Resource Type:
Polypeptide
Name:
XM_017367496.1
Identifier:
XM_017367496.1-protein
Sequence:
MLEDRSCLVSRSYSRTYERENSWVCMNYSLDKIEIQNGKRPLESNGDEES
EARKFPKQQTNSYESNDSTVTLLDLSMTSTTDQSSDHGDTGDYSDSSSLI
HGIGRDNSISSLIRSSRSDYGSIASLNRSFRDLIRSGLLYRLRRQNRVVE
HWIYFSCQLLGWEAFDPARLKWMRLPTMTSDECFMFSDKESLGVGTELLV
FGKVFLSHVIFRYSLLTNTWSSGMTMNFPRCLFGSASMGELAILAGGCDL
SGKTLSVAELYNSERGTWEVLPDMNKPRKLCSAVFMDEKYYVIGGVGGSQ
SKVLTCGEEYNLQTRTWTEIPNMSPVRTRQATEGGMPVTAEAPPLVAVVN
NELYAADYAEMEVRKYDKNRKVWETVGRLPERADSMNGWGLAFRACGDRL
IVIGGPRAQGEGFIEINAWAPKDGPPHWNLLGRKQSGSFVYNCAVMGC
Sequence Length:
448
Sequence Checksum:
095c1cc3ee1b15ec896dbbb60a0fe383
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017367496.1, derives from mRNA, XM_017367496.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017367496.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017367496.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AEH9 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8529445.1}))
HSP 1 Score: 664.455 bits (1713), Expect = 0.000e+0
Identity = 327/448 (72.99%), Postives = 367/448 (81.92%), Query Frame = 0
Match: A0A5J5AEH9 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8529445.1}))
HSP 1 Score: 664.455 bits (1713), Expect = 0.000e+0
Identity = 327/448 (72.99%), Postives = 367/448 (81.92%), Query Frame = 0
Query: 1 MLEDRSCLVSRSYSRTYERENSWVCMNYSLDKIEIQNGKRPLESNGDEESEARKFPKQQTNSYESNDSTVTLLDLSMTSTTDQSSDHGDTGDYSDSSSLIHGIGRDNSISSLIRSSRSDYGSIASLNRSFRDLIRSGLLYRLRRQNRVVEHWIYFSCQLLGWEAFDPARLKWMRLPTMTSDECFMFSDKESLGVGTELLVFGKVFLSHVIFRYSLLTNTWSSGMTMNFPRCLFGSASMGELAILAGGCDLSGKTLSVAELYNSERGTWEVLPDMNKPRKLCSAVFMDEKYYVIGGVGGSQSKVLTCGEEYNLQTRTWTEIPNMSPVRTRQATEGGMPVTAEAPPLVAVVNNELYAADYAEMEVRKYDKNRKVWETVGRLPERADSMNGWGLAFRACGDRLIVIGGPRAQGEGFIEINAWAPKDGPPHWNLLGRKQSGSFVYNCAVMGC 448
MLEDR+CL+SR Y RT ER+N+W CMNY L+K RPLE +GDEE RK KQ + E + T+TL S TS TDQS + GD SDS LIH IGRDNSISSLIR SRSDYGS+ASLNRSFR LIRSG LYRLRRQN V+EHW+YFSC+LL WEAFDP RL+WMRLPTM S++CFM SDKESL VGT+LLVFGK +S VI+RYS+LTNTWSSGM+MN PRCLFGSAS+ E+AILAGGCD G LS AELYNSE+GTW LP+M+K RK+CSAVFMD K+YVIGG+GGS SK+LTCGEEYNL T WTEIPNMSPVR A E MP TAEAPPLVAVV+NELYAADYA MEVRKY+K+RK W TVGRLPERA SMNGWGLAFRACG++LIVIGGPRA GEGFIE+N+W P +GPP WNLLGRKQSG+FVYNCAVMGC
Sbjct: 1 MLEDRACLISRGYPRTCERDNNWTCMNYRLEK-------RPLEIDGDEELGVRKLSKQSA-ARERVELTLTLRPAS-TSPTDQSENQCQAGDNSDSDPLIHLIGRDNSISSLIRLSRSDYGSVASLNRSFRSLIRSGELYRLRRQNGVIEHWVYFSCRLLEWEAFDPNRLRWMRLPTMPSNDCFMCSDKESLAVGTDLLVFGKEMMSQVIYRYSILTNTWSSGMSMNTPRCLFGSASLREIAILAGGCDPEGNILSSAELYNSEKGTWVTLPNMHKTRKMCSAVFMDGKFYVIGGIGGSDSKLLTCGEEYNLVTDCWTEIPNMSPVRNGAAREIEMPATAEAPPLVAVVDNELYAADYAHMEVRKYEKDRKEWVTVGRLPERAGSMNGWGLAFRACGNQLIVIGGPRALGEGFIEVNSWVPSEGPPQWNLLGRKQSGNFVYNCAVMGC 439
BLAST of XM_017367496.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7WTL9 ((F-box/kelch-repeat protein SKIP11-like {ECO:0000313|RefSeq:XP_009778034.1, ECO:0000313|RefSeq:XP_009778035.1}))
HSP 1 Score: 663.685 bits (1711), Expect = 0.000e+0
Identity = 323/449 (71.94%), Postives = 367/449 (81.74%), Query Frame = 0
Match: A0A1U7WTL9 ((F-box/kelch-repeat protein SKIP11-like {ECO:0000313|RefSeq:XP_009778034.1, ECO:0000313|RefSeq:XP_009778035.1}))
HSP 1 Score: 663.685 bits (1711), Expect = 0.000e+0
Identity = 323/449 (71.94%), Postives = 367/449 (81.74%), Query Frame = 0
Query: 1 MLEDRSCLVSRSYSRTYERENSWV-CMNYSLDKIEIQNGKRPLESNGDEESEARKFPKQQTNSYESNDSTVTLLDLSMTSTTDQSSDHGDTGDYSDSSSLIHGIGRDNSISSLIRSSRSDYGSIASLNRSFRDLIRSGLLYRLRRQNRVVEHWIYFSCQLLGWEAFDPARLKWMRLPTMTSDECFMFSDKESLGVGTELLVFGKVFLSHVIFRYSLLTNTWSSGMTMNFPRCLFGSASMGELAILAGGCDLSGKTLSVAELYNSERGTWEVLPDMNKPRKLCSAVFMDEKYYVIGGVGGSQSKVLTCGEEYNLQTRTWTEIPNMSPVRTRQATEGGMPVTAEAPPLVAVVNNELYAADYAEMEVRKYDKNRKVWETVGRLPERADSMNGWGLAFRACGDRLIVIGGPRAQGEGFIEINAWAPKDGPPHWNLLGRKQSGSFVYNCAVMGC 448
MLEDRSCLVSR Y RT E++W CM+Y LD+IE+Q+GKRPLE++ + E K PKQ ++++ + L S S +Q+ + GD SDSSSLIH IGRDNSIS LIR SRSDYG+IASLN SFR LIR+G LYRLRRQN VVEHW+YFSCQLL WEAFDP R +WM LPTM +ECF+FSDKESL VGTELLVFGK L+HVI+RYSLLTNTWSSGM MN PRCLFGSAS+GE+AILAGGCD G LS AELYNSE GTW+ LP MNKPRK+CS VFMD K+YVIGG+GG++SK+LTCGEEY+L+T TWTEIPNMSPVRT MP T+EAPPLVAVVNNELYAADYA+MEVRKYDK K W T+GRLPERA SMNGWGLAFRACGDRLIVIGGPRA GEG+IE+N+W P +GPP WNLLGRK+SGSFVYNCAVMGC
Sbjct: 1 MLEDRSCLVSRDY-RT---ESNWAACMSYRLDRIEVQHGKRPLENDEESEHVQCKLPKQ-SDAFNRVEGVALSLGNSSASPDEQADNQRHAGDNSDSSSLIHAIGRDNSISCLIRCSRSDYGAIASLNSSFRSLIRNGELYRLRRQNGVVEHWVYFSCQLLEWEAFDPTRRRWMHLPTMNPNECFVFSDKESLAVGTELLVFGKEVLAHVIYRYSLLTNTWSSGMQMNAPRCLFGSASLGEIAILAGGCDSQGSILSSAELYNSEAGTWKTLPSMNKPRKMCSGVFMDRKFYVIGGIGGAESKLLTCGEEYDLETGTWTEIPNMSPVRT---ARNDMPATSEAPPLVAVVNNELYAADYADMEVRKYDKQNKEWVTIGRLPERAASMNGWGLAFRACGDRLIVIGGPRAIGEGYIEVNSWVPSEGPPQWNLLGRKRSGSFVYNCAVMGC 441
BLAST of XM_017367496.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7WF06 ((F-box/kelch-repeat protein SKIP11-like {ECO:0000313|RefSeq:XP_009775831.1}))
HSP 1 Score: 660.218 bits (1702), Expect = 0.000e+0
Identity = 318/449 (70.82%), Postives = 363/449 (80.85%), Query Frame = 0
Match: A0A1U7WF06 ((F-box/kelch-repeat protein SKIP11-like {ECO:0000313|RefSeq:XP_009775831.1}))
HSP 1 Score: 660.218 bits (1702), Expect = 0.000e+0
Identity = 318/449 (70.82%), Postives = 363/449 (80.85%), Query Frame = 0
Query: 1 MLEDRSCLVSRSYSRTYERENSWV-CMNYSLDKIEIQNGKRPLESNGDEESEARKFPKQQTNSYESNDSTVTLLDLSMTSTTDQSSDHGDTGDYSDSSSLIHGIGRDNSISSLIRSSRSDYGSIASLNRSFRDLIRSGLLYRLRRQNRVVEHWIYFSCQLLGWEAFDPARLKWMRLPTMTSDECFMFSDKESLGVGTELLVFGKVFLSHVIFRYSLLTNTWSSGMTMNFPRCLFGSASMGELAILAGGCDLSGKTLSVAELYNSERGTWEVLPDMNKPRKLCSAVFMDEKYYVIGGVGGSQSKVLTCGEEYNLQTRTWTEIPNMSPVRTRQATEGGMPVTAEAPPLVAVVNNELYAADYAEMEVRKYDKNRKVWETVGRLPERADSMNGWGLAFRACGDRLIVIGGPRAQGEGFIEINAWAPKDGPPHWNLLGRKQSGSFVYNCAVMGC 448
MLEDRSCLV R + R E++W CMNYSLD+IEIQ+GKRPLE+N + E RK PK+ S N+ V L + S D++S+ D S+SSSLI IGRDNSIS LI SRSDYG+IASLN SF LIRSG LYRLRRQ+ VVEHW+YFSCQLL WEAFDP+R +WM LP+M +ECF+FSDKESL VGTELLVFGK LSHVI+RYS+LTNTWSSGM MN PRCLFGSAS+GE+AIL GGCD G LS AELYNSE G W+ LP MNKPRK+CSAVFMD K+YVIGG+GG++SK+LTCGEEY+L+T WTEIP+MSPVR +A + MP T+EAPPLVAVVNNELYAADYA+MEVRKYDK K W T+GRLPERA SMNGWGLAFRACGDRLIVIGGPRA GEG IE+N+W P +GPP WNLLGRK+SGSFVYNCAVMGC
Sbjct: 1 MLEDRSCLVPRDFPR----ESNWAACMNYSLDRIEIQHGKRPLENNHENEVVQRKLPKR---SVALNEEVVISLGDASVSPADEASNQRHAADNSESSSLILAIGRDNSISCLIHCSRSDYGAIASLNSSFHSLIRSGELYRLRRQHGVVEHWVYFSCQLLEWEAFDPSRRRWMHLPSMNPNECFVFSDKESLAVGTELLVFGKEILSHVIYRYSILTNTWSSGMQMNAPRCLFGSASLGEIAILTGGCDSQGNILSSAELYNSETGRWKTLPSMNKPRKMCSAVFMDRKFYVIGGIGGTESKLLTCGEEYDLETGKWTEIPSMSPVRAGEARDDNMPATSEAPPLVAVVNNELYAADYADMEVRKYDKQNKTWVTIGRLPERAGSMNGWGLAFRACGDRLIVIGGPRAMGEGIIEVNSWVPSEGPPQWNLLGRKRSGSFVYNCAVMGC 442
BLAST of XM_017367496.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1J6HSM3 ((F-boxkelch-repeat protein skip11 {ECO:0000313|EMBL:OIS95916.1}))
HSP 1 Score: 660.218 bits (1702), Expect = 0.000e+0
Identity = 322/449 (71.71%), Postives = 364/449 (81.07%), Query Frame = 0
Match: A0A1J6HSM3 ((F-boxkelch-repeat protein skip11 {ECO:0000313|EMBL:OIS95916.1}))
HSP 1 Score: 660.218 bits (1702), Expect = 0.000e+0
Identity = 322/449 (71.71%), Postives = 364/449 (81.07%), Query Frame = 0
Query: 1 MLEDRSCLVSRSYSRTYERENSWV-CMNYSLDKIEIQNGKRPLESNGDEESEARKFPKQQTNSYESNDSTVTLLDLSMTSTTDQSSDHGDTGDYSDSSSLIHGIGRDNSISSLIRSSRSDYGSIASLNRSFRDLIRSGLLYRLRRQNRVVEHWIYFSCQLLGWEAFDPARLKWMRLPTMTSDECFMFSDKESLGVGTELLVFGKVFLSHVIFRYSLLTNTWSSGMTMNFPRCLFGSASMGELAILAGGCDLSGKTLSVAELYNSERGTWEVLPDMNKPRKLCSAVFMDEKYYVIGGVGGSQSKVLTCGEEYNLQTRTWTEIPNMSPVRTRQATEGGMPVTAEAPPLVAVVNNELYAADYAEMEVRKYDKNRKVWETVGRLPERADSMNGWGLAFRACGDRLIVIGGPRAQGEGFIEINAWAPKDGPPHWNLLGRKQSGSFVYNCAVMGC 448
MLEDRSCLVSR Y RT E++W CM+Y LD+IE+Q GKRPLE++ + E K PK ++++ L S S +Q+ + GD SDSSSLIH IGRDNSIS LI SRSDYG+IASLNRSFR LIRSG LYRLRRQN VVEHW+YFSCQLL WEAFDP R +WM LPTM +ECF+FSDKESL VGTELLVFGK L+HVI+RYSLLTNTWSSGM MN PRCLFGSAS+GE+AILAGGCD G LS AELYNSE GTW+ LP MNKPRK+CS VFMD K+YVIGG+GG++SK+LTCGEEY+L+T TWTEIPNMSPVRT MP T+EAPPLVAVVNNELYAADYA+MEVRKY+K K W T+GRLPERA SMNGWGLAFRACGDRLIVIGGPRA GEG+IE+N+W P +GPP WNLLGRK+SGSFVYNCAVMGC
Sbjct: 1 MLEDRSCLVSRDY-RT---ESNWAACMSYRLDRIEVQRGKRPLENDEESEQVQCKLPKH-SDAFNRVGGVALSLGNSSASPDEQAGNQRHAGDNSDSSSLIHAIGRDNSISCLIHCSRSDYGAIASLNRSFRSLIRSGELYRLRRQNGVVEHWVYFSCQLLEWEAFDPTRRRWMHLPTMNPNECFVFSDKESLAVGTELLVFGKEVLAHVIYRYSLLTNTWSSGMQMNAPRCLFGSASLGEIAILAGGCDSQGSILSSAELYNSEAGTWKTLPSMNKPRKMCSGVFMDRKFYVIGGIGGAESKLLTCGEEYDLETGTWTEIPNMSPVRT---ARNDMPATSEAPPLVAVVNNELYAADYADMEVRKYNKQSKEWVTIGRLPERAASMNGWGLAFRACGDRLIVIGGPRAIGEGYIEVNSWVPSEGPPQWNLLGRKRSGSFVYNCAVMGC 441
BLAST of XM_017367496.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S3XX22 ((F-box/kelch-repeat protein SKIP11-like {ECO:0000313|RefSeq:XP_016444486.1}))
HSP 1 Score: 660.218 bits (1702), Expect = 0.000e+0
Identity = 318/449 (70.82%), Postives = 363/449 (80.85%), Query Frame = 0
Match: A0A1S3XX22 ((F-box/kelch-repeat protein SKIP11-like {ECO:0000313|RefSeq:XP_016444486.1}))
HSP 1 Score: 660.218 bits (1702), Expect = 0.000e+0
Identity = 318/449 (70.82%), Postives = 363/449 (80.85%), Query Frame = 0
Query: 1 MLEDRSCLVSRSYSRTYERENSWV-CMNYSLDKIEIQNGKRPLESNGDEESEARKFPKQQTNSYESNDSTVTLLDLSMTSTTDQSSDHGDTGDYSDSSSLIHGIGRDNSISSLIRSSRSDYGSIASLNRSFRDLIRSGLLYRLRRQNRVVEHWIYFSCQLLGWEAFDPARLKWMRLPTMTSDECFMFSDKESLGVGTELLVFGKVFLSHVIFRYSLLTNTWSSGMTMNFPRCLFGSASMGELAILAGGCDLSGKTLSVAELYNSERGTWEVLPDMNKPRKLCSAVFMDEKYYVIGGVGGSQSKVLTCGEEYNLQTRTWTEIPNMSPVRTRQATEGGMPVTAEAPPLVAVVNNELYAADYAEMEVRKYDKNRKVWETVGRLPERADSMNGWGLAFRACGDRLIVIGGPRAQGEGFIEINAWAPKDGPPHWNLLGRKQSGSFVYNCAVMGC 448
MLEDRSCLV R + R E++W CMNYSLD+IEIQ+GKRPLE+N + E RK PK+ S N+ V L + S D++S+ D S+SSSLI IGRDNSIS LI SRSDYG+IASLN SF LIRSG LYRLRRQ+ VVEHW+YFSCQLL WEAFDP+R +WM LP+M +ECF+FSDKESL VGTELLVFGK LSHVI+RYS+LTNTWSSGM MN PRCLFGSAS+GE+AIL GGCD G LS AELYNSE G W+ LP MNKPRK+CSAVFMD K+YVIGG+GG++SK+LTCGEEY+L+T WTEIP+MSPVR +A + MP T+EAPPLVAVVNNELYAADYA+MEVRKYDK K W T+GRLPERA SMNGWGLAFRACGDRLIVIGGPRA GEG IE+N+W P +GPP WNLLGRK+SGSFVYNCAVMGC
Sbjct: 1 MLEDRSCLVPRDFPR----ESNWAACMNYSLDRIEIQHGKRPLENNHENEVVQRKLPKR---SVALNEEVVISLGDASVSPADEASNQRHAADNSESSSLILAIGRDNSISCLIHCSRSDYGAIASLNSSFHSLIRSGELYRLRRQHGVVEHWVYFSCQLLEWEAFDPSRRRWMHLPSMNPNECFVFSDKESLAVGTELLVFGKEILSHVIYRYSILTNTWSSGMQMNAPRCLFGSASLGEIAILTGGCDSQGNILSSAELYNSETGRWKTLPSMNKPRKMCSAVFMDRKFYVIGGIGGTESKLLTCGEEYDLETGKWTEIPSMSPVRAGEARDDNMPATSEAPPLVAVVNNELYAADYADMEVRKYDKQNKTWVTIGRLPERAGSMNGWGLAFRACGDRLIVIGGPRAMGEGIIEVNSWVPSEGPPQWNLLGRKRSGSFVYNCAVMGC 442
BLAST of XM_017367496.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1J6IYG9 ((F-boxkelch-repeat protein skip11 {ECO:0000313|EMBL:OIT05592.1}))
HSP 1 Score: 659.448 bits (1700), Expect = 0.000e+0
Identity = 317/449 (70.60%), Postives = 362/449 (80.62%), Query Frame = 0
Match: A0A1J6IYG9 ((F-boxkelch-repeat protein skip11 {ECO:0000313|EMBL:OIT05592.1}))
HSP 1 Score: 659.448 bits (1700), Expect = 0.000e+0
Identity = 317/449 (70.60%), Postives = 362/449 (80.62%), Query Frame = 0
Query: 1 MLEDRSCLVSRSYSRTYERENSWV-CMNYSLDKIEIQNGKRPLESNGDEESEARKFPKQQTNSYESNDSTVTLLDLSMTSTTDQSSDHGDTGDYSDSSSLIHGIGRDNSISSLIRSSRSDYGSIASLNRSFRDLIRSGLLYRLRRQNRVVEHWIYFSCQLLGWEAFDPARLKWMRLPTMTSDECFMFSDKESLGVGTELLVFGKVFLSHVIFRYSLLTNTWSSGMTMNFPRCLFGSASMGELAILAGGCDLSGKTLSVAELYNSERGTWEVLPDMNKPRKLCSAVFMDEKYYVIGGVGGSQSKVLTCGEEYNLQTRTWTEIPNMSPVRTRQATEGGMPVTAEAPPLVAVVNNELYAADYAEMEVRKYDKNRKVWETVGRLPERADSMNGWGLAFRACGDRLIVIGGPRAQGEGFIEINAWAPKDGPPHWNLLGRKQSGSFVYNCAVMGC 448
MLEDRSCLV R + R E++W CMNYSLD+IE+Q+GKRPLE+N + E RK PK+ S N+ V L + S D++S+ D SDSSSLI IGRDNSIS LI SRSDYG+IASLN SF L+RSG LYRLRRQ VVEHW+YFSCQLL WEAFDP+R +WM LP+M +ECF+FSDKESL VGTELLVFGK LSHVI+RYS+LTNTWSSGM MN PRCLFGSAS+GE+AIL GGCD G LS AELYNSE G W+ LP MNKPRK+CSAVFMD K+YVIGG+GG++SK+LTCGEEY+L+T WTEIP+MSPVR +A + MP T+EAPPLVAVVNNELYAADYA+MEVRKYDK K W T+GRLPERA SMNGWGLAFRACGDRLIVIGGPRA GEG IE+N+W P +GPP WNLLGRK+SGSFVYNCAVMGC
Sbjct: 1 MLEDRSCLVPRDFPR----ESNWAACMNYSLDRIEVQHGKRPLENNHENEVVQRKLPKR---SVALNEEVVISLGDASVSPADEASNQRHAADNSDSSSLIPAIGRDNSISCLIHCSRSDYGAIASLNSSFHSLVRSGELYRLRRQYGVVEHWVYFSCQLLEWEAFDPSRRRWMHLPSMNPNECFVFSDKESLAVGTELLVFGKEILSHVIYRYSILTNTWSSGMQMNAPRCLFGSASLGEIAILTGGCDSQGNILSSAELYNSETGRWKTLPSMNKPRKMCSAVFMDRKFYVIGGIGGTESKLLTCGEEYDLETGKWTEIPSMSPVRAGEARDDNMPATSEAPPLVAVVNNELYAADYADMEVRKYDKKNKAWVTIGRLPERAGSMNGWGLAFRACGDRLIVIGGPRAMGEGIIEVNSWVPSEGPPQWNLLGRKRSGSFVYNCAVMGC 442
BLAST of XM_017367496.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S4DJH8 ((F-box/kelch-repeat protein SKIP11-like {ECO:0000313|RefSeq:XP_016513438.1, ECO:0000313|RefSeq:XP_016513439.1}))
HSP 1 Score: 659.062 bits (1699), Expect = 0.000e+0
Identity = 318/449 (70.82%), Postives = 362/449 (80.62%), Query Frame = 0
Match: A0A1S4DJH8 ((F-box/kelch-repeat protein SKIP11-like {ECO:0000313|RefSeq:XP_016513438.1, ECO:0000313|RefSeq:XP_016513439.1}))
HSP 1 Score: 659.062 bits (1699), Expect = 0.000e+0
Identity = 318/449 (70.82%), Postives = 362/449 (80.62%), Query Frame = 0
Query: 1 MLEDRSCLVSRSYSRTYERENSWV-CMNYSLDKIEIQNGKRPLESNGDEESEARKFPKQQTNSYESNDSTVTLLDLSMTSTTDQSSDHGDTGDYSDSSSLIHGIGRDNSISSLIRSSRSDYGSIASLNRSFRDLIRSGLLYRLRRQNRVVEHWIYFSCQLLGWEAFDPARLKWMRLPTMTSDECFMFSDKESLGVGTELLVFGKVFLSHVIFRYSLLTNTWSSGMTMNFPRCLFGSASMGELAILAGGCDLSGKTLSVAELYNSERGTWEVLPDMNKPRKLCSAVFMDEKYYVIGGVGGSQSKVLTCGEEYNLQTRTWTEIPNMSPVRTRQATEGGMPVTAEAPPLVAVVNNELYAADYAEMEVRKYDKNRKVWETVGRLPERADSMNGWGLAFRACGDRLIVIGGPRAQGEGFIEINAWAPKDGPPHWNLLGRKQSGSFVYNCAVMGC 448
MLEDRSCLV R + R E++W CMNYSLD+IE+Q+GKRPLE+N + E RK PK+ S N+ V L + S D++S+ D SDSSSLI IGRDNSIS LI SRSDYG+IASLN SF LIRSG LYRLRRQ VVEHW+YFSCQLL WEAFDP+R +WM LP+M +ECF+FSDKESL VGTELLVFGK LSHVI+RYS+LTNTWSSGM MN PRCLFGSAS+GE+AIL GGCD G LS AELYNSE G W+ LP MNKPRK+CSAVFMD K+YVIGG+GG++SK+LTCGEEY+L+T WTEIP+MSPVR +A + MP T+EAPPLVAVVNNELYAADYA+MEVRKYDK K W T+GRLPERA SMNGWGLAFRACGDRLIVIGGPRA GEG IE+N+W P +GPP WNLLGRK+SGSFVYNCAVMGC
Sbjct: 1 MLEDRSCLVPRDFPR----ESNWAACMNYSLDRIEVQHGKRPLENNHENEVVQRKLPKR---SVSLNEEVVLSLGDASVSPADEASNQRHAADNSDSSSLIPAIGRDNSISCLIHCSRSDYGAIASLNCSFHSLIRSGELYRLRRQYGVVEHWVYFSCQLLEWEAFDPSRRRWMHLPSMNPNECFVFSDKESLAVGTELLVFGKEILSHVIYRYSILTNTWSSGMQMNAPRCLFGSASLGEIAILTGGCDSQGNILSSAELYNSETGRWKTLPSMNKPRKMCSAVFMDRKFYVIGGIGGTESKLLTCGEEYDLETGKWTEIPSMSPVRAGEARDDNMPATSEAPPLVAVVNNELYAADYADMEVRKYDKQNKAWVTIGRLPERAGSMNGWGLAFRACGDRLIVIGGPRAMGEGIIEVNSWVPSEGPPQWNLLGRKRSGSFVYNCAVMGC 442
BLAST of XM_017367496.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9SM39 ((F-box/kelch-repeat protein SKIP11-like isoform X1 {ECO:0000313|RefSeq:XP_011071010.1, ECO:0000313|RefSeq:XP_011071011.1}))
HSP 1 Score: 658.677 bits (1698), Expect = 0.000e+0
Identity = 316/449 (70.38%), Postives = 363/449 (80.85%), Query Frame = 0
Match: A0A6I9SM39 ((F-box/kelch-repeat protein SKIP11-like isoform X1 {ECO:0000313|RefSeq:XP_011071010.1, ECO:0000313|RefSeq:XP_011071011.1}))
HSP 1 Score: 658.677 bits (1698), Expect = 0.000e+0
Identity = 316/449 (70.38%), Postives = 363/449 (80.85%), Query Frame = 0
Query: 1 MLEDRSCLVSRSYSRTYERENSWVCMNYSLDKIEIQNGKRPLE-SNGDEESEARKFPKQQTNSYESNDSTVTLLDLSMTSTTDQSSDHGDTGDYSDSSSLIHGIGRDNSISSLIRSSRSDYGSIASLNRSFRDLIRSGLLYRLRRQNRVVEHWIYFSCQLLGWEAFDPARLKWMRLPTMTSDECFMFSDKESLGVGTELLVFGKVFLSHVIFRYSLLTNTWSSGMTMNFPRCLFGSASMGELAILAGGCDLSGKTLSVAELYNSERGTWEVLPDMNKPRKLCSAVFMDEKYYVIGGVGGSQSKVLTCGEEYNLQTRTWTEIPNMSPVRTRQATEGGMPVTAEAPPLVAVVNNELYAADYAEMEVRKYDKNRKVWETVGRLPERADSMNGWGLAFRACGDRLIVIGGPRAQGEGFIEINAWAPKDGPPHWNLLGRKQSGSFVYNCAVMGC 448
MLEDR+CLVSR YSRT +RE +W CMNY L+K E+Q KR LE +NG EE RK K+ N ++ S L +S +S +DQS+ GD SDSSSLI IGRDNSIS LI+ SR+DYG+IASLNRSFR LIRSG LY+LRRQN VVEHW+YFSCQLL WEAFDP+R WM LP M +ECF+F+DKESL VGTELLVFGK +SHVI+RYSLLTNTW+SGM+MN PRCLFGSAS+GE+AILAGGCD G LS AELYNSE GTW LP M KPRK+CS VFMD +YVIGG+GG+ K+LTC EEYNL+T+TWTEIPNMSPVRT A + P +EAPPL+AVVNN+LYAADYA+MEVRKYDK+ +VW TVGRLPERADSM GWGLAFR CGDRLIVIGGPR GEGFIE+N+W P +GPP W+LLGRK+SGSFVYNCAVMGC
Sbjct: 1 MLEDRACLVSRDYSRTCDREGNWPCMNYRLEKSEVQQSKRRLEETNGGEEVIVRKVSKRSGNQIDTALSVGGFL-MSFSSQSDQSNRQRREGDDSDSSSLIAAIGRDNSISCLIKCSRADYGAIASLNRSFRSLIRSGELYKLRRQNGVVEHWVYFSCQLLEWEAFDPSRRHWMHLPRMNPNECFVFADKESLAVGTELLVFGKALMSHVIYRYSLLTNTWTSGMSMNSPRCLFGSASLGEIAILAGGCDSHGNILSSAELYNSEEGTWMTLPSMKKPRKMCSGVFMDGNFYVIGGIGGADGKLLTCAEEYNLETQTWTEIPNMSPVRTGAARDNEPPAASEAPPLIAVVNNQLYAADYADMEVRKYDKDNRVWVTVGRLPERADSMYGWGLAFRGCGDRLIVIGGPRNAGEGFIEVNSWVPSEGPPQWDLLGRKRSGSFVYNCAVMGC 448
BLAST of XM_017367496.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6V4K3 ((F-box/kelch-repeat protein SKIP11-like {ECO:0000313|RefSeq:XP_027096842.1}))
HSP 1 Score: 658.292 bits (1697), Expect = 0.000e+0
Identity = 321/448 (71.65%), Postives = 366/448 (81.70%), Query Frame = 0
Match: A0A6P6V4K3 ((F-box/kelch-repeat protein SKIP11-like {ECO:0000313|RefSeq:XP_027096842.1}))
HSP 1 Score: 658.292 bits (1697), Expect = 0.000e+0
Identity = 321/448 (71.65%), Postives = 366/448 (81.70%), Query Frame = 0
Query: 1 MLEDRSCLVSRSYSRTYERENSWVCMNYSLDKIEIQNGKRPLESNGDEESEARKFPKQQTNSYESNDSTVTLLDLSMTSTTDQSSDHGDTGDYSDSSSLIHGIGRDNSISSLIRSSRSDYGSIASLNRSFRDLIRSGLLYRLRRQNRVVEHWIYFSCQLLGWEAFDPARLKWMRLPTMTSDECFMFSDKESLGVGTELLVFGKVFLSHVIFRYSLLTNTWSSGMTMNFPRCLFGSASMGELAILAGGCDLSGKTLSVAELYNSERGTWEVLPDMNKPRKLCSAVFMDEKYYVIGGVGGSQSKVLTCGEEYNLQTRTWTEIPNMSPVRTRQATEGGMPVTAEAPPLVAVVNNELYAADYAEMEVRKYDKNRKVWETVGRLPERADSMNGWGLAFRACGDRLIVIGGPRAQGEGFIEINAWAPKDGPPHWNLLGRKQSGSFVYNCAVMGC 448
MLEDRSCLVSR Y RT ++E SW M Y +KI+I GKRPLE++G EE A K PKQ +++ +S ++ +TL LSM D+S++ G SDSSSLIH IGRDNSIS LI SRSDYG+IASLNRSFR L+RSG LYRLRRQ+ V+EHW+YFSCQLL WEAFDP+RL+WM LPTM +ECF+FSDKESL VGTELLVFGK LSHVI+ YSLLTNTW+SGM MN PRCLFGSAS+GE+AILAGGCD G LS AELYNSE G W LP MNKPRK+CS VFMD+K+YVIGG+GG SK+LTCGEEY+L R WTEIPNMSPVRT A + P T+EAPPLVAVVN+ELYAADYA+M VRKYDK+ K W TVGRLPERA SMNGWGLAFRACGDRLIVIGGPR GEG+IE+N+W P +GPP WNLLG+KQSGSFVYNCAVMGC
Sbjct: 1 MLEDRSCLVSRDYPRTCDQEGSWARM-YRREKIDILRGKRPLENDGQEELVATKVPKQ-SDADKSLETALTLGALSMPPA-DESTNQRHAGSNSDSSSLIHAIGRDNSISCLIHCSRSDYGAIASLNRSFRSLVRSGELYRLRRQSGVIEHWVYFSCQLLEWEAFDPSRLRWMHLPTMNPNECFVFSDKESLAVGTELLVFGKEVLSHVIYCYSLLTNTWTSGMRMNAPRCLFGSASLGEIAILAGGCDSQGNILSSAELYNSETGQWNTLPSMNKPRKMCSGVFMDKKFYVIGGIGGPDSKLLTCGEEYDLDRRIWTEIPNMSPVRTGAARDTETPATSEAPPLVAVVNDELYAADYADMAVRKYDKHNKAWFTVGRLPERAVSMNGWGLAFRACGDRLIVIGGPRTVGEGYIEVNSWVPSEGPPEWNLLGQKQSGSFVYNCAVMGC 445
BLAST of XM_017367496.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068TWI2 ((Uncharacterized protein {ECO:0000313|EMBL:CDP00309.1}))
HSP 1 Score: 658.292 bits (1697), Expect = 0.000e+0
Identity = 321/448 (71.65%), Postives = 366/448 (81.70%), Query Frame = 0
Match: A0A068TWI2 ((Uncharacterized protein {ECO:0000313|EMBL:CDP00309.1}))
HSP 1 Score: 658.292 bits (1697), Expect = 0.000e+0
Identity = 321/448 (71.65%), Postives = 366/448 (81.70%), Query Frame = 0
Query: 1 MLEDRSCLVSRSYSRTYERENSWVCMNYSLDKIEIQNGKRPLESNGDEESEARKFPKQQTNSYESNDSTVTLLDLSMTSTTDQSSDHGDTGDYSDSSSLIHGIGRDNSISSLIRSSRSDYGSIASLNRSFRDLIRSGLLYRLRRQNRVVEHWIYFSCQLLGWEAFDPARLKWMRLPTMTSDECFMFSDKESLGVGTELLVFGKVFLSHVIFRYSLLTNTWSSGMTMNFPRCLFGSASMGELAILAGGCDLSGKTLSVAELYNSERGTWEVLPDMNKPRKLCSAVFMDEKYYVIGGVGGSQSKVLTCGEEYNLQTRTWTEIPNMSPVRTRQATEGGMPVTAEAPPLVAVVNNELYAADYAEMEVRKYDKNRKVWETVGRLPERADSMNGWGLAFRACGDRLIVIGGPRAQGEGFIEINAWAPKDGPPHWNLLGRKQSGSFVYNCAVMGC 448
MLEDRSCLVSR Y RT ++E SW M Y +KI+I GKRPLE++G EE A K PKQ +++ +S ++ +TL LSM D+S++ G SDSSSLIH IGRDNSIS LI SRSDYG+IASLNRSFR L+RSG LYRLRRQ+ V+EHW+YFSCQLL WEAFDP+RL+WM LPTM +ECF+FSDKESL VGTELLVFGK LSHVI+ YSLLTNTW+SGM MN PRCLFGSAS+GE+AILAGGCD G LS AELYNSE G W LP MNKPRK+CS VFMD+K+YVIGG+GG SK+LTCGEEY+L R WTEIPNMSPVRT A + P T+EAPPLVAVVN+ELYAADYA+M VRKYDK+ K W TVGRLPERA SMNGWGLAFRACGDRLIVIGGPR GEG+IE+N+W P +GPP WNLLG+KQSGSFVYNCAVMGC
Sbjct: 1 MLEDRSCLVSRDYPRTCDQEGSWARM-YRREKIDILRGKRPLENDGQEELVATKVPKQ-SDADKSLETALTLGALSMPPA-DESTNQRHAGSNSDSSSLIHAIGRDNSISCLIHCSRSDYGAIASLNRSFRSLVRSGELYRLRRQSGVIEHWVYFSCQLLEWEAFDPSRLRWMHLPTMNPNECFVFSDKESLAVGTELLVFGKEVLSHVIYCYSLLTNTWTSGMRMNAPRCLFGSASLGEIAILAGGCDSQGNILSSAELYNSETGQWNTLPSMNKPRKMCSGVFMDKKFYVIGGIGGPDSKLLTCGEEYDLDRRIWTEIPNMSPVRTGAARDTETPATSEAPPLVAVVNDELYAADYADMAVRKYDKHNKAWFTVGRLPERAVSMNGWGLAFRACGDRLIVIGGPRTVGEGYIEVNSWVPSEGPPEWNLLGQKQSGSFVYNCAVMGC 445
| Match Name | Stats | Description |
|---|---|---|
| A0A5J5AEH9 | E-Value: 0.000e+0, PID: 72.99 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8529... [more] |
| A0A1U7WTL9 | E-Value: 0.000e+0, PID: 71.94 | (F-box/kelch-repeat protein SKIP11-like {ECO:00003... [more] |
| A0A1U7WF06 | E-Value: 0.000e+0, PID: 70.82 | (F-box/kelch-repeat protein SKIP11-like {ECO:00003... [more] |
| A0A1J6HSM3 | E-Value: 0.000e+0, PID: 71.71 | (F-boxkelch-repeat protein skip11 {ECO:0000313|EMB... [more] |
| A0A1S3XX22 | E-Value: 0.000e+0, PID: 70.82 | (F-box/kelch-repeat protein SKIP11-like {ECO:00003... [more] |
| A0A1J6IYG9 | E-Value: 0.000e+0, PID: 70.60 | (F-boxkelch-repeat protein skip11 {ECO:0000313|EMB... [more] |
| A0A1S4DJH8 | E-Value: 0.000e+0, PID: 70.82 | (F-box/kelch-repeat protein SKIP11-like {ECO:00003... [more] |
| A0A6I9SM39 | E-Value: 0.000e+0, PID: 70.38 | (F-box/kelch-repeat protein SKIP11-like isoform X1... [more] |
| A0A6P6V4K3 | E-Value: 0.000e+0, PID: 71.65 | (F-box/kelch-repeat protein SKIP11-like {ECO:00003... [more] |
| A0A068TWI2 | E-Value: 0.000e+0, PID: 71.65 | (Uncharacterized protein {ECO:0000313|EMBL:CDP0030... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |