XM_017367225.1

Resource Type: 
Polypeptide
Name: 
XM_017367225.1
Identifier: 
XM_017367225.1-protein
Sequence: 
MASIADPGEVTHPPQASFDDFQRQTSLMTSCTLLWKELSDHFTTLENDLK
MKSAAIKSKLDKLDSETSLSLKNLETRELSLVKSMSVAFETVEKRKAAAL
SLEEDSGDDVAAVDDSEGLLLRLRRFCTRMDSLGFWRFITTRKKELDSIR
AKIPAALSDCIDPARFVLEAISGVFPEDKRENKSERLNDLGWACVMVLES
LIPVVVDPILGDKRMLVTPKVKENAGKIAEEWKKSLEQRGGIENVKTPDV
HTFLQHLVTFGIVKNEDLDLYRKLVVGSAWRKQMPKLAVSLGLGDKMPDM
IEELISRGQQVDAVHFTYEVGLVDRFPPVPLLKAFLKDAKKAATTILEDP
NNSSRAALAARKEQSALRAVVKCIEEYKLEAEFPSESLKKRLEQLEKVKT
EKKRPAAVPANKRTRTNNGGPMPPAKAGRLTNAYVSSFPAPPTFVRSPSH
TQYPATGVPQYQVAPPMYGHGSRSPQASHYVYSPEAASPPLAASYPGVPM
SYPAYGGYGNGMTPVYQQAYYR
Sequence Length: 
522
Sequence Checksum: 
701e2cd80c1da6ce91a1a2ec12bc245d
View location in JBrowse: 
DCARv2_Chr8:25107297..25111268-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017367225.1, derives from mRNA, XM_017367225.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017367225.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017367225.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7CG20 (FRIGIDA-like protein {ECO:0000256|RuleBase:RU364012} (Fragment))

HSP 1 Score: 812.372 bits (2097), Expect = 0.000e+0
Identity = 401/525 (76.38%), Postives = 451/525 (85.90%), Query Frame = 0
 
Query:    1 MASIADPGEVTHPPQASFDDFQRQTSLMTSCTLLWKELSDHFTTLENDLKMKSAAIKSKLDKLDSETSLSLKNLETRELSLVKSMSVAFETVEKRKAAALSLEEDSG--DDVAAVDDSEGLLLRLRRFCTRMDSLGFWRFITTRKKELDSIRAKIPAALSDCIDPARFVLEAISGVFPEDKRENKSERLNDLGWACVMVLESLIPVVVDPILGDKRMLVTPKVKENAGKIAEEWKKSLEQRGGIENVKTPDVHTFLQHLVTFGIVKNEDLDLYRKLVVGSAWRKQMPKLAVSLGLGDKMPDMIEELISRGQQVDAVHFTYEVGLVDRFPPVPLLKAFLKDAKKAATTILEDPNNSSRAA-LAARKEQSALRAVVKCIEEYKLEAEFPSESLKKRLEQLEKVKTEKKRPAAVPANKRTRTNNGGPMPPAKAGRLTNAYVSSFPAPPTFVRSPSHTQYPATGVPQYQVAPPMYGHGSRSPQASHYVYSPEAASPPLAASYPGVPMSYPAYGGYGNGMTPVYQQAYYR 522
            M SIADPGE+    Q SFD+FQRQTSLMTSCTLLWKELSDHFT+LE DL+ KS A++ K+  LD++T  SL  L+ RE+++  S+S+A    E+RK AAL + E +   DD A VD+SEGL+L+LR +CT+MDS GFWRF+T RKKELDS+RA++PAAL+DC+DPARFVLEAIS VFP DKR  KSER+NDLGWACV+VLESLIPVVVDPILG  R+LVTP +K+ A +IAE WK SL++RGGIENVKTPDVHTFLQHLVTFGIVK ED+DLYRKLVVG AWRKQMPKLAVSLGLGDKMPDMIEELIS+GQQVDAVHFTYEVGLVD+FPPVPLLKAFLKDAKKAAT+ILEDPNNS R+A LAARKEQSALRAV+KCIEEYKLEAEFP E+LKKRLEQLEKVK EKK+PAAVPANKRTR +NGGPMPPAKAGRLTNAYVSSFPA PTFVRSPSHTQY A GVP Y  AP MY  GSRSP  + Y YSPE A+PP   SYPG P++YP YGGYGNGM P YQQAYYR
Sbjct:   91 MGSIADPGELDELTQPSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQDLQKKSEALRRKIRTLDTQTKESLHILKKREVTIDGSVSIALGKAEERKEAALIVLEANCEEDDEAEVDNSEGLVLKLRSYCTKMDSPGFWRFVTVRKKELDSMRAQMPAALADCVDPARFVLEAISEVFPVDKRVEKSERVNDLGWACVLVLESLIPVVVDPILGKSRLLVTPSMKKRAKEIAETWKTSLDERGGIENVKTPDVHTFLQHLVTFGIVKKEDVDLYRKLVVGLAWRKQMPKLAVSLGLGDKMPDMIEELISKGQQVDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAATSILEDPNNSGRSAYLAARKEQSALRAVIKCIEEYKLEAEFPPENLKKRLEQLEKVKIEKKKPAAVPANKRTRASNGGPMPPAKAGRLTNAYVSSFPAAPTFVRSPSHTQYTA-GVPPYPAAPAMY--GSRSPPTNPYAYSPE-ATPPALGSYPGAPVNYPVYGGYGNGMAPAYQQAYYR 611
[Close]
BLAST of XM_017367225.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2I4EFN6 (FRIGIDA-like protein {ECO:0000256|RuleBase:RU364012})

HSP 1 Score: 798.505 bits (2061), Expect = 0.000e+0
Identity = 391/525 (74.48%), Postives = 442/525 (84.19%), Query Frame = 0
 
Query:    1 MASIADPGEVTHPPQASFDDFQRQTSLMTSCTLLWKELSDHFTTLENDLKMKSAAIKSKLDKLDSETSLSLKNLETRELSLVKSMSVAFETVEKRKAAALSLEEDSGDD--VAAVDDSEGLLLRLRRFCTRMDSLGFWRFITTRKKELDSIRAKIPAALSDCIDPARFVLEAISGVFPEDKRENKSERLNDLGWACVMVLESLIPVVVDPILGDKRMLVTPKVKENAGKIAEEWKKSLEQRGGIENVKTPDVHTFLQHLVTFGIVKNEDLDLYRKLVVGSAWRKQMPKLAVSLGLGDKMPDMIEELISRGQQVDAVHFTYEVGLVDRFPPVPLLKAFLKDAKKAATTILEDPNNSSRAA-LAARKEQSALRAVVKCIEEYKLEAEFPSESLKKRLEQLEKVKTEKKRPAAVPANKRTRTNNGGPMPPAKAGRLTNAYVSSFPAPPTFVRSPSHTQYPATGVPQYQVAPPMYGHGSRSPQASHYVYSPEAASPPLAASYPGVPMSYPAYGGYGNGMTPVYQQAYYR 522
            M SI DPGE++     SFD+FQRQTSLMTSCTLLWKELSDHF++LE +L  KS AI++K+  LD ET  SL  LE RE+++  S+ +A E +E  K AA S+ + + DD     VD+ +G LL L+ FC +MD+LGFWRFIT +KKELD +RA++P AL++CIDP RFVLE+IS VFP DKR  KSER+NDLGWACV+VLESLIPVVVDP++G+ R+LVTP VKE A  IAE WK SLE+RGGIENVKTPDVHTFLQHLVTFGIVK ED+ LYRKLVVGSAWRKQMPKLAVSLGLGDKMPDMIEELISRGQQ+DAVHFTYEVGLVD+FPPVPLLKAFLKDAKKAA +ILEDP++  RA+ LA RKEQSALRAV+KCIEEYKLEAEFP E+LKKRLEQLEKVKTEK++PAAVPANKRTR NNGGPMPPAKAGRLTNAYVSSFPA PTFVRSPSH QYPA GVPQY   PPMY  GSRSP A+ Y YSPEAA PPLA SYP  PM+YPAY GYGNG+ P YQQAYYR
Sbjct:    1 MGSIPDPGELSELNPPSFDEFQRQTSLMTSCTLLWKELSDHFSSLEQNLLKKSEAIRNKILNLDHETKASLNELEKREVTIQGSVEIALEKLEASKEAAFSVLQRASDDDENGEVDNDDGFLLTLKSFCLKMDALGFWRFITGKKKELDMLRAQMPLALAECIDPPRFVLESISEVFPVDKRVEKSERVNDLGWACVLVLESLIPVVVDPVIGNSRLLVTPSVKERARDIAEAWKASLEERGGIENVKTPDVHTFLQHLVTFGIVKEEDVGLYRKLVVGSAWRKQMPKLAVSLGLGDKMPDMIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAAASILEDPSSPGRASQLAGRKEQSALRAVIKCIEEYKLEAEFPPENLKKRLEQLEKVKTEKRKPAAVPANKRTRANNGGPMPPAKAGRLTNAYVSSFPAAPTFVRSPSHGQYPA-GVPQYHSPPPMY--GSRSPPANPYAYSPEAAPPPLAGSYPVAPMNYPAYAGYGNGIPPAYQQAYYR 522
[Close]
BLAST of XM_017367225.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6RH05 (FRIGIDA-like protein {ECO:0000256|RuleBase:RU364012})

HSP 1 Score: 787.334 bits (2032), Expect = 0.000e+0
Identity = 385/525 (73.33%), Postives = 439/525 (83.62%), Query Frame = 0
 
Query:    1 MASIADPGEVTHPPQASFDDFQRQTSLMTSCTLLWKELSDHFTTLENDLKMKSAAIKSKLDKLDSETSLSLKNLETRELSLVKSMSVAFETVEKRKAAALS--LEEDSGDDVAAVDDSEGLLLRLRRFCTRMDSLGFWRFITTRKKELDSIRAKIPAALSDCIDPARFVLEAISGVFPEDKRENKSERLNDLGWACVMVLESLIPVVVDPILGDKRMLVTPKVKENAGKIAEEWKKSLEQRGGIENVKTPDVHTFLQHLVTFGIVKNEDLDLYRKLVVGSAWRKQMPKLAVSLGLGDKMPDMIEELISRGQQVDAVHFTYEVGLVDRFPPVPLLKAFLKDAKKAATTILEDPNNSSRAA-LAARKEQSALRAVVKCIEEYKLEAEFPSESLKKRLEQLEKVKTEKKRPAAVPANKRTRTNNGGPMPPAKAGRLTNAYVSSFPAPPTFVRSPSHTQYPATGVPQYQVAPPMYGHGSRSPQASHYVYSPEAASPPLAASYPGVPMSYPAYGGYGNGMTPVYQQAYYR 522
            M SI DPGE+T     SFD+FQRQTSLMTSCTLLW+ELSDHF +LE ++  KS A+++K+  LD ET  SL +LE RE+++  S+ +A E VE    AAL+  L+    D+   VD+ EGLLL L+ FC +MDSLGFWRFIT +KKELD++RA++P AL++C+DP RFVLE+IS VFP DKR +KSER NDLGWACV+VLESLIPVVVDP++G  R+LVTP VKE A +IAE WK SLE+RGGIENVKTPDVHTFLQHLVTFGIVK  D+DLYRKLVVGSAWRKQMPKLAVSLGLGD+MPDMI+ELISRGQQ+DAVHFTYEVGLVD+FPPVPLLKAFLKDAKKAAT+ILEDPN+  RAA LA RKEQSALRAV+KCIEEYKLEAEFP E+LKKRL+QLEK KTEK++PAAVPANKRTR NNGGPMPPAKAGRLTNAYVSSFPA PT +RSPSH QYPA G+  Y   P MY  GSRSP  + Y YSPEAA PPLA SYP  PM+YPAYGGYGNGM P YQQAYYR
Sbjct:    1 MGSIPDPGELTELTPPSFDEFQRQTSLMTSCTLLWRELSDHFLSLEQNILKKSEALRNKIQTLDHETKASLNDLEKREVTIQGSVEIALEKVEANTEAALTALLKASHEDENGEVDNGEGLLLTLKSFCFKMDSLGFWRFITGKKKELDALRAQMPLALAECVDPPRFVLESISEVFPVDKRVDKSERGNDLGWACVLVLESLIPVVVDPMIGKSRLLVTPSVKERAKEIAETWKASLEERGGIENVKTPDVHTFLQHLVTFGIVKKGDVDLYRKLVVGSAWRKQMPKLAVSLGLGDEMPDMIKELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAATSILEDPNSPGRAAQLAGRKEQSALRAVIKCIEEYKLEAEFPPENLKKRLDQLEKTKTEKRKPAAVPANKRTRANNGGPMPPAKAGRLTNAYVSSFPAAPTIMRSPSHAQYPA-GISPYHSPPTMY--GSRSPPTNPYAYSPEAAPPPLAGSYPIAPMNYPAYGGYGNGMAPAYQQAYYR 522
[Close]
BLAST of XM_017367225.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6HDQ4 (FRIGIDA-like protein {ECO:0000256|RuleBase:RU364012})

HSP 1 Score: 785.408 bits (2027), Expect = 0.000e+0
Identity = 393/528 (74.43%), Postives = 443/528 (83.90%), Query Frame = 0
 
Query:    1 MASIADPGEVTHP-PQASFDDFQRQTSLMTSCTLLWKELSDHFTTLENDLKMKSAAIKSKLDKLDSETSLSLKNLETRELSLVKSMSVAFETVEK-RKAAALSLEEDSGDDVAAVDDSEGLLLRLRRFCTRMDSLGFWRFITTRKKELDSIRAKIPAALSDCIDPARFVLEAISGVFPEDKRENKSERLNDLGWACVMVLESLIPVVVDPILGDKRMLVTPKVKENAGKIAEEWKKSLEQRGGIENVKTPDVHTFLQHLVTFGIVKNEDLDLYRKLVVGSAWRKQMPKLAVSLGLGDKMPDMIEELISRGQQVDAVHFTYEVGLVDRFPPVPLLKAFLKDAKKAATTILEDPNNSSRAA-LAARKEQSALRAVVKCIEEYKLEAEFPSESLKKRLEQLEKVKTEKKRPAAVPANKRTRTNNGGPMPPAKAGRLTNAYVSSFPAPPTFVRSPSHTQYPATGVPQY----QVAPPMYGHGSRSPQASHYVYSPEAASPPLAASYPGVPMSYPAYGGYGNGMTPVYQQAYY 521
            M SI DPG+++    Q SFDDFQ+QTSLMTSCTLLWKELSDHFT+LE +L+ KS A+K+K   LD  T  SL  L+ RE+++  S+ +A   VE+ R+AA ++L + + D    VDDSEGLLL+L+ FC +MDS  FWRFIT RKKELD++RA+ P AL++C+DPA+FVLEAIS VFP DKR  KSER NDLGWACV+VLESLIPVVVDP+LG  R+LVTP VKE A  IAE WK SL+QRGGIENVKTPDVHTFLQHLVTFGIVK ED+DLYRKLVVGSAWRKQMPKLAVSLGLGDKM DMIEEL++RGQQVDAVHFTYEVGLVD+FPPVPLLKAFL+D+KKAAT+ILEDPNNS RA  LA RKEQSALRAV+KCIEEYKLEAEFP E+LKKRLEQLEK KT+KKRPAAVPANKRTR +NGGPMPPAKAGRLTNAYVSSFPA PTF+RSPSHTQYPA  VP Y      AP MY  GSRSP A+ Y YSPEAA PPLA SYPG P++YPAYGGYGNGM P YQQAYY
Sbjct:    1 MGSIPDPGDISGELNQPSFDDFQKQTSLMTSCTLLWKELSDHFTSLEQNLQKKSEALKNKFQTLDHHTKESLGVLKKREVTIDGSVEIALGKVEESREAALIALLKGAQD--GEVDDSEGLLLKLKSFCLKMDSKEFWRFITARKKELDALRAQTPEALAECVDPAKFVLEAISEVFPVDKRVEKSERSNDLGWACVLVLESLIPVVVDPVLGKSRLLVTPSVKERAKDIAETWKASLDQRGGIENVKTPDVHTFLQHLVTFGIVKEEDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKMADMIEELVNRGQQVDAVHFTYEVGLVDKFPPVPLLKAFLRDSKKAATSILEDPNNSGRAVNLAGRKEQSALRAVIKCIEEYKLEAEFPPENLKKRLEQLEKAKTDKKRPAAVPANKRTRASNGGPMPPAKAGRLTNAYVSSFPAAPTFIRSPSHTQYPA-AVPAYPYDRPAAPAMY--GSRSPPANPYAYSPEAA-PPLAGSYPGAPINYPAYGGYGNGMAPAYQQAYY 522
[Close]
BLAST of XM_017367225.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A1VQL9 (FRIGIDA-like protein {ECO:0000256|RuleBase:RU364012})

HSP 1 Score: 780.785 bits (2015), Expect = 0.000e+0
Identity = 382/525 (72.76%), Postives = 435/525 (82.86%), Query Frame = 0
 
Query:    1 MASIADPGEVTHPPQASFDDFQRQTSLMTSCTLLWKELSDHFTTLENDLKMKSAAIKSKLDKLDSETSLSLKNLETRELSLVKSMSVAFETVEKRKAAALSLEEDSGDDV--AAVDDSEGLLLRLRRFCTRMDSLGFWRFITTRKKELDSIRAKIPAALSDCIDPARFVLEAISGVFPEDKRENKSERLNDLGWACVMVLESLIPVVVDPILGDKRMLVTPKVKENAGKIAEEWKKSLEQRGGIENVKTPDVHTFLQHLVTFGIVKNEDLDLYRKLVVGSAWRKQMPKLAVSLGLGDKMPDMIEELISRGQQVDAVHFTYEVGLVDRFPPVPLLKAFLKDAKKAATTILEDPNNSSRAA-LAARKEQSALRAVVKCIEEYKLEAEFPSESLKKRLEQLEKVKTEKKRPAAVPANKRTRTNNGGPMPPAKAGRLTNAYVSSFPAPPTFVRSPSHTQYPATGVPQYQVAPPMYGHGSRSPQASHYVYSPEAASPPLAASYPGVPMSYPAYGGYGNGMTPVYQQAYYR 522
            M SI DPGE+T     SFD+FQRQTSLMTSCTLLWKELSDHF++LE +L  KS A+++K+  LD++T  SL  LE RE S+  S+ +A E VE  K  AL+  + + DD     VD+ EGLLL L+ FC +MD+LGFWRF+T +KKELD++RA++P AL++CIDP RFVLE+IS VFP DKR  KSER+NDLGWACV+VLESLIPVVVDP++G  R+LVTP VKE A +IA+ WK SLE+RGGIENVKTPDVHTFLQHLVTFGIVK ED++LYRKLVVGSAWRKQMPKLAVSLGLGDKMPDMIEELISRGQQ+DAVHFTYEVGLVD+F PVPLLKAFLKDA+KAA +ILEDPNN  RAA LA RKEQSALRAV+KCIEEYKLEAEFP E+LKKRLEQLEK KTEK++P AVPANKRTR NNGGPMPPAKAGRLTNAYVSSFPA PT VRSPSH QYPA G+P Y   P +Y  GSRSP A+ Y YSPE A PPL  SYP  PM+YPAYGGYGNG+ P Y  AYYR
Sbjct:    1 MGSIPDPGELTELTPPSFDEFQRQTSLMTSCTLLWKELSDHFSSLEQNLLQKSEALRNKIQTLDNQTKASLSELEKREFSIQGSIQIALEKVESSKVTALAALQKASDDEENGEVDNGEGLLLTLKSFCFKMDALGFWRFVTGKKKELDALRAQMPLALAECIDPPRFVLESISEVFPVDKRVEKSERVNDLGWACVLVLESLIPVVVDPVIGKSRLLVTPSVKERAKEIADTWKASLEERGGIENVKTPDVHTFLQHLVTFGIVKEEDVELYRKLVVGSAWRKQMPKLAVSLGLGDKMPDMIEELISRGQQLDAVHFTYEVGLVDKFRPVPLLKAFLKDARKAAASILEDPNNLGRAAQLAGRKEQSALRAVIKCIEEYKLEAEFPPENLKKRLEQLEKSKTEKRKPVAVPANKRTRANNGGPMPPAKAGRLTNAYVSSFPAAPTMVRSPSHVQYPA-GIPSYHSPPTIY--GSRSPPANPYAYSPEGAPPPLPGSYPVAPMTYPAYGGYGNGIPPAY-HAYYR 521
[Close]
BLAST of XM_017367225.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A067L6Q2 (FRIGIDA-like protein {ECO:0000256|RuleBase:RU364012})

HSP 1 Score: 778.474 bits (2009), Expect = 0.000e+0
Identity = 379/524 (72.33%), Postives = 441/524 (84.16%), Query Frame = 0
 
Query:    1 MASIADPGEVTHPPQASFDDFQRQTSLMTSCTLLWKELSDHFTTLENDLKMKSAAIKSKLDKLDSETSLSLKNLETRELSLVKSMSVAFETVEKRKAAAL-SLEEDSGDDV-AAVDDSEGLLLRLRRFCTRMDSLGFWRFITTRKKELDSIRAKIPAALSDCIDPARFVLEAISGVFPEDKRENKSERLNDLGWACVMVLESLIPVVVDPILGDKRMLVTPKVKENAGKIAEEWKKSLEQRGGIENVKTPDVHTFLQHLVTFGIVKNEDLDLYRKLVVGSAWRKQMPKLAVSLGLGDKMPDMIEELISRGQQVDAVHFTYEVGLVDRFPPVPLLKAFLKDAKKAATTILEDPNNSSRAALAARKEQSALRAVVKCIEEYKLEAEFPSESLKKRLEQLEKVKTEKKRPAAVPANKRTRTNNGGPMPPAKAGRLTNAYVSSFPAPPTFVRSPSHTQYPATGVPQYQVAPPMYGHGSRSPQASHYVYSPEAASPPLAASYPGVPMSYPAYGGYGNGMTPVYQQAYYR 522
            M SI DPGE+T   Q SFD+FQRQTSLMTSCTLLWKELSDHF++LE +L+ KS A+K+K   LD +T  SL +L+ RE+++  S+ +A + VE+ + AAL SL+  + D     VD+ +GLL  L+ FC +M+S  FW+F+ T+KKELD +R++IP AL++C+DP++FVLEAIS VFP DKR  ++E+ NDLGWACV++LESLIPVVVDP++G  R+LVTP VKE A +IAE WK+SLE+RGGIENVKTPDVHTFLQHLVTFGIVK ED+DLYRKLVVGSAWRKQMPKLAVSLGLG+KMPDMIEELISRGQQ+DAVHFTYEVGLVD+FPPVPLLK FLKD+KKAA +ILEDP+    A LAARKEQSALRAV+KCIEEYKLEAEFP E+LKKRLEQLEK KTEKKRPAAVPANKRTR +NGGPMPPAKAGRLTNAYVSSFPAPPTFVRSPSHTQYP TGVP Y    P   +GSRSPQ S Y YSPEAA PP+A SYPG P++YPAYGGYGNG  P YQQAYYR
Sbjct:    1 MGSIPDPGELTELTQPSFDEFQRQTSLMTSCTLLWKELSDHFSSLEQNLQKKSEALKNKFQTLDHQTKTSLASLKKREVTIDGSVEIALKRVEQHREAALKSLDNPNFDHPDGEVDNGDGLLQLLKSFCLKMESREFWKFVITKKKELDVLRSQIPLALAECVDPSKFVLEAISEVFPVDKRGERTEKGNDLGWACVLILESLIPVVVDPVIGKSRLLVTPSVKERAKEIAETWKRSLEERGGIENVKTPDVHTFLQHLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGEKMPDMIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKKFLKDSKKAAASILEDPDTGRAAHLAARKEQSALRAVIKCIEEYKLEAEFPPENLKKRLEQLEKAKTEKKRPAAVPANKRTRASNGGPMPPAKAGRLTNAYVSSFPAPPTFVRSPSHTQYP-TGVPAY--PSPAAVYGSRSPQ-SPYAYSPEAAPPPMAGSYPGAPLNYPAYGGYGNGFAPAYQQAYYR 520
[Close]
BLAST of XM_017367225.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PK61 (FRIGIDA-like protein {ECO:0000256|RuleBase:RU364012})

HSP 1 Score: 777.704 bits (2007), Expect = 0.000e+0
Identity = 386/532 (72.56%), Postives = 439/532 (82.52%), Query Frame = 0
 
Query:    1 MASIADPG---------EVTHPPQASFDDFQRQTSLMTSCTLLWKELSDHFTTLENDLKMKSAAIKSKLDKLDSETSLSLKNLETRELSLVKSMSVAFETVEKRKAAALSLEE-DSGDDVAAVDDSEGLLLRLRRFCTRMDSLGFWRFITTRKKELDSIRAKIPAALSDCIDPARFVLEAISGVFPEDKRENKSERLNDLGWACVMVLESLIPVVVDPILGDKRMLVTPKVKENAGKIAEEWKKSLEQRGGIENVKTPDVHTFLQHLVTFGIVKNEDLDLYRKLVVGSAWRKQMPKLAVSLGLGDKMPDMIEELISRGQQVDAVHFTYEVGLVDRFPPVPLLKAFLKDAKKAATTILEDPNNSSRAA-LAARKEQSALRAVVKCIEEYKLEAEFPSESLKKRLEQLEKVKTEKKRPAAVPANKRTRTNNGGPMPPAKAGRLTNAYVSSFPAPPTFVRSPSHTQYPATGVPQYQVAPPMYGHGSRSPQASHYVYSPEAASPPLAASYPGVPMSYPAYGGYGNGMTPVYQQAYY 521
            M SIADPG             PP +SFD+FQRQTSLMTSCTLLWKELSDHF+ LE +L  KS A+K+K   LD++T  +L+ LE RE+++  S+S+    +E+RK AAL++   + G D   VDD EGLLL+LR +CT+M++ GFWRF+T RKKELDS+RA++  AL+DC+DPARFVLEAIS VFP DKR  KSE +NDLGWACV++LESLIP+VVDPILG  R+LVTP +KE A  IAE WK SL++RGGIENVKTPDVHTFLQHLVTFGIVK ED+DLYRKLVVGSAWRKQMPKLAVSLGLGDKMPDMIEELISRGQQVDAVHFT+EVGL D+FPPVPLLKAFLKDAKKAAT+I+EDPNNS R+  LAARKEQSALRAV+KCIEEYKLEAEFP E+LKKRLEQLEK K EKKRPAAVPANKRTR NNGGPMPPAKAGR TNAYVSSFPA P FVRSPSHTQYPA GVP Y  +P MY  GSRSP  + Y YSPEAASPP + SY   P++YP YGGYGNG+ P YQ AYY
Sbjct:    1 MGSIADPGGEFDDLTPSSPPPPPPSSFDEFQRQTSLMTSCTLLWKELSDHFSYLEQNLLKKSEALKNKFKTLDNQTKETLQVLEKREVTIEGSVSIFLGKMEERKEAALAVAAVNGGGDAGEVDDGEGLLLKLRSYCTKMNAEGFWRFVTARKKELDSMRAQMAVALADCVDPARFVLEAISEVFPVDKRAEKSEGVNDLGWACVLILESLIPLVVDPILGKSRLLVTPSMKEQAKDIAETWKASLDERGGIENVKTPDVHTFLQHLVTFGIVKKEDIDLYRKLVVGSAWRKQMPKLAVSLGLGDKMPDMIEELISRGQQVDAVHFTFEVGLEDKFPPVPLLKAFLKDAKKAATSIMEDPNNSGRSVHLAARKEQSALRAVIKCIEEYKLEAEFPPENLKKRLEQLEKAKIEKKRPAAVPANKRTRANNGGPMPPAKAGRSTNAYVSSFPAAPQFVRSPSHTQYPA-GVPMYPSSPAMY--GSRSPPTNPYAYSPEAASPPFSHSYQVAPINYPPYGGYGNGVAPAYQHAYY 529
[Close]
BLAST of XM_017367225.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P4A4E1 (FRIGIDA-like protein {ECO:0000256|RuleBase:RU364012})

HSP 1 Score: 775.393 bits (2001), Expect = 0.000e+0
Identity = 383/527 (72.68%), Postives = 431/527 (81.78%), Query Frame = 0
 
Query:    1 MASIADPGEVTHPPQASFDDFQRQTSLMTSCTLLWKELSDHFTTLENDLKMKSAAIKSKLDKLDSETSLSLKNLETRELSLVKSMSVAFETVEKRKAAALSLEE----DSGDDVAAVDDSEGLLLRLRRFCTRMDSLGFWRFITTRKKELDSIRAKIPAALSDCIDPARFVLEAISGVFPEDKRENKSERLNDLGWACVMVLESLIPVVVDPILGDKRMLVTPKVKENAGKIAEEWKKSLEQRGGIENVKTPDVHTFLQHLVTFGIVKNEDLDLYRKLVVGSAWRKQMPKLAVSLGLGDKMPDMIEELISRGQQVDAVHFTYEVGLVDRFPPVPLLKAFLKDAKKAATTILEDPNNSSRAA-LAARKEQSALRAVVKCIEEYKLEAEFPSESLKKRLEQLEKVKTEKKRPAAVPANKRTRTNNGGPMPPAKAGRLTNAYVSSFPAPPTFVRSPSHTQYPATGVPQYQVAPPMYGHGSRSPQASHYVYSPEAASPPLAASYPGVPMSYPAYGGYGNGMTPVYQQAYYR 522
            M SI DPGE+T     SF++FQ+QTSLMTSCTLLWKELSDHF+ LE +L  KS A+K K+  LDSET   L+ LE RE+++  S+ +A   VE  K AAL   +     S +D   VDD EGLLL+L+ FC  MD+  FWRF+T +KKELD +RA++P AL++C+DPA+FVLEAIS VFP DKR  KS++ NDLGWACV+VLESLIPVVVDP++G  R+L+TP VKE A  IA+ WK SLE+RGGIENVKTPDVHTFLQHLVTFGIVK ED+DLYRKLVVGSAWRKQMPKLAVSLGL DKMPDMIEELIS+GQQ+DAVHFTYEVGLVD+FPPVPLLKAFLKDAKK A +ILEDPNN  RAA LA RKEQSALRAV+KCIEEYKLEA+FP E+LKKRLEQLEKVKTEKKRPA VPANKRTR NNGGPMPPAKAGRL NAYVSSFPA P FVRSPSH QYPA  VP Y   P MY  GSRSP A+ Y YSPEAA  P+A SYPG PM+YPAYGGYGNGM P YQQAYYR
Sbjct:    1 MGSIPDPGELTELTPPSFEEFQKQTSLMTSCTLLWKELSDHFSYLEQNLLKKSEALKRKIQTLDSETKEGLRELEKREVTIGDSVGIALGKVEMSKEAALGALKKGLSSSANDNGEVDDGEGLLLKLKSFCLNMDAGEFWRFVTGKKKELDVLRAQMPLALAECVDPAKFVLEAISEVFPVDKRAEKSDKGNDLGWACVLVLESLIPVVVDPVIGKSRLLMTPSVKERAKDIADTWKASLEERGGIENVKTPDVHTFLQHLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLSDKMPDMIEELISKGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKVAASILEDPNNVGRAAQLAGRKEQSALRAVIKCIEEYKLEAQFPPENLKKRLEQLEKVKTEKKRPATVPANKRTRANNGGPMPPAKAGRLANAYVSSFPAAPAFVRSPSHAQYPAP-VPPYHSPPTMY--GSRSPPANPYAYSPEAA--PIAGSYPGAPMNYPAYGGYGNGMAPAYQQAYYR 522
[Close]
BLAST of XM_017367225.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RV06 (FRIGIDA-like protein {ECO:0000256|RuleBase:RU364012})

HSP 1 Score: 775.007 bits (2000), Expect = 0.000e+0
Identity = 387/528 (73.30%), Postives = 437/528 (82.77%), Query Frame = 0
 
Query:    1 MASIADPG----EVTHPPQ--ASFDDFQRQTSLMTSCTLLWKELSDHFTTLENDLKMKSAAIKSKLDKLDSETSLSLKNLETRELSLVKSMSVAFETVEKRKAAALSLEEDSGDDVAAVDDSEGLLLRLRRFCTRMDSLGFWRFITTRKKELDSIRAKIPAALSDCIDPARFVLEAISGVFPEDKRENKSERLNDLGWACVMVLESLIPVVVDPILGDKRMLVTPKVKENAGKIAEEWKKSLEQRGGIENVKTPDVHTFLQHLVTFGIVKNEDLDLYRKLVVGSAWRKQMPKLAVSLGLGDKMPDMIEELISRGQQVDAVHFTYEVGLVDRFPPVPLLKAFLKDAKKAATTILEDPNNSSRAA-LAARKEQSALRAVVKCIEEYKLEAEFPSESLKKRLEQLEKVKTEKKRPAAVPANKRTRTNNGGPMPPAKAGRLTNAYVSSFPAPPTFVRSPSHTQYPATGVPQYQVAPPMYGHGSRSPQASHYVYSPEAASPPLAASYPGVPMSYPAYGGYGNGMTPVYQQAYY 521
            M SIADPG    E+THPP   +SFD+FQRQTSLMTSCTLLWKELSDH ++LE +L  KS A+K+K   LD++T  +L+ LE RE ++  S+S+    VE+RK AAL+    +  D   VDD EGLLL+LR +CT+M++ GFWRF+T RKKELDS+R ++ AAL+DC+DPARFVLEAIS VFP D+R  KSE +NDLGWACV++LESLIPVVVDPILG  R+LVTP +KE A  IAE WK SL++RGGIENVKTPDVHTFLQHLVTFGIVK ED+DLYRKLVVGSAWRKQMPKLAVSLGLGDKMPDMIEELISRGQQVDAVHFT+EVGL D FPPVPLLKAFLKDAKKAAT+I+EDPNNS R+  LAARKEQSALRAV+KCIEEYKLE EFP E+LKKRLEQLEK K EKKRPAAVPANKRTR NNGGPMPPAKAGR TNAYVSSFPA P FVRSPSHTQYPA GVP Y  +P MY  GSRSP  + Y Y PEAASPP + SY   PM+YP YGGYGNG+ P YQ AYY
Sbjct:    1 MGSIADPGGEFGELTHPPTPPSSFDEFQRQTSLMTSCTLLWKELSDHLSSLEQNLLKKSEALKNKFTTLDNQTKETLQVLEKREFTIDGSVSIFIGKVEERKEAALAA---ASVDAGEVDDGEGLLLKLRSYCTKMNAEGFWRFVTARKKELDSMRDQMAAALADCVDPARFVLEAISEVFPVDRRAEKSEGVNDLGWACVLILESLIPVVVDPILGKSRLLVTPSMKERAKDIAETWKASLDERGGIENVKTPDVHTFLQHLVTFGIVKKEDIDLYRKLVVGSAWRKQMPKLAVSLGLGDKMPDMIEELISRGQQVDAVHFTFEVGLEDEFPPVPLLKAFLKDAKKAATSIMEDPNNSGRSVHLAARKEQSALRAVIKCIEEYKLETEFPPENLKKRLEQLEKAKIEKKRPAAVPANKRTRANNGGPMPPAKAGRSTNAYVSSFPAAPQFVRSPSHTQYPA-GVPMYPSSPAMY--GSRSPPTNPYAYPPEAASPPFSHSYQVAPMNYPPYGGYGNGVAPAYQHAYY 522
[Close]
BLAST of XM_017367225.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2LVX4 (FRIGIDA-like protein {ECO:0000256|RuleBase:RU364012})

HSP 1 Score: 774.622 bits (1999), Expect = 0.000e+0
Identity = 384/535 (71.78%), Postives = 441/535 (82.43%), Query Frame = 0
 
Query:    1 MASIADPGEVTHPPQASFDDFQRQTSLMTSCTLLWKELSDHFTTLENDLKMKSAAIKSKLDKLDSETSLSLKNLETRELSLVKSMSVAFETV-EKRKAAALSLEEDSGDDV-AAVDDSEGLLLRLRRFCTRMDSLGFWRFITTRKKELDSIRAKIPAALSDCIDPARFVLEAISGVFPEDKRENKSERLNDLGWACVMVLESLIPVVVDPILGDKRMLVTPKVKENAGKIAEEWKKSLEQRGGIENVKTPDVHTFLQHLVTFGIVKNEDLDLYRKLVVGSAWRKQMPKLAVSLGLGDKMPDMIEELISRGQQVDAVHFTYEVGLVDRFPPVPLLKAFLKDAKKAATTILEDPNNSSRAA-LAARKEQSALRAVVKCIEEYKLEAEFPSESLKKRLEQLEKVKTEKKRPAAV----------PANKRTRTNNGGPMPPAKAGRLTNAYVSSFPAPPTFVRSPSHTQYPATGVPQYQVAPPMYGHGSRSPQASHYVYSPEAASPPLAASYPGVPMSYPAYGGYGNGMTPVYQQAYYR 522
            M SI DPGE+T     SFD+FQRQTSLMTSCTLLWKELSDHFT+LE +L  KS A+++K+  LD ET +SL  LE RE+++  S+ +A   + E + AA ++L + SG+D    VDD EGLLL L+ FC +MD+LGFWRF+T +KKEL+S+RA++P AL++C+DPARFVLE+IS VFP DKR  KSER NDLGWACV+VLESLIPVVVDP++G  R+LVTP VK  A +IAE WK SLE+RGGIENVKTPDVHTFLQHLVTFGIVK ED++LYRKLVVGSAWRKQMPKLAVSLGLGDKMPDMIEELISRGQQ+DAVHFTYEVGLVD+FPPVPLLKA+LKDA+KAA +I++DPNN  RAA LA RKEQSALRAV+KCIEEYKLE +FP E LKKRLEQLEK KTEK++PAAV          PANKRTR N+GGPMPPAKAGRLTNAYVSSFPAPPT VRSPSH QYPA G+P Y   PPMY  GSRSP  + Y YSPEAA PPL  SYP  PM+YPAYGGYGNG+ P YQQAYYR
Sbjct:    1 MGSIPDPGELTELTPPSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLLKKSEALRNKIQSLDQETKVSLSELEQREVTIEGSVKIALGKLGENKDAALIALRKVSGEDENGEVDDGEGLLLVLKSFCVKMDALGFWRFVTGKKKELESLRAQMPLALAECLDPARFVLESISEVFPVDKRVEKSERGNDLGWACVLVLESLIPVVVDPVIGKSRLLVTPTVKARAKRIAETWKASLEERGGIENVKTPDVHTFLQHLVTFGIVKKEDVNLYRKLVVGSAWRKQMPKLAVSLGLGDKMPDMIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAYLKDARKAAASIMDDPNNPGRAAQLAGRKEQSALRAVIKCIEEYKLEDQFPPEHLKKRLEQLEKAKTEKRKPAAVPANKRTAAVLPANKRTRANSGGPMPPAKAGRLTNAYVSSFPAPPTIVRSPSHAQYPA-GIPAYHSPPPMY--GSRSPPTNPYAYSPEAA-PPL-GSYPVAPMNYPAYGGYGNGIAPAYQQAYYR 530
Match NameStatsDescription
A0A5B7CG20E-Value: 0.000e+0, PID: 76.38FRIGIDA-like protein {ECO:0000256|RuleBase:RU36401... [more]
A0A2I4EFN6E-Value: 0.000e+0, PID: 74.48FRIGIDA-like protein {ECO:0000256|RuleBase:RU36401... [more]
A0A5N6RH05E-Value: 0.000e+0, PID: 73.33FRIGIDA-like protein {ECO:0000256|RuleBase:RU36401... [more]
F6HDQ4E-Value: 0.000e+0, PID: 74.43FRIGIDA-like protein {ECO:0000256|RuleBase:RU36401... [more]
A0A6A1VQL9E-Value: 0.000e+0, PID: 72.76FRIGIDA-like protein {ECO:0000256|RuleBase:RU36401... [more]
A0A067L6Q2E-Value: 0.000e+0, PID: 72.33FRIGIDA-like protein {ECO:0000256|RuleBase:RU36401... [more]
A0A2R6PK61E-Value: 0.000e+0, PID: 72.56FRIGIDA-like protein {ECO:0000256|RuleBase:RU36401... [more]
A0A6P4A4E1E-Value: 0.000e+0, PID: 72.68FRIGIDA-like protein {ECO:0000256|RuleBase:RU36401... [more]
A0A2R6RV06E-Value: 0.000e+0, PID: 73.30FRIGIDA-like protein {ECO:0000256|RuleBase:RU36401... [more]
A0A7N2LVX4E-Value: 0.000e+0, PID: 71.78FRIGIDA-like protein {ECO:0000256|RuleBase:RU36401... [more]
back to top
Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.