XM_017366707.1 | CarrotOmics

Resource Type:

Polypeptide

Name:

XM_017366707.1

Identifier:

XM_017366707.1-protein

Sequence:

MPRSIVKHYPLISPPRILMTKQLIDDDNTYPNLPNDASSSGESKYDQESG
ASSGLKNADIVSKRNAIFSCTLPFRIDPTLARIIAAEALGSFILIFCICG
IVAITQIMHGQVGLLEYAVTAALTVIVVVFSIGGISGAHINPAVTIAFAA
SGPFPWSKVPLYILAQIVGSVAAAFIGKLVYGIKAELMMTRPMQGYVSAF
FVELIVTFIILFVTCAIINEAQTVGPLAGIVAGVAIGLGVLITGPVSGAS
MNPARSLAPAIISWKFDDIWIYILAPTIGAVTGALCYRVLCLHCKVNYRI
AASPAPTLPTNVTS

Sequence Length:

314

Sequence Checksum:

f369b8f3e0a219b978037b9c4d9857bc

View location in JBrowse:

DCARv2_Chr8:25572639..25574334-

Organism:

Daucus carota subspecies sativus

Relationship:

There is 1 relationship.
Relationships
The polypeptide, XM_017366707.1, derives from mRNA, XM_017366707.1.

Blast Results:

The following BLAST results are available for this feature:

BLAST of XM_017366707.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR

BLAST of XM_017366707.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10

[Close]

BLAST of XM_017366707.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P6QX80 ((Putative major intrinsic protein {ECO:0000313|EMBL:PRQ38792.1}))

HSP 1 Score: 326.25 bits (835), Expect = 1.805e-109
Identity = 164/274 (59.85%), Postives = 206/274 (75.18%), Query Frame = 0

Query:   21 KQLIDDDNTYPNLPNDASSSGESKYDQESGASSGLKN-ADIVSKRNAIFSCTLPFRIDPTLARIIAAEALGSFILIFCICGIVAITQIMHGQVGLLEYAVTAALTVIVVVFSIGGISGAHINPAVTIAFAASGPFPWSKVPLYILAQIVGSVAAAFIGKLVYGIKAELMMTRPMQGYVSAFFVELIVTFIILFVTCAIINEAQTVGPLAGIVAGVAIGLGVLITGPVSGASMNPARSLAPAIISWKFDDIWIYILAPTIGAVTGALCYRVLCLH 293
            K L ++    P + N AS+SG SK D     S+ L N AD     N+ F C  P  ++  L R + AE +G+FIL+FC+CGI+A T+++ G VGL+EYA TA LTV+VV+FS+G ISGAH+NPAVT+AFA  G FPWS+VPLY LAQ +GSV AAF+GKLVYGIK +LM+T+P+QG VSAF+VELI TFI+LF+  ++ + AQ VGPL+G V G+AIGL VLITGPVSG S+NPARSL PAI+SW F DIWIYI APTIGAV GAL ++VL L 
Sbjct:    2 KGLYEEAKPSPQISNSASTSGHSKEDDPEMGSNALSNSADHHVLNNSAFFC-FPSGMNLNLVRAVVAEMVGTFILMFCVCGIIASTELLRGDVGLMEYASTAGLTVVVVIFSVGSISGAHVNPAVTVAFATFGHFPWSRVPLYTLAQTLGSVLAAFVGKLVYGIKPDLMITKPVQGCVSAFWVELIATFIVLFLAASMTHHAQAVGPLSGFVVGIAIGLAVLITGPVSGGSLNPARSLGPAIVSWNFKDIWIYICAPTIGAVAGALLFQVLRLR 274

[Close]

BLAST of XM_017366707.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834H9F8 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7150271.1}))

HSP 1 Score: 325.094 bits (832), Expect = 6.210e-109
Identity = 166/286 (58.04%), Postives = 209/286 (73.08%), Query Frame = 0

Query:   21 KQLIDDDNTYPNLPNDASSSGESKYDQESGASSGLKNADIVSKRNAIFSCTLPFRIDPTLARIIAAEALGSFILIFCICGIVAITQIMHGQVGLLEYAVTAALTVIVVVFSIGGISGAHINPAVTIAFAASGPFPWSKVPLYILAQIVGSVAAAFIGKLVYGIKAELMMTRPMQGYVSAFFVELIVTFIILFVTCAIINEAQTVGPLAGIVAGVAIGLGVLITGPVSGASMNPARSLAPAIISWKFDDIWIYILAPTIGAVTGALCYRVLCLHCKVNYRIAASPAP 306
            KQL +     P+  N AS+S +S+YDQE G++   +N+D   K  A F    P  +D    R I AEA+G+FIL+FCIC I+AITQ+M G+VGLLEYA TAAL+V+V+VFSIG ISGAH+NPAVTIAFA  G FPWSKVPLYI+AQ +GSV A ++GKLVYGI +ELM TRP+ G  +AF+VELI T II+F+  A+ + A+ +G LAG + G AIGL VLITGPVSG SMNPARSL PA++SWKFDD+WIY+ APTIGAV GA  Y  + L     +   + P+P
Sbjct:    2 KQLFEAKPC-PDASNQASTSEQSQYDQERGSNLVSRNSDEQMKNAACFG--FPNGMDLDSLRPILAEAIGTFILMFCICAIIAITQLMRGEVGLLEYAATAALSVVVIVFSIGAISGAHVNPAVTIAFATCGQFPWSKVPLYIMAQGIGSVLATYVGKLVYGISSELMTTRPLHGSAAAFWVELIATLIIMFLASALTHHAKYIGHLAGFIVGTAIGLAVLITGPVSGGSMNPARSLGPALVSWKFDDVWIYLTAPTIGAVGGAFLYGAVRLR---RHACCSDPSP 281

[Close]

BLAST of XM_017366707.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2N9HNN8 ((Uncharacterized protein {ECO:0000313|EMBL:SPD13353.1}))

HSP 1 Score: 324.324 bits (830), Expect = 7.985e-109
Identity = 167/281 (59.43%), Postives = 215/281 (76.51%), Query Frame = 0

Query:   16 RILMTKQLIDDDNTYPNLPNDASSSG--ESKYDQESGASSGLKNADIVSKRNAIFSCTLPFRIDPTLARIIAAEALGSFILIFCICGIVAITQIMHGQVGLLEYAVTAALTVIVVVFSIGGISGAHINPAVTIAFAASGPFPWSKVPLYILAQIVGSVAAAFIGKLVYGIKAELMMTRPMQGYVSAFFVELIVTFIILFVTCAIINEAQTVGPLAGIVAGVAIGLGVLITGPVSGASMNPARSLAPAIISWKFDDIWIYILAPTIGAVTGALCYRVLCLHC 294
            R L+ K L +D    P+  N AS+SG  +SK DQE G+++  K+  ++  +N+ FSC L   +D  L R++ AE LG+FIL+F +CGI+A T+++ G+VGLLEYA TA LTV+VV+FSIG IS AH+NPAVTIAFA  G FPW KVPLYILAQI+GSV A ++G+ VYG+KAE+M TRP+QG  SAF+VELI  FII+F+  ++  +AQ+VG L+G V G++I L VLITGPVSG SMNPARSL PAIISWKF+D+WIY+ AP IGAVTGAL +RVL L C
Sbjct:    2 RKLIMKSLFEDQPP-PHTSNHASTSGCGQSKDDQEMGSNAMSKSGSVL--KNSAFSCFLQ-GMDLNLGRMVLAEMLGTFILMFAVCGIIACTRLIKGEVGLLEYAATAGLTVVVVIFSIGPISCAHVNPAVTIAFATLGHFPWYKVPLYILAQILGSVLATYVGQSVYGVKAEIMATRPLQGCSSAFWVELIAAFIIMFLAASLTYQAQSVGHLSGFVVGISIALAVLITGPVSGGSMNPARSLGPAIISWKFNDLWIYVTAPVIGAVTGALTFRVLRLRC 278

[Close]

BLAST of XM_017366707.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A498HNL3 ((Uncharacterized protein {ECO:0000313|EMBL:RXH70503.1}) (Fragment))

HSP 1 Score: 325.865 bits (834), Expect = 1.246e-108
Identity = 156/258 (60.47%), Postives = 202/258 (78.29%), Query Frame = 0

Query:   35 NDASSSGESKYDQESGASSGLKNADIVSKRNAIFSCTLPFRIDPTLARIIAAEALGSFILIFCICGIVAITQIMHGQVGLLEYAVTAALTVIVVVFSIGGISGAHINPAVTIAFAASGPFPWSKVPLYILAQIVGSVAAAFIGKLVYGIKAELMMTRPMQGYVSAFFVELIVTFIILFVTCAIINEAQTVGPLAGIVAGVAIGLGVLITGPVSGASMNPARSLAPAIISWKFDDIWIYILAPTIGAVTGALCYRVLCL 292
            N  S+SG SK DQE G+++     +++  RN++F C  P +I+P L R + AE +G+FIL+FC+CGI+A TQ+M G+VGLLEYA TA LTV+VV+FSIG ISGAH+NPAVT+AFA  G FPWS+VPLY LAQ +GSV A +IG+L+YGIK +L+ TRP+Q   SAF+VELI TF+I+F+  ++ ++AQ VG L+G V G+AIGL VLITGP+SG SMNPARSL PAI+SW F DIWIYI  PT+GAV GAL Y++L L
Sbjct:   51 NCTSTSGHSKDDQEMGSNAMSNGGNVL--RNSMFLC-FPLQINPNLVRAVLAEMVGTFILMFCVCGIIASTQLMKGEVGLLEYAATAGLTVVVVIFSIGSISGAHVNPAVTLAFATFGHFPWSRVPLYTLAQTLGSVLATYIGRLIYGIKPDLLTTRPLQSCASAFWVELIATFMIMFLAASLTHQAQAVGHLSGFVVGIAIGLAVLITGPISGGSMNPARSLGPAIVSWNFKDIWIYICGPTVGAVAGALLYQILHL 305

[Close]

BLAST of XM_017366707.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1Q3AZE6 ((MIP domain-containing protein {ECO:0000313|EMBL:GAV60913.1}))

HSP 1 Score: 323.939 bits (829), Expect = 1.640e-108
Identity = 155/260 (59.62%), Postives = 203/260 (78.08%), Query Frame = 0

Query:   31 PNLPNDASSSGESKYDQESGASSGLKNADIVSKRNAIFSCTLPFRIDPTLARIIAAEALGSFILIFCICGIVAITQIMHGQVGLLEYAVTAALTVIVVVFSIGGISGAHINPAVTIAFAASGPFPWSKVPLYILAQIVGSVAAAFIGKLVYGIKAELMMTRPMQGYVSAFFVELIVTFIILFVTCAIINEAQTVGPLAGIVAGVAIGLGVLITGPVSGASMNPARSLAPAIISWKFDDIWIYILAPTIGAVTGALCYRVL 290
            P+  N AS+SG+S+ DQE+G++    + D++ +   +  C  P+ +D   AR+  AE +G+FIL+FC+CGI+A+TQ+M G+VGLLEYA TA LTVIVV+FSIG ISGAH+NPAVTIAFA  G FPWS++P YILAQ VGSV A ++G  VYGI+ ELM+T P+QG +SAF+VE I TFI++F+  ++  EAQ+VG ++G V G++IGL VLITGPVSG S+NPARSL PAI++WKF DIWIYI APT+GAV GAL YR L
Sbjct:   12 PDNSNHASTSGQSRDDQETGSNEISNSGDVLMRNQGL--CHFPYEMDLNPARVFLAELVGTFILMFCVCGIIAVTQLMKGEVGLLEYAATAGLTVIVVIFSIGPISGAHLNPAVTIAFATFGHFPWSRLPFYILAQTVGSVVATWVGSCVYGIRLELMLTIPLQGCISAFWVEFIATFIVVFLAVSMAYEAQSVGNVSGFVVGISIGLAVLITGPVSGGSLNPARSLGPAIVTWKFKDIWIYITAPTLGAVAGALLYRFL 269

[Close]

BLAST of XM_017366707.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2LUX2 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:QL06p003947:mrna}))

HSP 1 Score: 323.168 bits (827), Expect = 2.294e-108
Identity = 162/275 (58.91%), Postives = 214/275 (77.82%), Query Frame = 0

Query:   21 KQLIDDDNTYPNLPNDASSSGESKYDQESGASSGLKNADIVSKRNAIFSCTLPFRIDPTLARIIAAEALGSFILIFCICGIVAITQIMHGQVGLLEYAVTAALTVIVVVFSIGGISGAHINPAVTIAFAASGPFPWSKVPLYILAQIVGSVAAAFIGKLVYGIKAELMMTRPMQGYVSAFFVELIVTFIILFVTCAIINEAQTVGPLAGIVAGVAIGLGVLITGPVSGASMNPARSLAPAIISWKFDDIWIYILAPTIGAVTGALCYRVLCLHCK 295
            K L+++   + N  N+AS+  +SK DQE G+S+  K+ ++ S  N+ FSC  P  +D  L R+  AE +G+FIL+F +CGI+A TQ++ G+VGLLEYA TA LTV+VV+FSIG IS AH+NPA+TIAFA+ G FPWSKVPLYI+AQI+GSV A ++G+ VYG+K E+M+TRP+QG  SAF+VELI +FII+F+  ++  +AQ+VG L+G   G+AI L VLITGPVSG SMNPARSL PAIISWKF+D+WIY+ AP IGAVTGAL +RVL L C+
Sbjct:    2 KALLEEQLPHHN-SNNASTCDQSKDDQEMGSSAMSKSGNVFS--NSGFSC-FPRGMDLNLGRVALAEMVGTFILMFSVCGIIACTQLLKGEVGLLEYAATAGLTVVVVIFSIGPISCAHVNPAITIAFASFGHFPWSKVPLYIIAQILGSVLATYVGQSVYGLKPEIMITRPLQGCNSAFWVELIASFIIMFLAASLTYQAQSVGHLSGFAVGIAIALAVLITGPVSGGSMNPARSLGPAIISWKFNDLWIYVTAPVIGAVTGALLFRVLRLQCQ 272

[Close]

BLAST of XM_017366707.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A4NI69 ((Putative major intrinsic protein {ECO:0000313|EMBL:KAE9589172.1}))

HSP 1 Score: 323.168 bits (827), Expect = 3.273e-108
Identity = 168/297 (56.57%), Postives = 219/297 (73.74%), Query Frame = 0

Query:   18 LMTKQLIDDDNTYPNLPNDASSSGESKYDQESGASSGLKNADIVSKRNAIFSCTLPFRIDPTLARIIAAEALGSFILIFCICGIVAITQIMHGQVGLLEYAVTAALTVIVVVFSIGGISGAHINPAVTIAFAASGPFPWSKVPLYILAQIVGSVAAAFIGKLVYGIKAELMMTRPMQGYVSAFFVELIVTFIILFVTCAIINEAQTVGPLAGIVAGVAIGLGVLITGPVSGASMNPARSLAPAIISWKFDDIWIYILAPTIGAVTGALCYRVLCLHCKVNYRIAASPAPTLPT-NVT 313
            +MT     +  T  ++ N ASSSG S  D+E G  +   N   +S +N+IF   LPF+ID   AR++ AE +G+FIL+FC+CGI+A TQ+ +G VGLLEYAVTA LTV+V++FSIG IS AH+NPAVTIAFA  G FPW KVP+YI+AQ +GSV A +IG LVYGIK+E++MT+P+QG  SAF+VE+I TFII+F+  A+ +E+Q+VG L+G VAG+AIGL VLITGPVSG SMNPARSL PAI+S K+ DIWIYI+AP++GAV GA  +R L        R+   P  TL + N+T
Sbjct:    1 MMTDMF--EKQTSSDVSNYASSSGLSGDDKEIGYEAATFNHQYLSAKNSIFH-FLPFKIDLNFARMVIAEVMGTFILMFCVCGIIATTQLQNGAVGLLEYAVTAGLTVVVIIFSIGPISCAHVNPAVTIAFATLGHFPWIKVPIYIIAQTIGSVVATYIGSLVYGIKSEIVMTQPLQGCNSAFWVEVIATFIIMFLIAALTSESQSVGHLSGFVAGMAIGLAVLITGPVSGGSMNPARSLGPAILSCKYKDIWIYIIAPSVGAVAGAFMFRFL--------RLRDQPCSTLSSPNIT 286

[Close]

BLAST of XM_017366707.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6GCH0 ((probable aquaporin NIP7-1 {ECO:0000313|RefSeq:XP_015888306.1, ECO:0000313|RefSeq:XP_024931786.1}))

HSP 1 Score: 322.783 bits (826), Expect = 5.273e-108
Identity = 162/268 (60.45%), Postives = 204/268 (76.12%), Query Frame = 0

Query:   26 DDNTYPNLPNDASSSGESKYDQESGASSGLKNADIVSKRNAIFSCTLPFRIDPTLARIIAAEALGSFILIFCICGIVAITQIMHGQVGLLEYAVTAALTVIVVVFSIGGISGAHINPAVTIAFAASGPFPWSKVPLYILAQIVGSVAAAFIGKLVYGIKAELMMTRPMQGYVSAFFVELIVTFIILFVTCAIINEAQTVGPLAGIVAGVAIGLGVLITGPVSGASMNPARSLAPAIISWKFDDIWIYILAPTIGAVTGALCYRVLCLH 293
            ++    +L N A+SSGESK DQE G+++  ++  ++  +N+ F C  P  I+P   R + AE +G+FIL+FC+CGI+A TQ+M G+VGLLEYA TA LTV+VV+FSIG ISGAH+NPAVTIAFA  G FPWS+V  YI AQI+GSV A + G LVYGIK++LM TRP+QG  SAFFVELI TFII+FV  ++  +AQ+VG L+G V G++IGL VLITGPVSG SMNPARS+ PAI+SW F  IWIYI APTIGAV GAL +R L L 
Sbjct:    6 EEQPSTDLSNYATSSGESKDDQEMGSTAMSESGSVL--KNSPFLC-FPNGIEPNFGRGVLAEMVGTFILMFCVCGIIASTQLMKGEVGLLEYASTAGLTVVVVIFSIGSISGAHVNPAVTIAFAIFGHFPWSRVAPYIFAQIMGSVMATYSGMLVYGIKSDLMTTRPLQGSTSAFFVELIATFIIMFVAASLTQQAQSVGHLSGFVVGISIGLAVLITGPVSGGSMNPARSVGPAIVSWNFKSIWIYITAPTIGAVFGALVFRFLRLR 270

[Close]

BLAST of XM_017366707.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A540LUY6 ((Uncharacterized protein {ECO:0000313|EMBL:TQD90315.1}))

HSP 1 Score: 322.013 bits (824), Expect = 1.090e-107
Identity = 155/259 (59.85%), Postives = 201/259 (77.61%), Query Frame = 0

Query:   35 NDASSSGESKYDQESGASSGLKNADIVSKRNAIFSCTLPFRIDPTLARIIAAEALGSFILIFCICGIVAITQIMHGQVGLLEYAVTAALTVIVVVFSIGGISGAHINPAVTIAFAASGPFPWSKVPLYILAQIVGSVAAAFIGKLVYGIKAELMMTRPMQGYVSAFFVELIVTFIILFVTCAIINEAQTVGPLAGIVAGVAIGLGVLITGPVSGASMNPARSLAPAIISWKFDDIWIYILAPTIGAVTGALCYRVLCLH 293
            N  S+SG SK DQE G+++     +++  RN++F C  P +I+P L R + AE +G+FIL+FC+CGI+A TQ+M G+VGLLEYA TA LTV+VV+FSIG ISGAH+NPAVT+AFA    FPWS+VPLY LAQ +GSV A +IG+L+YGIK +L+ TRP+Q   SAF+VELI TF+I+F+  ++ ++AQ VG L+G V G+AIGL VLITGP+SG SMNPARSL PAI+SW F DIWIYI  PT+GAV GAL Y++L L 
Sbjct:   18 NCTSTSGHSKDDQEMGSNAMSNGGNVL--RNSMFLC-FPLQINPNLVRAVLAEMVGTFILMFCVCGIIASTQLMKGEVGLLEYAATAGLTVVVVIFSIGSISGAHVNPAVTLAFATFDHFPWSRVPLYTLAQTLGSVLATYIGRLIYGIKPDLLTTRPLQSCASAFWVELIATFMIMFLAASLTHQAQAVGHLSGFVVGIAIGLAVLITGPISGGSMNPARSLGPAIVSWNFKDIWIYICGPTVGAVAGALLYQILHLR 273

[Close]

BLAST of XM_017366707.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438KKI9 ((Putative aquaporin NIP7-1 {ECO:0000313|EMBL:RVX21710.1}))

HSP 1 Score: 318.546 bits (815), Expect = 2.198e-106
Identity = 161/280 (57.50%), Postives = 206/280 (73.57%), Query Frame = 0

Query:   16 RILMTKQLIDDDNTYPNLPNDASSSGESKYDQESGASSGLKNADIVSKRNAIFSCTLPFRIDPTLARIIAAEALGSFILIFCICGIVAITQIMHGQVGLLEYAVTAALTVIVVVFSIGGISGAHINPAVTIAFAASGPFPWSKVPLYILAQIVGSVAAAFIGKLVYGIKAELMMTRPMQGYVSAFFVELIVTFIILFVTCAIINEAQTVGPLAGIVAGVAIGLGVLITGPVSGASMNPARSLAPAIISWKFDDIWIYILAPTIGAVTGALCYRVLCLHCK 295
            + L  KQL       P   N+ SSSG+S+ DQE G+ +  KN D V K+N+ F C+ P  +D   AR+I AE +G+FIL+FC+ GI A+TQ+M G+VGLLEYAVT  LTV+V+VFSIG ISGAH+NP+VTI FA    FPWSKVP YI AQIVGSV A ++G+ +YGIK EL+ T+P+QG  SAF+VE I TFII+F+  ++ ++ Q+V  L+G V G+AIGL VLITGPVSG SMNPARSL PAI+SWKFDDIWIY +APT+GAV G   + +L L  +
Sbjct:    2 KSLFEKQL------SPGTSNN-SSSGQSRDDQELGSHAVPKNGDHVRKKNSWFCCSPPDHMDLNPARMILAEMVGTFILVFCVYGIEAVTQLMKGEVGLLEYAVTGGLTVVVLVFSIGSISGAHVNPSVTITFATLCQFPWSKVPYYISAQIVGSVLATYVGRSIYGIKPELITTKPLQGCSSAFWVEFIATFIIMFLAVSLTSQPQSVSHLSGFVVGIAIGLAVLITGPVSGGSMNPARSLGPAIVSWKFDDIWIYTIAPTLGAVAGGHLFHLLRLRHQ 274


Match Name	Stats	Description
A0A2P6QX80	E-Value: 1.805e-109, PID: 59.85	(Putative major intrinsic protein {ECO:0000313\|EMB... [more]
A0A834H9F8	E-Value: 6.210e-109, PID: 58.04	(Uncharacterized protein {ECO:0000313\|EMBL:KAF7150... [more]
A0A2N9HNN8	E-Value: 7.985e-109, PID: 59.43	(Uncharacterized protein {ECO:0000313\|EMBL:SPD1335... [more]
A0A498HNL3	E-Value: 1.246e-108, PID: 60.47	(Uncharacterized protein {ECO:0000313\|EMBL:RXH7050... [more]
A0A1Q3AZE6	E-Value: 1.640e-108, PID: 59.62	(MIP domain-containing protein {ECO:0000313\|EMBL:G... [more]
A0A7N2LUX2	E-Value: 2.294e-108, PID: 58.91	(Uncharacterized protein {ECO:0000313\|EnsemblPlant... [more]
A0A6A4NI69	E-Value: 3.273e-108, PID: 56.57	(Putative major intrinsic protein {ECO:0000313\|EMB... [more]
A0A6P6GCH0	E-Value: 5.273e-108, PID: 60.45	(probable aquaporin NIP7-1 {ECO:0000313\|RefSeq:XP_... [more]
A0A540LUY6	E-Value: 1.090e-107, PID: 59.85	(Uncharacterized protein {ECO:0000313\|EMBL:TQD9031... [more]
A0A438KKI9	E-Value: 2.198e-106, PID: 57.50	(Putative aquaporin NIP7-1 {ECO:0000313\|EMBL:RVX21... [more]

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100	The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR	This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.