Resource Type:
Polypeptide
Name:
XM_017364714.1
Identifier:
XM_017364714.1-protein
Sequence:
MNPVQFRPPETPMELMEFLSRSWSTSSVQVSKTLKANAVTDDAVKPSGTI
LENISGADDEEATVSGNPFSFASSETSQLMERIMSEVSPRTSGRLSHSSG
PLNSSVTDTPPISPSHDLKYFRANNPVNTQYRSINAGGGAPSVGGKTVGR
WLKDRREKKKEEARAHNAKIHAAVSVAGVAAAVAAIASATAASSGTGKDE
EMAKTDMAVASAATLVAAQCVEAAEAMGAERDHLATIVGSAVSVRSAGDI
MTLTAVAATALRGVATLKARALKDVWNVAAVIPVEKGTNIGGNHGSNGIC
SGELVSEGNFVDICSRELLARGCELLKRTRKGDLHWKKVSVYINKMGQVI
LKMKSTHIAGTITKKKKNIVLEVLKDMPAWPGRHLLEGGEDRRYFALKTV
SRGVVEFECSNQKEHNIWTQGVSSLLVLAAEKNNKHRL
Sequence Length:
438
Sequence Checksum:
0ae11d41beed2ac68c590da2a9f4f30e
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017364714.1, derives from mRNA, XM_017364714.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017364714.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017364714.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9HJS7 ((Uncharacterized protein {ECO:0000313|EMBL:PIN17777.1}))
HSP 1 Score: 595.119 bits (1533), Expect = 0.000e+0
Identity = 330/457 (72.21%), Postives = 376/457 (82.28%), Query Frame = 0
Match: A0A2G9HJS7 ((Uncharacterized protein {ECO:0000313|EMBL:PIN17777.1}))
HSP 1 Score: 595.119 bits (1533), Expect = 0.000e+0
Identity = 330/457 (72.21%), Postives = 376/457 (82.28%), Query Frame = 0
Query: 1 MNPVQFRPPETPMELMEFLSRSWSTSSVQVSKTL---KANAVTDDAVKPSGTILENISGADDEEAT--VSGNPFSFASSETSQL-MERIMS---EVSPRTSGRLSHSSGPLNS-----SVTDTPPISPSH--DLKYFRANNPVNTQYRSINAGGGAPSVGGKTVGRWLKDRREKKKEEARAHNAKIHAAVSVAGVAAAVAAIASATAASSGTGKDEEMAKTDMAVASAATLVAAQCVEAAEAMGAERDHLATIVGSAVSVRSAGDIMTLTAVAATALRGVATLKARALKDVWNVAAVIPVEKGTNI---GGNHGSNGICSGELVSEGNFVDICSRELLARGCELLKRTRKGDLHWKKVSVYINKMGQVILKMKSTHIAGTITKKKKNIVLEVLKDMPAWPGRHLLEGGEDRRYFALKTVSRGVVEFECSNQKEHNIWTQGVSSLLVLAAEKNNKHRL 438
+ P+ FRPPETP E MEFLSRSWS S++++SK + K N + TI ENIS +E A SGNPFSF SETSQL MERIMS EVSPRTSGRLSHSSGPLN S+TD+PP+SPS DLKYFR NNPV+ QY++ A + GGKTVGRWLKDRREKKKEEAR HNA++HAA+SVAGVA+AVAAIA+ATAASSG GKDE+MAKTDMAVASAATLVAAQCVEAAEAMGAER+HLA++V SAV+VRSAGDIMTLTA AAT+LRG ATLKAR LKDVWN+AAVIPV+KG I N SN SGEL+ E NF+ ICSRELLARGCELLK+TRKGDLHWK VSVYINKMGQV+LKMKS H+AGT+TKKKKN+VLEVL+D+PAWPGRHLLEG EDRRYFALKTV+RGVVEFEC NQ+E+++WTQGVS LL +AAEKNN+HR+
Sbjct: 6 LQPI-FRPPETPREPMEFLSRSWSLSALEISKAIAPHKNNPQNGAVSGVAETIHENISAELEETALAPFSGNPFSFCPSETSQLVMERIMSQSQEVSPRTSGRLSHSSGPLNGGQSCGSLTDSPPVSPSEMDDLKYFRMNNPVSNQYKNCGASSTTANGGGKTVGRWLKDRREKKKEEARTHNAQLHAAISVAGVASAVAAIAAATAASSGAGKDEQMAKTDMAVASAATLVAAQCVEAAEAMGAEREHLASVVSSAVNVRSAGDIMTLTASAATSLRGAATLKARTLKDVWNIAAVIPVDKGMGITNGASNGSSNSSFSGELIPEENFLGICSRELLARGCELLKKTRKGDLHWKIVSVYINKMGQVMLKMKSRHVAGTVTKKKKNVVLEVLRDIPAWPGRHLLEGSEDRRYFALKTVARGVVEFECRNQREYDVWTQGVSRLLAIAAEKNNRHRI 461
BLAST of XM_017364714.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A5L1 ((Uncharacterized protein {ECO:0000313|EMBL:MPA51989.1}))
HSP 1 Score: 590.882 bits (1522), Expect = 0.000e+0
Identity = 345/469 (73.56%), Postives = 384/469 (81.88%), Query Frame = 0
Match: A0A5B7A5L1 ((Uncharacterized protein {ECO:0000313|EMBL:MPA51989.1}))
HSP 1 Score: 590.882 bits (1522), Expect = 0.000e+0
Identity = 345/469 (73.56%), Postives = 384/469 (81.88%), Query Frame = 0
Query: 1 MNPVQ---FRPPETPMELMEFLSRSWSTSSVQVSKTLK---------ANAVTDDAVKPSGTILENISGADDEEATVSGNPFSFASSETSQL-MERIMS-----EVSPRTSGRLSHSSGPLNS-----SVTDTPPISPSH--DLKYFRANNPVNTQYRSINAGGGAPSVGGKTVGRWLKDRREKKKEEARAHNAKIHAAVSVAGVAAAVAAIASATAASSGTGKDEEMAKTDMAVASAATLVAAQCVEAAEAMGAERDHLATIVGSAVSVRSAGDIMTLTAVAATALRGVATLKARALKDVWNVAAVIPVEKGTNIG------GNHGSNGICSGELVSEGNFVDICSRELLARGCELLKRTRKGDLHWKKVSVYINKMGQVILKMKSTHIAGTITKKKKNIVLEVLKDMPAWPGRHLLEGGEDRRYFALKTVSRGVVEFECSNQKEHNIWTQGVSSLLVLAAEKNNKHRL 438
M+PVQ +RPPETP E MEFLSRSWS S+++VSK L + D GTI E+++G +E ATVSGNPFSFAS+ETSQL MERIMS EVSPRTSGRLSHSSGPLN S+TD+PP+SPS D+K+ R NNPVNTQYRS G A S GGKTVGRWLKDRREKKKEE RA NA++HA VSVAGVAAAVAAIA+ATAASSG+GKDE+MAKTDMAVASAATLVAAQCVEAAEAMGAER+HLA++V SAV+VRSAGDIMTLTA AATALRGVATLKARALK+VWN+AAVIPV+KGT G N SNG SGELV E NF+ ICSRELLARGCELLKRTRKGDLHWK VSVYIN+MGQV+LKMKS H+AGT TKKKKN+VL+VLKDMPAWPGRHLLEGGE RRYF LKTV RGVVEFEC NQ+E++IWTQGVS LL +AAEKNNKHR+
Sbjct: 1 MDPVQSAVYRPPETPREPMEFLSRSWSVSALEVSKALAPTQMLGKTFSGGFNDGTAAAGGTIPEDLAGELEEAATVSGNPFSFASTETSQLVMERIMSQSQDQEVSPRTSGRLSHSSGPLNGGQSCGSLTDSPPVSPSEIDDVKFCRLNNPVNTQYRSGATGTAASSGGGKTVGRWLKDRREKKKEETRAQNAQLHATVSVAGVAAAVAAIAAATAASSGSGKDEQMAKTDMAVASAATLVAAQCVEAAEAMGAEREHLASVVSSAVNVRSAGDIMTLTAAAATALRGVATLKARALKEVWNIAAVIPVDKGTGAGVGTNGGSNGSSNGSYSGELVPEENFLGICSRELLARGCELLKRTRKGDLHWKIVSVYINRMGQVMLKMKSRHVAGTFTKKKKNVVLQVLKDMPAWPGRHLLEGGEHRRYFGLKTVLRGVVEFECRNQREYDIWTQGVSRLLSIAAEKNNKHRI 469
BLAST of XM_017364714.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A5R6 ((Uncharacterized protein {ECO:0000313|EMBL:MPA51987.1}))
HSP 1 Score: 589.726 bits (1519), Expect = 0.000e+0
Identity = 344/469 (73.35%), Postives = 384/469 (81.88%), Query Frame = 0
Match: A0A5B7A5R6 ((Uncharacterized protein {ECO:0000313|EMBL:MPA51987.1}))
HSP 1 Score: 589.726 bits (1519), Expect = 0.000e+0
Identity = 344/469 (73.35%), Postives = 384/469 (81.88%), Query Frame = 0
Query: 1 MNPVQ---FRPPETPMELMEFLSRSWSTSSVQVSKTLK---------ANAVTDDAVKPSGTILENISGADDEEATVSGNPFSFASSETSQL-MERIMS-----EVSPRTSGRLSHSSGPLNS-----SVTDTPPISPSH--DLKYFRANNPVNTQYRSINAGGGAPSVGGKTVGRWLKDRREKKKEEARAHNAKIHAAVSVAGVAAAVAAIASATAASSGTGKDEEMAKTDMAVASAATLVAAQCVEAAEAMGAERDHLATIVGSAVSVRSAGDIMTLTAVAATALRGVATLKARALKDVWNVAAVIPVEKGTNIG------GNHGSNGICSGELVSEGNFVDICSRELLARGCELLKRTRKGDLHWKKVSVYINKMGQVILKMKSTHIAGTITKKKKNIVLEVLKDMPAWPGRHLLEGGEDRRYFALKTVSRGVVEFECSNQKEHNIWTQGVSSLLVLAAEKNNKHRL 438
M+PVQ +RPPETP E MEFLSRSWS S+++VSK L + D GTI E+++G +E ATVSGNPFSFAS+ETSQL MERIMS EVSPRTSGRLSHSSGPLN S+TD+PP+SPS D+K+ R NNPVNTQYRS G A S GGKTVGRWLKDRREKKKEE RA NA++HA VSVAGVAAAVAAIA+ATAASSG+GKDE+MAKTDMAVASAATLVAAQCVEAAEAMGAER+HLA++V SAV+VRSAGDIMTLTA AATALRGVATLKARALK+VWN+AAVIPV+KGT G N SNG SGELV E NF+ ICSRELLARGCELLKRTRKGDLHWK VSVYIN+MGQV+LKMKS H+AGT TKKKKN+VLEVLKDMPAWPGRHLLEGGE RRYF LKTV RGVVEFEC NQ+E+++WTQGVS LL +AAEKNN+HR+
Sbjct: 1 MDPVQSAVYRPPETPREPMEFLSRSWSVSALEVSKALAPTQMLGKTFSGGFNDGTAAAGGTIPEDLAGELEEAATVSGNPFSFASTETSQLVMERIMSQSQDQEVSPRTSGRLSHSSGPLNGGQSCGSLTDSPPVSPSEIDDVKFCRLNNPVNTQYRSGATGTAASSGGGKTVGRWLKDRREKKKEETRAQNAQLHATVSVAGVAAAVAAIAAATAASSGSGKDEQMAKTDMAVASAATLVAAQCVEAAEAMGAEREHLASVVSSAVNVRSAGDIMTLTAAAATALRGVATLKARALKEVWNIAAVIPVDKGTGAGVGTNGGSNGSSNGSYSGELVPEENFLGICSRELLARGCELLKRTRKGDLHWKIVSVYINRMGQVMLKMKSRHVAGTFTKKKKNVVLEVLKDMPAWPGRHLLEGGEHRRYFGLKTVLRGVVEFECKNQREYDMWTQGVSRLLSVAAEKNNRHRI 469
BLAST of XM_017364714.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P6QPH7 ((Putative pleckstrin-like, plant {ECO:0000313|EMBL:PRQ36090.1}))
HSP 1 Score: 584.719 bits (1506), Expect = 0.000e+0
Identity = 325/453 (71.74%), Postives = 374/453 (82.56%), Query Frame = 0
Match: A0A2P6QPH7 ((Putative pleckstrin-like, plant {ECO:0000313|EMBL:PRQ36090.1}))
HSP 1 Score: 584.719 bits (1506), Expect = 0.000e+0
Identity = 325/453 (71.74%), Postives = 374/453 (82.56%), Query Frame = 0
Query: 6 FRPPETPMELMEFLSRSWSTSSVQVSKTL--------KANAVTDDAVKPSGTILENISGADDEEATVSGNPFSFASSETSQL-MERIMS---EVSPRTSGRLSHSSGPLNSSVTDTPPISPSH--DLKYFRA-NNPVNTQYRSINAGGGAPSVGGKTVGRWLKDRREKKKEEARAHNAKIHAAVSVAGVAAAVAAIASATAASSGTGKDEEMAKTDMAVASAATLVAAQCVEAAEAMGAERDHLATIVGSAVSVRSAGDIMTLTAVAATALRGVATLKARALKDVWNVAAVIPVEKGTNIG----GNHGSNGICSGELVSEGNFVDICSRELLARGCELLKRTRKGDLHWKKVSVYINKMGQVILKMKSTHIAGTITKKKKNIVLEVLKDMPAWPGRHLLEGGEDRRYFALKTVSRGVVEFECSNQKEHNIWTQGVSSLLVLAAEK-NNKHRL 438
FRPPETP E MEFLSRSWS S+++VSK L K N +D P E+++G ++ A VSGNPFSFASSETSQL MERIMS EVSPRTSGRLSHSSGPLN S+TD+PP+SPS D+KY R+ N+ +N QYR+ GG + GGKTVGRWLKDRREKKKEEARAHNA++HAAVSVAGVA+A+AAIA+ATAA+SG+GKDE+MAKTDMAVASAATLVAAQCVEAAEAMGAER+HL ++V SAV+VRSAGDIMTLTA AATALRG ATLKARALK+VWN+AAVIPVEKG + N SN SGELV E NF+ IC+RELLA+GCELLKRTRKGDLHWK VSVYIN+ QV+LKMKS H+AGTITKKKKN+VLEV+ DMPAWPGRHLLEGGE RRYF LKTV RGVVEFEC +Q+E++IWTQGVS L+ +AAEK NN+HR+
Sbjct: 15 FRPPETPREPMEFLSRSWSVSALEVSKALAPPQGQLSKLNLNSDATAIP-----EDLAGELEDAAAVSGNPFSFASSETSQLVMERIMSQSQEVSPRTSGRLSHSSGPLNGSLTDSPPVSPSENDDVKYCRSSNHHLNNQYRAATNGGVTVAAGGKTVGRWLKDRREKKKEEARAHNAQLHAAVSVAGVASAIAAIAAATAATSGSGKDEQMAKTDMAVASAATLVAAQCVEAAEAMGAEREHLHSVVSSAVNVRSAGDIMTLTAGAATALRGAATLKARALKEVWNIAAVIPVEKGNAVAGNGGSNGNSNSSFSGELVPEENFLGICNRELLAKGCELLKRTRKGDLHWKIVSVYINRSSQVMLKMKSRHVAGTITKKKKNVVLEVITDMPAWPGRHLLEGGEHRRYFGLKTVLRGVVEFECRSQREYDIWTQGVSRLISIAAEKRNNRHRV 462
BLAST of XM_017364714.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A8F6 ((Uncharacterized protein {ECO:0000313|EMBL:MPA51986.1}))
HSP 1 Score: 577.4 bits (1487), Expect = 0.000e+0
Identity = 348/461 (75.49%), Postives = 385/461 (83.51%), Query Frame = 0
Match: A0A5B7A8F6 ((Uncharacterized protein {ECO:0000313|EMBL:MPA51986.1}))
HSP 1 Score: 577.4 bits (1487), Expect = 0.000e+0
Identity = 348/461 (75.49%), Postives = 385/461 (83.51%), Query Frame = 0
Query: 1 MNPVQ---FRPPETPMELMEFLSRSWSTSSVQVSKTLKANAVTDDAV------KPSGTILENISGADDEEATVSGNPFSFASSETSQL-MERIMS---EVSPRTSGRLSHSSGPLNS-SVTDTPPISPSH--DLKYFRANNPVNTQYRSINAGGGAPSVGG-KTVGRWLKDRREKKKEEARAHNAKIHAAVSVAGVAAAVAAIASATAASSGTGKDEEMAKTDMAVASAATLVAAQCVEAAEAMGAERDHLATIVGSAVSVRSAGDIMTLTAVAATALRGVATLKARALKDVWNVAAVIPVEKGTNIG------GNHGSNGICSGELVSEGNFVDICSRELLARGCELLKRTRKGDLHWKKVSVYINKMGQVILKMKSTHIAGTITKKKKNIVLEVLKDMPAWPGRHLLEGGEDRRYFALKTVSRGVVEFECSNQKEHNIWTQGVSSLLVLAAEKNNKHRL 438
M+PVQ FRPPETP E MEFLSRSWS S+++VSK L + GTILE+++G +E ATVSGNPFSFASSETSQL MERIMS EVSPRTSGRLSHSSGPLN S+TD+PP+SPS D+K R NNPVNTQYRS GGGA + GG KTVGRWLKDRREKKKEE RA NA++HA VSVAGVAAAVAAIA+ATAASSG+GKDE+MAKTDMAVASAATLVAAQCVEAAEAMGAER+HLA++V SAV+VRSAGDIMTLTA AATALRGVATLKARALK+VWN+AAVIPV+KGT G N SNG SGELV E NF+ ICSRELLARGCELLKRTRKGDLHWK VSVYIN+MGQV+LKMKS H+AGT TKKKKN+VL+VLKDMPAWPGRHLLEGGE RRYF LKTV RGVVEFEC NQ+E++IWTQGVS LL +AAEKNNKHR+
Sbjct: 1 MDPVQQSMFRPPETPKEPMEFLSRSWSVSALEVSKALAPTQMLAKTFSGGGVGFNGGTILEDVAGELEEAATVSGNPFSFASSETSQLVMERIMSQSQEVSPRTSGRLSHSSGPLNGGSLTDSPPVSPSEMDDVKVCRLNNPVNTQYRSGATGGGAAASGGGKTVGRWLKDRREKKKEETRAQNAQLHATVSVAGVAAAVAAIAAATAASSGSGKDEQMAKTDMAVASAATLVAAQCVEAAEAMGAEREHLASVVSSAVNVRSAGDIMTLTAAAATALRGVATLKARALKEVWNIAAVIPVDKGTGAGVGTNGGSNGSSNGSYSGELVPEENFLGICSRELLARGCELLKRTRKGDLHWKIVSVYINRMGQVMLKMKSRHVAGTFTKKKKNVVLQVLKDMPAWPGRHLLEGGEHRRYFGLKTVLRGVVEFECRNQREYDIWTQGVSRLLSIAAEKNNKHRI 461
BLAST of XM_017364714.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A540MJZ5 ((Uncharacterized protein {ECO:0000313|EMBL:TQD99108.1}))
HSP 1 Score: 575.089 bits (1481), Expect = 0.000e+0
Identity = 330/470 (70.21%), Postives = 375/470 (79.79%), Query Frame = 0
Match: A0A540MJZ5 ((Uncharacterized protein {ECO:0000313|EMBL:TQD99108.1}))
HSP 1 Score: 575.089 bits (1481), Expect = 0.000e+0
Identity = 330/470 (70.21%), Postives = 375/470 (79.79%), Query Frame = 0
Query: 1 MNPVQ---FRPPETPMELMEFLSRSWSTSSVQVSKTLK--------ANAVTDDAVKPSG--TILENISGADDEEATVSGNPFSFASSETSQL-MERIMS---EVSPRTSGRLSHSSGPLNSSVTDTPPISPSH--DLKYFRANNPVNTQYRSINAGGGAPSVGGKTVGRWLKDRREKKKEEARAHNAKIHAAVSVAGVAAAVAAIASATAASSGTGKDEEMAKTDMAVASAATLVAAQCVEAAEAMGAERDHLATIVGSAVSVRSAGDIMTLTAVA----------ATALRGVATLKARALKDVWNVAAVIPVEKGTNIGGNHGSNGICSG---ELVSEGNFVDICSRELLARGCELLKRTRKGDLHWKKVSVYINKMGQVILKMKSTHIAGTITKKKKNIVLEVLKDMPAWPGRHLLEGGEDRRYFALKTVSRGVVEFECSNQKEHNIWTQGVSSLLVLAAEKNNKHRL 438
M+PVQ F PPETP E MEFLSRSWS S+++VSK L N AV G ILE+++G DE AT SGNPFSFASSETSQL MERIMS EVSPRTSGRLSHSSGPLN S+TD+PP+SPS D+KY R+NN NTQ+R+ G S GGKTVGRWLKDRREKKKEEARA NA++HAAVSVAGVA+A+AAIA+ATAASSG+GKDE MAKTDMAVASAATLVAAQCVEAAEAMGAER+HLAT+V SAV+VRSAGDIMTLTA A +ALRG ATLKARALK+VWN+AAVIPVEKG+ + GN + S ELV E NF+ ICSRELLA+GCELLKRTR GDLHWK VSVYI++ GQV+LKMKS H+AGTITKKKKN+VLEV+KDMPAWPGRHLLEGGE RRYF LKTV RGVVEFEC NQ+E++IWT GVS LL + AE++N+HR+
Sbjct: 1 MDPVQAAVFLPPETPREPMEFLSRSWSVSALEVSKALAPPPGQTQLTNLNLSSAVNGGGGGPILEDLAGEIDESATFSGNPFSFASSETSQLVMERIMSQSQEVSPRTSGRLSHSSGPLNGSLTDSPPVSPSEIDDVKYGRSNNHHNTQFRAATPSGAPVSGGGKTVGRWLKDRREKKKEEARALNAQLHAAVSVAGVASAIAAIAAATAASSGSGKDEHMAKTDMAVASAATLVAAQCVEAAEAMGAEREHLATVVSSAVNVRSAGDIMTLTAAAATGTEPEFGPVSALRGAATLKARALKEVWNIAAVIPVEKGSGVAGNGSNGNSNSSFSGELVPEENFLGICSRELLAKGCELLKRTRGGDLHWKIVSVYIHRTGQVMLKMKSRHVAGTITKKKKNVVLEVIKDMPAWPGRHLLEGGEHRRYFGLKTVMRGVVEFECRNQREYDIWTLGVSRLLSIVAERHNRHRI 470
BLAST of XM_017364714.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1Q3APS8 ((Auxin_canalis domain-containing protein/PH_2 domain-containing protein {ECO:0000313|EMBL:GAV57563.1}))
HSP 1 Score: 575.089 bits (1481), Expect = 0.000e+0
Identity = 323/452 (71.46%), Postives = 372/452 (82.30%), Query Frame = 0
Match: A0A1Q3APS8 ((Auxin_canalis domain-containing protein/PH_2 domain-containing protein {ECO:0000313|EMBL:GAV57563.1}))
HSP 1 Score: 575.089 bits (1481), Expect = 0.000e+0
Identity = 323/452 (71.46%), Postives = 372/452 (82.30%), Query Frame = 0
Query: 2 NPVQFRPPETPMELMEFLSRSWSTSSVQVSKTL---KANAVTDDAVKPSGTILENISGADDEEATVSGNPFSFASSETSQL-MERIMS---EVSPRTSGRLSHSSGPLNSSVTDTPPISPSH--DLKYFRANNPVNTQYRSINAGGGAPSV--GGKTVGRWLKDRREKKKEEARAHNAKIHAAVSVAGVAAAVAAIASATAASSGTGKDEEMAKTDMAVASAATLVAAQCVEAAEAMGAERDHLATIVGSAVSVRSAGDIMTLTAVAATALRGVATLKARALKDVWNVAAVIPVEKGTNI----GGNHGSNGICSGELVSEGNFVDICSRELLARGCELLKRTRKGDLHWKKVSVYINKMGQVILKMKSTHIAGTITKKKKNIVLEVLKDMPAWPGRHLLEGGEDRRYFALKTVSRGVVEFECSNQKEHNIWTQGVSSLLVLAAEKNNKHRL 438
+PVQFRPPETP E MEFLSRSWS S+++VSK L + A+ I E+I+G +E AT SGNPFSFASSETSQ+ M+RIMS E+SPRTSGRLSHSSGPLN S+TD+PP+SPS D+K+ R+NN N Q+R+ G A + GGKTVGRWLKDRREKKKEE RA NA++HAA++VAGVAAAVAAIA+ATAASS +GKDE+MAKTDMAVASAATLVAAQCVEAAEAMGAER+HLA++V SAV+VRSAGDIMTLTA AATALRG ATLKARALK+VWN+AAVIPVEKG + G N SNG SGE V E NF+ ICS+ELLARGCELLKRTRKGDLHWK VSVYIN+M QV+LKMKS H+AGTITKKKKN+VLEV+ +MPAWPGRHLLEGGE RRYF LKTV RGVVEFEC NQ+E+++ TQGVS LL +A EK + HRL
Sbjct: 13 DPVQFRPPETPREPMEFLSRSWSVSALEVSKALAPPHPQMLLSKAMSGGCVIQEDIAGEAEENATFSGNPFSFASSETSQMVMDRIMSQSQEISPRTSGRLSHSSGPLNGSLTDSPPVSPSDIDDVKFCRSNNHHNVQFRTTTQTGIAATASGGGKTVGRWLKDRREKKKEETRAQNAQLHAAITVAGVAAAVAAIAAATAASSTSGKDEQMAKTDMAVASAATLVAAQCVEAAEAMGAEREHLASVVSSAVNVRSAGDIMTLTAGAATALRGAATLKARALKEVWNIAAVIPVEKGMGVVGGTGSNGSSNGSFSGEFVPEENFLGICSKELLARGCELLKRTRKGDLHWKVVSVYINRMNQVMLKMKSRHVAGTITKKKKNVVLEVITNMPAWPGRHLLEGGEHRRYFGLKTVLRGVVEFECRNQREYDVLTQGVSRLLTIAKEKRSGHRL 464
BLAST of XM_017364714.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A3BET3 ((Uncharacterized protein {ECO:0000313|EMBL:KAE8714607.1}))
HSP 1 Score: 570.852 bits (1470), Expect = 0.000e+0
Identity = 323/459 (70.37%), Postives = 367/459 (79.96%), Query Frame = 0
Match: A0A6A3BET3 ((Uncharacterized protein {ECO:0000313|EMBL:KAE8714607.1}))
HSP 1 Score: 570.852 bits (1470), Expect = 0.000e+0
Identity = 323/459 (70.37%), Postives = 367/459 (79.96%), Query Frame = 0
Query: 3 PVQFRPPETPMELMEFLSRSWSTSSVQVSKTLKANAVTDDAV-----KPSGTIL--ENISGAD--DEEATVSGNPFSFASSETSQL-MERIMS---EVSPRTSGRLSHSSGPLNSSVTDTPPISPSH--DLKYF-RANNPVNTQYRSINAGG-GAPSV--GGKTVGRWLKDRREKKKEEARAHNAKIHAAVSVAGVAAAVAAIASATAASSGTGKDEEMAKTDMAVASAATLVAAQCVEAAEAMGAERDHLATIVGSAVSVRSAGDIMTLTAVAATALRGVATLKARALKDVWNVAAVIPVEK---GTNIGGNHGS-NGICSGELVSEGNFVDICSRELLARGCELLKRTRKGDLHWKKVSVYINKMGQVILKMKSTHIAGTITKKKKNIVLEVLKDMPAWPGRHLLEGGEDRRYFALKTVSRGVVEFECSNQKEHNIWTQGVSSLLVLAAEKNNKHRL 438
P FRPPETP+E MEFLSRSWS S+++VS+ L + SG ++ E+ISG +E + VSGNPFSFASSETSQ+ +ERIMS EVSPRTSGRLSHSSGPL TD+PP+SPS D+K F ANN +N QYRS G P+V GGKTVGRWLKDRREKKKEE RAHNA++HAAVSVAGVAAAVA I +ATAA S KDE+ KTDMAVASAATLVAAQCVE AEAMGAERDHLA+++ SAV+VRSAGDIMTLTA AATALRG ATLKARALK+VWN+AAVIPVE G N G NHGS NG SGELV E NF+ ICSRELLARGCELLKRTR GDLHWK VSVYIN+M QV+LKMKS H+ GTITKKKKN+VLEV+KDMPAWPGRHLLEGGE+RRYF LKT RGVVEFEC +++E++IWTQGVS LL +AAEKNN++R+
Sbjct: 17 PAPFRPPETPLEPMEFLSRSWSVSALEVSRALAPPPLPSSHQMFSKGSSSGNVVIQEDISGEHQLEENSIVSGNPFSFASSETSQMILERIMSQSQEVSPRTSGRLSHSSGPL----TDSPPVSPSDIDDVKQFCHANNSLNIQYRSSTGMAVGTPAVTGGGKTVGRWLKDRREKKKEETRAHNAQLHAAVSVAGVAAAVATIVAATAAFSSARKDEQRVKTDMAVASAATLVAAQCVEVAEAMGAERDHLASVISSAVNVRSAGDIMTLTAGAATALRGAATLKARALKEVWNIAAVIPVENNKTGCN-GSNHGSSNGSFSGELVPEENFLGICSRELLARGCELLKRTRTGDLHWKIVSVYINRMNQVMLKMKSRHVGGTITKKKKNVVLEVIKDMPAWPGRHLLEGGENRRYFGLKTEMRGVVEFECKSRREYDIWTQGVSRLLSIAAEKNNRNRV 470
BLAST of XM_017364714.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J1AXI1 ((VAN3-binding protein-like isoform X1 {ECO:0000313|RefSeq:XP_021291591.1}))
HSP 1 Score: 569.311 bits (1466), Expect = 0.000e+0
Identity = 327/461 (70.93%), Postives = 379/461 (82.21%), Query Frame = 0
Match: A0A6J1AXI1 ((VAN3-binding protein-like isoform X1 {ECO:0000313|RefSeq:XP_021291591.1}))
HSP 1 Score: 569.311 bits (1466), Expect = 0.000e+0
Identity = 327/461 (70.93%), Postives = 379/461 (82.21%), Query Frame = 0
Query: 3 PVQFRPPETPMELMEFLSRSWSTSSVQVSKTL-----KANAVTDDAVKPSGT----ILENISGADDEEATVSGNPFSFASSETSQL-MERIMS----EVSPRTSGRLSHSSGPLNS--SVTDTPPISPSH--DLKYF-RANNPVNTQYRSINAGGGAPSV------GGKTVGRWLKDRREKKKEEARAHNAKIHAAVSVAGVAAAVAAIASATAASSGTGKDEEMAKTDMAVASAATLVAAQCVEAAEAMGAERDHLATIVGSAVSVRSAGDIMTLTAVAATALRGVATLKARALKDVWNVAAVIPVEKGTNIGGNHGSNGICSGELVSEGNFVDICSRELLARGCELLKRTRKGDLHWKKVSVYINKMGQVILKMKSTHIAGTITKKKKNIVLEVLKDMPAWPGRHLLEGGEDRRYFALKTVSRGVVEFECSNQKEHNIWTQGVSSLLVLAAEKNNKHRL 438
PV FRPPETP E MEFLSRSWS S+++VS+ L +A A ++K S + I E+++G ++ VSGNPFSFASSETSQ+ MERIMS EVSPRTSGRLSHSSGPL S+TD+PP+SPS D+K F RANN +N+Q+R+ + A GGKTVGRWLKDRREKKKEE RAHNA++HAA+SVAGVAAAVAAIA+ATAASS GKDE+MAKTDMAVASAATLVAAQCVEAAE MGAER+HLA+++ SAV+VRSAGDIMTLTA AATALRG ATLKARALK+VWN+AAVIPV+KG G N SNG SGELV E NF+ ICSRELLARGCELLKRTRKGDLHWK VSVYIN+M QV+LKMKS H+AGTITKKKKN+VLEV+KDMPAWPGRHLLEGGE+RRYF LKT+ RGVVEFEC NQ+E++IWTQGVS LL +AAEKN+++R+
Sbjct: 15 PVPFRPPETPREPMEFLSRSWSVSALEVSRALAPPSSQAAASHQVSLKGSSSGNVVIQEDVAGELEDSGIVSGNPFSFASSETSQMVMERIMSQSQQEVSPRTSGRLSHSSGPLTGGGSLTDSPPVSPSEIDDVKQFCRANNSLNSQFRTTASVAAATPATTAVTGGGKTVGRWLKDRREKKKEETRAHNAQLHAAISVAGVAAAVAAIAAATAASSSAGKDEQMAKTDMAVASAATLVAAQCVEAAEVMGAEREHLASVISSAVNVRSAGDIMTLTAGAATALRGAATLKARALKEVWNIAAVIPVDKGGGNGSNGSSNGSFSGELVPEENFLGICSRELLARGCELLKRTRKGDLHWKIVSVYINRMNQVMLKMKSRHVAGTITKKKKNVVLEVIKDMPAWPGRHLLEGGENRRYFGLKTIMRGVVEFECRNQREYDIWTQGVSRLLSIAAEKNSRNRI 475
BLAST of XM_017364714.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J1AWN4 ((VAN3-binding protein-like isoform X2 {ECO:0000313|RefSeq:XP_021291592.1}))
HSP 1 Score: 569.311 bits (1466), Expect = 0.000e+0
Identity = 327/460 (71.09%), Postives = 379/460 (82.39%), Query Frame = 0
Match: A0A6J1AWN4 ((VAN3-binding protein-like isoform X2 {ECO:0000313|RefSeq:XP_021291592.1}))
HSP 1 Score: 569.311 bits (1466), Expect = 0.000e+0
Identity = 327/460 (71.09%), Postives = 379/460 (82.39%), Query Frame = 0
Query: 3 PVQFRPPETPMELMEFLSRSWSTSSVQVSKTL-----KANAVTDDAVKPSGT----ILENISGADDEEATVSGNPFSFASSETSQL-MERIMS---EVSPRTSGRLSHSSGPLNS--SVTDTPPISPSH--DLKYF-RANNPVNTQYRSINAGGGAPSV------GGKTVGRWLKDRREKKKEEARAHNAKIHAAVSVAGVAAAVAAIASATAASSGTGKDEEMAKTDMAVASAATLVAAQCVEAAEAMGAERDHLATIVGSAVSVRSAGDIMTLTAVAATALRGVATLKARALKDVWNVAAVIPVEKGTNIGGNHGSNGICSGELVSEGNFVDICSRELLARGCELLKRTRKGDLHWKKVSVYINKMGQVILKMKSTHIAGTITKKKKNIVLEVLKDMPAWPGRHLLEGGEDRRYFALKTVSRGVVEFECSNQKEHNIWTQGVSSLLVLAAEKNNKHRL 438
PV FRPPETP E MEFLSRSWS S+++VS+ L +A A ++K S + I E+++G ++ VSGNPFSFASSETSQ+ MERIMS EVSPRTSGRLSHSSGPL S+TD+PP+SPS D+K F RANN +N+Q+R+ + A GGKTVGRWLKDRREKKKEE RAHNA++HAA+SVAGVAAAVAAIA+ATAASS GKDE+MAKTDMAVASAATLVAAQCVEAAE MGAER+HLA+++ SAV+VRSAGDIMTLTA AATALRG ATLKARALK+VWN+AAVIPV+KG G N SNG SGELV E NF+ ICSRELLARGCELLKRTRKGDLHWK VSVYIN+M QV+LKMKS H+AGTITKKKKN+VLEV+KDMPAWPGRHLLEGGE+RRYF LKT+ RGVVEFEC NQ+E++IWTQGVS LL +AAEKN+++R+
Sbjct: 15 PVPFRPPETPREPMEFLSRSWSVSALEVSRALAPPSSQAAASHQVSLKGSSSGNVVIQEDVAGELEDSGIVSGNPFSFASSETSQMVMERIMSQSQEVSPRTSGRLSHSSGPLTGGGSLTDSPPVSPSEIDDVKQFCRANNSLNSQFRTTASVAAATPATTAVTGGGKTVGRWLKDRREKKKEETRAHNAQLHAAISVAGVAAAVAAIAAATAASSSAGKDEQMAKTDMAVASAATLVAAQCVEAAEVMGAEREHLASVISSAVNVRSAGDIMTLTAGAATALRGAATLKARALKEVWNIAAVIPVDKGGGNGSNGSSNGSFSGELVPEENFLGICSRELLARGCELLKRTRKGDLHWKIVSVYINRMNQVMLKMKSRHVAGTITKKKKNVVLEVIKDMPAWPGRHLLEGGENRRYFGLKTIMRGVVEFECRNQREYDIWTQGVSRLLSIAAEKNSRNRI 474
| Match Name | Stats | Description |
|---|---|---|
| A0A2G9HJS7 | E-Value: 0.000e+0, PID: 72.21 | (Uncharacterized protein {ECO:0000313|EMBL:PIN1777... [more] |
| A0A5B7A5L1 | E-Value: 0.000e+0, PID: 73.56 | (Uncharacterized protein {ECO:0000313|EMBL:MPA5198... [more] |
| A0A5B7A5R6 | E-Value: 0.000e+0, PID: 73.35 | (Uncharacterized protein {ECO:0000313|EMBL:MPA5198... [more] |
| A0A2P6QPH7 | E-Value: 0.000e+0, PID: 71.74 | (Putative pleckstrin-like, plant {ECO:0000313|EMBL... [more] |
| A0A5B7A8F6 | E-Value: 0.000e+0, PID: 75.49 | (Uncharacterized protein {ECO:0000313|EMBL:MPA5198... [more] |
| A0A540MJZ5 | E-Value: 0.000e+0, PID: 70.21 | (Uncharacterized protein {ECO:0000313|EMBL:TQD9910... [more] |
| A0A1Q3APS8 | E-Value: 0.000e+0, PID: 71.46 | (Auxin_canalis domain-containing protein/PH_2 doma... [more] |
| A0A6A3BET3 | E-Value: 0.000e+0, PID: 70.37 | (Uncharacterized protein {ECO:0000313|EMBL:KAE8714... [more] |
| A0A6J1AXI1 | E-Value: 0.000e+0, PID: 70.93 | (VAN3-binding protein-like isoform X1 {ECO:0000313... [more] |
| A0A6J1AWN4 | E-Value: 0.000e+0, PID: 71.09 | (VAN3-binding protein-like isoform X2 {ECO:0000313... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |