Resource Type:
Polypeptide
Name:
XM_017364636.1
Identifier:
XM_017364636.1-protein
Sequence:
MGTSWSSNNTNRRRNQNNQYPPSQLISSSTSYTSYPPDPYANPPQPYPPY
QTHQPPMYYYSGGYTAPNYQFPLMGRSNFGYQNQGWGAVRPPVAVHEPAV
FVEEQQAKKVRNDVNVHKDTIKLVVDEDDPDRYLITFIFDAMFDGSITII
YFAKEEPNCKIVPVFPESYKPVKVPFQKGAGQKFRQPSRTGIDLAFFGVD
YPSKLEEDVLPLVISAETYLPSLLADEQSSDHPPNPSPRRQITQAVLEEK
DGEPFIVRVIKQILWIDDVRYELREIYGIGNSGEAISGNDSGKECVICMT
EPKNTAVLPCRHMCLCSECAKTLRLQSNKCPICRQPIEELMEIKIDNDGQ
Sequence Length:
350
Sequence Checksum:
77744f3edaca7f148e934db9d921e5ac
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017364636.1, derives from mRNA, XM_017364636.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017364636.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
back to top
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017364636.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7B8J4 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089} (Fragment))
HSP 1 Score: 422.165 bits (1084), Expect = 9.590e-145
Identity = 240/389 (61.70%), Postives = 278/389 (71.47%), Query Frame = 0
Match: A0A5B7B8J4 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089} (Fragment))
HSP 1 Score: 422.165 bits (1084), Expect = 9.590e-145
Identity = 240/389 (61.70%), Postives = 278/389 (71.47%), Query Frame = 0
Query: 1 MGTSWSSNNTNRRRNQN---NQYPPSQLISSSTSYTSYPPDPYANPPQPYPPYQTHQPPM-------------------------YYYSGGYTAPNYQFPLMGRSNFG----YQNQGWGAVRPPVAVHEPAV----FVEEQQAKKVRNDVNVHKDTIKLVVDEDDPDRYLITFIFDAMFDGSITIIYFAKEEPNCKIVPVFPESYKPVKVPFQKGAGQKFRQPSRTGIDLAFFGVDYPSKLE--EDVLPLVISAETYLPSLLADEQSSDHPPNPSPRRQITQAVLEEKDGEPFIVRVIKQILWIDDVRYELREIYGIGN-SGEAISGNDSGKECVICMTEPKNTAVLPCRHMCLCSECAKTLRLQSNKCPICRQPIEELMEIKIDNDGQ 350
MG SWSSN RRRN N N +PPSQL+SSS+S SYP +PY P PYP + QPP YY SGGYTA NY P+MGRSNFG YQ GW +RPP V P + +V+ QQAKKVRNDVNVHKDT++L VDE +PD +L++F+FDA+ DGSIT+ YFAKEEPNCK P+FPE++ PVK+PFQKG GQKFRQPS TGIDL FF ++ SK EDV PLVISAET PSL DE SD PPN SP QITQAV+E+ + +PF VRVI+QILWID VRYELREIYGI N S E+ + NDSGK CVICMTEPK+TAVLPCRHMC+CSECAK LRLQSNKCPICRQ IEEL+EIK+++ Q
Sbjct: 36 MGISWSSN---RRRNNNYYQNPHPPSQLLSSSSSSYSYPAEPYP-APSPYPHHTQPQPPPLGPPPPPPPPPPGPPPPPPPPIYSSYYNSGGYTACNYANPIMGRSNFGPYYAYQTNGWAGIRPPPVVGPPPLPPPPYVDHQQAKKVRNDVNVHKDTLRLEVDEQNPDHHLVSFVFDAVLDGSITVFYFAKEEPNCKFAPLFPEAFMPVKIPFQKGVGQKFRQPSGTGIDLGFFTLEDLSKQSPGEDVFPLVISAETSSPSLPTDEHLSDPPPNSSPHVQITQAVMEKNNEDPFQVRVIRQILWIDGVRYELREIYGIRNSSAESFNDNDSGKVCVICMTEPKDTAVLPCRHMCMCSECAKALRLQSNKCPICRQSIEELLEIKVNSVDQ 420
BLAST of XM_017364636.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6HDL6 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})
HSP 1 Score: 393.66 bits (1010), Expect = 5.688e-134
Identity = 209/313 (66.77%), Postives = 239/313 (76.36%), Query Frame = 0
Match: F6HDL6 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})
HSP 1 Score: 393.66 bits (1010), Expect = 5.688e-134
Identity = 209/313 (66.77%), Postives = 239/313 (76.36%), Query Frame = 0
Query: 50 YQTHQPPMY----YYSGGYTAPNYQFPLMGRSNFG--YQNQG--WGAVRPPVAVHEPAV---FVEEQQAKKVRNDVNVHKDTIKLVVDEDDPDRYLITFIFDAMFDGSITIIYFAKEEPNCKIVPVFPESYKPVKVPFQKGAGQKFRQPSRTGIDLAFFGVDYPSKLE--EDVLPLVISAETYLPSLLADEQSSDHPPNPSPRRQITQAVLEEKDGEPFIVRVIKQILWIDDVRYELREIYGIGNSG-EAISGNDSGKECVICMTEPKNTAVLPCRHMCLCSECAKTLRLQSNKCPICRQPIEELMEIKIDND 348
Y H PP+Y Y SG Y + NY P+M RSN+ Y N G W +RPPVA P +VE Q AKKVRNDVNVHKDT++L VDE +PD YL++FIFDA+FDGSITI YFAKEE NC+ P+FPE+Y PV++PFQKG GQKFRQPS TGIDL FF +D SK EDV PLVISAET LP DE S D P SP QITQAVLE+ +G+PF VRVI+QILW+++VRYELREIYGI +S E + NDSGKECVICMTEPK+TAVLPCRHMC+CSECAK LRLQSNKCPICRQPIEEL+EIKIDND
Sbjct: 79 YPAHPPPIYSSSYYCSGPYNSCNYANPMMARSNYQPYYANHGNYWPPIRPPVAAPPPQQPPPYVEHQNAKKVRNDVNVHKDTLRLEVDEQNPDHYLVSFIFDALFDGSITIYYFAKEESNCRFSPLFPEAYMPVRIPFQKGPGQKFRQPSGTGIDLGFFELDDLSKPSPGEDVFPLVISAETSLPLHPTDEHSGDPTPRTSPHMQITQAVLEKHNGDPFQVRVIRQILWVNEVRYELREIYGIASSASEGFNDNDSGKECVICMTEPKDTAVLPCRHMCMCSECAKELRLQSNKCPICRQPIEELIEIKIDND 391
BLAST of XM_017364636.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RV61 ((E3 ubiquitin-protein like {ECO:0000313|EMBL:PSS33898.1}))
HSP 1 Score: 391.734 bits (1005), Expect = 1.892e-133
Identity = 227/374 (60.70%), Postives = 264/374 (70.59%), Query Frame = 0
Match: A0A2R6RV61 ((E3 ubiquitin-protein like {ECO:0000313|EMBL:PSS33898.1}))
HSP 1 Score: 391.734 bits (1005), Expect = 1.892e-133
Identity = 227/374 (60.70%), Postives = 264/374 (70.59%), Query Frame = 0
Query: 1 MGTSWSSNNTNRRRN-----QNNQYPPSQLISSSTSYTSY----PPDPYANPPQPYPPYQTHQPPMYYYSGGYTAPNYQFPLMGRSNFG----YQNQGWGAVRPPVAVHEPAV------FVEEQQAKKVRNDVNVHKDTIKLVVDEDDPDRYLITFIFDAMFDGSITIIYFAKEEPNCKIVPVFPESYKPVKVPFQKGAGQKFRQPSRTGIDLAFFGVDYPSK--LEEDVLPLVISAETYLPSLLADEQSSD--HPPNPSPRRQITQAVLEEKDGEPFIVRVIKQILWIDDVRYELREIYGIGN-SGEAISGNDSGKECVICMTEPKNTAVLPCRHMCLCSECAKTLRLQSNKCPICRQPIEELMEIKIDNDGQ 350
MG SWSSNN NRRR QN +PPSQLI+SS+S P + P PP PP+YYYSGGY A NY + GR NF YQN GW +RPP P +V QQAKKVRNDVNVHKDT++L VDE +PD +L++F+FDA+FDGS TI+YFAKEEPNC+ VP+FPE Y P KVPFQKG GQKF QPS TGIDL FF +D S+ EDV PLVISAET+ PS+ A+EQ D + SP QITQAV+++ + F +RVI+QILWID+VRYELREIYGIGN S E+ +D GKECVICMTEPK+TAVLPCRHMC+CSECAK LRLQSNKCPICRQP EEL+EIKID Q
Sbjct: 1 MGISWSSNNNNRRRRNNNYLQNPHHPPSQLIASSSSSYPSEPYPAPSSFPYPAHRPPPPPPPPPPIYYYSGGYNACNYPNHMAGRGNFAPYGPYQNNGWALIRPPQPQPLPQPQQPPPPYVHHQQAKKVRNDVNVHKDTLRLEVDEQNPDHHLVSFVFDALFDGSFTILYFAKEEPNCRFVPLFPEEYIPAKVPFQKGIGQKFCQPSGTGIDLGFFELDELSRPSSGEDVFPLVISAETFSPSVTAEEQLGDPPPSSSSSPHMQITQAVIQKNNDNTFQMRVIRQILWIDEVRYELREIYGIGNSSAESFKDDDPGKECVICMTEPKDTAVLPCRHMCMCSECAKALRLQSNKCPICRQPFEELIEIKIDRADQ 374
BLAST of XM_017364636.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7B7J2 ((Uncharacterized protein {ECO:0000313|EMBL:MPA64545.1}) (Fragment))
HSP 1 Score: 390.578 bits (1002), Expect = 1.415e-132
Identity = 228/388 (58.76%), Postives = 264/388 (68.04%), Query Frame = 0
Match: A0A5B7B7J2 ((Uncharacterized protein {ECO:0000313|EMBL:MPA64545.1}) (Fragment))
HSP 1 Score: 390.578 bits (1002), Expect = 1.415e-132
Identity = 228/388 (58.76%), Postives = 264/388 (68.04%), Query Frame = 0
Query: 1 MGTSWSSNNTNRRRNQN---NQYPPSQLISSSTSYTSYPPDPYANPPQPYPPYQTHQPPM-------------------------YYYSGGYTAPNYQFPLMGRSNFG----YQNQGWGAVRPPVAVHEPAV----FVEEQQAKKVRNDVNVHKDTIKLVVDEDDPDRYLITFIFDAMFDGSITIIYFAKEEPNCKIVPVFPESYKPVKVPFQKGAGQKFRQPSRTGIDLAFFGVDYPSKLE--EDVLPLVISAETYLPSLLADEQSSDHPPNPSPRRQITQAVLEEKDGEPFIVRVIKQILWIDDVRYELREIYGIGNSGEAISGNDSGKECVICMTEPKNTAVLPCRHMCLCSECAKTLRLQSNKCPICRQPIEELMEIKIDNDGQ 350
MG SWSSN RRRN N N +PPSQL+SSS+S SYP +PY P PYP + QPP YY SGGYTA NY P+MGRSNFG YQ GW +RPP V P + +V+ QQAKKVRNDVNVHKDT++L VDE +PD +L++F+FDA+ DGSIT+ YFAKEEPNCK P+FPE++ PVK+PFQKG GQKFRQPS TGIDL FF ++ SK EDV PLVISAET PSL DE SD PPN SP QITQAV+E+ + +PF VRVI+QILWID VRYELREIYGI NS EPK+TAVLPCRHMC+CSECAK LRLQSNKCPICRQ IEEL+EIK+++ Q
Sbjct: 31 MGISWSSN---RRRNNNYYQNPHPPSQLLSSSSSSYSYPAEPYP-APSPYPHHTQPQPPPLGPPPPPPPPPPGPPPPPPPPIYSSYYNSGGYTACNYANPIMGRSNFGPYYAYQTNGWAGIRPPPVVGPPPLPPPPYVDHQQAKKVRNDVNVHKDTLRLEVDEQNPDHHLVSFVFDAVLDGSITVFYFAKEEPNCKFAPLFPEAFMPVKIPFQKGVGQKFRQPSGTGIDLGFFTLEDLSKQSPGEDVFPLVISAETSSPSLPTDEHLSDPPPNSSPHVQITQAVMEKNNEDPFQVRVIRQILWIDGVRYELREIYGIRNSSAE--------------XEPKDTAVLPCRHMCMCSECAKALRLQSNKCPICRQSIEELLEIKVNSVDQ 400
BLAST of XM_017364636.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A1VUB6 ((Putative E3 ubiquitin-protein ligase LUL3 {ECO:0000313|EMBL:KAB1214250.1}))
HSP 1 Score: 389.037 bits (998), Expect = 2.314e-132
Identity = 194/301 (64.45%), Postives = 230/301 (76.41%), Query Frame = 0
Match: A0A6A1VUB6 ((Putative E3 ubiquitin-protein ligase LUL3 {ECO:0000313|EMBL:KAB1214250.1}))
HSP 1 Score: 389.037 bits (998), Expect = 2.314e-132
Identity = 194/301 (64.45%), Postives = 230/301 (76.41%), Query Frame = 0
Query: 58 YYYSGGYTAPNYQFPLMGRSNF----GYQNQGWGAVRPPVA-VHEPAVFVEEQQAKKVRNDVNVHKDTIKLVVDEDDPDRYLITFIFDAMFDGSITIIYFAKEEPNCKIVPVFPESYKPVKVPFQKGAGQKFRQPSRTGIDLAFFGVDYPSKLE--EDVLPLVISAETYLPSLLADEQSSDHPPNPSPRRQITQAVLEEKDGEPFIVRVIKQILWIDDVRYELREIYGIGNSG-EAISGNDSGKECVICMTEPKNTAVLPCRHMCLCSECAKTLRLQSNKCPICRQPIEELMEIKIDNDGQ 350
YYY+GGY + NY P+ R N+ Q GW A R V EP +VE Q AKKVRNDVNVHKDT++LVVDE +PD L++F+FDA++DGSIT+ YFAKEE NC VP+FPE++ PVK+PFQKG GQKF QPS TGIDL FF ++ SK EDV PLVISAET P L D+ + P+ SP QITQA+LE+ EPF VRVI+QILWID+VRYELREIYGIG+S E+ + +D+GKECVICMTEPK+TAVLPCRHMCLCSECAK LRLQSNKCPICRQPIEEL+EIKI+N +
Sbjct: 78 YYYTGGYHSCNYANPMTARFNYHPYHSNQANGWPAARSAVGPAVEPPRYVEHQNAKKVRNDVNVHKDTLRLVVDEHNPDHLLVSFVFDALYDGSITVFYFAKEESNCSFVPLFPEAFMPVKIPFQKGLGQKFCQPSGTGIDLGFFELEDLSKPSPAEDVFPLVISAETCEPPLSTDKNLCETAPSTSPHMQITQAILEKNGDEPFQVRVIRQILWIDEVRYELREIYGIGSSDTESFNDDDAGKECVICMTEPKDTAVLPCRHMCLCSECAKALRLQSNKCPICRQPIEELIEIKINNSDE 378
BLAST of XM_017364636.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5C051 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8548589.1}))
HSP 1 Score: 399.053 bits (1024), Expect = 2.553e-130
Identity = 202/301 (67.11%), Postives = 234/301 (77.74%), Query Frame = 0
Match: A0A5J5C051 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8548589.1}))
HSP 1 Score: 399.053 bits (1024), Expect = 2.553e-130
Identity = 202/301 (67.11%), Postives = 234/301 (77.74%), Query Frame = 0
Query: 58 YYYSGGYTAPNYQFPLMGRSNFG----YQNQGWGAVRPPVAVHEPAV-------FVEEQQAKKVRNDVNVHKDTIKLVVDEDDPDRYLITFIFDAMFDGSITIIYFAKEEPNCKIVPVFPESYKPVKVPFQKGAGQKFRQPSRTGIDLAFFGVDYPSK--LEEDVLPLVISAETYLPSLLADEQSSDHPPNPSPRRQITQAVLEEKDGEPFIVRVIKQILWIDDVRYELREIYGIGN-SGEAISGNDSGKECVICMTEPKNTAVLPCRHMCLCSECAKTLRLQSNKCPICRQPIEELMEIK 344
YY SGGY+A NY P+MGRSNFG YQN GW +RPP V P + +V+ QQAKKVRNDVNVHKDT++L VDE +PD YL++F+FDA+ DGSIT+ YFAKEE CK P+FPE++ PVK+PFQKG GQKFRQPS TGIDL FF ++ SK EDV PLVISAET P L DE S+ PPN SP QITQAV+E+ + +PF VRVI+QILWID VRYELREIYGI N S E+ + NDSGKECVICMTEPK+TAVLPCRHMC+CSECAK LRLQSNKCPICRQ I+EL+EIK
Sbjct: 83 YYNSGGYSACNYANPIMGRSNFGPHYAYQNNGWAGIRPPPVVGPPPLPPLPPPPYVDHQQAKKVRNDVNVHKDTLRLEVDEQNPDHYLVSFVFDALLDGSITVFYFAKEESTCKFAPLFPEAFMPVKIPFQKGLGQKFRQPSGTGIDLGFFTLEDLSKQSTGEDVFPLVISAETGSP-LPTDEHLSNPPPNASPHMQITQAVIEKNNEDPFQVRVIRQILWIDGVRYELREIYGIRNSSAESFNDNDSGKECVICMTEPKDTAVLPCRHMCMCSECAKALRLQSNKCPICRQSIDELLEIK 382
BLAST of XM_017364636.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J1AUP8 ((probable E3 ubiquitin-protein ligase LUL4 {ECO:0000313|RefSeq:XP_021290159.1, ECO:0000313|RefSeq:XP_021290161.1}))
HSP 1 Score: 383.259 bits (983), Expect = 4.738e-130
Identity = 212/377 (56.23%), Postives = 255/377 (67.64%), Query Frame = 0
Match: A0A6J1AUP8 ((probable E3 ubiquitin-protein ligase LUL4 {ECO:0000313|RefSeq:XP_021290159.1, ECO:0000313|RefSeq:XP_021290161.1}))
HSP 1 Score: 383.259 bits (983), Expect = 4.738e-130
Identity = 212/377 (56.23%), Postives = 255/377 (67.64%), Query Frame = 0
Query: 1 MGTSWSS-NNTNRRRNQNNQYPPSQLI--------SSSTSYTSYPPDPYANPPQPYPPYQTHQPPM-------YYYSGGYTAPNYQFPLMGRSNFGY------QNQGWGAVRPPVAVHEPAV---FVEEQQAKKVRNDVNVHKDTIKLVVDEDDPDRYLITFIFDAMFDGSITIIYFAKEEPNCKIVPVFPESYKPVKVPFQKGAGQKFRQPSRTGIDLAFFGVDYPSKLE--EDVLPLVISAETYLPSLLADEQSSDHPPNPSPRRQITQAVLEEKDGEPFIVRVIKQILWIDDVRYELREIYGIGNSGEAISGNDS--GKECVICMTEPKNTAVLPCRHMCLCSECAKTLRLQSNKCPICRQPIEELMEIKIDND 348
MG SWSS +N+NRRRNQN + P + PY P P PY TH PP YY S Y + Y P+MGR Y Q GW A+R P P +VE + AKKVRNDVNVHKDT+K+ VD+ +PD +L++F+FDA+FDGSITI YFAKEE NCK VP+FPE+Y+PV+VPFQKG GQ+F+QPS TGIDL F+ +D SK EDV P+VISAET +P ++E D N S QITQAVLE+ +G F V+VI+QILW+D VRYELREIYGIG+S A +DS GKECVICMTEPK+TAVLPCRHMC+CSECAK LRLQSNKCPICRQPIEEL+EIKI+++
Sbjct: 1 MGISWSSASNSNRRRNQNYLHAPPPPPPXXXXXXXAPPPPPPPSTSHPY--PVHPQNPYHTHPPPPPPPIHSNYYCSQPYNSCGYSNPMMGRFPVHYHPYYANQTNGWPAIRSPAVAAPPQPPPPYVEHRNAKKVRNDVNVHKDTLKIEVDDQNPDHHLVSFVFDALFDGSITIFYFAKEETNCKFVPLFPEAYEPVRVPFQKGLGQRFQQPSGTGIDLGFYELDDLSKPSPGEDVFPVVISAETCVPPHSSNEHIDDSAQNTSAHMQITQAVLEKNNGNTFQVKVIRQILWVDGVRYELREIYGIGSSAAAEGFDDSDPGKECVICMTEPKDTAVLPCRHMCMCSECAKALRLQSNKCPICRQPIEELIEIKINSN 375
BLAST of XM_017364636.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J1CBY6 ((probable E3 ubiquitin-protein ligase LUL4 {ECO:0000313|RefSeq:XP_022138033.1}))
HSP 1 Score: 382.874 bits (982), Expect = 6.852e-130
Identity = 193/304 (63.49%), Postives = 232/304 (76.32%), Query Frame = 0
Match: A0A6J1CBY6 ((probable E3 ubiquitin-protein ligase LUL4 {ECO:0000313|RefSeq:XP_022138033.1}))
HSP 1 Score: 382.874 bits (982), Expect = 6.852e-130
Identity = 193/304 (63.49%), Postives = 232/304 (76.32%), Query Frame = 0
Query: 58 YYYSGGYTAPNYQFPLMGRSNFG--YQNQ--GWGAVRPPVAVHEPAV----FVEEQQAKKVRNDVNVHKDTIKLVVDEDDPDRYLITFIFDAMFDGSITIIYFAKEEPNCKIVPVFPESYKPVKVPFQKGAGQKFRQPSRTGIDLAFFGVDYPSKLE--EDVLPLVISAETYLPSLLADEQSSDHPPNPSPRRQITQAVLEEKDGEPFIVRVIKQILWIDDVRYELREIYGIG-NSGEAISGNDSGKECVICMTEPKNTAVLPCRHMCLCSECAKTLRLQSNKCPICRQPIEELMEIKIDNDGQ 350
YY+SGGY + NY MGR NF Y NQ GW +RP + FVE +QAKKVRNDVNVHKDT+++ VDE +PDR+L++F+FDA++DGSITI++FAKEE NC+ VPV+PE++KPV++PFQKG QKF QP TG DL FF +D SK ED+ PLVISAET PS DE+ + P+ S QITQAVLE+K+G PF VRVI+Q+LWID VRYELREI+GIG +S E ND+GKECVICMTEPK+TAVLPCRHMC+CSECAK LRLQSNKCPICRQPIEEL+EIKI+N Q
Sbjct: 72 YYFSGGYNSCNYAASTMGRFNFHPYYANQSNGWSQIRPAMGPPLLPPPPLPFVEHRQAKKVRNDVNVHKDTLRIEVDEQNPDRHLVSFVFDALYDGSITILFFAKEELNCRFVPVYPEAFKPVRIPFQKGPAQKFFQPVGTGFDLGFFELDDLSKPSPAEDIFPLVISAETCSPSQSNDERIGEPQPDNS-HMQITQAVLEKKNGGPFQVRVIRQLLWIDGVRYELREIFGIGSSSAEGFDDNDTGKECVICMTEPKDTAVLPCRHMCMCSECAKELRLQSNKCPICRQPIEELIEIKINNSDQ 374
BLAST of XM_017364636.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J1F9I4 ((probable E3 ubiquitin-protein ligase LUL4 {ECO:0000313|RefSeq:XP_022936869.1}))
HSP 1 Score: 382.489 bits (981), Expect = 9.310e-130
Identity = 216/382 (56.54%), Postives = 261/382 (68.32%), Query Frame = 0
Match: A0A6J1F9I4 ((probable E3 ubiquitin-protein ligase LUL4 {ECO:0000313|RefSeq:XP_022936869.1}))
HSP 1 Score: 382.489 bits (981), Expect = 9.310e-130
Identity = 216/382 (56.54%), Postives = 261/382 (68.32%), Query Frame = 0
Query: 1 MGTSWSSNNTNRRRNQNNQYPPSQLISSSTSYTSYPPDPYANPPQPYPPYQT-HQPPM--------------------YYYSGGYTAPNYQFPLMGRSNFG--YQNQ--GWGAVRPPVAVHEPAVF----VEEQQAKKVRNDVNVHKDTIKLVVDEDDPDRYLITFIFDAMFDGSITIIYFAKEEPNCKIVPVFPESYKPVKVPFQKGAGQKFRQPSRTGIDLAFFGVDYPSK--LEEDVLPLVISAETYLPSLLADEQSSDHPPNPSPRRQITQAVLEEKDGEPFIVRVIKQILWIDDVRYELREIYGIG-NSGEAISGNDSGKECVICMTEPKNTAVLPCRHMCLCSECAKTLRLQSNKCPICRQPIEELMEIKIDNDGQ 350
MG SWS NRRRN Q PP SSS+ Y YP +P + PP P + T H P YY+SGGY + NY MGR NF Y NQ GW RP + VE +QAKKVRNDVNVHKDT+++ VDE +PD++L++F+FDA++DGSITI++FAKEEPNC+ VP++P+++KPVK+PFQKG QKF QP TG DL FF +D SK EDV PLVISAET PS DE+ + P+ S QITQAVLE+K+G PF V+VI+Q+LWID +RYELREI+GIG +S E NDSGKECVICMTEPK+TAVLPCRHMC+CSECAK L+LQSNKCPICRQPIEEL+EIKI+N Q
Sbjct: 1 MGISWS----NRRRNNYLQNPPPPYHSSSSFY--YPSEPTSLPPPPQTHHFTNHSHPYTPTPQPIPLPPIPPAPAPHSYYFSGGYNSCNYGNSSMGRFNFHPHYANQSNGWSQFRPVMVPPFLPPPSLPFVEHRQAKKVRNDVNVHKDTLRIEVDEQNPDQHLVSFVFDALYDGSITILFFAKEEPNCRFVPIYPDAFKPVKIPFQKGPAQKFFQPVGTGFDLGFFELDDLSKPSPSEDVFPLVISAETCSPSQSNDERIGEPQPDNS-HMQITQAVLEKKNGNPFQVKVIRQLLWIDRMRYELREIFGIGSSSSEGFDNNDSGKECVICMTEPKDTAVLPCRHMCMCSECAKELKLQSNKCPICRQPIEELIEIKINNSNQ 375
BLAST of XM_017364636.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7B6I8 ((Uncharacterized protein {ECO:0000313|EMBL:MPA64547.1}) (Fragment))
HSP 1 Score: 381.719 bits (979), Expect = 5.907e-129
Identity = 225/388 (57.99%), Postives = 260/388 (67.01%), Query Frame = 0
Match: A0A5B7B6I8 ((Uncharacterized protein {ECO:0000313|EMBL:MPA64547.1}) (Fragment))
HSP 1 Score: 381.719 bits (979), Expect = 5.907e-129
Identity = 225/388 (57.99%), Postives = 260/388 (67.01%), Query Frame = 0
Query: 1 MGTSWSSNNTNRRRNQN---NQYPPSQLISSSTSYTSYPPDPYANPPQPYPPYQTHQPPM-------------------------YYYSGGYTAPNYQFPLMGRSNFG----YQNQGWGAVRPPVAVHEPAV----FVEEQQAKKVRNDVNVHKDTIKLVVDEDDPDRYLITFIFDAMFDGSITIIYFAKEEPNCKIVPVFPESYKPVKVPFQKGAGQKFRQPSRTGIDLAFFGVDYPSKLE--EDVLPLVISAETYLPSLLADEQSSDHPPNPSPRRQITQAVLEEKDGEPFIVRVIKQILWIDDVRYELREIYGIGNSGEAISGNDSGKECVICMTEPKNTAVLPCRHMCLCSECAKTLRLQSNKCPICRQPIEELMEIKIDNDGQ 350
MG SWSSN RRRN N N +PPSQL+SSS+S SYP +PY P PYP + QPP YY SGGYTA NY P+MGRSNFG YQ GW +RPP V P + +V+ QQAKKVRNDVNVHKDT++L VDE +PD +L++F+FDA+ DGSIT+ YFAKEEPNCK P+FPE++ PVK+PFQKG GQKFRQPS TGIDL FF ++ SK EDV PLVISAET PSL DE SD PPN SP QITQAV+E+ + +PF VRVI+QILWID VRYELREIYGI NS TAVLPCRHMC+CSECAK LRLQSNKCPICRQ IEEL+EIK+++ Q
Sbjct: 48 MGISWSSN---RRRNNNYYQNPHPPSQLLSSSSSSYSYPAEPYP-APSPYPHHTQPQPPPLGPPPPPPPPPPGPPPPPPPPIYSSYYNSGGYTACNYANPIMGRSNFGPYYAYQTNGWAGIRPPPVVGPPPLPPPPYVDHQQAKKVRNDVNVHKDTLRLEVDEQNPDHHLVSFVFDAVLDGSITVFYFAKEEPNCKFAPLFPEAFMPVKIPFQKGVGQKFRQPSGTGIDLGFFTLEDLSKQSPGEDVFPLVISAETSSPSLPTDEHLSDPPPNSSPHVQITQAVMEKNNEDPFQVRVIRQILWIDGVRYELREIYGIRNSSAX-------------------TAVLPCRHMCMCSECAKALRLQSNKCPICRQSIEELLEIKVNSVDQ 412
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7B8J4 | E-Value: 9.590e-145, PID: 61.70 | RING-type domain-containing protein {ECO:0000259|P... [more] |
| F6HDL6 | E-Value: 5.688e-134, PID: 66.77 | RING-type domain-containing protein {ECO:0000259|P... [more] |
| A0A2R6RV61 | E-Value: 1.892e-133, PID: 60.70 | (E3 ubiquitin-protein like {ECO:0000313|EMBL:PSS33... [more] |
| A0A5B7B7J2 | E-Value: 1.415e-132, PID: 58.76 | (Uncharacterized protein {ECO:0000313|EMBL:MPA6454... [more] |
| A0A6A1VUB6 | E-Value: 2.314e-132, PID: 64.45 | (Putative E3 ubiquitin-protein ligase LUL3 {ECO:00... [more] |
| A0A5J5C051 | E-Value: 2.553e-130, PID: 67.11 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8548... [more] |
| A0A6J1AUP8 | E-Value: 4.738e-130, PID: 56.23 | (probable E3 ubiquitin-protein ligase LUL4 {ECO:00... [more] |
| A0A6J1CBY6 | E-Value: 6.852e-130, PID: 63.49 | (probable E3 ubiquitin-protein ligase LUL4 {ECO:00... [more] |
| A0A6J1F9I4 | E-Value: 9.310e-130, PID: 56.54 | (probable E3 ubiquitin-protein ligase LUL4 {ECO:00... [more] |
| A0A5B7B6I8 | E-Value: 5.907e-129, PID: 57.99 | (Uncharacterized protein {ECO:0000313|EMBL:MPA6454... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |