Resource Type:
Polypeptide
Name:
XM_017364557.1
Identifier:
XM_017364557.1-protein
Sequence:
MEVEHQLARWDGYVDWRNKPALRGRHGGMLAASFVLVVEILENLAFLANA
SNLVMYLSEHMHFSPKDSANSVTNFMGTAFLLALLGGFLSDAFLNTYFIY
LSSAFLEFLGWLILTVQAQSASLRPAECEANVPCRRVGGAKAAMLFAGLY
LAALGIGGIKGSLATHGAEQFDEDTPQGRKQRSTFFNYFVFSLATGALIA
VTLVVWIEDNRGWVWGFGISTFTIFLSIPLFLAGSKFYRNKIPCGSPLTT
ILKVLAASALNTCVAVARSPNNAIASMSASPAFGTSMKMENQQMTKKSSK
SLDLLETPSDSLKFLNRAVTRMPAHKLLECTVNEVEDVKIVLKILPVFGC
TIMLNCCLAQLSTFSVQQAASMDTKLGSFKVPPASLPVFPVIFIMILAPV
YDHLIIPFARKVTKTETGISHLQRIGIGLVLSIVAMGIAALVEIKRKRVA
TDTGLDTTQPLPITFFWIAFQYLCLGSADLFSLAGLLEFFFTEAPSSMRS
LATSLSWASLAMGYFLSTVIVSIVNSATGSAKNKPWLSGPNLNHYHLERF
YWLMCALSILNFLHYLFWANRYKYKALNKG
Sequence Length:
580
Sequence Checksum:
50604a402246a6f8a0da88eace17c707
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017364557.1, derives from mRNA, XM_017364557.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017364557.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017364557.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZKJ5 ((Putative Nitrate transporter 1:2 {ECO:0000313|EMBL:MPA44950.1}) (Fragment))
HSP 1 Score: 887.871 bits (2293), Expect = 0.000e+0
Identity = 438/579 (75.65%), Postives = 501/579 (86.53%), Query Frame = 0
Match: A0A5B6ZKJ5 ((Putative Nitrate transporter 1:2 {ECO:0000313|EMBL:MPA44950.1}) (Fragment))
HSP 1 Score: 887.871 bits (2293), Expect = 0.000e+0
Identity = 438/579 (75.65%), Postives = 501/579 (86.53%), Query Frame = 0
Query: 2 EVEHQLARWDGYVDWRNKPALRGRHGGMLAASFVLVVEILENLAFLANASNLVMYLSEHMHFSPKDSANSVTNFMGTAFLLALLGGFLSDAFLNTYFIYLSSAFLEFLGWLILTVQAQSASLRPAECEA---NVPCRRVGGAKAAMLFAGLYLAALGIGGIKGSLATHGAEQFDEDTPQGRKQRSTFFNYFVFSLATGALIAVTLVVWIEDNRGWVWGFGISTFTIFLSIPLFLAGSKFYRNKIPCGSPLTTILKVLAASALNTCVAVARSPNNAIASMSASPAFGTSMKMENQQMTKKSSKSLDLLETPSDSLKFLNRAVTRMPAHKLLECTVNEVEDVKIVLKILPVFGCTIMLNCCLAQLSTFSVQQAASMDTKLGSFKVPPASLPVFPVIFIMILAPVYDHLIIPFARKVTKTETGISHLQRIGIGLVLSIVAMGIAALVEIKRKRVATDTG-LDTTQPLPITFFWIAFQYLCLGSADLFSLAGLLEFFFTEAPSSMRSLATSLSWASLAMGYFLSTVIVSIVNSATGSAKNKPWLSGPNLNHYHLERFYWLMCALSILNFLHYLFWANRYKYKA 576
EVEH+L W+GYVDWRN+PALRGRHGGMLAASFVLVVE+LENLA+LANASNLV YLS++MHFSP SANSVTNFMGT+FLLALLGGFLSDAFL TY IYL SA +EFLG +ILTVQA S SL+P +C+ N+PC+ V G KAAMLF GLYL ALG+GGIKGSL HGAEQFDE+ PQGRKQRSTFFNYFVF L+ G LIAVTLVVWIEDN+GW WGFGIST TI SIP+FLAGS FYRNKIPCGSPLTTILKVL A+ LN C+ +SP+NAI SM+ SP+ T + E+++ ++K+++ +ETP+ +L+FLNRAV P H LEC+V +VE+VKIVLKILP+F CTIMLNCCLAQLSTFSV QAA+M+TKL + KVPPASLP+FPV+FIMILAPVYDH IIPFARKVT+TETGI+HLQRIGIGL+LSIVAM +AALVE KRKRVA+++G LD+ PLPITFFWIA QYL LGSADLF+LAGLLEFFFTEAPS+MRSLATSLSWASLAMGY+LSTVIVSIVNS T + +KPWLSG NLNHY LERFYWLMCALS LNFLHYLFWANRYKY++
Sbjct: 1 EVEHKLNIWEGYVDWRNRPALRGRHGGMLAASFVLVVEVLENLAYLANASNLVRYLSKYMHFSPSKSANSVTNFMGTSFLLALLGGFLSDAFLTTYHIYLISAVVEFLGLVILTVQAHSPSLKPPKCDPATPNIPCQEVHGGKAAMLFMGLYLVALGVGGIKGSLPAHGAEQFDENNPQGRKQRSTFFNYFVFCLSCGGLIAVTLVVWIEDNKGWEWGFGISTLTILSSIPIFLAGSSFYRNKIPCGSPLTTILKVLVAATLNNCIT--KSPSNAITSMTTSPSPPTPNRKEDEE---ANAKAMEPIETPTKTLQFLNRAVINKPVHTALECSVQQVEEVKIVLKILPIFACTIMLNCCLAQLSTFSVHQAATMNTKLRALKVPPASLPIFPVLFIMILAPVYDHFIIPFARKVTRTETGITHLQRIGIGLLLSIVAMAVAALVEAKRKRVASESGLLDSHNPLPITFFWIALQYLFLGSADLFTLAGLLEFFFTEAPSNMRSLATSLSWASLAMGYYLSTVIVSIVNSVTDKSNHKPWLSGSNLNHYQLERFYWLMCALSGLNFLHYLFWANRYKYRS 574
BLAST of XM_017364557.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7CC55 ((Putative Nitrate transporter 1:2 {ECO:0000313|EMBL:MPA77656.1}) (Fragment))
HSP 1 Score: 886.33 bits (2289), Expect = 0.000e+0
Identity = 443/576 (76.91%), Postives = 503/576 (87.33%), Query Frame = 0
Match: A0A5B7CC55 ((Putative Nitrate transporter 1:2 {ECO:0000313|EMBL:MPA77656.1}) (Fragment))
HSP 1 Score: 886.33 bits (2289), Expect = 0.000e+0
Identity = 443/576 (76.91%), Postives = 503/576 (87.33%), Query Frame = 0
Query: 5 HQLARWDGYVDWRNKPALRGRHGGMLAASFVLVVEILENLAFLANASNLVMYLSEHMHFSPKDSANSVTNFMGTAFLLALLGGFLSDAFLNTYFIYLSSAFLEFLGWLILTVQAQSASLRPAECEA---NVPCRRVGGAKAAMLFAGLYLAALGIGGIKGSLATHGAEQFDEDTPQGRKQRSTFFNYFVFSLATGALIAVTLVVWIEDNRGWVWGFGISTFTIFLSIPLFLAGSKFYRNKIPCGSPLTTILKVLAASALNTCVAVARSPNNAIASMSASPAFGTSMKMENQQMTKKSSKSLDLLETPSDSLKFLNRAVTRMPAHKLLECTVNEVEDVKIVLKILPVFGCTIMLNCCLAQLSTFSVQQAASMDTKLGSFKVPPASLPVFPVIFIMILAPVYDHLIIPFARKVTKTETGISHLQRIGIGLVLSIVAMGIAALVEIKRKRVATDTGL-DTTQPLPITFFWIAFQYLCLGSADLFSLAGLLEFFFTEAPSSMRSLATSLSWASLAMGYFLSTVIVSIVNSATGSAKNKPWLSGPNLNHYHLERFYWLMCALSILNFLHYLFWANRYKYKA 576
H+L W+GYVDWRN+PALRGRHGGMLAASFVLVVE+LENLA+LANASNLV YLS++MHFSP SANSVTNFMGT+FLLALLGGFLSDAFL TY IYL SA +EFLG +ILTVQA S SL+P +C+ N+PC+ V G KAAMLF GLYL ALG+GGIKGSL HGAEQFDE+T GRKQRSTFFNYFVF L+ G LIAVTLVVWIEDN+GW WGFGIST TI SIP+FLAGS FYRNKIPCGSPLTTI KVL A+ LNTC RSPNNAIASMS SP+ T + E+++ + K+++ +ETP+ SLKFLNRAV P H LEC+V++VE+VKIVLKILP+F CTIMLNCCLAQLSTFSVQQAA+M+TKLGS KVPPASLP+FPV+FIMILAPVYDH IIPFARKVT+TE GI+HLQRIGIGL+LSI++M +AALVE+KRKRVA+D+GL D+ +PLPITFFWIAFQYL LGSADLF+LAGLLEFFFTEAP SMRSLATSLSWASLA+GY+LSTVIVSIVNS TG++K+KPWLSG NLNHY LERFYWLMCALS LNFLHYLFWANRYKY++
Sbjct: 12 HKLNIWEGYVDWRNRPALRGRHGGMLAASFVLVVEVLENLAYLANASNLVRYLSKYMHFSPSKSANSVTNFMGTSFLLALLGGFLSDAFLTTYHIYLISAVVEFLGLVILTVQAHSPSLKPPKCDPATPNIPCQEVHGGKAAMLFMGLYLVALGVGGIKGSLPAHGAEQFDENTSHGRKQRSTFFNYFVFCLSCGGLIAVTLVVWIEDNKGWEWGFGISTLTILSSIPIFLAGSSFYRNKIPCGSPLTTIFKVLLAATLNTCKR--RSPNNAIASMSTSPSPPTPTRKEDEE--ANAIKAMEPIETPTKSLKFLNRAVINKPVHTALECSVHQVENVKIVLKILPIFACTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPIFPVVFIMILAPVYDHFIIPFARKVTRTEMGITHLQRIGIGLLLSIISMAVAALVEVKRKRVASDSGLIDSAKPLPITFFWIAFQYLFLGSADLFTLAGLLEFFFTEAPISMRSLATSLSWASLAIGYYLSTVIVSIVNSVTGNSKHKPWLSGSNLNHYQLERFYWLMCALSGLNFLHYLFWANRYKYRS 583
BLAST of XM_017364557.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9SPD3 ((protein NRT1/ PTR FAMILY 4.6 {ECO:0000313|RefSeq:XP_011071033.1}))
HSP 1 Score: 884.019 bits (2283), Expect = 0.000e+0
Identity = 445/581 (76.59%), Postives = 509/581 (87.61%), Query Frame = 0
Match: A0A6I9SPD3 ((protein NRT1/ PTR FAMILY 4.6 {ECO:0000313|RefSeq:XP_011071033.1}))
HSP 1 Score: 884.019 bits (2283), Expect = 0.000e+0
Identity = 445/581 (76.59%), Postives = 509/581 (87.61%), Query Frame = 0
Query: 1 MEVEHQLAR-WDGYVDWRNKPALRGRHGGMLAASFVLVVEILENLAFLANASNLVMYLSEHMHFSPKDSANSVTNFMGTAFLLALLGGFLSDAFLNTYFIYLSSAFLEFLGWLILTVQAQSASLRPAECE---ANVPCRRVGGAKAAMLFAGLYLAALGIGGIKGSLATHGAEQFDEDTPQGRKQRSTFFNYFVFSLATGALIAVTLVVWIEDNRGWVWGFGISTFTIFLSIPLFLAGSKFYRNKIPCGSPLTTILKVLAASALNTCVAVARSPNNAIASMSASPAFGTSMKMENQQMTKKSSKSLDLLETPSDSLKFLNRAVTRMPAHKLLECTVNEVEDVKIVLKILPVFGCTIMLNCCLAQLSTFSVQQAASMDTKLGSFKVPPASLPVFPVIFIMILAPVYDHLIIPFARKVTKTETGISHLQRIGIGLVLSIVAMGIAALVEIKRKRVATDTG-LDTTQPLPITFFWIAFQYLCLGSADLFSLAGLLEFFFTEAPSSMRSLATSLSWASLAMGYFLSTVIVSIVNSATGSAKNKPWLSGPNLNHYHLERFYWLMCALSILNFLHYLFWANRYKYKA 576
MEVE+ L+ WDGYVDWR +PALRGRHGGMLAASFVLVVE++ENLA+LANASNLV+YLSE+MHFSP +SANSVTNFMGTAFLLALLGGFLSDAF +Y IYL SA +EFLG +ILT+QA+S SL+P +CE ++PC++V G KAAMLF+GLYL ALG+GGIKGSL HGAEQFDE TP+GRKQRSTFFNYFVFSL+ GALIAVTLVVWIEDN+GW WGFG+ST TIFLSIP+FLAGS FYRNKIP GSPLTTI KVL AS LNTC+ RS +NAIASMS SP+ + E K +KS E+PS+SLKFLNRAV PA +L+C+V ++E+VKIV+KILPVFGCTIMLNCCLAQLSTFSVQQAA+M+TKLGS KVPPASLP+FPV+FIMILAP+YDH+IIPFAR+VTK+ETGI+HLQRIG+GLVLSIVAM +AALVEIKRKRVAT++G LD+T+PLPITFFWIA QYL LGSADLF+LAGLLEFFFTEAP SMRSLAT+LSWASLAMGY+LSTVIVSIVNS TG +K+KPWLSG NLN YHLERFYWLMC LS LNFLHYLFWA +YKY++
Sbjct: 1 MEVENPLSNTWDGYVDWRGRPALRGRHGGMLAASFVLVVEVMENLAYLANASNLVLYLSEYMHFSPSESANSVTNFMGTAFLLALLGGFLSDAFFTSYQIYLISALIEFLGLVILTIQARSGSLKPPKCELGNPDIPCQQVHGGKAAMLFSGLYLVALGVGGIKGSLPAHGAEQFDESTPRGRKQRSTFFNYFVFSLSAGALIAVTLVVWIEDNKGWEWGFGVSTLTIFLSIPIFLAGSVFYRNKIPLGSPLTTICKVLIASLLNTCMP--RSSSNAIASMSTSPSPTPFPEEEIATGNGKDTKSSH--ESPSESLKFLNRAVVNKPACDMLKCSVQQLEEVKIVIKILPVFGCTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPIFPVVFIMILAPLYDHVIIPFARRVTKSETGITHLQRIGVGLVLSIVAMAVAALVEIKRKRVATESGLLDSTKPLPITFFWIALQYLFLGSADLFTLAGLLEFFFTEAPFSMRSLATALSWASLAMGYYLSTVIVSIVNSITGDSKHKPWLSGSNLNQYHLERFYWLMCVLSGLNFLHYLFWATKYKYRS 577
BLAST of XM_017364557.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2I4FHK4 ((protein NRT1/ PTR FAMILY 4.6-like {ECO:0000313|RefSeq:XP_018831139.1}))
HSP 1 Score: 877.47 bits (2266), Expect = 0.000e+0
Identity = 436/586 (74.40%), Postives = 498/586 (84.98%), Query Frame = 0
Match: A0A2I4FHK4 ((protein NRT1/ PTR FAMILY 4.6-like {ECO:0000313|RefSeq:XP_018831139.1}))
HSP 1 Score: 877.47 bits (2266), Expect = 0.000e+0
Identity = 436/586 (74.40%), Postives = 498/586 (84.98%), Query Frame = 0
Query: 1 MEVEHQLARWDGYVDWRNKPALRGRHGGMLAASFVLVVEILENLAFLANASNLVMYLSEHMHFSPKDSANSVTNFMGTAFLLALLGGFLSDAFLNTYFIYLSSAFLEFLGWLILTVQAQSASLRPAEC---EANVPCRRVGGAKAAMLFAGLYLAALGIGGIKGSLATHGAEQFDEDTPQGRKQRSTFFNYFVFSLATGALIAVTLVVWIEDNRGWVWGFGISTFTIFLSIPLFLAGSKFYRNKIPCGSPLTTILKVLAASALNTCVA------VARSPNNAIASMSASPAFGTSMKMENQQMTKKSSKSLDLLETPSDSLKFLNRAVTRMPAHKLLECTVNEVEDVKIVLKILPVFGCTIMLNCCLAQLSTFSVQQAASMDTKLGSFKVPPASLPVFPVIFIMILAPVYDHLIIPFARKVTKTETGISHLQRIGIGLVLSIVAMGIAALVEIKRKRVATDTG-LDTTQPLPITFFWIAFQYLCLGSADLFSLAGLLEFFFTEAPSSMRSLATSLSWASLAMGYFLSTVIVSIVNSATGSAKNKPWLSGPNLNHYHLERFYWLMCALSILNFLHYLFWANRYKYKA 576
ME E QL RW+GYVDWR +PALRGRHGGMLAASFVLVVEILENLAFLANASNLV+YLSE+MHFSP SAN+VTNFMGTAFLLALLGGFLSDAF TY IYL SA +EFLG ++LTVQA+S SL+P+ C ++PC+ G +AAMLF GLYL ALG+GGIKGSL HGAEQFDEDTPQGRKQRSTFFNYFVF L+ G L+AVTLVVWIEDN+GW WGFGIST +I LSIPLFLAGS YRNKIPCGSPLTTILKVL A+ LN+C++ ++RSP+NA+ASM+ SP+ T E ++ ++K+ + + P++S KFLN A P HK LECT+ +VEDVKIVLK+ P+F CTIMLNCCLAQLSTFSVQQAA+MDTKLGS KVPPASLP+FPV FIMILAPVYDHLIIPFARKVTK+E GI+HLQRIGIGLVLSI+AM AALVEIKRKRVAT++G LD+ PLPITFFWIAFQYL LGSADLF+LAGLLEFFFTEAPSSMRSLATS SWASLAMGY+LS+VIVSIVN+ TG +K++PWLSG NLNH+ LERFYWLMC LS LNFL+YL WA RYKY++
Sbjct: 1 MEEEQQLTRWEGYVDWRRRPALRGRHGGMLAASFVLVVEILENLAFLANASNLVLYLSEYMHFSPTKSANNVTNFMGTAFLLALLGGFLSDAFFTTYHIYLISAVIEFLGLVVLTVQARSPSLKPSACGPANLDIPCQEAHGGRAAMLFLGLYLVALGVGGIKGSLPAHGAEQFDEDTPQGRKQRSTFFNYFVFCLSCGGLVAVTLVVWIEDNKGWEWGFGISTISILLSIPLFLAGSATYRNKIPCGSPLTTILKVLVAATLNSCISRSPKGCISRSPSNAVASMATSPSSPTFTSKEAEE----NAKARESTDAPTESFKFLNIAAVDNPVHKALECTIQQVEDVKIVLKLFPIFACTIMLNCCLAQLSTFSVQQAATMDTKLGSLKVPPASLPIFPVTFIMILAPVYDHLIIPFARKVTKSEMGITHLQRIGIGLVLSIIAMATAALVEIKRKRVATNSGLLDSEHPLPITFFWIAFQYLFLGSADLFTLAGLLEFFFTEAPSSMRSLATSFSWASLAMGYYLSSVIVSIVNNVTGISKHRPWLSGSNLNHFQLERFYWLMCVLSALNFLNYLLWAIRYKYRS 582
BLAST of XM_017364557.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A833U3U8 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5449713.1}) (Fragment))
HSP 1 Score: 875.93 bits (2262), Expect = 0.000e+0
Identity = 436/586 (74.40%), Postives = 498/586 (84.98%), Query Frame = 0
Match: A0A833U3U8 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5449713.1}) (Fragment))
HSP 1 Score: 875.93 bits (2262), Expect = 0.000e+0
Identity = 436/586 (74.40%), Postives = 498/586 (84.98%), Query Frame = 0
Query: 1 MEVEHQLARWDGYVDWRNKPALRGRHGGMLAASFVLVVEILENLAFLANASNLVMYLSEHMHFSPKDSANSVTNFMGTAFLLALLGGFLSDAFLNTYFIYLSSAFLEFLGWLILTVQAQSASLRPAEC---EANVPCRRVGGAKAAMLFAGLYLAALGIGGIKGSLATHGAEQFDEDTPQGRKQRSTFFNYFVFSLATGALIAVTLVVWIEDNRGWVWGFGISTFTIFLSIPLFLAGSKFYRNKIPCGSPLTTILKVLAASALNTCVA------VARSPNNAIASMSASPAFGTSMKMENQQMTKKSSKSLDLLETPSDSLKFLNRAVTRMPAHKLLECTVNEVEDVKIVLKILPVFGCTIMLNCCLAQLSTFSVQQAASMDTKLGSFKVPPASLPVFPVIFIMILAPVYDHLIIPFARKVTKTETGISHLQRIGIGLVLSIVAMGIAALVEIKRKRVATDTG-LDTTQPLPITFFWIAFQYLCLGSADLFSLAGLLEFFFTEAPSSMRSLATSLSWASLAMGYFLSTVIVSIVNSATGSAKNKPWLSGPNLNHYHLERFYWLMCALSILNFLHYLFWANRYKYKA 576
ME E QL RW+GYVDWR +PALRGRHGGMLAASFVLVVEILENLAFLANASNLV+YLSE+MHFSP SAN+VTNFMGTAFLLALLGGFLSDAF TY IYL SA +EFLG ++LTVQA+S SL+P+ C ++PC+ G +AAMLF GLYL ALG+GGIKGSL HGAEQFDEDTPQGRKQRSTFFNYFVF L+ G L+AVTLVVWIEDN+GW WGFGIST +I LSIPLFLAGS YRNKIPCGSPLTTILKVL A+ LN+C++ ++RSP+NA+ASM+ SP+ T E ++ ++K+ + + P++S KFLN A P HK LECT+ +VEDVKIVLK+ P+F CTIMLNCCLAQLSTFSVQQAA+MDTKLGS KVPPASLP+FPV FIMILAPVYDHLIIPFARKVTK+E GI+HLQRIGIGLVLSI+AM AALVEIKRKRVAT++G LD+ PLPITFFWIAFQYL LGSADLF+LAGLLEFFFTEAPSSMRSLATS SWASLAMGY+LS+VIVSIVN+ TG +K++PWLSG NLNH+ LERFYWLMC LS LNFL+YL WA RYKY++
Sbjct: 72 MEEEQQLTRWEGYVDWRRRPALRGRHGGMLAASFVLVVEILENLAFLANASNLVLYLSEYMHFSPTKSANNVTNFMGTAFLLALLGGFLSDAFFTTYHIYLISAVIEFLGLVVLTVQARSPSLKPSACGPANLDIPCQEAHGGRAAMLFLGLYLVALGVGGIKGSLPAHGAEQFDEDTPQGRKQRSTFFNYFVFCLSCGGLVAVTLVVWIEDNKGWEWGFGISTISILLSIPLFLAGSATYRNKIPCGSPLTTILKVLVAATLNSCISRSPKGCISRSPSNAVASMATSPSSPTFTSKEAEE----NAKARESTDAPTESFKFLNIAAVDNPVHKALECTIQQVEDVKIVLKLFPIFACTIMLNCCLAQLSTFSVQQAATMDTKLGSLKVPPASLPIFPVTFIMILAPVYDHLIIPFARKVTKSEMGITHLQRIGIGLVLSIIAMATAALVEIKRKRVATNSGLLDSEHPLPITFFWIAFQYLFLGSADLFTLAGLLEFFFTEAPSSMRSLATSFSWASLAMGYYLSSVIVSIVNNVTGISKHRPWLSGSNLNHFQLERFYWLMCVLSALNFLNYLLWAIRYKYRS 653
BLAST of XM_017364557.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9HHL3 ((H+/oligopeptide symporter {ECO:0000313|EMBL:PIN17022.1}))
HSP 1 Score: 872.463 bits (2253), Expect = 0.000e+0
Identity = 444/579 (76.68%), Postives = 501/579 (86.53%), Query Frame = 0
Match: A0A2G9HHL3 ((H+/oligopeptide symporter {ECO:0000313|EMBL:PIN17022.1}))
HSP 1 Score: 872.463 bits (2253), Expect = 0.000e+0
Identity = 444/579 (76.68%), Postives = 501/579 (86.53%), Query Frame = 0
Query: 1 MEVEHQLA-RWDGYVDWRNKPALRGRHGGMLAASFVLVVEILENLAFLANASNLVMYLSEHMHFSPKDSANSVTNFMGTAFLLALLGGFLSDAFLNTYFIYLSSAFLEFLGWLILTVQAQSASLRPAECEANVPCRRVGGAKAAMLFAGLYLAALGIGGIKGSLATHGAEQFDEDTPQGRKQRSTFFNYFVFSLATGALIAVTLVVWIEDNRGWVWGFGISTFTIFLSIPLFLAGSKFYRNKIPCGSPLTTILKVLAASALNTCVAVARSPNNAIASMSASPAFGTSMKMENQQMTKKSS-KSLDLLETPSDSLKFLNRAVTRMPAHKLLECTVNEVEDVKIVLKILPVFGCTIMLNCCLAQLSTFSVQQAASMDTKLGSFKVPPASLPVFPVIFIMILAPVYDHLIIPFARKVTKTETGISHLQRIGIGLVLSIVAMGIAALVEIKRKRVATDTG-LDTTQPLPITFFWIAFQYLCLGSADLFSLAGLLEFFFTEAPSSMRSLATSLSWASLAMGYFLSTVIVSIVNSATGSAKNKPWLSGPNLNHYHLERFYWLMCALSILNFLHYLFWANRYKYKA 576
MEVE+QL+ WDGY+DWR KPALR RHGGMLAASFVLVVEILENLAFLANASNLV+YL+++MHFSP +SANSVTNFMGTAFLLALLGGFLSDAF TY IYL SA EFLG +ILT+QA S+SL+P +CE +PC +V GAKAAMLF GLYL ALG+GGIKGSL +HGAEQFDE+TP GRKQRSTFFNYFVFSL+ G LIAVTLVVWIEDN+GW WGFGIST TI LSIP+FL GS+FYRNKIP GSPLTTI KVL AS LNTC + RS +NAIASMS SP + + +Q+ K+ + ++PS SLKFLNR+V PA +L+C+V E+EDVKIV+KILP+F CTIMLNCCLAQLSTFSVQQAA+MDT LGS VPPASLPVFPVIFIM+LAP+YDH+IIPFAR+VTK+E GISHLQRIGIGLVLSI+AM +AALVEIKRKRVATD+G LD+ +PLPITFFWIAFQYL LGSADLF+LAGLLEFFFTEAP SMRSLATSLSWASLAMGY+LSTVIVSIV S TG +K+KPWLSG NLNHYHLERFYWLMC LS LNFLHYLFWA +YKY++
Sbjct: 1 MEVENQLSSNWDGYMDWRGKPALRDRHGGMLAASFVLVVEILENLAFLANASNLVLYLADYMHFSPSESANSVTNFMGTAFLLALLGGFLSDAFFTTYHIYLISAVTEFLGLVILTIQAHSSSLKPPKCEPEMPCEQVHGAKAAMLFLGLYLTALGVGGIKGSLPSHGAEQFDENTPNGRKQRSTFFNYFVFSLSCGGLIAVTLVVWIEDNKGWQWGFGISTLTILLSIPIFLGGSRFYRNKIPLGSPLTTIGKVLTASLLNTC--MPRSSSNAIASMSGSP---SPTPLSDQESAPKTQISTSSSDQSPSQSLKFLNRSVINEPAFSILKCSVQELEDVKIVIKILPIFACTIMLNCCLAQLSTFSVQQAATMDTNLGSLNVPPASLPVFPVIFIMVLAPLYDHVIIPFARRVTKSEMGISHLQRIGIGLVLSILAMAVAALVEIKRKRVATDSGFLDSNKPLPITFFWIAFQYLFLGSADLFTLAGLLEFFFTEAPFSMRSLATSLSWASLAMGYYLSTVIVSIVKSVTGDSKHKPWLSGKNLNHYHLERFYWLMCVLSALNFLHYLFWAMKYKYRS 574
BLAST of XM_017364557.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J1BK74 ((protein NRT1/ PTR FAMILY 4.6 {ECO:0000313|RefSeq:XP_021299856.1}))
HSP 1 Score: 872.463 bits (2253), Expect = 0.000e+0
Identity = 431/581 (74.18%), Postives = 497/581 (85.54%), Query Frame = 0
Match: A0A6J1BK74 ((protein NRT1/ PTR FAMILY 4.6 {ECO:0000313|RefSeq:XP_021299856.1}))
HSP 1 Score: 872.463 bits (2253), Expect = 0.000e+0
Identity = 431/581 (74.18%), Postives = 497/581 (85.54%), Query Frame = 0
Query: 1 MEVEHQLARWDGYVDWRNKPALRGRHGGMLAASFVLVVEILENLAFLANASNLVMYLSEHMHFSPKDSANSVTNFMGTAFLLALLGGFLSDAFLNTYFIYLSSAFLEFLGWLILTVQAQSASLRPAECEAN----VPCRRVGGAKAAMLFAGLYLAALGIGGIKGSLATHGAEQFDEDTPQGRKQRSTFFNYFVFSLATGALIAVTLVVWIEDNRGWVWGFGISTFTIFLSIPLFLAGSKFYRNKIPCGSPLTTILKVLAASALNTCVAVARSPNNAIASMSASPAFGTSMKMENQQMTKKSSKSLDLLETPSDSLKFLNRAVTRMPAHKLLECTVNEVEDVKIVLKILPVFGCTIMLNCCLAQLSTFSVQQAASMDTKLGSFKVPPASLPVFPVIFIMILAPVYDHLIIPFARKVTKTETGISHLQRIGIGLVLSIVAMGIAALVEIKRKRVATDTG-LDTTQPLPITFFWIAFQYLCLGSADLFSLAGLLEFFFTEAPSSMRSLATSLSWASLAMGYFLSTVIVSIVNSATGSAKNKPWLSGPNLNHYHLERFYWLMCALSILNFLHYLFWANRYKYKA 576
ME HQ + W+GYVDWRN+PALRGRHGGMLAASFVL E+LENLA+LANASNLV+YLS++MH SP SAN+VTNFMGTAFLLALLGGFLSDAF TY IYL SA +EFLG +ILTVQA++ SL+P+EC + +PC+ VGG KAAMLF GLYL ALG+GGIKGSL THG EQFDE+T QGRKQRSTFFNYFVF LA GALIAVT VVW+EDN+GW WGF IST IFLSIP+FLAGS FYRNKIP GSPLTTI KVL A+ LN+C++ RSP+NAIA+++ SP + T E ++ K+S + D L P++SLKFLNRAV PAH LEC+V +VE+VKIVLKILP+F CTI+LNCCLAQLSTFSV+QAA+M+TKLGS K+PPASLPVFPV+FI+ILAPVYDH IIPFAR+VT+TE GI+HLQRIGIGL LSI+AM +AALVEIKRKRVATD+G LD+T PLPITFFWIA QYL LGSADLF+LAGLLEFFFTEAPSSMRSLATSLSWASLAMGY+LS+VIVSIVN+ T ++ +KPWLSG +NHYHLERFYWLMC LS LNF HYLFWA RYKY++
Sbjct: 1 MEGGHQDSSWEGYVDWRNRPALRGRHGGMLAASFVLAAEVLENLAYLANASNLVLYLSKYMHLSPSKSANNVTNFMGTAFLLALLGGFLSDAFFTTYHIYLISALIEFLGLIILTVQARTPSLKPSECNPSSTPSIPCQEVGGGKAAMLFIGLYLVALGVGGIKGSLPTHGGEQFDENTQQGRKQRSTFFNYFVFCLACGALIAVTFVVWVEDNKGWEWGFAISTIAIFLSIPIFLAGSTFYRNKIPFGSPLTTIGKVLVAAMLNSCMS--RSPSNAIANLATSPCYQTEASKEAEENAKESKQQPDQL--PTESLKFLNRAVVNKPAHPALECSVQQVEEVKIVLKILPIFACTIILNCCLAQLSTFSVEQAATMNTKLGSLKIPPASLPVFPVVFIIILAPVYDHFIIPFARRVTRTEMGITHLQRIGIGLFLSIIAMAVAALVEIKRKRVATDSGLLDSTNPLPITFFWIALQYLFLGSADLFTLAGLLEFFFTEAPSSMRSLATSLSWASLAMGYYLSSVIVSIVNNVTDNSGHKPWLSGHTINHYHLERFYWLMCVLSTLNFFHYLFWAMRYKYRS 577
BLAST of XM_017364557.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P5XDH3 ((protein NRT1/ PTR FAMILY 4.6-like isoform X1 {ECO:0000313|RefSeq:XP_022725712.1}))
HSP 1 Score: 872.078 bits (2252), Expect = 0.000e+0
Identity = 422/572 (73.78%), Postives = 484/572 (84.62%), Query Frame = 0
Match: A0A6P5XDH3 ((protein NRT1/ PTR FAMILY 4.6-like isoform X1 {ECO:0000313|RefSeq:XP_022725712.1}))
HSP 1 Score: 872.078 bits (2252), Expect = 0.000e+0
Identity = 422/572 (73.78%), Postives = 484/572 (84.62%), Query Frame = 0
Query: 9 RWDGYVDWRNKPALRGRHGGMLAASFVLVVEILENLAFLANASNLVMYLSEHMHFSPKDSANSVTNFMGTAFLLALLGGFLSDAFLNTYFIYLSSAFLEFLGWLILTVQAQSASLRPAECEANVP---CRRVGGAKAAMLFAGLYLAALGIGGIKGSLATHGAEQFDEDTPQGRKQRSTFFNYFVFSLATGALIAVTLVVWIEDNRGWVWGFGISTFTIFLSIPLFLAGSKFYRNKIPCGSPLTTILKVLAASALNTCVAVARSPNNAIASMSASPAFGTSMKMENQQMTKKSSKSLDLLETPSDSLKFLNRAVTRMPAHKLLECTVNEVEDVKIVLKILPVFGCTIMLNCCLAQLSTFSVQQAASMDTKLGSFKVPPASLPVFPVIFIMILAPVYDHLIIPFARKVTKTETGISHLQRIGIGLVLSIVAMGIAALVEIKRKRVATDTG-LDTTQPLPITFFWIAFQYLCLGSADLFSLAGLLEFFFTEAPSSMRSLATSLSWASLAMGYFLSTVIVSIVNSATGSAKNKPWLSGPNLNHYHLERFYWLMCALSILNFLHYLFWANRYKYKA 576
+W+GY DWRN+PALRGRHGGMLAASFVLVVE+LENLA+LANASNLV+YLS+HMH SP SAN+VTNFMGTAFLLALLGG LSDAF TY IYL SA +EFLG +IL +QA++ SL+P EC + P C+ VGG KAAMLF GLYL ALG+GGIKGSL THGAEQFDE TPQGRKQRSTFFNYF+F L+ GALIAVT VVWIEDN+GW WGF IST I LSIP+FL GS FYRNKIP GSPL TI KVL A+ LN+C++ RSP NAIA ++ASP + T E + K+S K D + P++SLKFLNRAV PA+ EC++ +VE+VKIVLKILP+F CTI++NCCLAQLSTFSV+QAA+M++KLGS K+PPASLPVFPV+FIMILAPVYDH IIPFARKVTKTE GI+HLQRIGIGL LSI+AM +AALVEIKRKRVATD+G LD+T PLPITFFWIA QYL LGSADLF+L GLLEFFFTEAPSSMRSLATSLSWASLAMGY+LS+VIVSIVN+ T ++ +KPWLSG +NHYHLERFYWLMC LS LNFLHYLF A RYKY++
Sbjct: 167 KWEGYADWRNRPALRGRHGGMLAASFVLVVEVLENLAYLANASNLVLYLSKHMHLSPSKSANNVTNFMGTAFLLALLGGCLSDAFFTTYHIYLISALIEFLGLIILAMQARTPSLKPPECNPSTPSNPCQEVGGGKAAMLFIGLYLVALGVGGIKGSLPTHGAEQFDESTPQGRKQRSTFFNYFIFCLSCGALIAVTFVVWIEDNKGWEWGFAISTVAILLSIPIFLVGSTFYRNKIPFGSPLKTISKVLVAAMLNSCMS--RSPRNAIAYLAASPYYPTETSKEAEDNAKQS-KQPD--QIPTESLKFLNRAVVNKPANPAFECSLQQVEEVKIVLKILPIFACTIVINCCLAQLSTFSVEQAATMNSKLGSLKIPPASLPVFPVVFIMILAPVYDHFIIPFARKVTKTEMGITHLQRIGIGLFLSIIAMAVAALVEIKRKRVATDSGLLDSTNPLPITFFWIALQYLFLGSADLFTLTGLLEFFFTEAPSSMRSLATSLSWASLAMGYYLSSVIVSIVNNLTDNSGHKPWLSGHTINHYHLERFYWLMCVLSALNFLHYLFRAMRYKYRS 733
BLAST of XM_017364557.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7D3T1 ((Nitrate transporter 1.2 {ECO:0000313|EMBL:KAF5741014.1}))
HSP 1 Score: 870.537 bits (2248), Expect = 0.000e+0
Identity = 434/579 (74.96%), Postives = 494/579 (85.32%), Query Frame = 0
Match: A0A7J7D3T1 ((Nitrate transporter 1.2 {ECO:0000313|EMBL:KAF5741014.1}))
HSP 1 Score: 870.537 bits (2248), Expect = 0.000e+0
Identity = 434/579 (74.96%), Postives = 494/579 (85.32%), Query Frame = 0
Query: 2 EVEHQLARWDGYVDWRNKPALRGRHGGMLAASFVLVVEILENLAFLANASNLVMYLSEHMHFSPKDSANSVTNFMGTAFLLALLGGFLSDAFLNTYFIYLSSAFLEFLGWLILTVQAQSASLRPAECE---ANVPCRRVGGAKAAMLFAGLYLAALGIGGIKGSLATHGAEQFDEDTPQGRKQRSTFFNYFVFSLATGALIAVTLVVWIEDNRGWVWGFGISTFTIFLSIPLFLAGSKFYRNKIPCGSPLTTILKVLAASALNTCVAVARSPNNAIASMSASPAFGTSMKMENQQMTKKSSKSLDLLETPSDSLKFLNRAVTRMPAHKLLECTVNEVEDVKIVLKILPVFGCTIMLNCCLAQLSTFSVQQAASMDTKLGSFKVPPASLPVFPVIFIMILAPVYDHLIIPFARKVTKTETGISHLQRIGIGLVLSIVAMGIAALVEIKRKRVATDTG-LDTTQPLPITFFWIAFQYLCLGSADLFSLAGLLEFFFTEAPSSMRSLATSLSWASLAMGYFLSTVIVSIVNSATGSAKNKPWLSGPNLNHYHLERFYWLMCALSILNFLHYLFWANRYKYKA 576
E H+ RWDGYVDWRN+PA+RG HGGMLAASFVLVVE++EN+AFLANASNLV+YLS++MHFSP SAN VTNFMGT+FLLALLGGFLSDAF TY IYL SAF++FLG +ILTVQA+ SL+P +C + +PC+ V G KAAMLF GLYLAALG+GGIKGSL HGAEQFDE TPQGRKQRSTFFNYFVF L+ GALIAVTLVVWIEDN+GW WGFGIST IFLSIP+FL+GS FY+NKIP GSPLTTI KVL A+++NT V+RSP+NAIA+MS +P S + Q + +K++ E P+ SL FLNRAV P L CTV +VE+VKIVLKILP+F CT MLNCCLAQLSTFSVQQAA+MDT LGS KVPPASLPVFPV+FIMILAP+YDHLIIPFAR+VTK+E GISHLQRIGIGLVLSIVAM +AALVEIKRKRVAT+TG LD T PLPITFFW+AFQYL LGSADLFSLAGLLEFFFTEAP+SMRSLATSLS+ASLAMGY+LS+VIVSIVN TG++K+KPWLSG NLN YHLERFYWLMC LS+LNF HYLFWA+RYKY++
Sbjct: 3 EQVHETGRWDGYVDWRNRPAIRGTHGGMLAASFVLVVEVMENMAFLANASNLVIYLSDYMHFSPSKSANDVTNFMGTSFLLALLGGFLSDAFFTTYHIYLISAFVQFLGLVILTVQAREPSLKPPKCSLGSSTIPCQEVHGGKAAMLFLGLYLAALGVGGIKGSLPPHGAEQFDETTPQGRKQRSTFFNYFVFCLSCGALIAVTLVVWIEDNKGWEWGFGISTIVIFLSIPIFLSGSTFYKNKIPSGSPLTTIFKVLVAASVNTN-CVSRSPSNAIANMSINP----SSPSQKNQTPRDPAKAI---EIPTKSLNFLNRAVVNKPLRPSLACTVQQVEEVKIVLKILPIFACTFMLNCCLAQLSTFSVQQAATMDTNLGSLKVPPASLPVFPVLFIMILAPIYDHLIIPFARRVTKSEMGISHLQRIGIGLVLSIVAMAVAALVEIKRKRVATNTGQLDETNPLPITFFWVAFQYLFLGSADLFSLAGLLEFFFTEAPASMRSLATSLSFASLAMGYYLSSVIVSIVNEVTGNSKHKPWLSGANLNQYHLERFYWLMCVLSVLNFFHYLFWASRYKYRS 573
BLAST of XM_017364557.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2LB93 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:QL03p065820:mrna}))
HSP 1 Score: 870.152 bits (2247), Expect = 0.000e+0
Identity = 433/578 (74.91%), Postives = 495/578 (85.64%), Query Frame = 0
Match: A0A7N2LB93 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:QL03p065820:mrna}))
HSP 1 Score: 870.152 bits (2247), Expect = 0.000e+0
Identity = 433/578 (74.91%), Postives = 495/578 (85.64%), Query Frame = 0
Query: 1 MEVEHQLARWDGYVDWRNKPALRGRHGGMLAASFVLVVEILENLAFLANASNLVMYLSEHMHFSPKDSANSVTNFMGTAFLLALLGGFLSDAFLNTYFIYLSSAFLEFLGWLILTVQAQSASLRPAECEA---NVPCRRVGGAKAAMLFAGLYLAALGIGGIKGSLATHGAEQFDEDTPQGRKQRSTFFNYFVFSLATGALIAVTLVVWIEDNRGWVWGFGISTFTIFLSIPLFLAGSKFYRNKIPCGSPLTTILKVLAASALNTCVAVARSPNNAIASMSASPAFGTSMKMENQQMTKKSSKSLDLLETPSDSLKFLNRAVTRMPAHKLLECTVNEVEDVKIVLKILPVFGCTIMLNCCLAQLSTFSVQQAASMDTKLGSFKVPPASLPVFPVIFIMILAPVYDHLIIPFARKVTKTETGISHLQRIGIGLVLSIVAMGIAALVEIKRKRVATDTG-LDTTQPLPITFFWIAFQYLCLGSADLFSLAGLLEFFFTEAPSSMRSLATSLSWASLAMGYFLSTVIVSIVNSATGSAKNKPWLSGPNLNHYHLERFYWLMCALSILNFLHYLFWANRYKY 574
ME EHQ RW+GYV+WRNKPALRG HGGMLAASFVLVVEILENLA+LANASNLV+YLSE+MHFSP SAN+VTNFMGTAFLLALLGGFLSDAF TY IYL SA +E LG +L VQA+S SL P C+ N+PC+ V GAKAAMLF GLYL ALG+GGIKGSL +HGAEQFDE TPQGRKQRSTFFNYFVF L+ G LIAVT VVWIEDN+GW WGFG ST +IFLSIP+FLAGS FYRNKIP GSPLTTI KVL A+ LN C + RSP+NA+ASM+ +P+ T N + +++++K+++ +T ++SLKFLN AV +P H LECTV +VEDVKIVLK+LP+F CTIMLNCCLAQLSTFSVQQAA+M+TKLGS KVPPASLP+FPV FIMILAP+YDH IIPFARK TK+E GI+HLQRIGIGLVLSI+AM IAALVEIKRKRVAT++G LD+ PLPITFFWIAFQYL LGSADLF+LAGLLEFFFTEAP+SMRSLATSLS+ASLA+GY+LSTVIVSIVN+ TG +K+KPWLSG N+NHYHL+RFYWLMC LS LNFLHYL WA RY+Y
Sbjct: 1 MEEEHQFGRWEGYVNWRNKPALRGNHGGMLAASFVLVVEILENLAYLANASNLVLYLSEYMHFSPSKSANNVTNFMGTAFLLALLGGFLSDAFFTTYHIYLISAVIELLGLSVLFVQARSPSLMPPACDPTNLNIPCQEVYGAKAAMLFIGLYLVALGVGGIKGSLPSHGAEQFDESTPQGRKQRSTFFNYFVFCLSCGGLIAVTFVVWIEDNKGWQWGFGFSTISIFLSIPIFLAGSAFYRNKIPSGSPLTTIFKVLVAATLNCCTS--RSPSNAVASMTTNPSSPT----PNGKESEENAKTMESSQTATESLKFLNNAVVDLPVHNALECTVQQVEDVKIVLKVLPIFACTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPIFPVTFIMILAPLYDHFIIPFARKATKSEMGITHLQRIGIGLVLSIIAMVIAALVEIKRKRVATNSGMLDSENPLPITFFWIAFQYLFLGSADLFTLAGLLEFFFTEAPASMRSLATSLSFASLALGYYLSTVIVSIVNNVTGHSKHKPWLSGSNINHYHLDRFYWLMCVLSALNFLHYLLWACRYEY 572
| Match Name | Stats | Description |
|---|---|---|
| A0A5B6ZKJ5 | E-Value: 0.000e+0, PID: 75.65 | (Putative Nitrate transporter 1:2 {ECO:0000313|EMB... [more] |
| A0A5B7CC55 | E-Value: 0.000e+0, PID: 76.91 | (Putative Nitrate transporter 1:2 {ECO:0000313|EMB... [more] |
| A0A6I9SPD3 | E-Value: 0.000e+0, PID: 76.59 | (protein NRT1/ PTR FAMILY 4.6 {ECO:0000313|RefSeq:... [more] |
| A0A2I4FHK4 | E-Value: 0.000e+0, PID: 74.40 | (protein NRT1/ PTR FAMILY 4.6-like {ECO:0000313|Re... [more] |
| A0A833U3U8 | E-Value: 0.000e+0, PID: 74.40 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5449... [more] |
| A0A2G9HHL3 | E-Value: 0.000e+0, PID: 76.68 | (H+/oligopeptide symporter {ECO:0000313|EMBL:PIN17... [more] |
| A0A6J1BK74 | E-Value: 0.000e+0, PID: 74.18 | (protein NRT1/ PTR FAMILY 4.6 {ECO:0000313|RefSeq:... [more] |
| A0A6P5XDH3 | E-Value: 0.000e+0, PID: 73.78 | (protein NRT1/ PTR FAMILY 4.6-like isoform X1 {ECO... [more] |
| A0A7J7D3T1 | E-Value: 0.000e+0, PID: 74.96 | (Nitrate transporter 1.2 {ECO:0000313|EMBL:KAF5741... [more] |
| A0A7N2LB93 | E-Value: 0.000e+0, PID: 74.91 | (Uncharacterized protein {ECO:0000313|EnsemblPlant... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |