLAEARDVRSLTIKIKNLEAKLGPLIVNTKNKVSEECIESPVKKEECTDSPTKGKALTES---------PSKKEESTLSPTK-----REECTDSLSKREECAESPTKKEFTESPAKEEEFTESPAKKDETNESPSKKVECMESPTEKEQYMESPAEREY 678
BLAST of XM_017367834.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7GPE3 (TRAF-type domain-containing protein {ECO:0000259|PROSITE:PS50145})
HSP 1 Score: 503.056 bits (1294), Expect = 2.930e-172
Identity = 250/434 (57.60%), Postives = 315/434 (72.58%), Query Frame = 0
Match: A0A7J7GPE3 (TRAF-type domain-containing protein {ECO:0000259|PROSITE:PS50145})
HSP 1 Score: 503.056 bits (1294), Expect = 2.930e-172
Identity = 250/434 (57.60%), Postives = 315/434 (72.58%), Query Frame = 0
Query: 1 MDPPPTDGGIERDNFEEVKEGGPMHHCNLFDAEVTHKIAEAFLPGLASACIDNTLGGLFKSPGSVAVAIRKEMVDALIQRSETFVAEAVVLEGEAETEVPEHPFDIISDFIDDFASSKNNFFSRVSGWMLSDMREDKIDEFAQEMEINGFWMIDRRESVAQTLLKNVDFKDAFHCNKKFNTADELVEHLPQCRFRTIHCPNEGCDDQFSAGNSEIHDAVCPFKMLPCEQNCSEILMRRDMDRHCITDCPMKHVSCPFSSIGCASSIPRARLEQHKLENVRDHVLSILQSIHKKASTEDLKHRVDQLIELSSPEQLAKPQNVRPLTTLIKNLEAKLGPLEVMPKTTSSEEIPSQNEGSTDSPKTKEEHVESSNTMEVRT----QPPPENKTNDSPIKHIDSPQSSTMH--SPARTEEFEDSPTKGSSMQSPAKEQ 428
MD P TD I+ + FEEVKE GP +HC LFD E+ HKIA+ FLPGLASAC+DNT GGLFKSP SVAV IRKEMV+ L RSETFVAE+V+LEG E EV ++P+DIIS+F+DDFASSK N FSRVSGW+LS+ RED+ID+F QEMEINGFW I+RRE +AQTLLKNVDFK+ FHCN KFN+A+EL H PQC FRT+ C NEGC+ +F A + E HD++CPFK+LPCEQ CS +MRR+MD+HCIT CPMK ++CPF +GC SS+ ++ +EQH+LEN++ H+L ILQ +HK AS +DLK RV+QL EL SP +LA ++VR LT K+LEAKLGPLEV S+ +E +SP KEE +S+ E R +PP + + N+SP PQ + H S + EE + PTK S P K++
Sbjct: 1 MDLPATDVEIKPEKFEEVKEAGPSYHCGLFDTEIVHKIAQEFLPGLASACVDNTTGGLFKSPASVAVEIRKEMVEFLTLRSETFVAESVILEGGPEAEVSDNPYDIISNFVDDFASSKRNIFSRVSGWLLSERREDRIDDFVQEMEINGFWFIERREVIAQTLLKNVDFKNIFHCNMKFNSAEELSGHNPQCGFRTVDCTNEGCNARFCAAHLENHDSICPFKVLPCEQKCSASIMRREMDKHCITICPMKLMNCPFYQVGCQSSVSQSTIEQHRLENLQSHLLYILQVVHKDASLDDLKKRVEQLEELDSPGRLAAARDVRSLTFASKDLEAKLGPLEVNINVKVSD-----SEDHIESPNKKEESAQSATQEEGRAELSIEPPNKKEHNESP------PQEAEEHNESLPKKEECAELPTKDCSDSPPKKDE 423
BLAST of XM_017367834.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9GR92 ((Homogentisate solanesyltransferase {ECO:0000313|EMBL:PIN07796.1}) (2.5.1.117 {ECO:0000313|EMBL:PIN07796.1}))
HSP 1 Score: 498.434 bits (1282), Expect = 3.941e-169
Identity = 264/565 (46.73%), Postives = 362/565 (64.07%), Query Frame = 0
Match: A0A2G9GR92 ((Homogentisate solanesyltransferase {ECO:0000313|EMBL:PIN07796.1}) (2.5.1.117 {ECO:0000313|EMBL:PIN07796.1}))
HSP 1 Score: 498.434 bits (1282), Expect = 3.941e-169
Identity = 264/565 (46.73%), Postives = 362/565 (64.07%), Query Frame = 0
Query: 1 MDPPPTDGGIERDNFEEVKEGGPMHHCNLFDAEVTHKIAEAFLPGLASACIDNTLGGLFKSPGSVAVAIRKEMVDALIQRSETFVAEAVVLEGEAETEVPEHPFDIISDFIDDFASSKNNFFSRVSGWMLSDMREDKIDEFAQEMEINGFWMIDRRESVAQTLLKNVDFKDAFHCNKKFNTADELVEHLPQCRFRTIHCPNEGCDDQFSAGNSEIHDAVCPFKMLPCEQNCSEILMRRDMDRHCITDCPMKHVSCPFSSIGCASSIPRARLEQHKLENVRDHVLSILQSIHKKASTEDLKHRVDQLIELSSPEQLAKPQNVRPLTTLIKNLEAKLGPLEVMPKTTSSEEIPSQNEGSTDSPKTKEEHVESSNTMEVRTQPPPENKTN--DSPIKHIDSPQSSTMHSPARTEEFEDSPTKGSSMQSPAKEQHLAGSSDGNDDQGKNNELMDSPTKDRTRELPAEEKHPVESSVVAEHVPAAKSEEHNVSLDRESPSANDLSTGQAKMDIPMDSAKNDSTRESPAEEYPVDSSTVAKDLADSPTKIEEHKESSERSSLSGNDISTSP 563
M+PP D ++ + E KEGG ++HC+L+DA++ HKIA+ FLPGLASACIDNT G LF++P SVAV IR+EMVD LI+RSE FVAE+VVL+G EV E P+DIISDF+DDFAS+K NF SR+SGW+LSD REDKID+F +EMEINGFW+++RRESVAQTLLKNVDFK+ +HCN F + ++L EH C FRT+ C NEGCD +FSA + HD++CPFK+L CEQNC +MRR+MDRHCIT CPMK V CPF S+GC SSIP+ +EQH+ EN+R H++ ILQ++HK+AS EDLK RV++LI+LSSP +LA ++ R LT +IK+L+AKLGPL++ SS+E+ DS KEE S T +V+ + P+ KT +SP + DS S+ E + + Q P + +A S+ D + +E D ++ E E+ V+ + +H S + SL ++ A Q K ++ M+ + D E P E + SP K+EEHK + +++ ++ ST P
Sbjct: 1 MNPPTDDIDLKPETLEGEKEGGALNHCDLYDADIVHKIAQEFLPGLASACIDNTTGDLFRNPASVAVDIRREMVDYLIKRSENFVAESVVLDGGPNEEVSEDPYDIISDFVDDFASTKRNFLSRLSGWLLSDTREDKIDDFVREMEINGFWLLNRRESVAQTLLKNVDFKNIYHCNMSFKSLEDLEEHKLDCGFRTMICTNEGCDSRFSAAQGDHHDSICPFKILKCEQNCPATIMRREMDRHCITICPMKLVKCPFYSVGCHSSIPQCTIEQHRSENLRSHLVYILQAVHKEASAEDLKERVEELIKLSSPGKLAVVRDARALTFMIKDLDAKLGPLKIKTTQKSSDEV-------RDSTDKKEESAGGSPTEQVKFEESPKAKTESVNSPSRSSDSTNDSSQEKEKSVESLTNVNVQLE--QQPDNKNVVASISEQEDLKESPHEREDGLAEENKTEAQMEKSSQVKVAATIKHEHFTSSTITDSSLGKDVGLA-----LQNKSEVEMEKSPEDKEAE-PVERF-----------TSSPIKVEEHKVEKQTGAVAESEESTKP 539
BLAST of XM_017367834.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0E2S2 ((TRAF-like superfamily protein {ECO:0000313|EMBL:GFY80718.1}))
HSP 1 Score: 489.189 bits (1258), Expect = 5.652e-166
Identity = 244/432 (56.48%), Postives = 310/432 (71.76%), Query Frame = 0
Match: A0A7J0E2S2 ((TRAF-like superfamily protein {ECO:0000313|EMBL:GFY80718.1}))
HSP 1 Score: 489.189 bits (1258), Expect = 5.652e-166
Identity = 244/432 (56.48%), Postives = 310/432 (71.76%), Query Frame = 0
Query: 1 MDPPPTDGGIERDNFEEVKEGGPMHHCNLFDAEVTHKIAEAFLPGLASACIDNTLGGLFKSPGSVAVAIRKEMVDALIQRSETFVAEAVVLEGEAETEVPEHPFDIISDFIDDFASSKNNFFSRVSGWMLSDMREDKIDEFAQEMEINGFWMIDRRESVAQTLLKNVDFKDAFHCNKKFNTADELVEHLPQCRFRTIHCPNEGCDDQFSAGNSEIHDAVCPFKMLPCEQNCSEILMRRDMDRHCITDCPMKHVSCPFSSIGCASSIPRARLEQHKLENVRDHVLSILQSIHKKASTEDLKHRVDQLIELSSPEQLAKPQNVRPLTTLIKNLEAKLGPLEVMPKTTSS-EEIPSQNEGSTDSPKTKEEHVESSNTMEVRTQPPPENKT-NDSPIKHIDSPQSSTMHSPARTEEFEDSPTK-GSSMQSPAKEQH 429
MD P T ++ + FEE KE GP C L D EV HKIA+ FLPGLASAC+DNT GGLF+SP SVAV +RKEMV L QRSETFVAE+ LE + E +V +HP+DIISD +DDFASSK N FSRVSGW+LS+ RED+ID+F QEMEINGFW +DRRE+VAQTLLKNVDFK+A+HCN KFNTA+EL H QC FRT++C NEGC+ F A + E HD++CPFK+LPCEQ CS+ +MRR+MD+HCIT C MK V+CPF +GC S+ P ++EQH+LE+V H+L +LQ IHK AS EDLK RV +L E + P +LA ++VR LT IK+LEA+LGPL+V K + E P+ E T S +E + ES + E TQ P + + N+SP K + S+ +EEF +SP+K G QSP+K++H
Sbjct: 1 MDLPATATEVKPEKFEESKESGPFIRCGLLDTEVVHKIAQVFLPGLASACVDNTTGGLFRSPASVAVDMRKEMVAYLTQRSETFVAESFTLENDPEAQVSDHPYDIISDMVDDFASSKRNIFSRVSGWILSERREDRIDDFVQEMEINGFWFMDRREAVAQTLLKNVDFKNAYHCNMKFNTAEELARHSLQCSFRTMNCTNEGCNVGFCAAHLENHDSICPFKILPCEQKCSDSIMRREMDKHCITVCSMKLVNCPFYPVGCQSTTPLCKMEQHRLEDVHSHLLYVLQVIHKDASVEDLKRRVVELEESAPPGRLAAARDVRSLTLAIKDLEAELGPLKVNTKVSEDLTESPNIKEERTPSATQEEANAESPSKKEEFTQSPGKKEQHNESPTKEEQHDELSSQKEDI-SEEFTESPSKNGEFAQSPSKKEH 431
BLAST of XM_017367834.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7GKS3 (TRAF-type domain-containing protein {ECO:0000259|PROSITE:PS50145})
HSP 1 Score: 492.271 bits (1266), Expect = 6.156e-166
Identity = 250/468 (53.42%), Postives = 317/468 (67.74%), Query Frame = 0
Match: A0A7J7GKS3 (TRAF-type domain-containing protein {ECO:0000259|PROSITE:PS50145})
HSP 1 Score: 492.271 bits (1266), Expect = 6.156e-166
Identity = 250/468 (53.42%), Postives = 317/468 (67.74%), Query Frame = 0
Query: 1 MDPPPTDGGIERDNFEEVKEGGPMHHCNLFDAEVTHKIAEAFLPGLASACIDNTLGGLFKSPGSVAVAIRKEMVDALIQRSETFVAEAVVLEGEAETEVPEHPFDIISDFIDDFASSKNNFFSRVSGWMLSDMREDKIDEFAQEMEINGFWMIDRRESVAQTLLKNVDFKDAFHCNKKFNTADELVEHLPQCRFRTIHCPNEGCDDQFSAGNSEIHDAVCPFKMLPCEQNCSEILMRRDMDRHCITDCPMKHVSCPFSSIGCASSIPRARLEQHKLENVRDHVLSILQSIHKKASTEDLKHRVDQLIELSSPEQLAKPQNVRPLTTLIKNLEAKLGPLEVMPKTTSSEEIPSQNEGSTDSPKTKEEHVESSNTMEVR-TQPPPENKTNDSPIKHIDSPQSSTMHSPARTEEFEDSPTKGSSMQSPAKEQHLAGSSDGNDDQGKNNELMDSPTKDRTRELPAE--EKHP 465
MD P TD I+ + FEEVKE GP +HC LFD E+ HKIA+ FLPGLASAC+DNT GGLFKSP SVAV IRKEMV+ L RSETFVAE+V+LEG E EV ++P+DIIS+F+DDFASSK N FSRVSGW+LS+ RED+ID+F QEMEINGFW I+RRE +AQTLLKNVDFK+ FHCN KFN+A+EL H PQC FRT+ C NEGC+ +F A + E HD++CPFK+LPCEQ CS +MRR+MD+HCIT CPMK ++CPF +GC SS+ ++ +EQH+LEN++ H+L ILQ +HK AS +DLK RV+QL EL SP +LA ++VR LT K+LEAKLGPLEV + N +DS E+H+ES N + + +Q P + P H P + P K + SP+ ++ S Q + M P K R + P + E HP
Sbjct: 150 MDLPATDVEIKPEKFEEVKEAGPSYHCGLFDTEIVHKIAQEFLPGLASACVDNTTGGLFKSPASVAVEIRKEMVEFLTLRSETFVAESVILEGGPEAEVSDNPYDIISNFVDDFASSKRNIFSRVSGWLLSERREDRIDDFVQEMEINGFWFIERREVIAQTLLKNVDFKNIFHCNMKFNSAEELSGHNPQCGFRTVDCTNEGCNARFCAAHLENHDSICPFKVLPCEQKCSASIMRREMDKHCITICPMKLMNCPFYQVGCQSSVSQSTIEQHRLENLQSHLLYILQVVHKDASLDDLKKRVEQLEELDSPGRLAAARDVRSLTFASKDLEAKLGPLEV-----------NINVKVSDS----EDHIESPNKKKSQHSQLPKKKGVRSCPSNH-----------PTKKNTMSHPPKKQKNTMSPSLKKKNVPSYPPKIAQTHHLRKMSHPKKKRNQSHPMKKAESHP 591
BLAST of XM_017367834.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6S209 ((TNF receptor-associated factor like {ECO:0000313|EMBL:PSS36279.1}))
HSP 1 Score: 488.034 bits (1255), Expect = 1.214e-165
Identity = 242/464 (52.16%), Postives = 315/464 (67.89%), Query Frame = 0
Match: A0A2R6S209 ((TNF receptor-associated factor like {ECO:0000313|EMBL:PSS36279.1}))
HSP 1 Score: 488.034 bits (1255), Expect = 1.214e-165
Identity = 242/464 (52.16%), Postives = 315/464 (67.89%), Query Frame = 0
Query: 1 MDPPPTDGGIERDNFEEVKEGGPMHHCNLFDAEVTHKIAEAFLPGLASACIDNTLGGLFKSPGSVAVAIRKEMVDALIQRSETFVAEAVVLEGEAETEVPEHPFDIISDFIDDFASSKNNFFSRVSGWMLSDMREDKIDEFAQEMEINGFWMIDRRESVAQTLLKNVDFKDAFHCNKKFNTADELVEHLPQCRFRTIHCPNEGCDDQFSAGNSEIHDAVCPFKMLPCEQNCSEILMRRDMDRHCITDCPMKHVSCPFSSIGCASSIPRARLEQHKLENVRDHVLSILQSIHKKASTEDLKHRVDQLIELSSPEQLAKPQNVRPLTTLIKNLEAKLGPLEVMPKTT--------SSEEI---PSQNEGSTDSPKTKEEHVESSNTMEVRTQPPPENKTNDSPIKHIDSPQSSTMHSPARTEEFEDSPTKGSSMQSPAKEQHLAGSSDGNDDQGKNNELMDSPTKD 453
MD P T ++ + FEE KE GP C L D EV HKIA+ FLPGLASAC+DNT GGLF+SP SVAV +RKEMV L QRSETFVAE+ LE + E +V +HP+DIISD +DDFASSK N FSRVSGW+LS+ RED+ID+F QEMEI+GFW +DRRE+VAQTLLKNVDFK+A+HCN KFN A+EL H QC FRT++CPNEGC+ +F A + E HD++CPFK+LPCEQ CS+ +MRR+MD+HCIT C MK V+CPF +GC S+ P +EQH LE+V H+L +LQ IHK A EDLK RV +L E + P +LA ++VR LT IK+LEA+LGPL+V K + EE+ +Q E + +SP+ KEE +S+ E + P + + +D + SP++ +EF SP+K +SP K++ ++ K + DSP KD
Sbjct: 1 MDLPATATEVKPEKFEESKEPGPFFRCGLLDTEVVHKIAQVFLPGLASACVDNTTGGLFRSPASVAVDMRKEMVAYLTQRSETFVAESFTLENDPEAQVSDHPYDIISDMVDDFASSKRNIFSRVSGWILSERREDRIDDFVQEMEISGFWFMDRREAVAQTLLKNVDFKNAYHCNMKFNMAEELARHSLQCSFRTMNCPNEGCNVRFCAAHLENHDSICPFKILPCEQKCSDSIMRREMDKHCITVCSMKLVNCPFYLVGCQSTTPLCNMEQHCLEDVHSHLLYVLQVIHKDAFVEDLKRRVVELEESAPPGRLAAARDVRSLTLAIKDLEAELGPLKVNTKVSEDLTASPNKKEELAPSATQEEANAESPRKKEEFTQSTGKKEEHNESPTKEEQHDELSSQKEDISEEFTESPSKNKEFAQSPSKKEHSKSPPKKEQ------RDELSSKKEDFSDSPPKD 458
BLAST of XM_017367834.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A4KW81 (TRAF-type domain-containing protein {ECO:0000259|PROSITE:PS50145} (Fragment))
HSP 1 Score: 487.649 bits (1254), Expect = 4.127e-165
Identity = 270/572 (47.20%), Postives = 358/572 (62.59%), Query Frame = 0
Match: A0A6A4KW81 (TRAF-type domain-containing protein {ECO:0000259|PROSITE:PS50145} (Fragment))
HSP 1 Score: 487.649 bits (1254), Expect = 4.127e-165
Identity = 270/572 (47.20%), Postives = 358/572 (62.59%), Query Frame = 0
Query: 1 MDPPPTDGGIERDNFEEVKEGGPMHHCNLFDAEVTHKIAEAFLPGLASACIDNTLGGLFKSPGSVAVAIRKEMVDALIQRSETFVAEAVVLEGEAETEVPEHPFDIISDFIDDFASSKNNFFSRVSGWMLSDMREDKIDEFAQEMEINGFWMIDRRESVAQTLLKNVDFKDAFHCNKKFNTADELVEHLPQCRFRTIHCPNEGCDDQFSAGNSEIHDAVCPFKMLPCEQNCSEILMRRDMDRHCITDCPMKHVSCPFSSIGCASSIPRARLEQHKLENVRDHVLSILQSIHKKASTEDLKHRVDQLIELSSPEQLAKPQNVRPLTTLIKNLEAKLGPLEVMPKTTSSEE---IPSQNEGSTDSPKTKEEHVESSNTMEVRTQPPPENKTNDSPIKHIDSPQSSTMHSPARTEEFEDSPTKGSSMQSPAKEQHLAGSSDGNDDQGKNNELMDSPTKDRTRELPAEEKHPVESSVVAEHVPAAKSEEHNVSL-DRESPSAND----LSTGQAKMDIPMDSAKNDSTRESPAEEYPVDSSTVAKDLADSPTKIEEHKESSERSSLSGNDISTSPA 564
M+ P ++ + FE+ KE GP+ HC+LFD E+ HKIA+AFLPGLASAC+DNT GGLFKSP SVAV IRKEMV+ L QRSETFVAE+V+LEG E +V HP+DIISDF+DDF+SSK NFFSRVSGW+LS+ RED+ID+F QEME+NGFW ++RRE++AQ LLKNVDFK+ FHC+ KFN A+E+ EH QC FRT++C NEGC+ +F A + H+++CPFK+LPCEQ C + +MRR+MD+HCIT CPMK V+CPF +GC S+IP A +EQH+LEN+ HVL ILQ IHK A E+LK RVDQL E SP +L++ ++VR LT IK+LEA++GP++V EE P++NE T+ KEE V+SS E H DSP + G + ++ SS G + E +SP + +EL ++ SS E + K +E L ESP+ + L T + K + P S K + + ES E+ ++ A SPTK+EEH ES + + D S PA
Sbjct: 9 MNLPANGVEVKPETFEQEKEAGPLLHCDLFDTEIVHKIAQAFLPGLASACVDNTTGGLFKSPASVAVDIRKEMVEYLTQRSETFVAESVILEGGPEAQVSVHPYDIISDFVDDFSSSKRNFFSRVSGWVLSERREDRIDDFVQEMELNGFWFMERREAIAQNLLKNVDFKNTFHCDMKFNYAEEVAEHSLQCNFRTMNCTNEGCNARFCASHLVDHESICPFKILPCEQQCPDRIMRREMDKHCITVCPMKLVNCPFYPVGCQSTIPLATIEQHRLENLHAHVLYILQVIHKDAPLENLKKRVDQLKEADSPGRLSEARDVRLLTFAIKDLEAEIGPIKVDNNIKIVEEHPESPNKNEECTELVTNKEEGVDSSTRKE-----------------HKDSPNKN-----------------GEFTELVTNKEESVDSSTGEE------EPKESPDNEERKELVTNKEESKNSSTREEGKESPKKKEECTKLPSEESPTKKEVHFELPTREEKWNDP--SIKGEESSESAIEK---------EERAKSPTKMEEHGESPAKKEVHAEDSSNLPA 529
BLAST of XM_017367834.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9T925 ((uncharacterized protein LOC105162468 isoform X2 {ECO:0000313|RefSeq:XP_011078790.1}))
HSP 1 Score: 486.878 bits (1252), Expect = 1.106e-164
Identity = 234/410 (57.07%), Postives = 299/410 (72.93%), Query Frame = 0
Match: A0A6I9T925 ((uncharacterized protein LOC105162468 isoform X2 {ECO:0000313|RefSeq:XP_011078790.1}))
HSP 1 Score: 486.878 bits (1252), Expect = 1.106e-164
Identity = 234/410 (57.07%), Postives = 299/410 (72.93%), Query Frame = 0
Query: 1 MDPPPTDGGIERDNFEEVKEGGPMHHCNLFDAEVTHKIAEAFLPGLASACIDNTLGGLFKSPGSVAVAIRKEMVDALIQRSETFVAEAVVLEGEAETEVPEHPFDIISDFIDDFASSKNNFFSRVSGWMLSDMREDKIDEFAQEMEINGFWMIDRRESVAQTLLKNVDFKDAFHCNKKFNTADELVEHLPQCRFRTIHCPNEGCDDQFSAGNSEIHDAVCPFKMLPCEQNCSEILMRRDMDRHCITDCPMKHVSCPFSSIGCASSIPRARLEQHKLENVRDHVLSILQSIHKKASTEDLKHRVDQLIELSSPEQLAKPQNVRPLTTLIKNLEAKLGPLEVMPKTTSSEEIPSQNEGSTDSPKTKEEHV--ESSNTMEVRT-QPPPENKTNDSPI----KHIDSPQSSTMH 403
M+PP D ++ + E+ KEGG HC+L+D ++ HKIA+ FLPGLASAC+DNT GGLF+SP SVAV IR+EMVD L+QRSE FVAE+VVLEG EVPE P DII++F+DDFASSK NFFSRVSGW+LSD REDKID+F QEMEINGFW+++RRE+VAQTLLKNVDFK+ +HCN F T ++L +H C FRT+ C NEGC +F A S+ HD+VCPFK+L CEQNCS I+MRR+MDRHCIT CPMK V CPF S+GC SSIP+ + QHK E++R H+L +LQ IHK A+ EDLK RVD+LIELSS +LA ++ R LT+ IK LEAKLGPL+V S+E+ + +S + +HV E S ++ + PP+N + P K ++SP S ++
Sbjct: 1 MNPPADDVDLKPEKLEQEKEGGASFHCDLYDEDLVHKIAQEFLPGLASACVDNTTGGLFRSPASVAVEIRREMVDYLVQRSENFVAESVVLEGVPNAEVPEDPHDIIANFVDDFASSKRNFFSRVSGWLLSDKREDKIDDFVQEMEINGFWLLNRREAVAQTLLKNVDFKNIYHCNMSFKTEEDLEDHKLNCGFRTMTCINEGCSSRFCAAQSDHHDSVCPFKILKCEQNCSAIIMRREMDRHCITVCPMKLVKCPFHSVGCQSSIPQCTVGQHKSEDLRSHLLYVLQVIHKDAAVEDLKERVDELIELSSG-KLAGARDARSLTSAIKGLEAKLGPLKVKTTAKGSDEVGDLTDKKDESSGSPTKHVRFEESPVAKIESVNSPPKNSDGNDPNQEREKSVESPASISVQ 409
BLAST of XM_017367834.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834GBH7 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7129014.1}))
HSP 1 Score: 485.723 bits (1249), Expect = 2.243e-164
Identity = 274/568 (48.24%), Postives = 367/568 (64.61%), Query Frame = 0
Match: A0A834GBH7 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7129014.1}))
HSP 1 Score: 485.723 bits (1249), Expect = 2.243e-164
Identity = 274/568 (48.24%), Postives = 367/568 (64.61%), Query Frame = 0
Query: 1 MDPPPTDGGIERDNFEEVKEGGPMHHCNLFDAEVTHKIAEAFLPGLASACIDNTLGGLFKSPGSVAVAIRKEMVDALIQRSETFVAEAVVLEGEAETEVPEHPFDIISDFIDDFASSKNNFFSRVSGWMLSDMREDKIDEFAQEMEINGFWMIDRRESVAQTLLKNVDFKDAFHCNKKFNTADELVEHLPQCRFRTIHCPNEGCDDQFSAGNSEIHDAVCPFKMLPCEQNCSEILMRRDMDRHCITDCPMKHVSCPFSSIGCASSIPRARLEQHKLENVRDHVLSILQSIHKKASTEDLKHRVDQLIELSSPEQLAKPQNVRPLTTLIKNLEAKLGPLEVMPKTTSSE---EIPSQNEGSTDSPKTKEEHVESSNTMEVRTQPPPENKTNDSPIKHIDSPQSSTMHSPARTEEFEDSPTKGSS-MQSPAKEQHLAGSSDGNDDQGKNNELMDSPTKDRTRELPAEEKHPVESSVVAEHVPAAKSEEHNVSLDRESPSAN----DLSTGQAKMDIPMDSAKNDSTRESPAEEYPVDSSTVAKDLADSPTKIEEHKESSERSSLSGNDIS 560
M+ P ++ + FE+ K+ GP+ HC+LFD E+ HKIA+AFLPGLASAC+DNT GGLFKSP SVAV IRKEMV+ L QRSE FVAE+V+LEG E +V HP+DIISDF+DDFASSK NFFSRVSGW+LS+ RED+ID+F QEME+NGFW ++RRE++AQ LLKNVDFK+ FHC+ KFN A+EL EH +C FRT++C NEGC+ +F A +S H+++CPFK+LPCEQ C + +MRR+MD+HCIT CPMK V+CPF +GC S+IP A +EQH+LEN+ HVL ILQ IHK A E+LK RVDQL E SP +L++ ++VR LT IK+LE ++GP++V E E P++NE T+ KEE V+SS +R E + DSP K+ + + T EE DS T+G +SP E+ + N ++ KN SPT++ +E P ++ E SEE +ESP+ +L T + K + P S K + + ES E+ ++ SPTK+EEH ES + + D S
Sbjct: 1 MNLPANGVEVKPETFEQEKDAGPLLHCDLFDTEIIHKIAQAFLPGLASACVDNTTGGLFKSPASVAVDIRKEMVEYLTQRSENFVAESVILEGGPEAQVSVHPYDIISDFVDDFASSKRNFFSRVSGWVLSERREDRIDDFVQEMELNGFWFMERREAIAQNLLKNVDFKNTFHCDMKFNCAEELAEHSLRCNFRTMNCTNEGCNARFCASHSVDHESICPFKILPCEQQCPDRIMRREMDKHCITVCPMKLVNCPFYPVGCQSTIPLATIEQHRLENLHAHVLYILQVIHKDAPLENLKKRVDQLKEADSPGRLSEARDVRLLTFAIKDLEKEIGPIKVDNNIKIFEERPESPNKNEECTELVTNKEEGVDSS----IR-----EEEHKDSPNKNEECTELVT-----NKEESVDSSTRGEEPKESPNNEERKELVT--NKEESKN-----SPTREGGKESPKKK----------EECTKLPSEEER---SKESPTIKEVHFELPTREEKWNDP--SIKGEESSESAIEK---------EERTKSPTKMEEHGESPAKKEVHAEDSS 523
BLAST of XM_017367834.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9T4N7 ((uncharacterized protein LOC105162468 isoform X1 {ECO:0000313|RefSeq:XP_011078789.2}))
HSP 1 Score: 486.493 bits (1251), Expect = 2.770e-164
Identity = 234/410 (57.07%), Postives = 299/410 (72.93%), Query Frame = 0
Match: A0A6I9T4N7 ((uncharacterized protein LOC105162468 isoform X1 {ECO:0000313|RefSeq:XP_011078789.2}))
HSP 1 Score: 486.493 bits (1251), Expect = 2.770e-164
Identity = 234/410 (57.07%), Postives = 299/410 (72.93%), Query Frame = 0
Query: 1 MDPPPTDGGIERDNFEEVKEGGPMHHCNLFDAEVTHKIAEAFLPGLASACIDNTLGGLFKSPGSVAVAIRKEMVDALIQRSETFVAEAVVLEGEAETEVPEHPFDIISDFIDDFASSKNNFFSRVSGWMLSDMREDKIDEFAQEMEINGFWMIDRRESVAQTLLKNVDFKDAFHCNKKFNTADELVEHLPQCRFRTIHCPNEGCDDQFSAGNSEIHDAVCPFKMLPCEQNCSEILMRRDMDRHCITDCPMKHVSCPFSSIGCASSIPRARLEQHKLENVRDHVLSILQSIHKKASTEDLKHRVDQLIELSSPEQLAKPQNVRPLTTLIKNLEAKLGPLEVMPKTTSSEEIPSQNEGSTDSPKTKEEHV--ESSNTMEVRT-QPPPENKTNDSPI----KHIDSPQSSTMH 403
M+PP D ++ + E+ KEGG HC+L+D ++ HKIA+ FLPGLASAC+DNT GGLF+SP SVAV IR+EMVD L+QRSE FVAE+VVLEG EVPE P DII++F+DDFASSK NFFSRVSGW+LSD REDKID+F QEMEINGFW+++RRE+VAQTLLKNVDFK+ +HCN F T ++L +H C FRT+ C NEGC +F A S+ HD+VCPFK+L CEQNCS I+MRR+MDRHCIT CPMK V CPF S+GC SSIP+ + QHK E++R H+L +LQ IHK A+ EDLK RVD+LIELSS +LA ++ R LT+ IK LEAKLGPL+V S+E+ + +S + +HV E S ++ + PP+N + P K ++SP S ++
Sbjct: 16 MNPPADDVDLKPEKLEQEKEGGASFHCDLYDEDLVHKIAQEFLPGLASACVDNTTGGLFRSPASVAVEIRREMVDYLVQRSENFVAESVVLEGVPNAEVPEDPHDIIANFVDDFASSKRNFFSRVSGWLLSDKREDKIDDFVQEMEINGFWLLNRREAVAQTLLKNVDFKNIYHCNMSFKTEEDLEDHKLNCGFRTMTCINEGCSSRFCAAQSDHHDSVCPFKILKCEQNCSAIIMRREMDRHCITVCPMKLVKCPFHSVGCQSSIPQCTVGQHKSEDLRSHLLYVLQVIHKDAAVEDLKERVDELIELSSG-KLAGARDARSLTSAIKGLEAKLGPLKVKTTAKGSDEVGDLTDKKDESSGSPTKHVRFEESPVAKIESVNSPPKNSDGNDPNQEREKSVESPASISVQ 424
| Match Name | Stats | Description |
|---|---|---|
| A0A5J4ZM85 | E-Value: 1.097e-178, PID: 55.51 | TRAF-type domain-containing protein {ECO:0000259|P... [more] |
| A0A7J7GPE3 | E-Value: 2.930e-172, PID: 57.60 | TRAF-type domain-containing protein {ECO:0000259|P... [more] |
| A0A2G9GR92 | E-Value: 3.941e-169, PID: 46.73 | (Homogentisate solanesyltransferase {ECO:0000313|E... [more] |
| A0A7J0E2S2 | E-Value: 5.652e-166, PID: 56.48 | (TRAF-like superfamily protein {ECO:0000313|EMBL:G... [more] |
| A0A7J7GKS3 | E-Value: 6.156e-166, PID: 53.42 | TRAF-type domain-containing protein {ECO:0000259|P... [more] |
| A0A2R6S209 | E-Value: 1.214e-165, PID: 52.16 | (TNF receptor-associated factor like {ECO:0000313|... [more] |
| A0A6A4KW81 | E-Value: 4.127e-165, PID: 47.20 | TRAF-type domain-containing protein {ECO:0000259|P... [more] |
| A0A6I9T925 | E-Value: 1.106e-164, PID: 57.07 | (uncharacterized protein LOC105162468 isoform X2 {... [more] |
| A0A834GBH7 | E-Value: 2.243e-164, PID: 48.24 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7129... [more] |
| A0A6I9T4N7 | E-Value: 2.770e-164, PID: 57.07 | (uncharacterized protein LOC105162468 isoform X1 {... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |