XM_017364609.1 | CarrotOmics

Resource Type:

Polypeptide

Name:

XM_017364609.1

Identifier:

XM_017364609.1-protein

Sequence:

MISSWRKIRASRHANKRIGLDDISNMEVSIPTHFRCPISLDLMKDPVTLS
SGITYDRQSIETWIEAGNNTCPITKQELSTLEPIPNHTIRKMIQDWCVVN
SSYGIERIPTPRIPVTSRQVTEMLARVVAMSRSEEASACREVVAKVKRLV
KENERNKRCFMANGTVGALASAFEAFSKVSFDKNVAVLEEILSCLSLMTP
LDGEAKSYLGSNSSLSSMVWFLKRGHLSAQANSVLVLKHVLSTDQKKMEQ
FCSIEGALEALVKVIKEPVSPTTTKASLLIVYYMVSISSSRVDEKIIRRF
IDMGLIERLLEMLVDCDKSICEKALGVLDGLCLDSQGREKAYADALTMPV
LVKKILRVSDLATEFSVSIVWKLSKNETREDGGVIVEALQVGAFQKLLLL
LQFGCNENIKDKATELLKLLNLHREKLECIDSMDFKNLKRH

Sequence Length:

441

Sequence Checksum:

732a322a738c6ca52f286bf32253ad87

View location in JBrowse:

DCARv2_Chr8:28465092..28466417+

Organism:

Daucus carota subspecies sativus

Relationship:

There is 1 relationship.
Relationships
The polypeptide, XM_017364609.1, derives from mRNA, XM_017364609.1.

Blast Results:

The following BLAST results are available for this feature:

BLAST of XM_017364609.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR

BLAST of XM_017364609.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10

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BLAST of XM_017364609.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: Q93VZ1 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))

HSP 1 Score: 792.341 bits (2045), Expect = 0.000e+0
Identity = 392/441 (88.89%), Postives = 416/441 (94.33%), Query Frame = 0

Query:    1 MISSWRKIRASRHANKRIGLDDISNMEVSIPTHFRCPISLDLMKDPVTLSSGITYDRQSIETWIEAGNNTCPITKQELSTLEPIPNHTIRKMIQDWCVVNSSYGIERIPTPRIPVTSRQVTEMLARVVAMSRSEEASACREVVAKVKRLVKENERNKRCFMANGTVGALASAFEAFSKVSFDKNVAVLEEILSCLSLMTPLDGEAKSYLGSNSSLSSMVWFLKRGHLSAQANSVLVLKHVLSTDQKKMEQFCSIEGALEALVKVIKEPVSPTTTKASLLIVYYMVSI-SSSRVDEKIIRRFIDMGLIERLLEMLVDCDKSICEKALGVLDGLCLDSQGREKAYADALTMPVLVKKILRVSDLATEFSVSIVWKLSKNETREDGGVIVEALQVGAFQKLLLLLQFGCNENIKDKATELLKLLNLHREKLECIDSMDFKNLKR 440
            MISSW+KIRASRHANKR GLDD+SNMEVSIP HFRCPISLDLMKDPVTLS+GITYDR SIETWIEAGN TCPITKQ LSTLEPIPNHTIRKMIQDWCV NSSYGIERIPTPRIPV+S QVTEML++VVA  R EEASAC+E+V K+KRLVKENERNKRCF+ANGTVG LAS FEAFSK+SFDKNVAVLEEILSCLSLMTPLDGEAK++LGSNSSL+ MVWFLK G LSA+ANSVLVLKHVLSTDQKKME+F  IEG+LEALVKVIKEPVSPTTTKASLLIVYYMVS  SSSRVD+KII RFIDMGLIERLLEMLVDCDKSICEKALGVLDGLCL ++GREKAYA+ALTMPVLVKKILRVSDLATEFSVSIVWKLSKN+  EDGGVIVEAL+VGAFQKLLLLLQFGCNE IKDKATELLKLLNLHR+KLECIDSMDFKNLKR
Sbjct:    1 MISSWKKIRASRHANKRNGLDDLSNMEVSIPNHFRCPISLDLMKDPVTLSTGITYDRHSIETWIEAGNKTCPITKQMLSTLEPIPNHTIRKMIQDWCVDNSSYGIERIPTPRIPVSSHQVTEMLSKVVAACRREEASACQELVGKIKRLVKENERNKRCFVANGTVGVLASTFEAFSKLSFDKNVAVLEEILSCLSLMTPLDGEAKAFLGSNSSLNCMVWFLKSGDLSARANSVLVLKHVLSTDQKKMEEFSMIEGSLEALVKVIKEPVSPTTTKASLLIVYYMVSTSSSSRVDDKIIARFIDMGLIERLLEMLVDCDKSICEKALGVLDGLCLTNEGREKAYANALTMPVLVKKILRVSDLATEFSVSIVWKLSKNDKSEDGGVIVEALRVGAFQKLLLLLQFGCNEKIKDKATELLKLLNLHRDKLECIDSMDFKNLKR 441

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BLAST of XM_017364609.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6L5B8K6 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))

HSP 1 Score: 700.664 bits (1807), Expect = 0.000e+0
Identity = 353/442 (79.86%), Postives = 392/442 (88.69%), Query Frame = 0

Query:    1 MISSWRKIRASRHANKRIGLDDISNMEVSIPTHFRCPISLDLMKDPVTLSSGITYDRQSIETWIEAGNNTCPITKQELSTLEPIPNHTIRKMIQDWCVVNSSYGIERIPTPRIPVTSRQVTEMLARVVAMSRSEEASACREVVAKVKRLVKENERNKRCFMANGTVGALASAFEAFSKVSFDKNVAVLEEILSCLSLMTPLDGEAKSYLGSNSSLSSMVWFLKRGHLSAQANSVLVLKHVLSTDQKKMEQFCSIEGALEALVKVIKEPVSPTTTKASLLIVYYM-VSISSSRVDEKIIRRFIDMGLIERLLEMLVDCDKSICEKALGVLDGLCLDSQGREKAYADALTMPVLVKKILRVSDLATEFSVSIVWKLSKNETREDGGVIVEALQVGAFQKLLLLLQFGCNENIKDKATELLKLLNLHREKL-ECIDSMDFKNLKR 440
            MISSWRK RA+R   KR GLDD+SN+E+SIP HFRCPISLDLMKDPVTLS+GITYDR SIETWIEAGN TCPITKQ L+TLE  PNHT+RKMIQDWCV N SYGIERIPTPRIP+ S QVTEML+++VA  R +EASAC+E+VA++KRL KE+ERNKRC +ANGTVG LAS FE FSK  F+KNVAVLEEIL  LS+MTPLDGEAKS+LGS +SL+ MVWFL  G LS + N +LVLKHVLSTDQKKME+   IEG+LEALVK+IKEPVSPTTTKASL+I+YYM  + SSSRV EKI+ RF DMGLIERLLEML+DC+KSICEKALGVLDGLCL  QGREKAYA+ALTMPVLVKKILRVSDLATEFSVSIVWKL KNE REDGGVIVEALQVGAFQKLLLLLQFGC++ IKDKATELLK+LNLHR+KL ECIDSMDFKNLKR
Sbjct:    1 MISSWRKKRATRQT-KRDGLDDLSNVEISIPRHFRCPISLDLMKDPVTLSTGITYDRHSIETWIEAGNQTCPITKQVLTTLESTPNHTLRKMIQDWCVDNRSYGIERIPTPRIPLNSHQVTEMLSKIVAACRRDEASACQELVARIKRLAKESERNKRCLVANGTVGVLASLFETFSKSPFEKNVAVLEEILLVLSMMTPLDGEAKSFLGSTTSLNCMVWFLNSGDLSVRTNCILVLKHVLSTDQKKMEELSKIEGSLEALVKLIKEPVSPTTTKASLIIIYYMVSTSSSSRVVEKIVTRFTDMGLIERLLEMLMDCEKSICEKALGVLDGLCLYKQGREKAYANALTMPVLVKKILRVSDLATEFSVSIVWKLCKNEKREDGGVIVEALQVGAFQKLLLLLQFGCSDRIKDKATELLKMLNLHRDKLEECIDSMDFKNLKR 441

[Close]

BLAST of XM_017364609.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BSG5 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))

HSP 1 Score: 594.349 bits (1531), Expect = 0.000e+0
Identity = 297/441 (67.35%), Postives = 362/441 (82.09%), Query Frame = 0

Query:    1 MISSWRKIRASRHANKRIGLDDISNMEVSIPTHFRCPISLDLMKDPVTLSSGITYDRQSIETWIEAGNNTCPITKQELSTLEPIPNHTIRKMIQDWCVVNSSYGIERIPTPRIPVTSRQVTEMLARVVAMSRSEEASACREVVAKVKRLVKENERNKRCFMANGTVGALASAFEAFSKVSF-DKNVAVLEEILSCLSLMTPLDGEAKSYLGSNSSLSSMVWFLKRGHLSAQANSVLVLKHVLSTDQKKMEQFCSIEGALEALVKVIKEPVSPTTTKASLLIVYYMVSISSSRVDEKIIRRFIDMGLIERLLEMLVDCDKSICEKALGVLDGLCLDSQGREKAYADALTMPVLVKKILRVSDLATEFSVSIVWKLSKNETREDGGVIVEALQVGAFQKLLLLLQFGCNENIKDKATELLKLLNLHREKLECIDSMDFKNLKR 440
            MISSWR+ RA+RHA K+   D+ S +E++IP  F CPISL+LMKDPVTLS+G TYDR+SIETWIEAGN +CPITKQ L++LEPIPN  IR++IQDWCV N SYGIERIPTPR PV+S +V+EML+RV+++ + E+   CREVVAK+K LVKE+ERN+RC + NGT   L++ FEAF+K S  D+N+ VL+EILS L+LM PLD EAKS+L S  SL  MVW LK G LS + N+VL LK VLS+DQ+K++    IEGA+EALVK+IKEP+ PTTTKASL+++YYMVS +++     +  RF++MGL+  LLEMLVDC++SICEKALGVLDGLC   +GREKA   ALTMPVLVKKILRVSD+ATEFSVSI+WKLSKN   E+GGV VEALQVGAFQKLLLLLQ GC E  K+KATELLKLLNLHR++LECIDSMD+KNLKR
Sbjct:    1 MISSWRRRRAARHAGKKGDHDENSGIELTIPNDFLCPISLELMKDPVTLSTGTTYDRESIETWIEAGNRSCPITKQVLTSLEPIPNRVIREIIQDWCVQNQSYGIERIPTPRTPVSSFEVSEMLSRVISLHQREDEEGCREVVAKIKALVKESERNRRCVLRNGTGCVLSATFEAFAKASLSDENIGVLKEILSALTLMFPLDEEAKSHLSSTGSLYCMVWLLKYGDLSGRRNAVLALKEVLSSDQQKVDSLVEIEGAMEALVKLIKEPICPTTTKASLMVIYYMVSFTNN-----VRARFVEMGLVSLLLEMLVDCERSICEKALGVLDGLCGCEEGREKACLHALTMPVLVKKILRVSDMATEFSVSILWKLSKN---EEGGVPVEALQVGAFQKLLLLLQVGCGERTKEKATELLKLLNLHRDRLECIDSMDYKNLKR 433

[Close]

BLAST of XM_017364609.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438DGI6 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))

HSP 1 Score: 588.956 bits (1517), Expect = 0.000e+0
Identity = 298/442 (67.42%), Postives = 363/442 (82.13%), Query Frame = 0

Query:    1 MISSWRKIRASRHANK--RIGLDDISNMEVSIPTHFRCPISLDLMKDPVTLSSGITYDRQSIETWIEAGNNTCPITKQELSTLEPIPNHTIRKMIQDWCVVNSSYGIERIPTPRIPVTSRQVTEMLARVVAMSRSEEASACREVVAKVKRLVKENERNKRCFMANGTVGALASAFEAFSKVSFDKNVAVLEEILSCLSLMTPLDGEAKSYLGSNSSLSSMVWFLKRGHLSAQANSVLVLKHVLSTDQKKMEQFCSIEGALEALVKVIKEPVSPTTTKASLLIVYYMVSISSSRVDEKIIRRFIDMGLIERLLEMLVDCDKSICEKALGVLDGLCLDSQGREKAYADALTMPVLVKKILRVSDLATEFSVSIVWKLSKNETREDGGVIVEALQVGAFQKLLLLLQFGCNENIKDKATELLKLLNLHREKLECIDSMDFKNLKR 440
            MISSW++ RA R A K  +   DDI +ME++ P HFRCPISLDLMKDPVTLS+GITYDR+SIE WIEAGN TCPIT Q L +LEPIPNHTIRKMIQDWCV N S+GIERIPTPRIP++S +VT++L+++    R E+ + CRE+V K+K   KE+ERNKRC +ANG  G L++AFEAFS  SFDK VAVLE+IL+ L+ M+PLDGEAKSYL S +SL+ MVW LK G LSA+ N+V  LK +LS+D++K+     IEG  EALVK++KEP+ PT TK SL+++++MVS S S  D K+  RF++MGL+E LLE+LVD +KS+CEKALGVLDG+C   +GREKAY  ALTMPVLVKK+LRVSDLATEFSVSI+WKLSKNE REDG V+VEALQVGAFQKLLLLLQ GC++  K+KATELLKLLN+HRE+LECIDSMDFK+LKR
Sbjct:    1 MISSWKRRRAGRRAAKLQQHAEDDIGSMELTTPNHFRCPISLDLMKDPVTLSTGITYDRESIEMWIEAGNRTCPITNQVLRSLEPIPNHTIRKMIQDWCVENRSFGIERIPTPRIPLSSVEVTDILSKLKLAYRREDEAGCRELVTKMKSKGKESERNKRCIVANGAAGVLSAAFEAFSSASFDKYVAVLEDILAALTWMSPLDGEAKSYLSSAASLNCMVWLLKSGDLSARGNAVSTLKELLSSDKRKVYALSEIEGVKEALVKLVKEPICPTATKTSLVVIFHMVSSSPSNEDTKV--RFVEMGLVELLLELLVDSEKSVCEKALGVLDGICGCEEGREKAYGHALTMPVLVKKLLRVSDLATEFSVSILWKLSKNEKREDGSVLVEALQVGAFQKLLLLLQVGCSDRTKEKATELLKLLNIHRERLECIDSMDFKDLKR 440

[Close]

BLAST of XM_017364609.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6HFB5 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))

HSP 1 Score: 588.956 bits (1517), Expect = 0.000e+0
Identity = 300/442 (67.87%), Postives = 363/442 (82.13%), Query Frame = 0

Query:    1 MISSWRKIRASRHANK--RIGLDDISNMEVSIPTHFRCPISLDLMKDPVTLSSGITYDRQSIETWIEAGNNTCPITKQELSTLEPIPNHTIRKMIQDWCVVNSSYGIERIPTPRIPVTSRQVTEMLARVVAMSRSEEASACREVVAKVKRLVKENERNKRCFMANGTVGALASAFEAFSKVSFDKNVAVLEEILSCLSLMTPLDGEAKSYLGSNSSLSSMVWFLKRGHLSAQANSVLVLKHVLSTDQKKMEQFCSIEGALEALVKVIKEPVSPTTTKASLLIVYYMVSISSSRVDEKIIRRFIDMGLIERLLEMLVDCDKSICEKALGVLDGLCLDSQGREKAYADALTMPVLVKKILRVSDLATEFSVSIVWKLSKNETREDGGVIVEALQVGAFQKLLLLLQFGCNENIKDKATELLKLLNLHREKLECIDSMDFKNLKR 440
            MISSWR+ RA R A K  +   DDI +ME++ P HFRCPISLDLMKDPVTLS+GITYDR+SIE WIEAGN TCPIT Q L +LEPIPNHTIRKMIQDWCV N S+GIERIPTPRIP++S +VT+ML++     R E+ + CRE+VAK+K   KE+ERNKRC + NG  G L++AFEAFS  SFDK VAVLE+IL+ L+ M+PLDGEAKSYL S +SL+ +VW LK G LSA+ N+V  LK +LS+D++K+     IEGA EALVK++KEP+ PT TK SL+++++MVS S S  D K+  RF++MGL+E LLE+LVD +KS+CEKALGVLDG+C   +GREKAY  ALTMPVLVKK+LRVSDLATEFSVSI+WKLSKNE REDG V+VEALQVGAFQKLLLLLQ GC++  K+KATELLKLLN+HRE+LECIDSMDFK+LKR
Sbjct:    1 MISSWRRRRAGRRAAKLQQHAEDDIGSMELTTPNHFRCPISLDLMKDPVTLSTGITYDRESIEMWIEAGNRTCPITNQVLRSLEPIPNHTIRKMIQDWCVENRSFGIERIPTPRIPLSSVEVTDMLSKFKMAYRREDEAGCRELVAKMKSKGKESERNKRCIVINGAAGVLSAAFEAFSSASFDKYVAVLEDILAALTWMSPLDGEAKSYLSSAASLNCLVWLLKSGDLSARGNAVSTLKELLSSDKRKVYALSEIEGAKEALVKLVKEPICPTATKTSLVVIFHMVSSSPSNEDTKV--RFVEMGLVELLLELLVDSEKSVCEKALGVLDGICGCEEGREKAYGHALTMPVLVKKLLRVSDLATEFSVSILWKLSKNEKREDGSVLVEALQVGAFQKLLLLLQVGCSDRTKEKATELLKLLNIHRERLECIDSMDFKDLKR 440

[Close]

BLAST of XM_017364609.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P4BER0 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))

HSP 1 Score: 586.26 bits (1510), Expect = 0.000e+0
Identity = 294/448 (65.62%), Postives = 357/448 (79.69%), Query Frame = 0

Query:    1 MISSWRKIRASRHANKR----IGLDDISNMEVSIPTHFRCPISLDLMKDPVTLSSGITYDRQSIETWIEAGNNTCPITKQELSTLEPIPNHTIRKMIQDWCVVNSSYGIERIPTPRIPVTSRQVTEMLARVVAMSRSEEASACREVVAKVKRLVKENERNKRCFMANGTVGALASAFEAFSKV--SFDKNVAVLEEILSCLSLMTPLDGEAKSYLGSNSSLSSMVWFLKRGHLSAQANSVLVLKHVLSTDQKKMEQFCSIEGALEALVKVIKEPVSPTTTKASLLIVYYMV--SISSSRVDEKIIRRFIDMGLIERLLEMLVDCDKSICEKALGVLDGLCLDSQGREKAYADALTMPVLVKKILRVSDLATEFSVSIVWKLSKNETREDGGVIVEALQVGAFQKLLLLLQFGCNENIKDKATELLKLLNLHREKLECIDSMDFKNLKR 440
            MI SWR+ RA R A K     I  D+  +ME++IP H+RCPISLDLMKDPVTL +GITYDR+SIE WIEAGN+TCPIT Q L ++EPIPNHTIRKMIQ+WCV N SYGIERIPTPRIP++S +V+++L  +   +RS + +ACR+ +AK+K L KE+ERNKRC + NG   AL+ AFEAFSK    FDKN  VLEEILS L+L++PLDGEAKS LGS SSL  MVWFL+ G LSA+ N+VLVLK V+S+D++K+E F  IEGAL A+ K++KEP+ PT TKASL+++Y+MV  S  S     +I+ RF++MGL+  LLE+LVD +KSICEKALGVLDG+C   +GREKAY  ALTMPVLVKKILRVSDLATEFSVSI+WKL K ETRE+G  ++EALQVGAFQKLLLLLQ GC E IK+K TELLK+LN +R  LECIDSMDFK LKR
Sbjct:    1 MIFSWRR-RAFRRAGKERRGEIVGDNGCDMELTIPNHYRCPISLDLMKDPVTLPTGITYDRESIEKWIEAGNSTCPITNQVLRSIEPIPNHTIRKMIQNWCVQNQSYGIERIPTPRIPISSIEVSQILEMIAMATRSGDGAACRDSLAKIKVLAKESERNKRCIVNNGAGNALSLAFEAFSKADGGFDKNGVVLEEILSVLTLVSPLDGEAKSSLGSASSLHCMVWFLQGGDLSARGNAVLVLKEVVSSDKEKLEAFAEIEGALAAIFKLVKEPIFPTATKASLMMIYHMVRSSSPSPSSSSQIVERFVEMGLVSLLLEILVDSEKSICEKALGVLDGICSTEKGREKAYNHALTMPVLVKKILRVSDLATEFSVSILWKLCKYETREEGTAMIEALQVGAFQKLLLLLQVGCVERIKEKITELLKILNPYRNSLECIDSMDFKELKR 447

[Close]

BLAST of XM_017364609.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438HXP2 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))

HSP 1 Score: 585.104 bits (1507), Expect = 0.000e+0
Identity = 296/442 (66.97%), Postives = 362/442 (81.90%), Query Frame = 0

Query:    1 MISSWRKIRASRHANK--RIGLDDISNMEVSIPTHFRCPISLDLMKDPVTLSSGITYDRQSIETWIEAGNNTCPITKQELSTLEPIPNHTIRKMIQDWCVVNSSYGIERIPTPRIPVTSRQVTEMLARVVAMSRSEEASACREVVAKVKRLVKENERNKRCFMANGTVGALASAFEAFSKVSFDKNVAVLEEILSCLSLMTPLDGEAKSYLGSNSSLSSMVWFLKRGHLSAQANSVLVLKHVLSTDQKKMEQFCSIEGALEALVKVIKEPVSPTTTKASLLIVYYMVSISSSRVDEKIIRRFIDMGLIERLLEMLVDCDKSICEKALGVLDGLCLDSQGREKAYADALTMPVLVKKILRVSDLATEFSVSIVWKLSKNETREDGGVIVEALQVGAFQKLLLLLQFGCNENIKDKATELLKLLNLHREKLECIDSMDFKNLKR 440
            MISSW++ RA R A K  +   DDI +ME++ P HFRCPISLDLMKDPVTLS+GITYDR+SIE WIEAGN TCPIT Q L +LEPIPNHTIRKMIQDWCV N S+GIERIPTPRIP++S +VT++L+++    R E+ + CRE+V K+K   KE+ERNKRC +ANG  G L++AFEAFS  SFDK VAVLE+IL+ L+ M+PLDGEAKSYL S +SL+ +VW LK G LSA+ N+V  LK +LS+D++K+     IEG  EALVK++KEP+ PT TK SL+++++MVS S S  D K+   F++MGL+E LLE+LVD +KS+CEKALGVLDG+C   +GREKAY  ALTMPVLVKK+LRVSDLATEFSVSI+WKLSKNE REDG V+VEALQVGAFQKLLLLLQ GC++  K+KATELLKLLN+HRE+LECIDSMDFK+LKR
Sbjct:    1 MISSWKRRRAGRRAAKLQQHAEDDIGSMELTTPNHFRCPISLDLMKDPVTLSTGITYDRESIEMWIEAGNRTCPITNQVLRSLEPIPNHTIRKMIQDWCVENRSFGIERIPTPRIPLSSVEVTDILSKLKMAYRREDEAGCRELVTKMKSKGKESERNKRCIVANGAAGVLSAAFEAFSSASFDKYVAVLEDILAALTWMSPLDGEAKSYLSSAASLNCLVWLLKSGDLSARGNAVSTLKELLSSDKRKVYALSEIEGVKEALVKLVKEPICPTATKTSLVVIFHMVSSSPSNEDTKV--SFVEMGLVELLLELLVDSEKSVCEKALGVLDGICGCEEGREKAYGHALTMPVLVKKLLRVSDLATEFSVSILWKLSKNEKREDGSVLVEALQVGAFQKLLLLLQVGCSDRTKEKATELLKLLNIHRERLECIDSMDFKDLKR 440

[Close]

BLAST of XM_017364609.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0A0RAL4 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))

HSP 1 Score: 584.334 bits (1505), Expect = 0.000e+0
Identity = 297/442 (67.19%), Postives = 361/442 (81.67%), Query Frame = 0

Query:    1 MISSWRKIRASRHANK--RIGLDDISNMEVSIPTHFRCPISLDLMKDPVTLSSGITYDRQSIETWIEAGNNTCPITKQELSTLEPIPNHTIRKMIQDWCVVNSSYGIERIPTPRIPVTSRQVTEMLARVVAMSRSEEASACREVVAKVKRLVKENERNKRCFMANGTVGALASAFEAFSKVSFDKNVAVLEEILSCLSLMTPLDGEAKSYLGSNSSLSSMVWFLKRGHLSAQANSVLVLKHVLSTDQKKMEQFCSIEGALEALVKVIKEPVSPTTTKASLLIVYYMVSISSSRVDEKIIRRFIDMGLIERLLEMLVDCDKSICEKALGVLDGLCLDSQGREKAYADALTMPVLVKKILRVSDLATEFSVSIVWKLSKNETREDGGVIVEALQVGAFQKLLLLLQFGCNENIKDKATELLKLLNLHREKLECIDSMDFKNLKR 440
            MISSW++ RA R A K  +   DDI +ME++ P HFRCPISLDLMKDPVTLS+GITYDR+SIE WIEAGN TCPIT Q L +LEPIPNHTIRKMIQDWCV N S+GIERIPTPRIP++S +VT+ML++     R E+ + CRE+VAK+K   KE+ERNKRC + NG  G L++AFEAFS  SFDK VAVLE+IL+ L+ M+PLDGEAKSYL S +SL+ +VW LK G LSA+ N+V  LK +LS+D++K+     IEG  EALVK++KEP+ PT TK SL+++++MVS S S  D K+  RF++MGL+E LLE+LVD +KS+CEKALGVLDG+C   +GREKAY  ALTMPVLVKK+LRVSDLATEFSVSI+WKLSKNE REDG V+VEALQVGAFQKLLLLLQ GC++  K+KATELLKLLN+HRE+LE IDSMDFK+LKR
Sbjct:    1 MISSWKRRRAGRRAAKLQQHAEDDIGSMELTTPNHFRCPISLDLMKDPVTLSTGITYDRESIEMWIEAGNRTCPITNQVLRSLEPIPNHTIRKMIQDWCVENRSFGIERIPTPRIPLSSVEVTDMLSKFKMAYRREDEAGCRELVAKMKSKGKESERNKRCIVINGAAGVLSAAFEAFSSASFDKYVAVLEDILAALTWMSPLDGEAKSYLSSAASLNCLVWLLKSGDLSARGNAVSTLKELLSSDKRKVYALSEIEGVKEALVKLVKEPICPTATKTSLVVIFHMVSSSPSNEDTKV--RFVEMGLVELLLELLVDSEKSVCEKALGVLDGICGCEEGREKAYGHALTMPVLVKKLLRVSDLATEFSVSILWKLSKNEKREDGSVLVEALQVGAFQKLLLLLQVGCSDRTKEKATELLKLLNIHRERLEFIDSMDFKDLKR 440

[Close]

BLAST of XM_017364609.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2I4G200 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))

HSP 1 Score: 580.867 bits (1496), Expect = 0.000e+0
Identity = 293/441 (66.44%), Postives = 355/441 (80.50%), Query Frame = 0

Query:    1 MISSWRKIRASRHANKRIGLDDISNMEVSIPTHFRCPISLDLMKDPVTLSSGITYDRQSIETWIEAGNNTCPITKQELSTLEPIPNHTIRKMIQDWCVVNSSYGIERIPTPRIPVTSRQVTEMLARVVAMSRSEEASACREVVAKVKRLVKENERNKRCFMANGTVGALASAFEAFSKVSFDKNVAVLEEILSCLSLMTPLDGEAKSYLGSNSSLSSMVWFLKRGHLSAQANSVLVLKHVLSTDQKKMEQFCSIEGALEALVKVIKEPVSPTTTKASLLIVYYMVSISSSRVDEKIIRRFIDMGLIERLLEMLVDCDKSICEKALGVLDGLCLDSQGREKAYADALTMPVLVKKILRVSDLATEFSVSIVWKLSKNETREDGGVIV-EALQVGAFQKLLLLLQFGCNENIKDKATELLKLLNLHREKLECIDSMDFKNLKR 440
            MISSWR+ RA R A K  G  +  + E++IPTHFRC ISLDLMKDPVTLS+GITYDR+SIETWIEAGN TCPI+ Q L +LEPIPNH IRKMIQDWCV N SYGIERIPTPRIPV+S  V E+L+ +   S+  +   C ++VAK+K L KE+ERNKRC MAN T   L++AFE F+K SF++N AVLEEILS L+L+ PLDGEA S LGS +SL  MV FLK G LS + N+VL LK +LS+D++K+     IEG+LEALVK+IKEP+ P++TKASL+ +Y++V  +SS   E I+ RF++MGL+  LLEMLVD ++SICEKALG+LDG+C   +GREK Y  ALT+PVLVKKILRVSDLATEFSVSI+W+L KNE RE+GGV+V EALQVGAFQKLLLLLQ GC E  K+KATELLKLLNLHR++LECIDSMDFK+LKR
Sbjct:    1 MISSWRRRRAGRRAAKDQGRGENGDSELTIPTHFRCSISLDLMKDPVTLSTGITYDRESIETWIEAGNKTCPISNQALKSLEPIPNHAIRKMIQDWCVDNQSYGIERIPTPRIPVSSVVVAEILSEITMASKRGDQEVCLQLVAKIKALWKESERNKRCIMANNTGSLLSAAFETFAKASFNRNDAVLEEILSALALLFPLDGEAMSCLGSAASLHCMVRFLKGGDLSGRRNAVLALKEILSSDERKVNALSEIEGSLEALVKLIKEPICPSSTKASLMAIYHVV--NSSFPKETIVERFVEMGLVSLLLEMLVDAERSICEKALGILDGICRSEKGREKPYDHALTIPVLVKKILRVSDLATEFSVSIIWELCKNEKREEGGVLVLEALQVGAFQKLLLLLQVGCAERTKEKATELLKLLNLHRDRLECIDSMDFKDLKR 439

[Close]

BLAST of XM_017364609.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A1V1I2 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))

HSP 1 Score: 579.711 bits (1493), Expect = 0.000e+0
Identity = 291/440 (66.14%), Postives = 363/440 (82.50%), Query Frame = 0

Query:    1 MISSWRKIRASRHANKRIGLDDISNMEVSIPTHFRCPISLDLMKDPVTLSSGITYDRQSIETWIEAGNNTCPITKQELSTLEPIPNHTIRKMIQDWCVVNSSYGIERIPTPRIPVTSRQVTEMLARVVAMSRSEEASACREVVAKVKRLVKENERNKRCFMANGTVGALASAFEAFSKVSFDKNVAVLEEILSCLSLMTPLDGEAKSYLGSNSSLSSMVWFLKRGHLSAQANSVLVLKHVLSTDQKKMEQFCSIEGALEALVKVIKEPVSPTTTKASLLIVYYMVSISSSRVDEKIIRRFIDMGLIERLLEMLVDCDKSICEKALGVLDGLCLDSQGREKAYADALTMPVLVKKILRVSDLATEFSVSIVWKLSKNETREDGGVIVEALQVGAFQKLLLLLQFGCNENIKDKATELLKLLNLHREKLECIDSMDFKNLKR 440
            MISSWR+ RA R A+K     +I +ME++IP+H+RCPISLDLMKDPVTLS+GITYDR SIETWIEAGN +CPIT Q L +LEPIPNH IRK+IQDWCV N SYGIERIPTPRIPV+S +V+E+L+++   S+ E+ + C E+V+K+K   KE+ERNKRC +AN T  AL++AFE F+K SF++NV+VLEEILS L+L+ PLD EAK++LGS +SL  MVWFLK G LS + N+VL LK  LS D+++++    IEGALEALVK+IKEP+ PT TKASL+++Y+M  ++SS   + I+ RF+DMGL+  LLE+LVD ++SICEKALGVLD +C   +G+EKAY+ ALTMPVLVKK+LR+SDLATEFSVSI+WKL +NE RE+GGV+VEALQVGAFQKLLLLLQ GC E  K KATELLK LNLHRE+LECIDSMDFK+LKR
Sbjct:    1 MISSWRRRRAGRRASKEQRRGEIGDMEITIPSHYRCPISLDLMKDPVTLSTGITYDRVSIETWIEAGNQSCPITNQVLRSLEPIPNHAIRKVIQDWCVDNQSYGIERIPTPRIPVSSVEVSEILSKITMASKREDQAGCLELVSKLKASAKESERNKRCIVANKTGSALSAAFETFAKASFERNVSVLEEILSALALLLPLDDEAKAFLGSAASLHCMVWFLKGGDLSGRRNAVLALKEALSLDEQRVDALSEIEGALEALVKLIKEPICPTATKASLMLIYHM--LNSSFPKDTIVERFLDMGLVSLLLEILVDTERSICEKALGVLDVICSSDKGKEKAYSHALTMPVLVKKLLRISDLATEFSVSILWKLCRNEKREEGGVLVEALQVGAFQKLLLLLQVGCAERTKGKATELLKSLNLHRERLECIDSMDFKDLKR 438


Match Name	Stats	Description
Q93VZ1	E-Value: 0.000e+0, PID: 88.89	RING-type E3 ubiquitin transferase {ECO:0000256\|AR... [more]
A0A6L5B8K6	E-Value: 0.000e+0, PID: 79.86	RING-type E3 ubiquitin transferase {ECO:0000256\|AR... [more]
A0A5B7BSG5	E-Value: 0.000e+0, PID: 67.35	RING-type E3 ubiquitin transferase {ECO:0000256\|AR... [more]
A0A438DGI6	E-Value: 0.000e+0, PID: 67.42	RING-type E3 ubiquitin transferase {ECO:0000256\|AR... [more]
F6HFB5	E-Value: 0.000e+0, PID: 67.87	RING-type E3 ubiquitin transferase {ECO:0000256\|AR... [more]
A0A6P4BER0	E-Value: 0.000e+0, PID: 65.63	RING-type E3 ubiquitin transferase {ECO:0000256\|AR... [more]
A0A438HXP2	E-Value: 0.000e+0, PID: 66.97	RING-type E3 ubiquitin transferase {ECO:0000256\|AR... [more]
A0A0A0RAL4	E-Value: 0.000e+0, PID: 67.19	RING-type E3 ubiquitin transferase {ECO:0000256\|AR... [more]
A0A2I4G200	E-Value: 0.000e+0, PID: 66.44	RING-type E3 ubiquitin transferase {ECO:0000256\|AR... [more]
A0A6A1V1I2	E-Value: 0.000e+0, PID: 66.14	RING-type E3 ubiquitin transferase {ECO:0000256\|AR... [more]

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100	The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR	This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.