Resource Type:
Polypeptide
Name:
XM_017364869.1
Identifier:
XM_017364869.1-protein
Sequence:
MQTQTQPPNTTIYYLSTTIIFSLLFILYLSTFSPTPSLSSDPFLFPHHPT
NSSTPSIAYLISGSKGDSGRVIRVLLSAYHPKNQYLLHLDLTASKAEREN
LALEVEQVPIFKAAKNVNVIGKADFRDPYGCSSVSATLHGAAMLLRLSEN
WDWFINLDAHDYPLVTQDDLLHILSYLPKDLNFVNHTSYIGWRDSRRLKP
IVVDPGLYLSQKHAISYASQKRELPGAYRLFTGSGSVILSRKLIEFCILG
TENLARTLLMYISNTPSPQSVYFQTLICNSQQFSRTVINHNLQYSALGVR
NEPRHLNSTDLHHLIDSGAAFASPFLPDDPVLDLIDEKILGRVPGKPAPG
GWCVGGNGNDTCLEWGNAEVLRPGPGARRLERLFLDLLSNGTLGSDQCVL
M
Sequence Length:
401
Sequence Checksum:
903f5e0d0241e68e1bd1733070034de9
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017364869.1, derives from mRNA, XM_017364869.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017364869.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017364869.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5C3H8 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8548487.1}))
HSP 1 Score: 543.888 bits (1400), Expect = 0.000e+0
Identity = 278/437 (63.62%), Postives = 328/437 (75.06%), Query Frame = 0
Match: A0A5J5C3H8 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8548487.1}))
HSP 1 Score: 543.888 bits (1400), Expect = 0.000e+0
Identity = 278/437 (63.62%), Postives = 328/437 (75.06%), Query Frame = 0
Query: 1 MQTQTQPP---------------NTTIYYLSTTIIFSLLFILYLSTFSPTPSLSSDP-FLFP--------HH-------------PTNSSTPSIAYLISGSKGDSGRVIRVLLSAYHPKNQYLLHLDLTASKAERENLALEVEQVPIFKAAKNVNVIGKADFRDPYGCSSVSATLHGAAMLLRLSENWDWFINLDAHDYPLVTQDDLLHILSYLPKDLNFVNHTSYIGWRDSRRLKPIVVDPGLYLSQKHAISYASQKRELPGAYRLFTGSGSVILSRKLIEFCILGTENLARTLLMYISNTPSPQSVYFQTLICNSQQFSRTVINHNLQYSALGVRNEPRHLNSTDLHHLIDSGAAFASPFLPDDPVLDLIDEKILGRVPGKPAPGGWCVGGNGNDTCLEWGNAEVLRPGPGARRLERLFLDLLSNGTLGSDQCVL 400
MQ TQPP TT+Y+L T IFSLLFIL LST S PS FLFP HH P+ + PSIAYLISGSK DSGR++R+L + YHP N YLLHLDL+A +++R+ LAL V +P+FKAA+NVNVIGKADF G SS+S+TLHGA++LLR+S+NWDWFINL A DYPLVTQDDLLHILSYLPKDLNF NHTSYIGWR+SRRLKPI+VDPGLYL +++ I YA+QKR+LP AYR+FTG S ILSRK IEFCILGT+NL RTLLMY++N PS SVYF T++CNSQQF+RT INH LQY++ R EPRHLNS+D + +I SGAAFASPFLPDDPVLD ID +ILGR PGKP PGGWC+G NDTC WG+A++LRPGPGARRLE+ ++LLSNGT S QCV+
Sbjct: 1 MQKPTQPPPSCTTAALTIIKDNRTTTVYWLVATSIFSLLFILSLSTTSQPPSTPPPDPFLFPSRQPQNSPHHNRLLFLNQRSPSSPSLPTAPSIAYLISGSKNDSGRILRLLFAIYHPHNYYLLHLDLSAPQSDRDFLALTVHSIPVFKAAQNVNVIGKADFAYRKGSSSLSSTLHGASILLRISDNWDWFINLSASDYPLVTQDDLLHILSYLPKDLNFANHTSYIGWRESRRLKPIIVDPGLYLLEQNEIFYATQKRDLPDAYRIFTGPSSAILSRKFIEFCILGTDNLPRTLLMYLANVPSSLSVYFPTILCNSQQFNRTTINHGLQYTSFDTRQEPRHLNSSDFNDVIQSGAAFASPFLPDDPVLDRIDREILGRSPGKPLPGGWCLGEPENDTCAVWGDADILRPGPGARRLEKRIVELLSNGTFRSHQCVI 437
BLAST of XM_017364869.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7C349 ((Putative xylosyltransferase 1 {ECO:0000313|EMBL:MPA75335.1}) (2.4.1.- {ECO:0000313|EMBL:MPA75335.1}))
HSP 1 Score: 531.946 bits (1369), Expect = 0.000e+0
Identity = 249/355 (70.14%), Postives = 297/355 (83.66%), Query Frame = 0
Match: A0A5B7C349 ((Putative xylosyltransferase 1 {ECO:0000313|EMBL:MPA75335.1}) (2.4.1.- {ECO:0000313|EMBL:MPA75335.1}))
HSP 1 Score: 531.946 bits (1369), Expect = 0.000e+0
Identity = 249/355 (70.14%), Postives = 297/355 (83.66%), Query Frame = 0
Query: 46 PHHPTNSSTPSIAYLISGSKGDSGRVIRVLLSAYHPKNQYLLHLDLTASKAERENLALEVEQVPIFKAAKNVNVIGKADFRDPYGCSSVSATLHGAAMLLRLSENWDWFINLDAHDYPLVTQDDLLHILSYLPKDLNFVNHTSYIGWRDSRRLKPIVVDPGLYLSQKHAISYASQKRELPGAYRLFTGSGSVILSRKLIEFCILGTENLARTLLMYISNTPSPQSVYFQTLICNSQQFSRTVINHNLQYSALGVRNEPRHLNSTDLHHLIDSGAAFASPFLPDDPVLDLIDEKILGRVPGKPAPGGWCVGGNGNDTCLEWGNAEVLRPGPGARRLERLFLDLLSNGTLGSDQCVL 400
P +P+ + PSIAYLISGS DSGR++R+L + YHPKN YLLHLDL+A +A+R+ LAL V +P+F+AA+NVNVIGKADF P G SS+S+TLHGA++LLR+S NWDWFINL A DYPLVTQDDLLHILSYLPKDLNFVNHTSYIGWR+SRRLKPI+VDPGLYLS+K+ + YA+QKRELP AYR+FTG S ILSRK IEFCILGT+NL RTLLMY++N PS SVYF T++CNSQQF+RT +NH LQY++ + EPR LNS D + LI SGAAFASPFLPDDPVLD ID++ILG PGKP PGGWC+G NDTC WG+A++LRPGPGARRLE+ ++LLSNGT S QCV+
Sbjct: 83 PSNPSLPTAPSIAYLISGSANDSGRILRLLFAIYHPKNYYLLHLDLSAPQADRDFLALTVHSIPVFRAAQNVNVIGKADFAYPKGSSSLSSTLHGASILLRISGNWDWFINLSASDYPLVTQDDLLHILSYLPKDLNFVNHTSYIGWRESRRLKPIIVDPGLYLSEKNEMFYATQKRELPDAYRIFTGPSSAILSRKFIEFCILGTDNLPRTLLMYLANVPSSLSVYFPTILCNSQQFNRTTVNHGLQYTSFDTKQEPRPLNSNDFNDLIQSGAAFASPFLPDDPVLDRIDQEILGHSPGKPLPGGWCLGEPENDTCAVWGDADILRPGPGARRLEKCIVELLSNGTFWSRQCVI 437
BLAST of XM_017364869.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4U5NBI5 ((Glycosyltransferase family 14 family protein {ECO:0000313|EMBL:TKR79701.1}))
HSP 1 Score: 509.99 bits (1312), Expect = 2.394e-178
Identity = 255/406 (62.81%), Postives = 314/406 (77.34%), Query Frame = 0
Match: A0A4U5NBI5 ((Glycosyltransferase family 14 family protein {ECO:0000313|EMBL:TKR79701.1}))
HSP 1 Score: 509.99 bits (1312), Expect = 2.394e-178
Identity = 255/406 (62.81%), Postives = 314/406 (77.34%), Query Frame = 0
Query: 10 TTIYYLSTTIIFSLLFILYLSTFS-PTPSLSS----DPFLFPHH-------PTNSSTPSIAYLISGSKGDSGRVIRVLLSAYHPKNQYLLHLDLTASKAERENLALEVEQVPIFKAAKNVNVIGKADFRDPYGCSSVSATLHGAAMLLRLSENWDWFINLDAHDYPLVTQDDLLHILSYLPKDLNFVNHTSYIGWRDSRRLKPIVVDPGLYLSQKHAISYASQKRELPGAYRLFTGSGSVILSRKLIEFCILGTENLARTLLMYISNTPSPQSVYFQTLICNSQQFSRTVINHNLQYSALG--VRNEPRHLNSTDLHHLIDSGAAFASPFLPDDPVLDLIDEKILGRVPGKPAPGGWCVGGN-GNDTCLEWGNAEVLRPGPGARRLERLFLDLLSNGTLGSDQCVL 400
TT++ + TT FSLLFI LS++S T S+S+ DP+LFP+ P++ + PSIAYLISGSKGD RV+R+L + YHPKNQYLLHLDL+AS+ +R+ LAL V+ VPIFKAA+NVNVIGKADF P G S++SATLHGAA+LLRL + WDWF+NL A DYPLVT DDLLHILSYLPKDLNFVNH+SYIGWR+SR+LKPI+VDPGLYLS+K + YA+QKR+LP ++RLFTG+ +SR LIE CILG +NL R L+MY+SNTPS YF T+ICNS+QF+RTVINHNLQY A + PR LNS++ +I SGAAFA+ F DDPVLD ID +LGR PG+ PGGWC+GG GN TCL WG+A++LRPG GA RLE+L + LLSNG S QC++
Sbjct: 22 TTLFIILTTSFFSLLFIFTLSSYSFNTSSISTHGRPDPYLFPNREPTFTKIPSDPTPPSIAYLISGSKGDLDRVLRLLYATYHPKNQYLLHLDLSASQTDRDQLALSVQSVPIFKAAQNVNVIGKADFAYPKGSSTISATLHGAAILLRLPKKWDWFVNLGAADYPLVTPDDLLHILSYLPKDLNFVNHSSYIGWRESRQLKPIIVDPGLYLSEKSEMFYATQKRDLPNSFRLFTGTSFSFVSRNLIEHCILGVDNLPRILMMYLSNTPSSLINYFPTVICNSRQFNRTVINHNLQYVAFEKPSKKVPRALNSSEFDAMIQSGAAFATQFKLDDPVLDRIDRDVLGRNPGEVVPGGWCLGGEPGNITCLAWGDADILRPGTGAARLEKLIVRLLSNGEFHSHQCIV 427
BLAST of XM_017364869.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4DE55 ((Uncharacterized protein {ECO:0000313|EMBL:THG00958.1}))
HSP 1 Score: 508.449 bits (1308), Expect = 1.418e-177
Identity = 237/344 (68.90%), Postives = 287/344 (83.43%), Query Frame = 0
Match: A0A4S4DE55 ((Uncharacterized protein {ECO:0000313|EMBL:THG00958.1}))
HSP 1 Score: 508.449 bits (1308), Expect = 1.418e-177
Identity = 237/344 (68.90%), Postives = 287/344 (83.43%), Query Frame = 0
Query: 57 IAYLISGSKGDSGRVIRVLLSAYHPKNQYLLHLDLTASKAERENLALEVEQVPIFKAAKNVNVIGKADFRDPYGCSSVSATLHGAAMLLRLSENWDWFINLDAHDYPLVTQDDLLHILSYLPKDLNFVNHTSYIGWRDSRRLKPIVVDPGLYLSQKHAISYASQKRELPGAYRLFTGSGSVILSRKLIEFCILGTENLARTLLMYISNTPSPQSVYFQTLICNSQQFSRTVINHNLQYSALGVRNEPRHLNSTDLHHLIDSGAAFASPFLPDDPVLDLIDEKILGRVPGKPAPGGWCVGGNGNDTCLEWGNAEVLRPGPGARRLERLFLDLLSNGTLGSDQCVL 400
+AYLISGS DSGR++R+L S YHP+N YLLHLDL AS+++R+ LAL V +P+F+AA+NVNVIGKADF P G S +S+TLHGA++LLR+S NWDWFINL A DYPLVTQDDLLHILSYLPKDLNFVNH+SYIGWR+SR+LKPI+VDPGLYLS++ A+ YA+QKRELP A+RLF GS S +LSR++IEFCILGT+NL RTLLMY+SNTPS SVYF TL+CNSQQF++T++NH LQY++ R E R L S D H I SGAAFASPFL DDPVLD ID +IL R+PGK PGGWC+G + N+TC WG+A++LRPG GARRLE+L + LLSNGT S QCV+
Sbjct: 97 LAYLISGSNRDSGRILRLLFSVYHPRNHYLLHLDLPASQSDRDFLALTVRSIPVFRAAQNVNVIGKADFAYPKGSSGLSSTLHGASILLRISGNWDWFINLSASDYPLVTQDDLLHILSYLPKDLNFVNHSSYIGWRESRKLKPIIVDPGLYLSERTAMFYATQKRELPDAFRLFMGSSSSVLSREVIEFCILGTDNLPRTLLMYLSNTPSSASVYFPTLLCNSQQFNKTIMNHGLQYASFDTRQEARPLKSKDFHDFIQSGAAFASPFLADDPVLDRIDREILRRIPGKLVPGGWCLGESKNNTCDVWGDADILRPGRGARRLEKLLVKLLSNGTFRSHQCVV 440
BLAST of XM_017364869.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7GQX2 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5941818.1}))
HSP 1 Score: 508.449 bits (1308), Expect = 1.507e-177
Identity = 237/344 (68.90%), Postives = 287/344 (83.43%), Query Frame = 0
Match: A0A7J7GQX2 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5941818.1}))
HSP 1 Score: 508.449 bits (1308), Expect = 1.507e-177
Identity = 237/344 (68.90%), Postives = 287/344 (83.43%), Query Frame = 0
Query: 57 IAYLISGSKGDSGRVIRVLLSAYHPKNQYLLHLDLTASKAERENLALEVEQVPIFKAAKNVNVIGKADFRDPYGCSSVSATLHGAAMLLRLSENWDWFINLDAHDYPLVTQDDLLHILSYLPKDLNFVNHTSYIGWRDSRRLKPIVVDPGLYLSQKHAISYASQKRELPGAYRLFTGSGSVILSRKLIEFCILGTENLARTLLMYISNTPSPQSVYFQTLICNSQQFSRTVINHNLQYSALGVRNEPRHLNSTDLHHLIDSGAAFASPFLPDDPVLDLIDEKILGRVPGKPAPGGWCVGGNGNDTCLEWGNAEVLRPGPGARRLERLFLDLLSNGTLGSDQCVL 400
+AYLISGS DSGR++R+L S YHP+N YLLHLDL AS+++R+ LAL V +P+F+AA+NVNVIGKADF P G S +S+TLHGA++LLR+S NWDWFINL A DYPLVTQDDLLHILSYLPKDLNFVNH+SYIGWR+SR+LKPI+VDPGLYLS++ A+ YA+QKRELP A+RLF GS S +LSR++IEFCILGT+NL RTLLMY+SNTPS SVYF TL+CNSQQF++T++NH LQY++ R E R L S D H I SGAAFASPFL DDPVLD ID +IL R+PGK PGGWC+G + N+TC WG+A++LRPG GARRLE+L + LLSNGT S QCV+
Sbjct: 95 LAYLISGSNRDSGRILRLLFSVYHPRNHYLLHLDLPASQSDRDFLALTVRSIPVFRAAQNVNVIGKADFAYPKGSSGLSSTLHGASILLRISGNWDWFINLSASDYPLVTQDDLLHILSYLPKDLNFVNHSSYIGWRESRKLKPIIVDPGLYLSERTAMFYATQKRELPDAFRLFMGSSSSVLSREVIEFCILGTDNLPRTLLMYLSNTPSSASVYFPTLLCNSQQFNKTIMNHGLQYASFDTRQEARPLKSKDFHDFIQSGAAFASPFLADDPVLDRIDREILRRIPGKLVPGGWCLGESKNNTCDVWGDADILRPGRGARRLEKLLVKLLSNGTFRSHQCVV 438
BLAST of XM_017364869.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: B9GMI2 ((Uncharacterized protein {ECO:0000313|EMBL:PNT52834.1}))
HSP 1 Score: 505.368 bits (1300), Expect = 1.351e-176
Identity = 254/406 (62.56%), Postives = 312/406 (76.85%), Query Frame = 0
Match: B9GMI2 ((Uncharacterized protein {ECO:0000313|EMBL:PNT52834.1}))
HSP 1 Score: 505.368 bits (1300), Expect = 1.351e-176
Identity = 254/406 (62.56%), Postives = 312/406 (76.85%), Query Frame = 0
Query: 10 TTIYYLSTTIIFSLLFILYLSTFS-PTPSLSS----DPFLFPHH-------PTNSSTPSIAYLISGSKGDSGRVIRVLLSAYHPKNQYLLHLDLTASKAERENLALEVEQVPIFKAAKNVNVIGKADFRDPYGCSSVSATLHGAAMLLRLSENWDWFINLDAHDYPLVTQDDLLHILSYLPKDLNFVNHTSYIGWRDSRRLKPIVVDPGLYLSQKHAISYASQKRELPGAYRLFTGSGSVILSRKLIEFCILGTENLARTLLMYISNTPSPQSVYFQTLICNSQQFSRTVINHNLQYSALG--VRNEPRHLNSTDLHHLIDSGAAFASPFLPDDPVLDLIDEKILGRVPGKPAPGGWCVGGN-GNDTCLEWGNAEVLRPGPGARRLERLFLDLLSNGTLGSDQCVL 400
TT++ + TT FSLLFI LS++S T SLS+ DP+LFP+ P++ + PSIAYLISGSKGD RV+R+L + YHPKNQYLLHLDL+A + +R+ LAL V+ VPIFKAA+NVNVIGKADF P G S++SATLHGAA+LLRL + WDWF+NL A DYPLVT DDLLHILSYLPKDLNFVNH+SYIGWR+SR+LKPI+VDPGLYLS+K + YA+QKR+LP ++RLFTG+ SR LIE CILG +NL R L+MY+SNTPS YF T+ICNS+QF+RTVINHNLQY A + PR LNS++ +I SGAAFA+ F DDPVLD ID+ +LGR PG+ PGGWC+GG GN TC WG+A++LRPG GA RLE+L + LLSNG S QC++
Sbjct: 22 TTLFIILTTSFFSLLFIFTLSSYSFNTSSLSTHGRPDPYLFPNRQPTFTKIPSDPTPPSIAYLISGSKGDLDRVLRLLYATYHPKNQYLLHLDLSAPQTDRDQLALSVQSVPIFKAAQNVNVIGKADFAYPKGSSTISATLHGAAILLRLPKKWDWFVNLGAADYPLVTPDDLLHILSYLPKDLNFVNHSSYIGWRESRQLKPIIVDPGLYLSEKSEMFYATQKRDLPNSFRLFTGTSFSFASRNLIEHCILGVDNLPRILMMYLSNTPSSLINYFPTVICNSRQFNRTVINHNLQYVAFEKPSKKVPRALNSSEFDAMIQSGAAFATQFKLDDPVLDRIDQDVLGRNPGEVVPGGWCLGGEPGNITCSAWGDADILRPGTGAARLEKLIVRLLSNGEFHSRQCIV 427
BLAST of XM_017364869.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: D7TS64 ((Uncharacterized protein {ECO:0000313|EMBL:CBI33336.3}))
HSP 1 Score: 504.212 bits (1297), Expect = 5.229e-176
Identity = 251/431 (58.24%), Postives = 321/431 (74.48%), Query Frame = 0
Match: D7TS64 ((Uncharacterized protein {ECO:0000313|EMBL:CBI33336.3}))
HSP 1 Score: 504.212 bits (1297), Expect = 5.229e-176
Identity = 251/431 (58.24%), Postives = 321/431 (74.48%), Query Frame = 0
Query: 1 MQTQTQPP--------------NTTIYYLSTTIIFSLLFILYLSTFSP-TPSL-SSDPFLFP--HH---------PTNSST--PSIAYLISGSKGDSGRVIRVLLSAYHPKNQYLLHLDLTASKAERENLALEVEQVPIFKAAKNVNVIGKADFRDPYGCSSVSATLHGAAMLLRLSENWDWFINLDAHDYPLVTQDDLLHILSYLPKDLNFVNHTSYIGWRDSRRLKPIVVDPGLYLSQKHAISYASQKRELPGAYRLFTGSGSVILSRKLIEFCILGTENLARTLLMYISNTPSPQSVYFQTLICNSQQFSRTVINHNLQYSALG--VRNEPRHLNSTDLHHLIDSGAAFASPFLPDDPVLDLIDEKILGRVPGKPAPGGWCVGGNGNDTCLEWGNAEVLRPGPGARRLERLFLDLLSNGTLGSDQCVL 400
MQ QPP N + Y + T SLLFIL LS SP PS ++DP+LFP HH P++S+ PS+AY ISGS GDS +++R+L +AYHP+N YLLHLDLTA +++R+ LAL V+ VP+F+AA+NVNV+GKADF G SS+S+TLHGA++LLRLS +WDWFINL A DYPLVTQDDLLHILS++P+DLNFVNHTSYIGWR+SR+LKPI+VDPGLYL+QK I YA+QKR LP +++LFTGS S IL+R IEFCI+GT+NL RTLLMY++NTPS YF T++CNS+QF++T++NHNLQY++ + EPR L S D +I SGAAFA+ F +D LD ID++ILGR PGK PGGWC+G GNDTC WG+A+VLRPGPGA+RLE+ +LLS+GT + QC++
Sbjct: 1 MQNSHQPPFPISGTTAAALTKDNRSFYLIIATSFVSLLFILSLSATSPPAPSAPATDPYLFPTSHHRHPIFLNPNPSDSTPTPPSLAYFISGSAGDSHKILRLLFAAYHPRNHYLLHLDLTAPQSDRDRLALAVQSVPVFRAARNVNVMGKADFAYGKGSSSISSTLHGASILLRLSSSWDWFINLSASDYPLVTQDDLLHILSFVPRDLNFVNHTSYIGWRESRKLKPIIVDPGLYLTQKTEIFYATQKRGLPNSFQLFTGSSSAILNRAFIEFCIVGTDNLPRTLLMYLANTPSSLPNYFPTILCNSRQFNKTIVNHNLQYASFDKPAKEEPRRLGSKDFDDMIQSGAAFATQFRLNDVALDRIDQEILGRSPGKILPGGWCLGEAGNDTCSVWGDADVLRPGPGAKRLEKRIAELLSDGTFQAHQCIV 431
BLAST of XM_017364869.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A314KLK4 ((Beta-glucuronosyltransferase glcat14a {ECO:0000313|EMBL:OIT30235.1}))
HSP 1 Score: 503.056 bits (1294), Expect = 1.166e-175
Identity = 236/361 (65.37%), Postives = 290/361 (80.33%), Query Frame = 0
Match: A0A314KLK4 ((Beta-glucuronosyltransferase glcat14a {ECO:0000313|EMBL:OIT30235.1}))
HSP 1 Score: 503.056 bits (1294), Expect = 1.166e-175
Identity = 236/361 (65.37%), Postives = 290/361 (80.33%), Query Frame = 0
Query: 44 LFPHHPTNSST-----PSIAYLISGSKGDSGRVIRVLLSAYHPKNQYLLHLDLTASKAERENLALEVEQVPIFKAAKNVNVIGKADFRDPYGCSSVSATLHGAAMLLRLSENWDWFINLDAHDYPLVTQDDLLHILSYLPKDLNFVNHTSYIGWRDSRRLKPIVVDPGLYLSQKHAISYASQKRELPGAYRLFTGSGSVILSRKLIEFCILGTENLARTLLMYISNTPSPQSVYFQTLICNSQQFSRTVINHNLQYSALGVRNEPRHLNSTDLHHLIDSGAAFASPFLPDDPVLDLIDEKILGRVPGKPAPGGWCVGGNGNDTCLEWGNAEVLRPGPGARRLERLFLDLLSNGTLGSDQCV 399
LF H+P + +T PSIAYLISGS DS R+IR+L S YHP+NQYLLHLD AS++ER+NLAL ++ VP+FKAA+NVN IGKADF P G S++SATLHGA++LLR+S WDW INL A DYPLVTQDDLLHILSYLPKDLNFVNHTSYIGWR+SR+LKPIVVDPGLYL ++ + YA+QKRELP AY+LF+GS S ILSRK IEFCILGT+NL RTLLMY+SN+PS SVYF T++CNS++F+RT INHN+QY++ R E R LNS+D + L+ SGAAFA+PF +DP+LD ID ++L +P PGGWC+G N D C WG+AEVLRPGPGA+RLE+ F++L +NGT S +C
Sbjct: 67 LFHHNPNDQNTLLPTPPSIAYLISGSTKDSSRIIRLLFSIYHPRNQYLLHLDKKASQSERDNLALYIQSVPLFKAAQNVNFIGKADFVYPIGSSALSATLHGASVLLRVSHRWDWLINLSAADYPLVTQDDLLHILSYLPKDLNFVNHTSYIGWRESRKLKPIVVDPGLYLEEEDEVFYATQKRELPDAYQLFSGSSSAILSRKFIEFCILGTDNLPRTLLMYLSNSPSSASVYFPTILCNSRKFNRTTINHNMQYASFNSRQEARKLNSSDFNDLVMSGAAFATPFKANDPILDQIDRELLHHKYDEPVPGGWCLGDNETDKCTLWGDAEVLRPGPGAKRLEKHFVELFTNGTFRSSRCA 427
BLAST of XM_017364869.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7UQP2 ((xylosyltransferase 1 {ECO:0000313|RefSeq:XP_009758427.1}))
HSP 1 Score: 499.204 bits (1284), Expect = 2.506e-175
Identity = 230/344 (66.86%), Postives = 286/344 (83.14%), Query Frame = 0
Match: A0A1U7UQP2 ((xylosyltransferase 1 {ECO:0000313|RefSeq:XP_009758427.1}))
HSP 1 Score: 499.204 bits (1284), Expect = 2.506e-175
Identity = 230/344 (66.86%), Postives = 286/344 (83.14%), Query Frame = 0
Query: 55 PSIAYLISGSKGDSGRVIRVLLSAYHPKNQYLLHLDLTASKAERENLALEVEQVPIFKAAKNVNVIGKADFRDPYGCSSVSATLHGAAMLLRLSENWDWFINLDAHDYPLVTQDDLLHILSYLPKDLNFVNHTSYIGWRDSRRLKPIVVDPGLYLSQKHAISYASQKRELPGAYRLFTGSGSVILSRKLIEFCILGTENLARTLLMYISNTPSPQSVYFQTLICNSQQFSRTVINHNLQYSALGVRNEPRHLNSTDLHHLIDSGAAFASPFLPDDPVLDLIDEKILGRVPGKPAPGGWCVGGNGNDTCLEWGNAEVLRPGPGARRLERLFLDLLSNGTLGSDQC 398
PSIAYLISGS DS R++R+L S YHPKNQYL+HLD SK+E NLAL V+ VP+FKAA+NVNVIGKADFR G S+++ATLHGA++LL+LS++WDWFINL A DYPLVTQDDLLHILSYLPKDLNFVNH+SYIGWR+S++LKPIVVDPGLYL+++ + YA+QKRELP AYRLFTGS S IL+RK IE+CILG+ENL RTLLMY+SN+PS +SVYF T++CNS++F+RT INHN+ Y++ R++ R LNS+D + L+ SGAAFASPF DDPVLD ID ++L +P PGGWC+G + + C WG+AE+LRPGPGA+RLE+ FL+L SNG+ SDQC
Sbjct: 3 PSIAYLISGSTKDSSRILRLLFSIYHPKNQYLIHLDKKTSKSELNNLALSVQSVPVFKAAQNVNVIGKADFRYKIGSSALAATLHGASILLKLSKSWDWFINLSAADYPLVTQDDLLHILSYLPKDLNFVNHSSYIGWRESKKLKPIVVDPGLYLAEESEVYYATQKRELPDAYRLFTGSSSAILTRKFIEYCILGSENLPRTLLMYLSNSPSSESVYFPTILCNSRKFNRTAINHNMLYASFNSRSQARRLNSSDFNDLLTSGAAFASPFKVDDPVLDQIDHELLHHNRDEPVPGGWCLGDSETNKCSVWGDAEILRPGPGAKRLEKHFLELFSNGSYLSDQC 346
BLAST of XM_017364869.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S3XW42 ((beta-glucuronosyltransferase GlcAT14A-like {ECO:0000313|RefSeq:XP_016444158.1}))
HSP 1 Score: 498.819 bits (1283), Expect = 6.588e-175
Identity = 231/345 (66.96%), Postives = 284/345 (82.32%), Query Frame = 0
Match: A0A1S3XW42 ((beta-glucuronosyltransferase GlcAT14A-like {ECO:0000313|RefSeq:XP_016444158.1}))
HSP 1 Score: 498.819 bits (1283), Expect = 6.588e-175
Identity = 231/345 (66.96%), Postives = 284/345 (82.32%), Query Frame = 0
Query: 55 PSIAYLISGSKGDSGRVIRVLLSAYHPKNQYLLHLDLTASKAERENLALEVEQVPIFKAAKNVNVIGKADFRDPYGCSSVSATLHGAAMLLRLSENWDWFINLDAHDYPLVTQDDLLHILSYLPKDLNFVNHTSYIGWRDSRRLKPIVVDPGLYLSQKHAISYASQKRELPGAYRLFTGSGSVILSRKLIEFCILGTENLARTLLMYISNTPSPQSVYFQTLICNSQQFSRTVINHNLQYSALGVRNEPRHLNSTDLHHLIDSGAAFASPFLPDDPVLDLIDEKILGRVPGKPAPGGWCVGGNGNDTCLEWGNAEVLRPGPGARRLERLFLDLLSNGTLGSDQCV 399
PSIAYLISGS DS R+IR+L S YHP+NQYLLHLD AS++ER+NLAL ++ VP+FKAA+NVN IGKADF P G S++SATLHGA++LLR+S +WDWFINL A DYPLVTQDDLLHILSYLPKDLNFVNHTSYIGWR+SR+LKPIVVDPGLYL ++ + +ASQKRELP AY+LF+GS S ILSRK IEFCILGT+NL RTLLMY+SN+PS SVYF T++CNS++F++T INHN+QY++ R E R LNS+D + L+ SGAAFA+PF +DP+LD ID ++L +P PGGWC+G N D C WG+AEVLRPG GA+RLE+ F++L +NGT S +CV
Sbjct: 19 PSIAYLISGSTKDSSRIIRLLFSIYHPRNQYLLHLDKKASQSERDNLALYIQSVPLFKAAQNVNFIGKADFVYPIGSSALSATLHGASILLRVSTHWDWFINLSAADYPLVTQDDLLHILSYLPKDLNFVNHTSYIGWRESRKLKPIVVDPGLYLEEEDEVFFASQKRELPDAYQLFSGSSSAILSRKFIEFCILGTDNLPRTLLMYLSNSPSSASVYFPTILCNSRKFNKTTINHNMQYASFNSRQETRKLNSSDFNDLVMSGAAFATPFEANDPILDQIDRELLHHKYDEPVPGGWCLGDNETDKCTLWGDAEVLRPGRGAKRLEKHFVELFTNGTFRSSRCV 363
| Match Name | Stats | Description |
|---|---|---|
| A0A5J5C3H8 | E-Value: 0.000e+0, PID: 63.62 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8548... [more] |
| A0A5B7C349 | E-Value: 0.000e+0, PID: 70.14 | (Putative xylosyltransferase 1 {ECO:0000313|EMBL:M... [more] |
| A0A4U5NBI5 | E-Value: 2.394e-178, PID: 62.81 | (Glycosyltransferase family 14 family protein {ECO... [more] |
| A0A4S4DE55 | E-Value: 1.418e-177, PID: 68.90 | (Uncharacterized protein {ECO:0000313|EMBL:THG0095... [more] |
| A0A7J7GQX2 | E-Value: 1.507e-177, PID: 68.90 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5941... [more] |
| B9GMI2 | E-Value: 1.351e-176, PID: 62.56 | (Uncharacterized protein {ECO:0000313|EMBL:PNT5283... [more] |
| D7TS64 | E-Value: 5.229e-176, PID: 58.24 | (Uncharacterized protein {ECO:0000313|EMBL:CBI3333... [more] |
| A0A314KLK4 | E-Value: 1.166e-175, PID: 65.37 | (Beta-glucuronosyltransferase glcat14a {ECO:000031... [more] |
| A0A1U7UQP2 | E-Value: 2.506e-175, PID: 66.86 | (xylosyltransferase 1 {ECO:0000313|RefSeq:XP_00975... [more] |
| A0A1S3XW42 | E-Value: 6.588e-175, PID: 66.96 | (beta-glucuronosyltransferase GlcAT14A-like {ECO:0... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |