Resource Type:
Polypeptide
Name:
XM_017366421.1
Identifier:
XM_017366421.1-protein
Sequence:
MAKGPGLYSDIGKKARDLLYRDFQSDHMFALTTSTQNGMIITPSALKTGD
LLLADLSTQIKSKNVLTDLKVDTASNIMTTITIDEPAPGIKSIFTFAVPD
QSSGKVELQYFHENAGISTSIGLKAVPVISFSGVAGDDRLTLGTDISFDT
ATRKFVKCNAGLNFSSSDLIASLSLNDKGDTLTGSYIHTVSPLTNTAAGA
EFSHCFSSNENTLTIGTQHALDPLTTVKAKVNNYGKASGAIQHIWRQKAI
VTISGEVDVMAIDKSAKVGLCLILMP
Sequence Length:
276
Sequence Checksum:
9bfa85ee7f9e5545e9c639ea958f143d
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017366421.1, derives from mRNA, XM_017366421.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017366421.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017366421.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7GEU8 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5939047.1}))
HSP 1 Score: 421.009 bits (1081), Expect = 1.214e-147
Identity = 201/276 (72.83%), Postives = 231/276 (83.70%), Query Frame = 0
Match: A0A7J7GEU8 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5939047.1}))
HSP 1 Score: 421.009 bits (1081), Expect = 1.214e-147
Identity = 201/276 (72.83%), Postives = 231/276 (83.70%), Query Frame = 0
Query: 1 MAKGPGLYSDIGKKARDLLYRDFQSDHMFALTTSTQNGMIITPSALKTGDLLLADLSTQIKSKNVLTDLKVDTASNIMTTITIDEPAPGIKSIFTFAVPDQSSGKVELQYFHENAGISTSIGLKAVPVISFSGVAGDDRLTLGTDISFDTATRKFVKCNAGLNFSSSDLIASLSLNDKGDTLTGSYIHTVSPLTNTAAGAEFSHCFSSNENTLTIGTQHALDPLTTVKAKVNNYGKASGAIQHIWRQKAIVTISGEVDVMAIDKSAKVGLCLILMP 276
M KGPGLYSDIGKKARDLLYRD+QSDH F +TT T G+ IT S K G+L LAD++TQ+K+KN+ TD+KVDT SN++TTITIDEPAPG+K+IF+F VPDQ SGKVELQY HE AGIST IGL A PV++FSGV G+D ++LGTD+SFDT T F KCNAGLNFS SDLIASL+LNDKGDT+T SY HTVSPLTNTA GAE + FS NENTLTIGTQHALDPLTTVKA+VN+YGKAS IQH WR K++ TISGEVD AI+KSAK+GL L L P
Sbjct: 1 MGKGPGLYSDIGKKARDLLYRDYQSDHKFTVTTYTSTGVAITTSGTKKGELYLADVTTQLKNKNITTDIKVDTNSNVLTTITIDEPAPGLKTIFSFIVPDQRSGKVELQYLHEYAGISTGIGLTASPVVNFSGVVGNDVVSLGTDLSFDTVTGNFTKCNAGLNFSKSDLIASLALNDKGDTVTASYYHTVSPLTNTAVGAELTRSFSKNENTLTIGTQHALDPLTTVKARVNSYGKASALIQHAWRPKSLFTISGEVDTTAIEKSAKIGLALALKP 276
BLAST of XM_017366421.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5ARX5 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8533014.1}))
HSP 1 Score: 419.083 bits (1076), Expect = 5.568e-147
Identity = 199/276 (72.10%), Postives = 232/276 (84.06%), Query Frame = 0
Match: A0A5J5ARX5 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8533014.1}))
HSP 1 Score: 419.083 bits (1076), Expect = 5.568e-147
Identity = 199/276 (72.10%), Postives = 232/276 (84.06%), Query Frame = 0
Query: 1 MAKGPGLYSDIGKKARDLLYRDFQSDHMFALTTSTQNGMIITPSALKTGDLLLADLSTQIKSKNVLTDLKVDTASNIMTTITIDEPAPGIKSIFTFAVPDQSSGKVELQYFHENAGISTSIGLKAVPVISFSGVAGDDRLTLGTDISFDTATRKFVKCNAGLNFSSSDLIASLSLNDKGDTLTGSYIHTVSPLTNTAAGAEFSHCFSSNENTLTIGTQHALDPLTTVKAKVNNYGKASGAIQHIWRQKAIVTISGEVDVMAIDKSAKVGLCLILMP 276
M KGPGLYSDIGKKARD+LY+D+QSDH F +TT T G+ IT S K G+L LAD++TQ+K+KN+ TD+KVDT SN+ TTITIDEPAPG+K+IF+F VPDQ SGKVELQY HE AGISTSIGL A P+++FSGVAG++ ++LGTD+SFDTAT F KCNAG +FS++DLIASL+LNDK DTLT SY HTVSPLTNTA GAE H FSSNENTLTIGTQHALDPLT VKA+VNNYGKAS IQH WR K++ TISGEVD AI+KSAK+GL L L P
Sbjct: 1 MGKGPGLYSDIGKKARDILYKDYQSDHKFTITTYTSTGVAITSSGTKKGELFLADVNTQLKNKNITTDIKVDTNSNLFTTITIDEPAPGLKTIFSFKVPDQKSGKVELQYLHEYAGISTSIGLTASPIVNFSGVAGNNSVSLGTDLSFDTATGNFTKCNAGFSFSTADLIASLALNDKADTLTASYYHTVSPLTNTAVGAELIHSFSSNENTLTIGTQHALDPLTMVKARVNNYGKASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP 276
BLAST of XM_017366421.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7YF52 ((mitochondrial outer membrane protein porin of 36 kDa-like {ECO:0000313|RefSeq:XP_009797869.1}))
HSP 1 Score: 418.698 bits (1075), Expect = 9.116e-147
Identity = 196/276 (71.01%), Postives = 235/276 (85.14%), Query Frame = 0
Match: A0A1U7YF52 ((mitochondrial outer membrane protein porin of 36 kDa-like {ECO:0000313|RefSeq:XP_009797869.1}))
HSP 1 Score: 418.698 bits (1075), Expect = 9.116e-147
Identity = 196/276 (71.01%), Postives = 235/276 (85.14%), Query Frame = 0
Query: 1 MAKGPGLYSDIGKKARDLLYRDFQSDHMFALTTSTQNGMIITPSALKTGDLLLADLSTQIKSKNVLTDLKVDTASNIMTTITIDEPAPGIKSIFTFAVPDQSSGKVELQYFHENAGISTSIGLKAVPVISFSGVAGDDRLTLGTDISFDTATRKFVKCNAGLNFSSSDLIASLSLNDKGDTLTGSYIHTVSPLTNTAAGAEFSHCFSSNENTLTIGTQHALDPLTTVKAKVNNYGKASGAIQHIWRQKAIVTISGEVDVMAIDKSAKVGLCLILMP 276
M KGPGLYSDIGKKARDLLYRD+ SDH F +TT T NG+ IT S +K G+ LLAD++TQ+K+KN TD+KVDT SN+ TTIT+DEPAPG+K+IF+F VPDQ SGKVELQY HE AGISTSIGL A P+++FSGVAG++++ LGTD+SFDT++ F KCNAGLNF++SDLIASL+LNDKGDTL+ SY HTV+PLTNTA GAE +H FSSNENT+TIGT H+LDPLTTVKA+VN+YGKAS IQH WR K++ TISGEVD AI+KSAKVGL + L P
Sbjct: 1 MVKGPGLYSDIGKKARDLLYRDYVSDHKFTVTTYTSNGVAITSSGVKKGEFLLADVNTQLKNKNFTTDVKVDTNSNVYTTITVDEPAPGLKTIFSFVVPDQKSGKVELQYLHEYAGISTSIGLAASPLVNFSGVAGNNKIALGTDLSFDTSSGNFTKCNAGLNFTTSDLIASLALNDKGDTLSASYYHTVNPLTNTAVGAELTHSFSSNENTMTIGTHHSLDPLTTVKARVNSYGKASALIQHEWRPKSLFTISGEVDTRAIEKSAKVGLAVALKP 276
BLAST of XM_017366421.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S4CZY9 ((mitochondrial outer membrane protein porin of 36 kDa-like {ECO:0000313|RefSeq:XP_016506735.1}))
HSP 1 Score: 418.698 bits (1075), Expect = 9.116e-147
Identity = 196/276 (71.01%), Postives = 235/276 (85.14%), Query Frame = 0
Match: A0A1S4CZY9 ((mitochondrial outer membrane protein porin of 36 kDa-like {ECO:0000313|RefSeq:XP_016506735.1}))
HSP 1 Score: 418.698 bits (1075), Expect = 9.116e-147
Identity = 196/276 (71.01%), Postives = 235/276 (85.14%), Query Frame = 0
Query: 1 MAKGPGLYSDIGKKARDLLYRDFQSDHMFALTTSTQNGMIITPSALKTGDLLLADLSTQIKSKNVLTDLKVDTASNIMTTITIDEPAPGIKSIFTFAVPDQSSGKVELQYFHENAGISTSIGLKAVPVISFSGVAGDDRLTLGTDISFDTATRKFVKCNAGLNFSSSDLIASLSLNDKGDTLTGSYIHTVSPLTNTAAGAEFSHCFSSNENTLTIGTQHALDPLTTVKAKVNNYGKASGAIQHIWRQKAIVTISGEVDVMAIDKSAKVGLCLILMP 276
M KGPGLYSDIGKKARDLLYRD+ SDH F +TT T NG+ IT S +K G+ LLAD++TQ+K+KN TD+KVDT SN+ TTIT+DEPAPG+K+IF+F VPDQ SGKVELQY HE AGISTSIGL A P+++FSGVAG++++ LGTD+SFDT++ F KCNAGLNF++SDLIASL+LNDKGDTL+ SY HTV+PLTNTA GAE +H FSSNENT+TIGT H+LDPLTTVKA+VN+YGKAS IQH WR K++ TISGEVD AI+KSAKVGL + L P
Sbjct: 1 MVKGPGLYSDIGKKARDLLYRDYVSDHKFTVTTYTSNGVAITSSGVKKGEFLLADVNTQLKNKNFTTDVKVDTNSNVYTTITVDEPAPGLKTIFSFVVPDQKSGKVELQYLHEYAGISTSIGLAASPLVNFSGVAGNNKIALGTDLSFDTSSGNFTKCNAGLNFTTSDLIASLALNDKGDTLSASYYHTVNPLTNTAVGAELTHSFSSNENTMTIGTHHSLDPLTTVKARVNSYGKASALIQHEWRPKSLFTISGEVDTRAIEKSAKVGLAVALKP 276
BLAST of XM_017366421.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1J6L9I0 ((Mitochondrial outer membrane protein porin of 36 kDa {ECO:0000313|EMBL:OIT27697.1}))
HSP 1 Score: 418.698 bits (1075), Expect = 9.629e-147
Identity = 196/276 (71.01%), Postives = 235/276 (85.14%), Query Frame = 0
Match: A0A1J6L9I0 ((Mitochondrial outer membrane protein porin of 36 kDa {ECO:0000313|EMBL:OIT27697.1}))
HSP 1 Score: 418.698 bits (1075), Expect = 9.629e-147
Identity = 196/276 (71.01%), Postives = 235/276 (85.14%), Query Frame = 0
Query: 1 MAKGPGLYSDIGKKARDLLYRDFQSDHMFALTTSTQNGMIITPSALKTGDLLLADLSTQIKSKNVLTDLKVDTASNIMTTITIDEPAPGIKSIFTFAVPDQSSGKVELQYFHENAGISTSIGLKAVPVISFSGVAGDDRLTLGTDISFDTATRKFVKCNAGLNFSSSDLIASLSLNDKGDTLTGSYIHTVSPLTNTAAGAEFSHCFSSNENTLTIGTQHALDPLTTVKAKVNNYGKASGAIQHIWRQKAIVTISGEVDVMAIDKSAKVGLCLILMP 276
M KGPGLYSDIGKKARDLLYRD+ +DH F +TT T NG+ IT S +K G+ LLAD++TQ+K+KN TD+KVDT SN+ TTIT+DEPAPG+K+IF+F VPDQ SGKVELQY HE AGISTSIGL A P+++FSGVAG++++ LGTD+SFDT++ F KCNAGLNF++SDLIASL+LNDKGDTLT SY HTV+PLTNTA GAE +H FSSNENT+TIGT H+LDPLTTVKA+VN+YGKAS IQH WR K++ TISGEVD AI+KSAKVGL + L P
Sbjct: 1 MVKGPGLYSDIGKKARDLLYRDYVTDHKFTVTTYTSNGVAITSSGVKKGEFLLADVNTQLKNKNFTTDVKVDTNSNVYTTITVDEPAPGLKTIFSFVVPDQKSGKVELQYLHEYAGISTSIGLAASPLVNFSGVAGNNKIALGTDLSFDTSSGNFTKCNAGLNFTTSDLIASLALNDKGDTLTASYYHTVNPLTNTAVGAELTHSFSSNENTMTIGTHHSLDPLTTVKARVNSYGKASALIQHEWRPKSLFTISGEVDTRAIEKSAKVGLAVALKP 276
BLAST of XM_017366421.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: P42056 (Mitochondrial outer membrane protein porin of 36 kDa (POM 36) (Voltage-dependent anion-selective channel protein) (VDAC))
HSP 1 Score: 416.387 bits (1069), Expect = 8.064e-146
Identity = 197/276 (71.38%), Postives = 233/276 (84.42%), Query Frame = 0
Match: P42056 (Mitochondrial outer membrane protein porin of 36 kDa (POM 36) (Voltage-dependent anion-selective channel protein) (VDAC))
HSP 1 Score: 416.387 bits (1069), Expect = 8.064e-146
Identity = 197/276 (71.38%), Postives = 233/276 (84.42%), Query Frame = 0
Query: 1 MAKGPGLYSDIGKKARDLLYRDFQSDHMFALTTSTQNGMIITPSALKTGDLLLADLSTQIKSKNVLTDLKVDTASNIMTTITIDEPAPGIKSIFTFAVPDQSSGKVELQYFHENAGISTSIGLKAVPVISFSGVAGDDRLTLGTDISFDTATRKFVKCNAGLNFSSSDLIASLSLNDKGDTLTGSYIHTVSPLTNTAAGAEFSHCFSSNENTLTIGTQHALDPLTTVKAKVNNYGKASGAIQHIWRQKAIVTISGEVDVMAIDKSAKVGLCLILMP 276
M KGPGLYSDIGKKARDLLYRD+ SDH F +TT + G+ IT S LK G+L LAD+STQ+K+KN+ TD+KVDT SN+ TTIT+DEPAPG+K+IF+F VPDQ SGKVELQY HE AGI+TSIGL A P+++FSGVAG++ + LGTD+SFDTAT F KCNAGL+FSSSDLIASL+LNDKGDT++ SY HTV P+TNTA GAE +H FSSNENTLTIGTQH LDPLTTVKA+VN+YGKAS IQH WR K++ TISGEVD AI+KSAK+GL + L P
Sbjct: 1 MVKGPGLYSDIGKKARDLLYRDYVSDHKFTVTTYSTTGVAITASGLKKGELFLADVSTQLKNKNITTDVKVDTNSNVYTTITVDEPAPGLKTIFSFVVPDQKSGKVELQYLHEYAGINTSIGLTASPLVNFSGVAGNNTVALGTDLSFDTATGNFTKCNAGLSFSSSDLIASLALNDKGDTVSASYYHTVKPVTNTAVGAELTHSFSSNENTLTIGTQHLLDPLTTVKARVNSYGKASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLAVALKP 276
BLAST of XM_017366421.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9FVT8 ((Porin/voltage-dependent anion-selective channel protein {ECO:0000313|EMBL:PIM97188.1}))
HSP 1 Score: 415.616 bits (1067), Expect = 1.582e-145
Identity = 196/276 (71.01%), Postives = 231/276 (83.70%), Query Frame = 0
Match: A0A2G9FVT8 ((Porin/voltage-dependent anion-selective channel protein {ECO:0000313|EMBL:PIM97188.1}))
HSP 1 Score: 415.616 bits (1067), Expect = 1.582e-145
Identity = 196/276 (71.01%), Postives = 231/276 (83.70%), Query Frame = 0
Query: 1 MAKGPGLYSDIGKKARDLLYRDFQSDHMFALTTSTQNGMIITPSALKTGDLLLADLSTQIKSKNVLTDLKVDTASNIMTTITIDEPAPGIKSIFTFAVPDQSSGKVELQYFHENAGISTSIGLKAVPVISFSGVAGDDRLTLGTDISFDTATRKFVKCNAGLNFSSSDLIASLSLNDKGDTLTGSYIHTVSPLTNTAAGAEFSHCFSSNENTLTIGTQHALDPLTTVKAKVNNYGKASGAIQHIWRQKAIVTISGEVDVMAIDKSAKVGLCLILMP 276
KGPGLYSDIGKKARDLLYRD+QSD F LTT T NG+ IT S K GDL LAD++TQ+K+KN+ TD+KVDT SN+ TTI +DEPAPG+K+IF+F PDQ SGKVELQYFHE AGISTS+GL A P+++FSGVAG+ ++ GTD+SFDTAT F KCNAG++F+++DLIASLSLNDKGDT+T SY HTVSPLTNTA GAE H FS+NENTLTIGTQH LDPLT+VKA+VNN+GKAS IQH WR K+++TISGEVD AI+KSAKVGL L L P
Sbjct: 3 FVKGPGLYSDIGKKARDLLYRDYQSDQKFTLTTYTSNGVAITSSGTKKGDLFLADVNTQLKNKNITTDVKVDTNSNVYTTIAVDEPAPGVKAIFSFVAPDQRSGKVELQYFHEYAGISTSLGLTAKPLVNFSGVAGNHKVAFGTDVSFDTATGNFTKCNAGVSFTTNDLIASLSLNDKGDTITASYFHTVSPLTNTAVGAELIHGFSTNENTLTIGTQHLLDPLTSVKARVNNHGKASALIQHEWRPKSLITISGEVDTRAIEKSAKVGLALALKP 278
BLAST of XM_017366421.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PBK2 ((Eukaryotic porin/Tom40 protein {ECO:0000313|EMBL:PSR88361.1}))
HSP 1 Score: 414.846 bits (1065), Expect = 2.438e-145
Identity = 197/276 (71.38%), Postives = 231/276 (83.70%), Query Frame = 0
Match: A0A2R6PBK2 ((Eukaryotic porin/Tom40 protein {ECO:0000313|EMBL:PSR88361.1}))
HSP 1 Score: 414.846 bits (1065), Expect = 2.438e-145
Identity = 197/276 (71.38%), Postives = 231/276 (83.70%), Query Frame = 0
Query: 1 MAKGPGLYSDIGKKARDLLYRDFQSDHMFALTTSTQNGMIITPSALKTGDLLLADLSTQIKSKNVLTDLKVDTASNIMTTITIDEPAPGIKSIFTFAVPDQSSGKVELQYFHENAGISTSIGLKAVPVISFSGVAGDDRLTLGTDISFDTATRKFVKCNAGLNFSSSDLIASLSLNDKGDTLTGSYIHTVSPLTNTAAGAEFSHCFSSNENTLTIGTQHALDPLTTVKAKVNNYGKASGAIQHIWRQKAIVTISGEVDVMAIDKSAKVGLCLILMP 276
M KGPG YS IGK+ARDLLYRD+Q DH F +TT T NG+ IT + K G+L LAD++TQ+K+KN+ TD+KVDT SN+ TTITIDEPAPG+K+IF+F VPDQ SGKVELQY HE AGISTSIGL A P+++FSGVAG++ ++LGTD+SFDTAT F KCNAGL+FS SDLIASL LN+KG+ LT SY HTVSPLTNTA GAE +H FS+NENTLTIGTQHALDPLTTVKA++NNYGKAS IQH WR K++ TISGEVD AIDKSAK+GL L L P
Sbjct: 1 MGKGPGFYSYIGKRARDLLYRDYQGDHKFTVTTYTSNGVAITSTGTKKGELFLADVATQLKNKNITTDIKVDTNSNLSTTITIDEPAPGLKTIFSFIVPDQRSGKVELQYLHEYAGISTSIGLTASPIVNFSGVAGNNVVSLGTDLSFDTATGNFTKCNAGLSFSKSDLIASLILNNKGEALTASYYHTVSPLTNTAVGAELTHSFSNNENTLTIGTQHALDPLTTVKARLNNYGKASALIQHEWRPKSLFTISGEVDTRAIDKSAKIGLALALKP 276
BLAST of XM_017366421.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A3Q7EA80 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc01g010760.3.1}))
HSP 1 Score: 414.846 bits (1065), Expect = 3.241e-145
Identity = 197/276 (71.38%), Postives = 233/276 (84.42%), Query Frame = 0
Match: A0A3Q7EA80 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc01g010760.3.1}))
HSP 1 Score: 414.846 bits (1065), Expect = 3.241e-145
Identity = 197/276 (71.38%), Postives = 233/276 (84.42%), Query Frame = 0
Query: 1 MAKGPGLYSDIGKKARDLLYRDFQSDHMFALTTSTQNGMIITPSALKTGDLLLADLSTQIKSKNVLTDLKVDTASNIMTTITIDEPAPGIKSIFTFAVPDQSSGKVELQYFHENAGISTSIGLKAVPVISFSGVAGDDRLTLGTDISFDTATRKFVKCNAGLNFSSSDLIASLSLNDKGDTLTGSYIHTVSPLTNTAAGAEFSHCFSSNENTLTIGTQHALDPLTTVKAKVNNYGKASGAIQHIWRQKAIVTISGEVDVMAIDKSAKVGLCLILMP 276
M KGPGLYSDIGKKARDLLYRD+ SDH F +TT + G+ IT S LK G+L LAD+STQ+K+KN+ TD+KVDT SN+ TTIT+DEPAPG+K+IF+F VPDQ SGKVELQY HE AGI+TSIGL A P+++FSGVAG++ + LGTD+SFDTAT F KCNAGL+FSSSDLIASL+LNDKGDT++ SY HTV P+TNTA GAE +H FSSNENTLTIGTQH LDPLTTVKA+VN+YGKAS IQH WR K++ TISGEVD AI+KSAK+GL + L P
Sbjct: 1 MVKGPGLYSDIGKKARDLLYRDYVSDHKFTITTFSTTGVAITSSGLKKGELFLADVSTQLKNKNITTDVKVDTNSNLYTTITVDEPAPGLKTIFSFVVPDQKSGKVELQYLHEYAGINTSIGLTASPLVNFSGVAGNNIVALGTDVSFDTATGNFTKCNAGLSFSSSDLIASLALNDKGDTVSASYYHTVKPVTNTAVGAELTHSFSSNENTLTIGTQHLLDPLTTVKARVNSYGKASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLAVALKP 276
BLAST of XM_017366421.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068TW83 ((Uncharacterized protein {ECO:0000313|EMBL:CDP00287.1}))
HSP 1 Score: 414.461 bits (1064), Expect = 4.309e-145
Identity = 193/276 (69.93%), Postives = 234/276 (84.78%), Query Frame = 0
Match: A0A068TW83 ((Uncharacterized protein {ECO:0000313|EMBL:CDP00287.1}))
HSP 1 Score: 414.461 bits (1064), Expect = 4.309e-145
Identity = 193/276 (69.93%), Postives = 234/276 (84.78%), Query Frame = 0
Query: 1 MAKGPGLYSDIGKKARDLLYRDFQSDHMFALTTSTQNGMIITPSALKTGDLLLADLSTQIKSKNVLTDLKVDTASNIMTTITIDEPAPGIKSIFTFAVPDQSSGKVELQYFHENAGISTSIGLKAVPVISFSGVAGDDRLTLGTDISFDTATRKFVKCNAGLNFSSSDLIASLSLNDKGDTLTGSYIHTVSPLTNTAAGAEFSHCFSSNENTLTIGTQHALDPLTTVKAKVNNYGKASGAIQHIWRQKAIVTISGEVDVMAIDKSAKVGLCLILMP 276
M KGPGLYSDIGK+ARDLLY+D+Q DH F++TT + NG+ IT S LK G+L L D++TQ+K+KN+ TD KVDT S + TTIT+DEPAPG+K+IF+F VPDQ SGKVELQY HE AGIS+SIGL A P+++FSGVAG+D+L LGTD+SFDTAT F K NAGL+F++SDLIA+L+LNDKGDTLT SY H+VSPLTNTA GAE SH FS+NEN+LT+GTQH LDPLTTVKA+VNNYGKAS IQH WR K+++TISGEVD AI+KSAK+GL + L P
Sbjct: 1 MVKGPGLYSDIGKRARDLLYKDYQGDHKFSVTTYSPNGVAITASGLKKGELFLGDVNTQLKNKNITTDFKVDTNSKVFTTITVDEPAPGLKTIFSFVVPDQRSGKVELQYLHEYAGISSSIGLTANPIVNFSGVAGNDKLALGTDVSFDTATGNFTKYNAGLSFTNSDLIAALTLNDKGDTLTASYYHSVSPLTNTAVGAELSHSFSTNENSLTLGTQHLLDPLTTVKARVNNYGKASALIQHEWRPKSLLTISGEVDTRAIEKSAKIGLAVALKP 276
| Match Name | Stats | Description |
|---|---|---|
| A0A7J7GEU8 | E-Value: 1.214e-147, PID: 72.83 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5939... [more] |
| A0A5J5ARX5 | E-Value: 5.568e-147, PID: 72.10 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8533... [more] |
| A0A1U7YF52 | E-Value: 9.116e-147, PID: 71.01 | (mitochondrial outer membrane protein porin of 36 ... [more] |
| A0A1S4CZY9 | E-Value: 9.116e-147, PID: 71.01 | (mitochondrial outer membrane protein porin of 36 ... [more] |
| A0A1J6L9I0 | E-Value: 9.629e-147, PID: 71.01 | (Mitochondrial outer membrane protein porin of 36 ... [more] |
| P42056 | E-Value: 8.064e-146, PID: 71.38 | Mitochondrial outer membrane protein porin of 36 k... [more] |
| A0A2G9FVT8 | E-Value: 1.582e-145, PID: 71.01 | (Porin/voltage-dependent anion-selective channel p... [more] |
| A0A2R6PBK2 | E-Value: 2.438e-145, PID: 71.38 | (Eukaryotic porin/Tom40 protein {ECO:0000313|EMBL:... [more] |
| A0A3Q7EA80 | E-Value: 3.241e-145, PID: 71.38 | (Uncharacterized protein {ECO:0000313|EnsemblPlant... [more] |
| A0A068TW83 | E-Value: 4.309e-145, PID: 69.93 | (Uncharacterized protein {ECO:0000313|EMBL:CDP0028... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |