XM_017367192.1

Resource Type: 
Polypeptide
Name: 
XM_017367192.1
Identifier: 
XM_017367192.1-protein
Sequence: 
MKYKDMSIAQAFLLVVFLVQAPGFIQCFRNVEDPELVVEEVHRSINASRR
NLGFLSCGTGNPIDDCWRCDKNWEKNRQRLADCAIGFGKHAIGGRDGKIY
VVTDNKDDDPVNPRPGTLRYAVIQDEPLWIIFKRDMVITLKEELMMNSFK
TIDGRGADVHIAGGPCITIQYVTNIIIHGVNIHDCKRGGNANVRDSPDHF
GWRTVSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDAIRGSTAITISNNYL
THHNKVMLLGHSDTYTQDRNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVN
NDYTHWEMYAIGGSASPTINSQGNRFLAPNNEFNKEVTKHEDAPKTEWSR
WNWRSEGDLLLNGAFFTTSGGGTSSKYAKASSLGARSSSLVGTITGGAGV
LSCRKGSHC
Sequence Length: 
409
Sequence Checksum: 
05ec10c68fa79d1650989ea829de783c
View location in JBrowse: 
DCARv2_Chr8:31273730..31275337-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017367192.1, derives from mRNA, XM_017367192.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017367192.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017367192.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4D9BRE4 (Pectate lyase {ECO:0000256|ARBA:ARBA00012272, ECO:0000256|RuleBase:RU361123} (4.2.2.2 {ECO:0000256|ARBA:ARBA00012272, ECO:0000256|RuleBase:RU361123}))

HSP 1 Score: 706.827 bits (1823), Expect = 0.000e+0
Identity = 335/401 (83.54%), Postives = 358/401 (89.28%), Query Frame = 0
 
Query:    9 AQAFLLVVFLVQAPGFIQCFRNVEDPELVVEEVHRSINASRRNLGFLSCGTGNPIDDCWRCDKNWEKNRQRLADCAIGFGKHAIGGRDGKIYVVTDNKDDDPVNPRPGTLRYAVIQDEPLWIIFKRDMVITLKEELMMNSFKTIDGRGADVHIAGGPCITIQYVTNIIIHGVNIHDCKRGGNANVRDSPDHFGWRTVSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDAIRGSTAITISNNYLTHHNKVMLLGHSDTYTQDRNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTINSQGNRFLAPNNEFNKEVTKHEDAPKTEWSRWNWRSEGDLLLNGAFFTTSGGGTSSKYAKASSLGARSSSLVGTITGGAGVLSCRKGSHC 409
             Q  +  +  + AP F      V DPEL+V+EV+  INASRRNLGFLSCGTGNPIDDCWRCD NWEKNRQRLADCAIGFGKHA GGRDGKIYVVTD+  D  VNP+PGTLRY VIQDEPLWIIF RDMVI LK+ELM+NSFKTIDGRGA VHIAGGPCIT+QYVTN+IIHG+NIHDCK+GGNA VRDSPDH+GWRTVSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDAI GSTAITISNNYLTHHNKVMLLGHSD+Y QD+NMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTINSQGNRFLAP+ E NKEVTKHEDAP++EW RWNWRSEGDL+LNGAFFT SG G SS YAKASSL AR SSLVGTITGG+G L+CRKG  C
Sbjct:   53 TQILMFTLLALLAPKFTFSSSPVPDPELIVQEVNEKINASRRNLGFLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKHATGGRDGKIYVVTDS-GDHAVNPKPGTLRYGVIQDEPLWIIFARDMVIRLKQELMVNSFKTIDGRGASVHIAGGPCITVQYVTNVIIHGLNIHDCKQGGNAYVRDSPDHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDAIHGSTAITISNNYLTHHNKVMLLGHSDSYKQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTINSQGNRFLAPDREDNKEVTKHEDAPESEWKRWNWRSEGDLMLNGAFFTLSGAGASSNYAKASSLSARPSSLVGTITGGSGSLNCRKGKRC 452
[Close]
BLAST of XM_017367192.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6N2MNB1 (Pectate lyase {ECO:0000256|ARBA:ARBA00012272, ECO:0000256|RuleBase:RU361123} (4.2.2.2 {ECO:0000256|ARBA:ARBA00012272, ECO:0000256|RuleBase:RU361123}))

HSP 1 Score: 699.123 bits (1803), Expect = 0.000e+0
Identity = 344/404 (85.15%), Postives = 368/404 (91.09%), Query Frame = 0
 
Query:    6 MSIAQAFLLVVFLVQAPGFIQCFRNVEDPELVVEEVHRSINASRRNLGFLSCGTGNPIDDCWRCDKNWEKNRQRLADCAIGFGKHAIGGRDGKIYVVTDNKDDDPVNPRPGTLRYAVIQDEPLWIIFKRDMVITLKEELMMNSFKTIDGRGADVHIAGGPCITIQYVTNIIIHGVNIHDCKRGGNANVRDSPDHFGWRTVSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDAIRGSTAITISNNYLTHHNKVMLLGHSDTYTQDRNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTINSQGNRFLAPNNEFNKEVTKHEDAPKTEWSRWNWRSEGDLLLNGAFFTTSGGGTSSKYAKASSLGARSSSLVGTITGGAGVLSCRKGSHC 409
            M+I  +  +++ L+ AP FI C   V+DPE+VVEEVHRSINASRR LGFLSCGTGNPIDDCWRCD  WE+NRQRLADCAIGFGKHAIGGRDGKIY VTD+ DDDPVNP+PGTLR+AVIQDEPLWI+F RDMVI LKEEL+MNSFKTIDGRGA VHIAGGPCITIQYVTNIIIHGVNIHDCKRGGNA+VRDSP H+GWRTVSDGDGVSIFGGSHVWVDHCSLSNC DGLIDAI GSTAITISNNYLTHHNKVMLLGHSD+Y QD+NMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHW+MYAIGGSA PTINSQGNRFLAPN+ FNKEVTKHEDAP++ W RWNWRSEGDLLLNGAFFT SG G SS YAKASSLGARSSSLV +IT GAG L C+KGS C
Sbjct:    1 MTIPLSLSILLLLILAPNFISC-SPVQDPEVVVEEVHRSINASRRKLGFLSCGTGNPIDDCWRCDPKWEENRQRLADCAIGFGKHAIGGRDGKIYPVTDSGDDDPVNPKPGTLRHAVIQDEPLWIVFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGVNIHDCKRGGNAHVRDSPSHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYLTHHNKVMLLGHSDSYKQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWKMYAIGGSADPTINSQGNRFLAPNDRFNKEVTKHEDAPQSAWKRWNWRSEGDLLLNGAFFTASGAGASSSYAKASSLGARSSSLVSSITAGAGSLVCKKGSRC 403
[Close]
BLAST of XM_017367192.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P5F0T6 (Pectate lyase {ECO:0000256|ARBA:ARBA00012272, ECO:0000256|RuleBase:RU361123} (4.2.2.2 {ECO:0000256|ARBA:ARBA00012272, ECO:0000256|RuleBase:RU361123}))

HSP 1 Score: 698.353 bits (1801), Expect = 0.000e+0
Identity = 327/379 (86.28%), Postives = 350/379 (92.35%), Query Frame = 0
 
Query:   31 VEDPELVVEEVHRSINASRRNLGFLSCGTGNPIDDCWRCDKNWEKNRQRLADCAIGFGKHAIGGRDGKIYVVTDNKDDDPVNPRPGTLRYAVIQDEPLWIIFKRDMVITLKEELMMNSFKTIDGRGADVHIAGGPCITIQYVTNIIIHGVNIHDCKRGGNANVRDSPDHFGWRTVSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDAIRGSTAITISNNYLTHHNKVMLLGHSDTYTQDRNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTINSQGNRFLAPNNEFNKEVTKHEDAPKTEWSRWNWRSEGDLLLNGAFFTTSGGGTSSKYAKASSLGARSSSLVGTITGGAGVLSCRKGSHC 409
            V DPEL+V+EVH+SINASRRNLGFLSCGTGNPIDDCWRCD  WEKNR+RLADCAIGFGKHA GGRDGKIYVVTD   D PVNP+PGTLRY  IQDEPLWIIF+RDMVI LKEELM+NSFKTIDGRGA VHIAGGPCITIQYVTNIIIHG+NIHDCK+GGNA VRDSP H+GWRT+SDGDGVSIFGGSH+WVDHCSLSNCRDGLIDAI GSTAITISNNY+THHNKVMLLGHSD+Y QD+NMQVTIAFNHFGEGLVQRMPRCR GYFHVVNNDYTHW+MYAIGGSASPTINSQGNRFLAPN+ FNKEVTKHEDAP+ EW +WNWRSEGDLLLNGAFFT SG G+SS YAKASSLGAR SSLV ++T GAG L C+KGS C
Sbjct:   25 VHDPELIVQEVHKSINASRRNLGFLSCGTGNPIDDCWRCDPQWEKNRKRLADCAIGFGKHATGGRDGKIYVVTD-AGDHPVNPKPGTLRYGAIQDEPLWIIFQRDMVIKLKEELMVNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKQGGNAYVRDSPSHYGWRTLSDGDGVSIFGGSHIWVDHCSLSNCRDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDSYKQDKNMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWQMYAIGGSASPTINSQGNRFLAPNDRFNKEVTKHEDAPQKEWKKWNWRSEGDLLLNGAFFTASGAGSSSNYAKASSLGARPSSLVSSLTSGAGSLRCKKGSRC 402
[Close]
BLAST of XM_017367192.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A835DQ58 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8408347.1}))

HSP 1 Score: 697.582 bits (1799), Expect = 0.000e+0
Identity = 325/391 (83.12%), Postives = 354/391 (90.54%), Query Frame = 0
 
Query:   19 VQAPGFIQCFRNVEDPELVVEEVHRSINASRRNLGFLSCGTGNPIDDCWRCDKNWEKNRQRLADCAIGFGKHAIGGRDGKIYVVTDNKDDDPVNPRPGTLRYAVIQDEPLWIIFKRDMVITLKEELMMNSFKTIDGRGADVHIAGGPCITIQYVTNIIIHGVNIHDCKRGGNANVRDSPDHFGWRTVSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDAIRGSTAITISNNYLTHHNKVMLLGHSDTYTQDRNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTINSQGNRFLAPNNEFNKEVTKHEDAPKTEWSRWNWRSEGDLLLNGAFFTTSGGGTSSKYAKASSLGARSSSLVGTITGGAGVLSCRKGSHC 409
            V AP  I     V+DP+LVV++VHRSINASRRNL +LSCGTGNPIDDCWRCD NWE NRQRLADCAIGFGK AIGGRDG+IYVVTD+ DDDPV PRPGTLRY VIQDEPLWIIF RDMVI LKEEL+MNSFKT+DGRGA VHIAGGPCITIQYVTNIIIHG+NIHDCK+GGN NVR SP H GWRT+SDGDGVSIFGGSHVWVDHCSLSNCRDGLID I GSTAITISNNY+THH+KVMLLGHSD+YTQD+NMQVT+AFNHFGEGLVQRMPRCRHGYFHVVNNDYTHW+MYAIGGSA PTINSQGNRFLAPN+ FNKEVTKHEDAP++EW  WNWRS+GDL+LNGA+FT SG G SS YA+ASSLGAR SSLVG+IT  +G L+C+KGS C
Sbjct:  106 VLAPTLISS-SPVQDPDLVVQDVHRSINASRRNLAYLSCGTGNPIDDCWRCDANWETNRQRLADCAIGFGKQAIGGRDGRIYVVTDSGDDDPVTPRPGTLRYGVIQDEPLWIIFARDMVIQLKEELIMNSFKTLDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKQGGNTNVRSSPSHSGWRTLSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDVIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTVAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWQMYAIGGSADPTINSQGNRFLAPNDRFNKEVTKHEDAPESEWKNWNWRSDGDLMLNGAYFTPSGAGASSTYARASSLGARPSSLVGSITMSSGALNCKKGSRC 495
[Close]
BLAST of XM_017367192.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4D9B8N2 (Pectate lyase {ECO:0000256|ARBA:ARBA00012272, ECO:0000256|RuleBase:RU361123} (4.2.2.2 {ECO:0000256|ARBA:ARBA00012272, ECO:0000256|RuleBase:RU361123}))

HSP 1 Score: 697.197 bits (1798), Expect = 0.000e+0
Identity = 332/400 (83.00%), Postives = 357/400 (89.25%), Query Frame = 0
 
Query:   10 QAFLLVVFLVQAPGFIQCFRNVEDPELVVEEVHRSINASRRNLGFLSCGTGNPIDDCWRCDKNWEKNRQRLADCAIGFGKHAIGGRDGKIYVVTDNKDDDPVNPRPGTLRYAVIQDEPLWIIFKRDMVITLKEELMMNSFKTIDGRGADVHIAGGPCITIQYVTNIIIHGVNIHDCKRGGNANVRDSPDHFGWRTVSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDAIRGSTAITISNNYLTHHNKVMLLGHSDTYTQDRNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTINSQGNRFLAPNNEFNKEVTKHEDAPKTEWSRWNWRSEGDLLLNGAFFTTSGGGTSSKYAKASSLGARSSSLVGTITGGAGVLSCRKGSHC 409
            Q  +  +  + AP F      V DPEL+V+EV+  INASRRNLGFLSCGTGNPIDDCWRCD NWEKNRQRLADCAIGFGKHA GGRDGKIYVVTD+  D  VNP+PGTLRY VIQ+EPLWIIF +DMVI LK+ELM+NSFKTIDGRGA VHIAGGPCIT+QYVTN+IIHG+NIHDCK+GGNA VRDSPDH+GWRTVSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDAI GSTAITISNNYLTHHNKVMLLGHSD+Y QD+NMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTINSQGNRFLAP+ E +KEVTKHEDAP+ EW RWNWRSEGDL+LNGAFFT SG G SS YAKASSL AR SSLVGTITGG+G L+CRKG  C
Sbjct:    4 QILMFTLLALLAPKFTFS-SPVPDPELIVQEVNEKINASRRNLGFLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKHATGGRDGKIYVVTDS-GDHAVNPKPGTLRYGVIQNEPLWIIFAQDMVIRLKQELMVNSFKTIDGRGASVHIAGGPCITVQYVTNVIIHGLNIHDCKQGGNAYVRDSPDHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDAIHGSTAITISNNYLTHHNKVMLLGHSDSYKQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTINSQGNRFLAPDREDSKEVTKHEDAPEGEWKRWNWRSEGDLMLNGAFFTLSGAGASSNYAKASSLSARPSSLVGTITGGSGSLNCRKGKRC 401
[Close]
BLAST of XM_017367192.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: Q93XJ1 (Pectate lyase {ECO:0000256|ARBA:ARBA00012272, ECO:0000256|RuleBase:RU361123} (4.2.2.2 {ECO:0000256|ARBA:ARBA00012272, ECO:0000256|RuleBase:RU361123}))

HSP 1 Score: 696.812 bits (1797), Expect = 0.000e+0
Identity = 343/408 (84.07%), Postives = 368/408 (90.20%), Query Frame = 0
 
Query:    2 KYKDMSIAQAFLLVVFLVQAPGFIQCFRNVEDPELVVEEVHRSINASRRNLGFLSCGTGNPIDDCWRCDKNWEKNRQRLADCAIGFGKHAIGGRDGKIYVVTDNKDDDPVNPRPGTLRYAVIQDEPLWIIFKRDMVITLKEELMMNSFKTIDGRGADVHIAGGPCITIQYVTNIIIHGVNIHDCKRGGNANVRDSPDHFGWRTVSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDAIRGSTAITISNNYLTHHNKVMLLGHSDTYTQDRNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTINSQGNRFLAPNNEFNKEVTKHEDAPKTEWSRWNWRSEGDLLLNGAFFTTSGGGTSSKYAKASSLGARSSSLVGTITGGAGVLSCRKGSHC 409
            K + M+I  +  +++ L+ AP FI C   V+DPE+VVEEVHRSINASRR LGFLSCGTGNPIDDCWRCD  W +NRQRLADCAIGFGKHAIGGRDGKIY VTD+ DDDPVNP+PGTLRYAVIQDEPLWI+F RDMVI L+EEL+MNSFKTIDGRGA VHIAGGPCITIQYVTNIIIHGVNIHDCKRGGNA+VRDSP H+GWRTVSDGDGVSIFGGSHVWVDHCSLSNC DGLIDAI GSTAITISNNYLTHHNKVMLLGHSD+Y QD+NMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHW+MYAIGGSA PTINSQGNRFLAPN+ FNKEVTKHEDAP++ W  WNWRSEGDLLLNGAFFT SG G SS YAKASSLGARSSSLV +IT GAG L C+KGS C
Sbjct:    3 KERAMTIPLSLSILLLLILAPNFISC-SPVQDPEVVVEEVHRSINASRRKLGFLSCGTGNPIDDCWRCDPKWGENRQRLADCAIGFGKHAIGGRDGKIYAVTDSGDDDPVNPKPGTLRYAVIQDEPLWIVFARDMVIKLREELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGVNIHDCKRGGNAHVRDSPSHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYLTHHNKVMLLGHSDSYKQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWKMYAIGGSADPTINSQGNRFLAPNDRFNKEVTKHEDAPQSAWKGWNWRSEGDLLLNGAFFTASGAGASSSYAKASSLGARSSSLVSSITAGAGSLVCKKGSRC 409
[Close]
BLAST of XM_017367192.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6L2NRN4 (Pectate lyase {ECO:0000256|ARBA:ARBA00012272, ECO:0000256|RuleBase:RU361123} (4.2.2.2 {ECO:0000256|ARBA:ARBA00012272, ECO:0000256|RuleBase:RU361123}))

HSP 1 Score: 696.041 bits (1795), Expect = 0.000e+0
Identity = 323/390 (82.82%), Postives = 348/390 (89.23%), Query Frame = 0
 
Query:   12 FLLVVFLVQAPGFIQCFRNVEDPELVVEEVHRSINASRRNLGFLSCGTGNPIDDCWRCDKNWEKNRQRLADCAIGFGKHAIGGRDGKIYVVTDNKDDDPVNPRPGTLRYAVIQDEPLWIIFKRDMVITLKEELMMNSFKTIDGRGADVHIAGGPCITIQYVTNIIIHGVNIHDCKRGGNANVRDSPDHFGWRTVSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDAIRGSTAITISNNYLTHHNKVMLLGHSDTYTQDRNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTINSQGNRFLAPNNEFNKEVTKHEDAPKTEWSRWNWRSEGDLLLNGAFFTTSGGGTSSKYAKASSLGARSSSLVGTITGGAGVL 401
            FLL+  +  +  F    +  EDP LVVE VHR IN SRRN+GFLSCGTGNPIDDCWRCDKNWEKNRQRLADCAIGFGKHAIGGRDGKIYVVTD+K+DDPVNP+PGTLRY VIQ+EPLWIIF  DM I LKEELMMNSFKTIDGRGADVHIAGGPCITIQYV+NIIIHGVNIHDCK+GGN +VRDSPDH+G+RT+SDGDGVSIFGGSHVWVDHCSL+NC DGLIDAI GSTAITISNNY+THH+KVMLLGHSDT T D+NMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTINSQGNRFLAPN E NKEVTK E+A + EW  WNWRSEGDL+LNGAFFT SG G S  YA+ASSL AR SS+VG+IT  AGVL
Sbjct:    6 FLLLALIAPSSTFSTPIQ--EDPTLVVEHVHRKINESRRNMGFLSCGTGNPIDDCWRCDKNWEKNRQRLADCAIGFGKHAIGGRDGKIYVVTDSKNDDPVNPKPGTLRYGVIQNEPLWIIFAHDMTIKLKEELMMNSFKTIDGRGADVHIAGGPCITIQYVSNIIIHGVNIHDCKQGGNTDVRDSPDHYGFRTISDGDGVSIFGGSHVWVDHCSLANCHDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDTLTSDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTINSQGNRFLAPNTEDNKEVTKREEAGEDEWKSWNWRSEGDLMLNGAFFTPSGAGASKSYARASSLSARPSSIVGSITANAGVL 393
[Close]
BLAST of XM_017367192.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A540NTL3 (Pectate lyase {ECO:0000256|ARBA:ARBA00012272, ECO:0000256|RuleBase:RU361123} (4.2.2.2 {ECO:0000256|ARBA:ARBA00012272, ECO:0000256|RuleBase:RU361123}))

HSP 1 Score: 694.115 bits (1790), Expect = 0.000e+0
Identity = 325/379 (85.75%), Postives = 351/379 (92.61%), Query Frame = 0
 
Query:   31 VEDPELVVEEVHRSINASRRNLGFLSCGTGNPIDDCWRCDKNWEKNRQRLADCAIGFGKHAIGGRDGKIYVVTDNKDDDPVNPRPGTLRYAVIQDEPLWIIFKRDMVITLKEELMMNSFKTIDGRGADVHIAGGPCITIQYVTNIIIHGVNIHDCKRGGNANVRDSPDHFGWRTVSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDAIRGSTAITISNNYLTHHNKVMLLGHSDTYTQDRNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTINSQGNRFLAPNNEFNKEVTKHEDAPKTEWSRWNWRSEGDLLLNGAFFTTSGGGTSSKYAKASSLGARSSSLVGTITGGAGVLSCRKGSHC 409
            V+DPELV++EV  SINASRRNLG+LSCGTGNPIDDCWRCD NWEKNRQRLADCAIGFGKHAIGGRDGKIYVVTD+  D PVNP+PGTLRY VIQ+EPLWIIF+RDM I L EELMMNSFKTIDGRG+ VHIAGGPCITIQYVTNIIIHG+NIHDCK+GGNA VRDSP+HFGWRT+SDGDGVSIFGGSHVWVDH SLSNCRDGLIDAI GST+ITISNNY+THHNKVMLLGHSD+YTQD+NMQVTIAFNHFGEGL+QRMPRCRHG FHVVNNDYTHWEMYAIGGSASPTINSQGNRFLAPN+ FNKEVTKHEDAP+TEWS+WNWRS GDLLLNGAFFT SG G S+ Y+KASSL AR SSLV ++T GAG L C+KGS C
Sbjct:   24 VKDPELVMQEVQESINASRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKHAIGGRDGKIYVVTDS-GDHPVNPKPGTLRYGVIQNEPLWIIFQRDMTIKLNEELMMNSFKTIDGRGSSVHIAGGPCITIQYVTNIIIHGLNIHDCKQGGNAYVRDSPEHFGWRTLSDGDGVSIFGGSHVWVDHNSLSNCRDGLIDAIHGSTSITISNNYMTHHNKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLIQRMPRCRHGNFHVVNNDYTHWEMYAIGGSASPTINSQGNRFLAPNDRFNKEVTKHEDAPQTEWSKWNWRSSGDLLLNGAFFTASGAGASTSYSKASSLSARPSSLVSSLTAGAGSLRCKKGSRC 401
[Close]
BLAST of XM_017367192.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A803PH52 (Pectate lyase {ECO:0000256|ARBA:ARBA00012272, ECO:0000256|RuleBase:RU361123} (4.2.2.2 {ECO:0000256|ARBA:ARBA00012272, ECO:0000256|RuleBase:RU361123}))

HSP 1 Score: 694.115 bits (1790), Expect = 0.000e+0
Identity = 329/403 (81.64%), Postives = 354/403 (87.84%), Query Frame = 0
 
Query:    7 SIAQAFLLVVFLVQAPGFIQCFRNVEDPELVVEEVHRSINASRRNLGFLSCGTGNPIDDCWRCDKNWEKNRQRLADCAIGFGKHAIGGRDGKIYVVTDNKDDDPVNPRPGTLRYAVIQDEPLWIIFKRDMVITLKEELMMNSFKTIDGRGADVHIAGGPCITIQYVTNIIIHGVNIHDCKRGGNANVRDSPDHFGWRTVSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDAIRGSTAITISNNYLTHHNKVMLLGHSDTYTQDRNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTINSQGNRFLAPNNEFNKEVTKHEDAPKTEWSRWNWRSEGDLLLNGAFFTTSGGGTSSKYAKASSLGARSSSLVGTITGGAGVLSCRKGSHC 409
            +I  A LL   L  +P  I     VEDPEL+V+EVH+S+N SRRNLGFLSCGTGNPIDDCWRCD NWEKNR+RLADCAIGFGKHAIGGRDGKIYVVTD   D PV P+PGTLRY  IQDEPLWIIFKRDMVI LK+ELM+NSFKTIDGRGA VHIAGGPCITIQYVTN+IIHG+NIHDCK+GGNA VRDSP HFGWRT+SDGDGVSIFGGSH+WVDH SLSNCRDGLIDAI GSTAITIS+NY+THHNKVMLLGHSD+Y QD+NMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHW+MYAIGGSASPTINSQGNRFLAPN+ F+KE+TKHEDA   +W  WNWRSEGDL LNGAFFT SG G SS YAKASSL AR SSLV +IT GAG L CRKGS C
Sbjct:    3 TITMAMLLFSLLSFSPTLISS-SPVEDPELIVQEVHKSLNESRRNLGFLSCGTGNPIDDCWRCDPNWEKNRKRLADCAIGFGKHAIGGRDGKIYVVTD-PSDHPVKPKPGTLRYGAIQDEPLWIIFKRDMVIKLKQELMVNSFKTIDGRGASVHIAGGPCITIQYVTNVIIHGLNIHDCKQGGNAYVRDSPTHFGWRTLSDGDGVSIFGGSHIWVDHNSLSNCRDGLIDAIHGSTAITISSNYMTHHNKVMLLGHSDSYKQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWKMYAIGGSASPTINSQGNRFLAPNDRFSKEITKHEDAAHKQWKNWNWRSEGDLYLNGAFFTRSGAGASSNYAKASSLAARPSSLVSSITAGAGSLRCRKGSRC 403
[Close]
BLAST of XM_017367192.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4P1R3P5 (Pectate lyase {ECO:0000256|ARBA:ARBA00012272, ECO:0000256|RuleBase:RU361123} (4.2.2.2 {ECO:0000256|ARBA:ARBA00012272, ECO:0000256|RuleBase:RU361123}))

HSP 1 Score: 694.115 bits (1790), Expect = 0.000e+0
Identity = 324/381 (85.04%), Postives = 352/381 (92.39%), Query Frame = 0
 
Query:   31 VEDPELVVEEVHRSINAS--RRNLGFLSCGTGNPIDDCWRCDKNWEKNRQRLADCAIGFGKHAIGGRDGKIYVVTDNKDDDPVNPRPGTLRYAVIQDEPLWIIFKRDMVITLKEELMMNSFKTIDGRGADVHIAGGPCITIQYVTNIIIHGVNIHDCKRGGNANVRDSPDHFGWRTVSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDAIRGSTAITISNNYLTHHNKVMLLGHSDTYTQDRNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTINSQGNRFLAPNNEFNKEVTKHEDAPKTEWSRWNWRSEGDLLLNGAFFTTSGGGTSSKYAKASSLGARSSSLVGTITGGAGVLSCRKGSHC 409
            ++DPELV +EV+R INAS  RRNLG+LSCGTGNPIDDCWRCD NWE NRQRLADCAIGFGK+A+GGRDGKIYVVTD+ DDDPV P+PGTLRYAVIQDEPLWIIF RDMVI LKEEL+MNSFKTIDGRGA VHIAGGPCITIQYVTN+I+HG+NIHDCK+GGNA VRDSP H+GWRT+SDGDGVSIFGGSH+WVDHCSLSNC DGLIDAI GSTAITISNNY+THH+KVMLLGHSDTYTQD+NMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSA+PTINSQGNRF+APN+ F+KEVTKHEDAP+ EW  WNWRSEGDLL+NGAFFT SG G SS YA+ASSL AR SSLVG+IT  AG LSCRKGS C
Sbjct:   26 LQDPELVSQEVNREINASMARRNLGYLSCGTGNPIDDCWRCDPNWENNRQRLADCAIGFGKNAVGGRDGKIYVVTDSGDDDPVTPKPGTLRYAVIQDEPLWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNVIVHGINIHDCKQGGNAMVRDSPQHYGWRTISDGDGVSIFGGSHIWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPNDRFSKEVTKHEDAPENEWKEWNWRSEGDLLVNGAFFTPSGAGASSIYARASSLSARPSSLVGSITTAAGALSCRKGSRC 406
Match NameStatsDescription
A0A4D9BRE4E-Value: 0.000e+0, PID: 83.54Pectate lyase {ECO:0000256|ARBA:ARBA00012272, ECO:... [more]
A0A6N2MNB1E-Value: 0.000e+0, PID: 85.15Pectate lyase {ECO:0000256|ARBA:ARBA00012272, ECO:... [more]
A0A2P5F0T6E-Value: 0.000e+0, PID: 86.28Pectate lyase {ECO:0000256|ARBA:ARBA00012272, ECO:... [more]
A0A835DQ58E-Value: 0.000e+0, PID: 83.12(Uncharacterized protein {ECO:0000313|EMBL:KAF8408... [more]
A0A4D9B8N2E-Value: 0.000e+0, PID: 83.00Pectate lyase {ECO:0000256|ARBA:ARBA00012272, ECO:... [more]
Q93XJ1E-Value: 0.000e+0, PID: 84.07Pectate lyase {ECO:0000256|ARBA:ARBA00012272, ECO:... [more]
A0A6L2NRN4E-Value: 0.000e+0, PID: 82.82Pectate lyase {ECO:0000256|ARBA:ARBA00012272, ECO:... [more]
A0A540NTL3E-Value: 0.000e+0, PID: 85.75Pectate lyase {ECO:0000256|ARBA:ARBA00012272, ECO:... [more]
A0A803PH52E-Value: 0.000e+0, PID: 81.64Pectate lyase {ECO:0000256|ARBA:ARBA00012272, ECO:... [more]
A0A4P1R3P5E-Value: 0.000e+0, PID: 85.04Pectate lyase {ECO:0000256|ARBA:ARBA00012272, ECO:... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.