Resource Type:
Polypeptide
Name:
XM_017367858.1
Identifier:
XM_017367858.1-protein
Sequence:
MGLSCYAILFLGLVPALMCQVTEFVSIDCGGTKNYTDLNTGLEWISDTGF
INHGKSVRLENPDATSSQYQTRRDFPIDDKKYCYTLRTEERRRYLVRATF
LYGNSAENTYPKFWLYLDATKWSTVTIMDASKVHVKEMIIRAPSSSIDVC
LCHATTGSPFISTLELRPLNLSMYATEFEDDFYLKVAARVNFGAASVQAI
RYPDDPYDRIWSSDLEKRQNFLVGVAPGTRRINTTKYINTNTREYPPNKV
MQTAVVGTRGRLTYRLNLEDFPANARAYAYFAEIEDLGTLDSRKFRIEQP
YMPDYYNAVVNIAENANGSYTLYEPSFMNATLDFVLSFSFVKTQDSTRGP
LLNAIEISKYVQIAKKTNMQDVNILNSLRAKSKDSNWVDEDGGDPCLPTP
WEWVTCSSDIQPRITKIALSGKDVEGNIPPELNNMDGLIELWLDGNSFQG
PIPDISNLINLQVLHLENNKLTGPLPPYLGSLPSLRELYVDNNSLTGDIP
SALLKGKVKLGYEGNPGLRNVTKHKRNRRVIVGVAIGVLAILLLLLIGSL
LLLCRLQKKRSHQNNAKSDSLRTSTKRSSAFSIARGGSLMEEGVAYHITF
CEIEEATKNFSKQIGKGSFGPVYYGKMKDGKEIAVKIMADSSSHGTRQFV
TEIALLSRIHHRNLVPLIGYCEEENQSMLVYEYMHNGTLRDHMHDSSNQK
QLDWLARLRIAEDAAKGLEYLHSGCNPSIIHRDVKTSNILLDINMRAKVS
DFGLSRQTEEDQTHISSVAQGTVGYLDPGYYANHQLTEKSDIYSFGVVLL
ELISGRKPISAEEFGLDWSIVHWARSMIRKGDIISIIDPSLAEKVKIESI
WRVAEVAIQCVEQHSSSRPRMQEIILAIQDAIKIEKGCDKITSGTSKSES
SRRTLLTSFLDDIDSPELSDESLAPSAR
Sequence Length:
928
Sequence Checksum:
48a03a1b783012fd79aa58816292180e
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017367858.1, derives from mRNA, XM_017367858.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017367858.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017367858.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9TYX6 ((probable LRR receptor-like serine/threonine-protein kinase At1g67720 {ECO:0000313|RefSeq:XP_011086716.1}))
HSP 1 Score: 1433.7 bits (3710), Expect = 0.000e+0
Identity = 703/924 (76.08%), Postives = 796/924 (86.15%), Query Frame = 0
Match: A0A6I9TYX6 ((probable LRR receptor-like serine/threonine-protein kinase At1g67720 {ECO:0000313|RefSeq:XP_011086716.1}))
HSP 1 Score: 1433.7 bits (3710), Expect = 0.000e+0
Identity = 703/924 (76.08%), Postives = 796/924 (86.15%), Query Frame = 0
Query: 8 ILFLGLVPALMCQVTEFVSIDCGGTKNYTDLNTGLEWISDTGFINH-GKSVRLENPDATSSQYQTRRDFPIDDKKYCYTLRTEERRRYLVRATFLYGNSAEN-TYPKFWLYLDATKWSTVTIMDASKVHVKEMIIRAPSSSIDVCLCHATTGSPFISTLELRPLNLSMYATEFEDDFYLKVAARVNFGAASVQAIRYPDDPYDRIWSSDLEKRQNFLVGVAPGTRRINTTKYINTNTREYPPNKVMQTAVVGTRGRLTYRLNLEDFPANARAYAYFAEIEDLGTLDSRKFRIEQPYMPDYYNAVVNIAENANGSYTLYEPSFMNATLDFVLSFSFVKTQDSTRGPLLNAIEISKYVQIAKKTNMQDVNILNSLRAKSKDSNWVDEDGGDPCLPTPWEWVTCSSDIQPRITKIALSGKDVEGNIPPELNNMDGLIELWLDGNSFQGPIPDISNLINLQVLHLENNKLTGPLPPYLGSLPSLRELYVDNNSLTGDIPSALLKGKVKLGYEGNPGLRNVTKHKRNRRVIVGVAIGVLAILLLLLIGSLLLLCRLQKKRSHQNNAKSDSLRTSTKRSSAFSIARGGSLMEEGVAYHITFCEIEEATKNFSKQIGKGSFGPVYYGKMKDGKEIAVKIMADSSSHGTRQFVTEIALLSRIHHRNLVPLIGYCEEENQSMLVYEYMHNGTLRDHMHDSSNQKQLDWLARLRIAEDAAKGLEYLHSGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQTEEDQTHISSVAQGTVGYLDPGYYANHQLTEKSDIYSFGVVLLELISGRKPISAEEFGLDWSIVHWARSMIRKGDIISIIDPSLAEKVKIESIWRVAEVAIQCVEQHSSSRPRMQEIILAIQDAIKIEKGCDKI-TSGTSKSESSRRTLLTSFLDDIDSPELSDESLAPSAR 928
+ FL L+P++ QVTEF+SIDCGGT NYTD TGL WISD G I G SVR+ + + QYQTRRDFP D KKYCYTL TEERRRY+VRATFLYG S TYPKF LYLDATKWSTVT+M+AS+V+VKEMIIRAPS SIDVCLC ATTGSPFISTLE+RPLNLSMYAT++EDDFYLKVA RVNFGA S +AIRYPDDPYDRIW SDLE+R NFLVGVA GT RINTT+ I+ NTREYPP KVMQTAVVGT+G LTYRLNLEDFPANARAYAYFAEIEDLG ++RKF++EQPYMPDY NAVVNIAENANGSYTLYEPS+MN +LDFVLSFSFVKT+DSTRGPLLNA+EIS+YV+IA KT+ QDV LN+LR+ S S W +E GDPC+PT WEWVTCSS PRITKI LSGK V G IP ELNNM+ L ELWLDGNS IPD+SNL+NL++LHLENN+LTG LPP+LGSLP L+EL++ NNSL+G+IP +LL+G + YEGNP LR V K RN+ +++G +IGVLA+L +L I S+LLLCR + K S Q K +S R +TK +A SIARGGS+MEEGVAY+I +IEEAT FS++IGKGSFGPVYYGKMKDGKE+AVKIMADSSSHGT+QF+TE+ALLSRIHHRNLVPLIGYCEEE+Q MLVYEYMHNGTLRDH+HD NQK LDWLARLRIAEDAAKGLEYLH+GCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQ EED THISSVA+GTVGYLDP YYAN QLTEKSD+YSFGVVLLELISGRKP+S EE+G DWSIVHWARS+IRKGD+ISIIDP+L VK+ES+WR+AEVAIQCVEQHS SRPRMQEIILAIQDAIKIEKG DK+ +SG+SK++SSR+TLLTSFL DI SP+LS+ SL PSAR
Sbjct: 9 LAFLCLIPSIFGQVTEFISIDCGGTGNYTDRRTGLAWISDAGVIGEKGISVRVGDVYGNAPQYQTRRDFPTDGKKYCYTLPTEERRRYIVRATFLYGTSMTGGTYPKFQLYLDATKWSTVTVMEASRVYVKEMIIRAPSHSIDVCLCCATTGSPFISTLEMRPLNLSMYATDYEDDFYLKVAERVNFGAPSQEAIRYPDDPYDRIWESDLERRPNFLVGVATGTERINTTRNIDVNTREYPPVKVMQTAVVGTKGSLTYRLNLEDFPANARAYAYFAEIEDLGVNETRKFKMEQPYMPDYSNAVVNIAENANGSYTLYEPSYMNVSLDFVLSFSFVKTRDSTRGPLLNAMEISRYVEIAAKTDEQDVRSLNALRSMSMQSPWTEE-AGDPCIPTNWEWVTCSSTAPPRITKILLSGKKVTGEIPRELNNMEALTELWLDGNSLNWTIPDMSNLVNLKILHLENNQLTGSLPPFLGSLPYLQELHIQNNSLSGEIPPSLLRGNLTFSYEGNPHLRRV-KRTRNK-LVLGTSIGVLAVLFVLSISSILLLCRSRSKTSLQRKEKGNSWRMNTKPLNAHSIARGGSIMEEGVAYYIPLPDIEEATNGFSRKIGKGSFGPVYYGKMKDGKEVAVKIMADSSSHGTKQFITEVALLSRIHHRNLVPLIGYCEEEHQRMLVYEYMHNGTLRDHIHDPDNQKHLDWLARLRIAEDAAKGLEYLHTGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQAEEDLTHISSVARGTVGYLDPEYYANQQLTEKSDVYSFGVVLLELISGRKPVSTEEYGSDWSIVHWARSLIRKGDVISIIDPTLVGSVKVESVWRIAEVAIQCVEQHSFSRPRMQEIILAIQDAIKIEKGTDKLDSSGSSKAQSSRKTLLTSFL-DIQSPDLSNGSLVPSAR 928
BLAST of XM_017367858.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9G0C4 ((Serine/threonine protein kinase {ECO:0000313|EMBL:PIM98359.1}) (2.7.11.1 {ECO:0000313|EMBL:PIM98359.1}))
HSP 1 Score: 1431.77 bits (3705), Expect = 0.000e+0
Identity = 694/931 (74.54%), Postives = 804/931 (86.36%), Query Frame = 0
Match: A0A2G9G0C4 ((Serine/threonine protein kinase {ECO:0000313|EMBL:PIM98359.1}) (2.7.11.1 {ECO:0000313|EMBL:PIM98359.1}))
HSP 1 Score: 1431.77 bits (3705), Expect = 0.000e+0
Identity = 694/931 (74.54%), Postives = 804/931 (86.36%), Query Frame = 0
Query: 3 LSCYAILFLG---LVPALMCQVTEFVSIDCGGTKNYTDLNTGLEWISDTGFINHGKSVRLENPDATSSQYQTRRDFPIDDKKYCYTLRTEERRRYLVRATFLYGNSA-ENTYPKFWLYLDATKWSTVTIMDASKVHVKEMIIRAPSSSIDVCLCHATTGSPFISTLELRPLNLSMYATEFEDDFYLKVAARVNFGAASVQAIRYPDDPYDRIWSSDLEKRQNFLVGVAPGTRRINTTKYINTNTREYPPNKVMQTAVVGTRGRLTYRLNLEDFPANARAYAYFAEIEDLGTLDSRKFRIEQPYMPDYYNAVVNIAENANGSYTLYEPSFMNATLDFVLSFSFVKTQDSTRGPLLNAIEISKYVQIAKKTNMQDVNILNSLRAKSKDSNWVDEDGGDPCLPTPWEWVTCSSDIQPRITKIALSGKDVEGNIPPELNNMDGLIELWLDGNSFQGPIPDISNLINLQVLHLENNKLTGPLPPYLGSLPSLRELYVDNNSLTGDIPSALLKGKVKLGYEGNPGLRNVTKHKRNRRVIVGVAIGVLAILLLLLIGSLLLLCRLQKKRSHQNNAKSDSLRTSTKRSSAFSIARGGSLMEEGVAYHITFCEIEEATKNFSKQIGKGSFGPVYYGKMKDGKEIAVKIMADSSSHGTRQFVTEIALLSRIHHRNLVPLIGYCEEENQSMLVYEYMHNGTLRDHMHDSSNQKQLDWLARLRIAEDAAKGLEYLHSGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQTEEDQTHISSVAQGTVGYLDPGYYANHQLTEKSDIYSFGVVLLELISGRKPISAEEFGLDWSIVHWARSMIRKGDIISIIDPSLAEKVKIESIWRVAEVAIQCVEQHSSSRPRMQEIILAIQDAIKIEKGCDKI-TSGTSKSESSRRTLLTSFLDDIDSPELSDESLAPSAR 928
+ C + FL L+P+++ QVTEF+SIDCGGT NY D +TGL WISD+G + G R+ + S +YQTRRDFP D KKYCYTL T+ERRRY+VRATFLYG SA E T+PKF LYLDATKWSTVT+M+AS+V+VKEMIIRAPS SIDVCLC ATTGSPFISTLE+RPLNLSMYAT++ED+FYLKVA R+NFGA S + IRYPDDPYDRIW SDL++R NFLVGVAPGT RINTTK IN NTREYPP KVMQTAVVGT+G L+YRLNLEDFPANARAYAYFAEIEDLG ++RKF++EQPYMPDY NAVVNIAENANGSYTLYEPS+MN TL+FVLSFSFVKT+DSTRGPLLNA+EIS+YV+I KT+ +DV+ LN+LR S S W +E G DPC+PT WEWV+CSS PRITKI LSGK+V+G IP EL NM+GL ELWLDGNSF G IPD+S+L+NL++LHLENNKLTGPLP YLG+LP L+EL++ NNSL+G+IPS+LLKG + YEGNP L+ V K + ++++G++IG+LAIL +L I S+LLL R + K + Q N K +S RTS + +SIARGGSLM+E VAY+I +IEEAT +FSKQIGKGSFGPVYYGKMKDGKE+AVKIMADSSSHGT+QF+TE+ALLSRIHHRNLVPLIGYCEEE+Q MLVYEYMHNGTLRDH+HDS+NQK LDWLARLRIAEDAAKGLEYLH+GCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQ EED THISSVA+GTVGYLDP YYAN QLTEKSD+YSFG+VLLELISGRKP+S EE+G DWSIVHWARS+IRKGD+ SIIDP+L VK+ESIWR+AEVAIQCVEQHS SRPRMQEIILAIQDAIKIEKG DK+ +SG+SK++SSR+TLLTSFL DI SP++S+ SL PSAR
Sbjct: 1 MGCVSYFFLTCLCLIPSILSQVTEFISIDCGGTSNYIDNSTGLAWISDSGIMREGAPARIGDTYGNSLRYQTRRDFPTDSKKYCYTLNTQERRRYIVRATFLYGTSATEGTFPKFQLYLDATKWSTVTVMEASRVYVKEMIIRAPSQSIDVCLCCATTGSPFISTLEMRPLNLSMYATDYEDEFYLKVAQRINFGAPSQEDIRYPDDPYDRIWESDLDRRPNFLVGVAPGTERINTTKNINVNTREYPPVKVMQTAVVGTKGSLSYRLNLEDFPANARAYAYFAEIEDLGVNETRKFKMEQPYMPDYSNAVVNIAENANGSYTLYEPSYMNVTLEFVLSFSFVKTRDSTRGPLLNAMEISRYVEIGPKTDERDVSSLNALRVMSPQSEWTEEPG-DPCIPTNWEWVSCSSASPPRITKILLSGKNVKGEIPRELKNMEGLTELWLDGNSFNGTIPDMSDLVNLKILHLENNKLTGPLPSYLGNLPYLKELFIQNNSLSGEIPSSLLKGNLTFSYEGNPHLKRVNKTRY--KLVLGLSIGLLAILFVLSIISILLLRRSRAKSASQRNEKGNSWRTSMNHLTGYSIARGGSLMDESVAYYIPLSDIEEATNSFSKQIGKGSFGPVYYGKMKDGKEVAVKIMADSSSHGTKQFITEVALLSRIHHRNLVPLIGYCEEEHQRMLVYEYMHNGTLRDHIHDSNNQKHLDWLARLRIAEDAAKGLEYLHTGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQAEEDLTHISSVARGTVGYLDPEYYANQQLTEKSDVYSFGIVLLELISGRKPVSTEEYGSDWSIVHWARSLIRKGDVNSIIDPTLMGTVKVESIWRIAEVAIQCVEQHSFSRPRMQEIILAIQDAIKIEKGMDKLDSSGSSKAQSSRKTLLTSFL-DIQSPDISNGSLVPSAR 927
BLAST of XM_017367858.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6VDM9 ((probable LRR receptor-like serine/threonine-protein kinase At1g67720 {ECO:0000313|RefSeq:XP_027100087.1}))
HSP 1 Score: 1430.62 bits (3702), Expect = 0.000e+0
Identity = 684/928 (73.71%), Postives = 806/928 (86.85%), Query Frame = 0
Match: A0A6P6VDM9 ((probable LRR receptor-like serine/threonine-protein kinase At1g67720 {ECO:0000313|RefSeq:XP_027100087.1}))
HSP 1 Score: 1430.62 bits (3702), Expect = 0.000e+0
Identity = 684/928 (73.71%), Postives = 806/928 (86.85%), Query Frame = 0
Query: 4 SCYAILFLGLVPALMCQVTEFVSIDCGGTKNYTDLNTGLEWISDTGFINHGKSVRLENPDATSSQYQTRRDFPIDDKKYCYTLRTEERRRYLVRATFLYGNS-AENTYPKFWLYLDATKWSTVTIMDASKVHVKEMIIRAPSSSIDVCLCHATTGSPFISTLELRPLNLSMYATEFEDDFYLKVAARVNFGAASVQAIRYPDDPYDRIWSSDLEKRQNFLVGVAPGTRRINTTKYINTNTREYPPNKVMQTAVVGTRGRLTYRLNLEDFPANARAYAYFAEIEDLGTLDSRKFRIEQPYMPDYYNAVVNIAENANGSYTLYEPSFMNATLDFVLSFSFVKTQDSTRGPLLNAIEISKYVQIAKKTNMQDVNILNSLRAKSKDSNWVDEDGGDPCLPTPWEWVTCSSDIQPRITKIALSGKDVEGNIPPELNNMDGLIELWLDGNSFQGPIPDISNLINLQVLHLENNKLTGPLPPYLGSLPSLRELYVDNNSLTGDIPSALLKGKVKLGYEGNPGLRNVTKHKRNRRVIVGVAIGVLAILLLLLIGSLLLLCRLQKKRS-HQNNAKSDSLRTSTKRSSAFSIARGGSLMEEGVAYHITFCEIEEATKNFSKQIGKGSFGPVYYGKMKDGKEIAVKIMADSSSHGTRQFVTEIALLSRIHHRNLVPLIGYCEEENQSMLVYEYMHNGTLRDHMHDSSNQKQLDWLARLRIAEDAAKGLEYLHSGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQTEEDQTHISSVAQGTVGYLDPGYYANHQLTEKSDIYSFGVVLLELISGRKPISAEEFGLDWSIVHWARSMIRKGDIISIIDPSLAEKVKIESIWRVAEVAIQCVEQHSSSRPRMQEIILAIQDAIKIEKGCDKITS-GTSKSESSRRTLLTSFLDDIDSPELSDESLAPSAR 928
S + + F+ L PA++CQVTEF+SIDCGG K++TD +TGL W SDTG + HGKSV ++N + QY TRR+FPID+KKYCYTL+TEERRRY+VRATFLYG+S E YPKF L+LDATKWSTV++ D S+V+VKEMI+RAPS SIDVCLC ATTG PFIST+ELRPLNLSMYAT++EDDFYLKVAARVNFGA S IRYPDDPYDRIW SDL KRQN+LVGVAPGT RI+T KY++TNTREYPP KVMQTAVVGT GRL+YRLNLEDFPANARAYAYFAEI+DL ++RKFR+EQPY DY NA+VNIAENANGSYTLYEPS+MN TLDFVLSFSFV+T+DS+RGPLLNAIEIS+YVQIA KT+ +DV+ LN +R+ S +S+W DE G DPC+PTPWEWV CS + PRIT I LSGK+V+G IP +L NM+GL ELWLDGN F GPIPD+SNL+NL++LHLENNKLTGP+P Y+GSLPSL+E+YV NNSL+G+IP++LL GK YEGN LR K KR+ ++++G+++G+LAIL +L +GSLLLL ++ KRS H+ + K +SLR STK S+ +SI RGGSLM+E VA + + EIEEAT FS++IGKGSFGPVYYGK+KDGKE+AVKIMADSSSHGTRQFVTE+ALLSRIHHRNLVPLIGYCEEE+Q MLVYEYMHNGTLRDH++ S ++K LDWLARL+IAEDAAKGLEYLH+GCNP+IIHRDVKTSNILLD NMRAKVSDFGLSRQ EED THISSVA+GTVGYLDP YYAN QLTEKSD+YSFGVVLLELISGRKP+S EE+G +WSIVHWARS++RKGD+ISI+D +L VK+ES+WR+AEVAIQCVEQH SSRPRMQEIILAIQDAIKIEKG DK++S G+SK +SSR+TLLTSFL DI+SP+LS +SL PSAR
Sbjct: 5 SQFILFFVCLTPAIVCQVTEFISIDCGGDKSFTDPSTGLVWNSDTGIMAHGKSVEVKNTNGNPLQYSTRREFPIDNKKYCYTLKTEERRRYIVRATFLYGSSETEEPYPKFQLFLDATKWSTVSVADDSRVYVKEMIVRAPSYSIDVCLCCATTGFPFISTIELRPLNLSMYATDYEDDFYLKVAARVNFGALSKDDIRYPDDPYDRIWESDLAKRQNYLVGVAPGTERISTAKYVDTNTREYPPVKVMQTAVVGTMGRLSYRLNLEDFPANARAYAYFAEIQDLAENETRKFRMEQPYT-DYSNAIVNIAENANGSYTLYEPSYMNVTLDFVLSFSFVETRDSSRGPLLNAIEISRYVQIAAKTDDKDVSTLNVIRSMSTESDWTDEQG-DPCIPTPWEWVNCSDTVPPRITIIFLSGKNVKGEIPSDLKNMEGLTELWLDGNFFTGPIPDLSNLVNLKILHLENNKLTGPVPSYIGSLPSLKEIYVQNNSLSGEIPASLLTGKQIFRYEGNAHLRRGEKSKRHYKLVLGISVGLLAILFVLFMGSLLLLRYIRVKRSYHKFDDKGNSLRNSTKPSTHYSITRGGSLMDERVACYFSSTEIEEATDRFSRKIGKGSFGPVYYGKLKDGKEVAVKIMADSSSHGTRQFVTEVALLSRIHHRNLVPLIGYCEEEHQRMLVYEYMHNGTLRDHINGSDHEKHLDWLARLQIAEDAAKGLEYLHTGCNPTIIHRDVKTSNILLDNNMRAKVSDFGLSRQAEEDLTHISSVARGTVGYLDPEYYANQQLTEKSDVYSFGVVLLELISGRKPVSFEEYGTEWSIVHWARSLVRKGDVISIVDSTLLGMVKMESVWRIAEVAIQCVEQHGSSRPRMQEIILAIQDAIKIEKGTDKLSSAGSSKGQSSRKTLLTSFL-DIESPDLSKDSLVPSAR 929
BLAST of XM_017367858.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9GW84 ((Serine/threonine protein kinase {ECO:0000313|EMBL:PIN09538.1}) (2.7.11.1 {ECO:0000313|EMBL:PIN09538.1}))
HSP 1 Score: 1427.92 bits (3695), Expect = 0.000e+0
Identity = 692/931 (74.33%), Postives = 802/931 (86.14%), Query Frame = 0
Match: A0A2G9GW84 ((Serine/threonine protein kinase {ECO:0000313|EMBL:PIN09538.1}) (2.7.11.1 {ECO:0000313|EMBL:PIN09538.1}))
HSP 1 Score: 1427.92 bits (3695), Expect = 0.000e+0
Identity = 692/931 (74.33%), Postives = 802/931 (86.14%), Query Frame = 0
Query: 3 LSCYAILFLG---LVPALMCQVTEFVSIDCGGTKNYTDLNTGLEWISDTGFINHGKSVRLENPDATSSQYQTRRDFPIDDKKYCYTLRTEERRRYLVRATFLYGNSA-ENTYPKFWLYLDATKWSTVTIMDASKVHVKEMIIRAPSSSIDVCLCHATTGSPFISTLELRPLNLSMYATEFEDDFYLKVAARVNFGAASVQAIRYPDDPYDRIWSSDLEKRQNFLVGVAPGTRRINTTKYINTNTREYPPNKVMQTAVVGTRGRLTYRLNLEDFPANARAYAYFAEIEDLGTLDSRKFRIEQPYMPDYYNAVVNIAENANGSYTLYEPSFMNATLDFVLSFSFVKTQDSTRGPLLNAIEISKYVQIAKKTNMQDVNILNSLRAKSKDSNWVDEDGGDPCLPTPWEWVTCSSDIQPRITKIALSGKDVEGNIPPELNNMDGLIELWLDGNSFQGPIPDISNLINLQVLHLENNKLTGPLPPYLGSLPSLRELYVDNNSLTGDIPSALLKGKVKLGYEGNPGLRNVTKHKRNRRVIVGVAIGVLAILLLLLIGSLLLLCRLQKKRSHQNNAKSDSLRTSTKRSSAFSIARGGSLMEEGVAYHITFCEIEEATKNFSKQIGKGSFGPVYYGKMKDGKEIAVKIMADSSSHGTRQFVTEIALLSRIHHRNLVPLIGYCEEENQSMLVYEYMHNGTLRDHMHDSSNQKQLDWLARLRIAEDAAKGLEYLHSGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQTEEDQTHISSVAQGTVGYLDPGYYANHQLTEKSDIYSFGVVLLELISGRKPISAEEFGLDWSIVHWARSMIRKGDIISIIDPSLAEKVKIESIWRVAEVAIQCVEQHSSSRPRMQEIILAIQDAIKIEKGCDKI-TSGTSKSESSRRTLLTSFLDDIDSPELSDESLAPSAR 928
+ C + FL L+P+++ QVTEF+SIDCGGT NY D +TGL WISD+G + G R+ + S +YQTRRDFP D KKYCYTL T+ERRRY+VRATFLYG SA E T+PKF LYLDATKWSTVT+M+AS+V+VKEMIIRAPS SIDVCLC ATTGSPFISTLE+RPLNLSMYAT++ED+FYLKVA R+NFGA S + IRYPDDPYDRIW SDL++R NFLVGVAPGT RINTTK IN NTREYPP KVMQTAVVGT+G L+YRLNLEDFPANARAYAYFAEIEDLG ++RKF++EQPYMPDY NAVVNIAENA GSYTLYEP +MN TL+FVLSFSFVKT+DSTRGPLLNA+EIS+YV+I KT+ +DV+ LN+LR S S W +E G DPC+PT WEWV+CSS PRITKI LSGK+V+G IP EL NM+GL ELWLDGNSF G IPD+S+L+NL++LHLENNKLTGPLP YLG+LP L+EL++ NNSL+G+IPS+LLKG + YEGNP L+ V K + ++++G++IG+LAIL +L I S+LLL R + K + Q N K +S RTS + +SIARGGSLM+E VAY+I +IEEAT +FSKQIGKGSFGPVYYGKMKDGKE+AVKIMADSSSHGT+QF+TE+ALLSRIHHRNLVPLIGYCEEE+Q MLVYEYMHNGTLRDH+HDS+NQK LDWLARLRIAEDAAKGLEYLH+GCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQ EED THISSVA+GTVGYLDP YYAN QLTEKSD+YSFG+VLLELISGRKP+S EE+G DWSIVHWARS+IRKGD+ SIIDP+L VK+ESIWR+AEVAIQCVEQHS SRPRMQEIILAIQDAIKIEKG DK+ +SG+SK++SSR+TLLTSFL DI SP++S+ SL PSAR
Sbjct: 1 MGCVSYFFLTCLCLIPSILSQVTEFISIDCGGTSNYIDNSTGLAWISDSGIMREGAPARIGDTYGNSLRYQTRRDFPTDSKKYCYTLSTQERRRYIVRATFLYGTSATEGTFPKFQLYLDATKWSTVTVMEASRVYVKEMIIRAPSQSIDVCLCCATTGSPFISTLEMRPLNLSMYATDYEDEFYLKVAQRINFGAPSQEDIRYPDDPYDRIWESDLDRRPNFLVGVAPGTERINTTKNINVNTREYPPVKVMQTAVVGTKGSLSYRLNLEDFPANARAYAYFAEIEDLGVNETRKFKMEQPYMPDYSNAVVNIAENAKGSYTLYEPRYMNVTLEFVLSFSFVKTRDSTRGPLLNAMEISRYVEIGPKTDKRDVSSLNALRVMSPQSEWTEEPG-DPCIPTNWEWVSCSSASPPRITKILLSGKNVKGEIPRELKNMEGLTELWLDGNSFNGTIPDMSDLVNLKILHLENNKLTGPLPSYLGNLPYLKELFIQNNSLSGEIPSSLLKGNLTFSYEGNPHLKRVNKTRY--KLVLGLSIGLLAILFVLSIISILLLRRSRAKSASQRNEKGNSWRTSMNHLTGYSIARGGSLMDESVAYYIPLSDIEEATNSFSKQIGKGSFGPVYYGKMKDGKEVAVKIMADSSSHGTKQFITEVALLSRIHHRNLVPLIGYCEEEHQRMLVYEYMHNGTLRDHIHDSNNQKHLDWLARLRIAEDAAKGLEYLHTGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQAEEDLTHISSVARGTVGYLDPEYYANQQLTEKSDVYSFGIVLLELISGRKPVSTEEYGSDWSIVHWARSLIRKGDVNSIIDPTLMGTVKVESIWRIAEVAIQCVEQHSFSRPRMQEIILAIQDAIKIEKGMDKLDSSGSSKAQSSRKTLLTSFL-DIQSPDISNGSLVPSAR 927
BLAST of XM_017367858.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6V1T6 ((probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X3 {ECO:0000313|RefSeq:XP_027097034.1}))
HSP 1 Score: 1426.77 bits (3692), Expect = 0.000e+0
Identity = 682/928 (73.49%), Postives = 805/928 (86.75%), Query Frame = 0
Match: A0A6P6V1T6 ((probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X3 {ECO:0000313|RefSeq:XP_027097034.1}))
HSP 1 Score: 1426.77 bits (3692), Expect = 0.000e+0
Identity = 682/928 (73.49%), Postives = 805/928 (86.75%), Query Frame = 0
Query: 4 SCYAILFLGLVPALMCQVTEFVSIDCGGTKNYTDLNTGLEWISDTGFINHGKSVRLENPDATSSQYQTRRDFPIDDKKYCYTLRTEERRRYLVRATFLYGNS-AENTYPKFWLYLDATKWSTVTIMDASKVHVKEMIIRAPSSSIDVCLCHATTGSPFISTLELRPLNLSMYATEFEDDFYLKVAARVNFGAASVQAIRYPDDPYDRIWSSDLEKRQNFLVGVAPGTRRINTTKYINTNTREYPPNKVMQTAVVGTRGRLTYRLNLEDFPANARAYAYFAEIEDLGTLDSRKFRIEQPYMPDYYNAVVNIAENANGSYTLYEPSFMNATLDFVLSFSFVKTQDSTRGPLLNAIEISKYVQIAKKTNMQDVNILNSLRAKSKDSNWVDEDGGDPCLPTPWEWVTCSSDIQPRITKIALSGKDVEGNIPPELNNMDGLIELWLDGNSFQGPIPDISNLINLQVLHLENNKLTGPLPPYLGSLPSLRELYVDNNSLTGDIPSALLKGKVKLGYEGNPGLRNVTKHKRNRRVIVGVAIGVLAILLLLLIGSLLLLCRLQKKRS-HQNNAKSDSLRTSTKRSSAFSIARGGSLMEEGVAYHITFCEIEEATKNFSKQIGKGSFGPVYYGKMKDGKEIAVKIMADSSSHGTRQFVTEIALLSRIHHRNLVPLIGYCEEENQSMLVYEYMHNGTLRDHMHDSSNQKQLDWLARLRIAEDAAKGLEYLHSGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQTEEDQTHISSVAQGTVGYLDPGYYANHQLTEKSDIYSFGVVLLELISGRKPISAEEFGLDWSIVHWARSMIRKGDIISIIDPSLAEKVKIESIWRVAEVAIQCVEQHSSSRPRMQEIILAIQDAIKIEKGCDKITS-GTSKSESSRRTLLTSFLDDIDSPELSDESLAPSAR 928
S + + F+ L PA++CQVTEF+SIDCGG K++TD +TGL W SDTG + HGKSV ++N + QY TRR+FPID+KKYCYTL+TEERRRY+VRATFLYG+S E YPKF L+LDATKWSTV++ D S+V+VKEMI+RAPS SIDVCLC ATTG PFIST+ELRPLNLSMYAT++EDDFYLKVAARVNFGA S + IRYPDDPYDRIW SDL KRQN+LVGVAPGT RI+T KY++TNTREYPP KVMQTAVVGT GRL+YRLNLEDFPANARAYAYFAEI+DL ++RKFR+EQPY DY NA+VNIAENANGSYTLYEPS+MN TLDFVLSFSFV+T+DS+RGPLLNAIEIS+YV+IA KT+ +DV+ LN +R+ S +S+W DE G DPC+P PWEWV CS + PRIT I LSGK+V+G IP EL NM+GL ELWLDGN F GPIPD+SNL+NL+++HLENNKLTGP+P Y+GSLPSL+E+YV NNSL+G+IP++LL GK YEGN LR K KR+ ++++G+++G+LAIL +L +GSLLLL ++ KRS H+ + K +SLR STK S+ SI RGGSLM+E VA + + EIEEAT FS++IGKGSFGPVYYGK+KDGKE+AVKIMADSSSHGTRQFVTE+ALLSRIHHRNLVPLIGYCEEE+Q MLVYEYMHNGTLRDH++ S ++K LDWLARL+IAEDAAKGLEYLH+GCNP+IIHRDVKTSNILLD NMRAKVSDFGLSRQ EED THISSVA+GTVGYLDP YYAN QLTEKSD+YSFGVVLLELISGRKP+S EE+G +WSIVHWARS++RKGD+ISI+D +L VK+ES+WR+AEVAIQCVEQH SSRPRMQEIILAIQDAIKIEKG DK++S G+SK +SSR+TLLTSFL DI+SP+LS +SL PSAR
Sbjct: 5 SQFFLFFVCLTPAIVCQVTEFISIDCGGNKSFTDPSTGLVWNSDTGIMAHGKSVEVKNTNGNPLQYSTRREFPIDNKKYCYTLKTEERRRYIVRATFLYGSSETEEPYPKFQLFLDATKWSTVSVSDDSRVYVKEMIVRAPSYSIDVCLCCATTGFPFISTIELRPLNLSMYATDYEDDFYLKVAARVNFGALSKEDIRYPDDPYDRIWESDLAKRQNYLVGVAPGTERISTAKYVDTNTREYPPVKVMQTAVVGTMGRLSYRLNLEDFPANARAYAYFAEIQDLAENETRKFRMEQPYT-DYSNAIVNIAENANGSYTLYEPSYMNVTLDFVLSFSFVETRDSSRGPLLNAIEISRYVEIAAKTDDKDVSTLNVIRSMSTESDWTDEQG-DPCIPMPWEWVNCSDTVPPRITIIFLSGKNVKGEIPSELKNMEGLTELWLDGNFFTGPIPDLSNLVNLKIVHLENNKLTGPVPSYIGSLPSLKEIYVQNNSLSGEIPASLLTGKQIFRYEGNAHLRRGEKSKRHYKLVLGISVGLLAILFVLFMGSLLLLRYIRVKRSYHKFDDKGNSLRNSTKPSTHSSITRGGSLMDERVACYFSSTEIEEATDRFSRKIGKGSFGPVYYGKLKDGKEVAVKIMADSSSHGTRQFVTEVALLSRIHHRNLVPLIGYCEEEHQRMLVYEYMHNGTLRDHINGSDHEKHLDWLARLQIAEDAAKGLEYLHTGCNPTIIHRDVKTSNILLDNNMRAKVSDFGLSRQAEEDLTHISSVARGTVGYLDPEYYANQQLTEKSDVYSFGVVLLELISGRKPVSFEEYGTEWSIVHWARSLVRKGDVISIVDSTLLGTVKMESVWRIAEVAIQCVEQHGSSRPRMQEIILAIQDAIKIEKGTDKLSSAGSSKGQSSRKTLLTSFL-DIESPDLSKDSLVPSAR 929
BLAST of XM_017367858.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068UXN3 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 1426.38 bits (3691), Expect = 0.000e+0
Identity = 682/928 (73.49%), Postives = 804/928 (86.64%), Query Frame = 0
Match: A0A068UXN3 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 1426.38 bits (3691), Expect = 0.000e+0
Identity = 682/928 (73.49%), Postives = 804/928 (86.64%), Query Frame = 0
Query: 4 SCYAILFLGLVPALMCQVTEFVSIDCGGTKNYTDLNTGLEWISDTGFINHGKSVRLENPDATSSQYQTRRDFPIDDKKYCYTLRTEERRRYLVRATFLYGNS-AENTYPKFWLYLDATKWSTVTIMDASKVHVKEMIIRAPSSSIDVCLCHATTGSPFISTLELRPLNLSMYATEFEDDFYLKVAARVNFGAASVQAIRYPDDPYDRIWSSDLEKRQNFLVGVAPGTRRINTTKYINTNTREYPPNKVMQTAVVGTRGRLTYRLNLEDFPANARAYAYFAEIEDLGTLDSRKFRIEQPYMPDYYNAVVNIAENANGSYTLYEPSFMNATLDFVLSFSFVKTQDSTRGPLLNAIEISKYVQIAKKTNMQDVNILNSLRAKSKDSNWVDEDGGDPCLPTPWEWVTCSSDIQPRITKIALSGKDVEGNIPPELNNMDGLIELWLDGNSFQGPIPDISNLINLQVLHLENNKLTGPLPPYLGSLPSLRELYVDNNSLTGDIPSALLKGKVKLGYEGNPGLRNVTKHKRNRRVIVGVAIGVLAILLLLLIGSLLLLCRLQKKRS-HQNNAKSDSLRTSTKRSSAFSIARGGSLMEEGVAYHITFCEIEEATKNFSKQIGKGSFGPVYYGKMKDGKEIAVKIMADSSSHGTRQFVTEIALLSRIHHRNLVPLIGYCEEENQSMLVYEYMHNGTLRDHMHDSSNQKQLDWLARLRIAEDAAKGLEYLHSGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQTEEDQTHISSVAQGTVGYLDPGYYANHQLTEKSDIYSFGVVLLELISGRKPISAEEFGLDWSIVHWARSMIRKGDIISIIDPSLAEKVKIESIWRVAEVAIQCVEQHSSSRPRMQEIILAIQDAIKIEKGCDKITS-GTSKSESSRRTLLTSFLDDIDSPELSDESLAPSAR 928
S + + F+ L PA++CQVTEF+SIDCGG K++TD +TGL W SDTG + HGKSV ++N QY TRR+FPID+KKYCYTL+TEERRRY+VRATFLYG+S E YPKF L+LDATKWSTV++ D S+V+VKEMI+RAPS SIDVCLC ATTG PFIST+ELRPLNLSMYAT++EDDFYLKVAARVNFGA S + IRYPDDPYDRIW SDL KRQN+LVGVAPGT RI+T KY++TNTREYPP KVMQTAVVGT GRL+YRLNLEDFPANARAYAYFAEI+DL ++RKFR+EQPY DY NA+VNIAENANGSYTLYEPS+MN TLDFVLSFSFV+T+DS+RGPLLNAIEIS+YV+IA KT+ +DV+ LN +R+ S +S+W DE G DPC+P PWEWV CS + PRIT I LSGK+V+G IP EL NM+GL ELWLDGN F GPIPD+SNL+NL+++HLENNKLTGP+P Y+GSLPSL+E+YV NNSL+G+IP++LL GK YEGN LR K KR+ ++++G+++G+LAIL +L +GSLLLL ++ KRS H+ + K +SLR STK S+ SI RGGSLM+E VA + + EIEEAT FS++IGKGSFGPVYYGK+KDGKE+AVKIMADSSSHGTRQFVTE+ALLSRIHHRNLVPLIGYCEEE+Q MLVYEYMHNGTLRDH++ S ++K LDWLARL+IAEDAAKGLEYLH+GCNP+IIHRDVKTSNILLD NMRAKVSDFGLSRQ EED THISSVA+GTVGYLDP YYAN QLTEKSD+YSFGVVLLELISGRKP+S EE+G +WSIVHWARS++RKGD+ISI+D +L VK+ES+WR+AEVAIQCVEQH SSRPRMQEIILAIQDAIKIEKG DK++S G+SK +SSR+TLLTSFL DI+SP+LS +SL PSAR
Sbjct: 5 SQFILFFVCLTPAIVCQVTEFISIDCGGNKSFTDPSTGLVWNSDTGIMAHGKSVEVKNTSGNPLQYSTRREFPIDNKKYCYTLKTEERRRYIVRATFLYGSSETEEPYPKFQLFLDATKWSTVSVSDDSRVYVKEMIVRAPSYSIDVCLCCATTGFPFISTIELRPLNLSMYATDYEDDFYLKVAARVNFGALSKEDIRYPDDPYDRIWESDLAKRQNYLVGVAPGTERISTAKYVDTNTREYPPVKVMQTAVVGTMGRLSYRLNLEDFPANARAYAYFAEIQDLAENETRKFRMEQPYT-DYSNAIVNIAENANGSYTLYEPSYMNVTLDFVLSFSFVETRDSSRGPLLNAIEISRYVEIAAKTDDKDVSTLNVIRSMSTESDWTDEQG-DPCIPMPWEWVNCSDTVPPRITIIFLSGKNVKGEIPSELKNMEGLTELWLDGNFFTGPIPDLSNLVNLKIVHLENNKLTGPVPSYIGSLPSLKEIYVQNNSLSGEIPASLLTGKQIFRYEGNAHLRRGEKSKRHYKLVLGISVGLLAILFVLFMGSLLLLRYIRVKRSYHKFDDKGNSLRNSTKPSTHSSITRGGSLMDERVACYFSSTEIEEATDRFSRKIGKGSFGPVYYGKLKDGKEVAVKIMADSSSHGTRQFVTEVALLSRIHHRNLVPLIGYCEEEHQRMLVYEYMHNGTLRDHINGSDHEKHLDWLARLQIAEDAAKGLEYLHTGCNPTIIHRDVKTSNILLDNNMRAKVSDFGLSRQAEEDLTHISSVARGTVGYLDPEYYANQQLTEKSDVYSFGVVLLELISGRKPVSFEEYGTEWSIVHWARSLVRKGDVISIVDSTLLGTVKMESVWRIAEVAIQCVEQHGSSRPRMQEIILAIQDAIKIEKGTDKLSSAGSSKGQSSRKTLLTSFL-DIESPDLSKDSLVPSAR 929
BLAST of XM_017367858.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AED4 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 1425.99 bits (3690), Expect = 0.000e+0
Identity = 704/917 (76.77%), Postives = 799/917 (87.13%), Query Frame = 0
Match: A0A5B7AED4 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 1425.99 bits (3690), Expect = 0.000e+0
Identity = 704/917 (76.77%), Postives = 799/917 (87.13%), Query Frame = 0
Query: 14 VPALMCQVTEFVSIDCGGTKNYTDLNTGLEWISDTGFINHGKSVRLENPDATSSQYQTRRDFPIDDKKYCYTLRTEERRRYLVRATFLYGNSAE-NTYPKFWLYLDATKWSTVTIMDASKVHVKEMIIRAPSSSIDVCLCHATTGSPFISTLELRPLNLSMYATEFEDDFYLKVAARVNFGAASVQAIRYPDDPYDRIWSSDLEKRQNFLVGVAPGTRRINTTKYINTNTREYPPNKVMQTAVVGTRGRLTYRLNLEDFPANARAYAYFAEIEDLGTLDSRKFRIEQPYMPDYYNAVVNIAENANGSYTLYEPSFMNATLDFVLSFSFVKTQDSTRGPLLNAIEISKYVQIAKKTNMQDVNILNSLRAKSKDSNWVDEDGGDPCLPTPWEWVTCSSDIQPRITKIALSGKDVEGNIPPELNNMDGLIELWLDGNSFQGPIPDISNLINLQVLHLENNKLTGPLPPYLGSLPSLRELYVDNNSLTGDIPSALLKGKVKLGYEGNPGLRNVTKHKRNRRVIVGVAIGVLAILLLLLIGSLLLLCRLQKKRSHQ-NNAKSDSLRTSTKRSSAFSIARGGSLMEEGVAYHITFCEIEEATKNFSKQIGKGSFGPVYYGKMKDGKEIAVKIMADSSSHGTRQFVTEIALLSRIHHRNLVPLIGYCEEENQSMLVYEYMHNGTLRDHMHDSSNQKQLDWLARLRIAEDAAKGLEYLHSGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQTEEDQTHISSVAQGTVGYLDPGYYANHQLTEKSDIYSFGVVLLELISGRKPISAEEFGLDWSIVHWARSMIRKGDIISIIDPSLAEKVKIESIWRVAEVAIQCVEQHSSSRPRMQEIILAIQDAIKIEKGCDKITSGTSKSESSRRTLLTSFLDDIDSPELSDESLAPSAR 928
+P+ +CQV EF+SIDCGGT NYTD +TGL WISD G ++HGKSV +EN + SQY+ RRDFP D KKYCYTL TEERRRYLVRATFLYG+S +TYPKF LYLDATKWSTVT++DAS+V+VKEMIIRAPS+SIDVCLC A TGSPFISTLELR LNLSMYAT+FED+FYLKVAARVNFGA S +AIRYPDDPYDRIW SDL+KRQN+LVGVAPGT RINTTK IN TREYPP KVMQTAVVGT+G L+YRLNLEDFPANARAYAYFAEIEDLG ++RKF++ QPY+PDY NAVVNIAENANGSYTLYEPS+MN TLDFVL+FSFVKT DST+GPLLNAIEISKYV+IA KT+ QDVN+LN+L ++S S W G DPC+P W+WVTCSS + PRITKI LSGK++ G IP EL NM+GL ELWLDGNS G IPD+S+LINL+++HLENNKLTGPLP YLGSLPSL+ELYV NSL+G+IP ALL G+V YEGNPGL KHK + ++I+G ++GV+AILL+LL+GSLLLL L++K S+Q ++ + DSLRTS K S+A SI RGG LM+EGVAY+I EIEEAT NFSK+IGKGSFGPVYYG+MK+GKE+AVKIMADSSSHGT+QFVTE+ALLSRIHHRNLVPLIGYCEEE+Q MLVYEYMHNGTLRDH+HDS+NQK LDWLARL IAEDAAKGLEYLH+GCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQTEEDQTHISSVA+GTVGYLDP YYAN QLTEKSD+YSFGVVLLELISGRKP+S E++G +W+IVHWARS+IRKGD+ISIIDP LA VKIESIWR+AEVAIQCVEQH SRPRMQEIIL IQD IKIEKG DK SK +SSR+TLLTSFL DI+SP+LS L PSAR
Sbjct: 15 IPSTVCQVKEFISIDCGGTSNYTDPSTGLAWISDAGMMSHGKSVEVENSNGELSQYRRRRDFPTDSKKYCYTLSTEERRRYLVRATFLYGSSVNVDTYPKFQLYLDATKWSTVTVLDASRVYVKEMIIRAPSNSIDVCLCCAITGSPFISTLELRHLNLSMYATDFEDNFYLKVAARVNFGAQSTEAIRYPDDPYDRIWDSDLDKRQNYLVGVAPGTERINTTKNINIKTREYPPVKVMQTAVVGTKGTLSYRLNLEDFPANARAYAYFAEIEDLGVNETRKFKMRQPYLPDYSNAVVNIAENANGSYTLYEPSYMNVTLDFVLTFSFVKTPDSTQGPLLNAIEISKYVEIASKTDGQDVNVLNTLSSQSAGSVWTS--GSDPCVPAHWDWVTCSSTLPPRITKILLSGKNINGKIPSELKNMEGLTELWLDGNSLTGSIPDMSSLINLKIVHLENNKLTGPLPSYLGSLPSLQELYVQENSLSGEIPPALLTGRVIFKYEGNPGLSQRAKHKTHYKLILGTSVGVVAILLVLLLGSLLLLHNLRRKTSYQKSDDRGDSLRTSNKPSTAPSIPRGGHLMDEGVAYYIPLSEIEEATNNFSKKIGKGSFGPVYYGRMKEGKEVAVKIMADSSSHGTQQFVTEVALLSRIHHRNLVPLIGYCEEEHQRMLVYEYMHNGTLRDHIHDSANQKHLDWLARLYIAEDAAKGLEYLHTGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQTEEDQTHISSVARGTVGYLDPEYYANQQLTEKSDVYSFGVVLLELISGRKPVSTEDYGTEWNIVHWARSLIRKGDVISIIDPCLAGSVKIESIWRIAEVAIQCVEQHGVSRPRMQEIILVIQDVIKIEKGSDK----CSKGQSSRKTLLTSFL-DIESPDLSTGCLQPSAR 924
BLAST of XM_017367858.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1J6K852 ((Putative lrr receptor-like serinethreonine-protein kinase {ECO:0000313|EMBL:OIT21192.1}))
HSP 1 Score: 1416.75 bits (3666), Expect = 0.000e+0
Identity = 676/917 (73.72%), Postives = 795/917 (86.70%), Query Frame = 0
Match: A0A1J6K852 ((Putative lrr receptor-like serinethreonine-protein kinase {ECO:0000313|EMBL:OIT21192.1}))
HSP 1 Score: 1416.75 bits (3666), Expect = 0.000e+0
Identity = 676/917 (73.72%), Postives = 795/917 (86.70%), Query Frame = 0
Query: 15 PALMCQVTEFVSIDCGGTKNYTDLNTGLEWISDTGFINHGKSVRLENPDATSSQYQTRRDFPIDDKKYCYTLRTEERRRYLVRATFLYGN-SAENTYPKFWLYLDATKWSTVTIMDASKVHVKEMIIRAPSSSIDVCLCHATTGSPFISTLELRPLNLSMYATEFEDDFYLKVAARVNFGAASVQAIRYPDDPYDRIWSSDLEKRQNFLVGVAPGTRRINTTKYINTNTREYPPNKVMQTAVVGTRGRLTYRLNLEDFPANARAYAYFAEIEDLGTLDSRKFRIEQPYMPDYYNAVVNIAENANGSYTLYEPSFMNATLDFVLSFSFVKTQDSTRGPLLNAIEISKYVQIAKKTNMQDVNILNSLRAKSKDSNWVDEDGGDPCLPTPWEWVTCSSDIQPRITKIALSGKDVEGNIPPELNNMDGLIELWLDGNSFQGPIPDISNLINLQVLHLENNKLTGPLPPYLGSLPSLRELYVDNNSLTGDIPSALLKGKVKLGYEGNPGLRNVTKHKRNRRVIVGVAIGVLAILLLLLIGSLLLLCRLQKKRSHQN-NAKSDSLRTSTKRSSAFSIARGGSLMEEGVAYHITFCEIEEATKNFSKQIGKGSFGPVYYGKMKDGKEIAVKIMADSSSHGTRQFVTEIALLSRIHHRNLVPLIGYCEEENQSMLVYEYMHNGTLRDHMHDSSNQKQLDWLARLRIAEDAAKGLEYLHSGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQTEEDQTHISSVAQGTVGYLDPGYYANHQLTEKSDIYSFGVVLLELISGRKPISAEEFGLDWSIVHWARSMIRKGDIISIIDPSLAEKVKIESIWRVAEVAIQCVEQHSSSRPRMQEIILAIQDAIKIEKGCDKI-TSGTSKSESSRRTLLTSFLDDIDSPELSDESLAPSAR 928
PA++CQVTEFVSIDCG NYTD +TGL W +D G + +GK V + N D S QYQ RRDFP D KKYCYTL T+ERRRYLVRATFLYG+ +AE TYPKF LYLD TKW+T+TI ++S+++VKEMIIRAPS+SIDVCLC ATT SPFISTLELRPLNLSMYAT++ED+FYLKVAARV+FGA S + IRYPDDPYDRIW SDLEKR NFLV VA GT RINTTKYINTNTREYPP KVMQTAVVGT+G L+YRLNL+DFPANARA+AYFAEIEDLG ++RKF++E PY+PDY NAVVNIAENANGSYTLYEPS+MN TLDF+LSFSFVKT+DSTRGPLL+A+EI +Y QIA KT+ QDV LN+ R+ S S+W DEDG DPC+P WEWVTCS+ I PRITKI LSGK+V+G IPPELN+M+GL ELWLDGNS G IPD+SNL+NL+ +HLE+NKLTGP+P YLG LPSL EL V NNSLTG+IP +LLKGKV YEGNP LR +KH + +VI+GV++G + +L +L+ S+L LC + K SHQ + K +SLR STK S+ +SIARGGSLM+EGVAY+I EIEEAT+NFSK+IGKGSFGPVYYG+++DGKE+AVK MADSSSHGT+QF TE+ALLSRIHHRNLVPLIGY E+++Q MLVYEYMHNGTLRDH+++S++QK LDWLARL IAEDAAKGLEYLH+GCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQ EED TH+SSVA+GTVGYLDP YYAN QLTEKSD+YSFGVVLLELISGR+P+S EE+G +WSIVHWARS+IRKGD+ISI+DP+L +VK+ES+WR+AEVAIQCVE+H SSRPRM EI+ AIQDAIKIEKG DK+ +SG+S+++SSR+TLLTSFL DI+SP++S+ SL PSAR
Sbjct: 16 PAIVCQVTEFVSIDCGSATNYTDPSTGLAWTTDAGIMRNGKPVVVVNADVNSQQYQRRRDFPADSKKYCYTLNTKERRRYLVRATFLYGSPAAEGTYPKFQLYLDTTKWATITISESSRIYVKEMIIRAPSNSIDVCLCCATTESPFISTLELRPLNLSMYATDYEDNFYLKVAARVDFGAQSNEPIRYPDDPYDRIWDSDLEKRPNFLVDVAAGTERINTTKYINTNTREYPPVKVMQTAVVGTKGMLSYRLNLDDFPANARAFAYFAEIEDLGINETRKFKMEHPYVPDYSNAVVNIAENANGSYTLYEPSYMNITLDFILSFSFVKTRDSTRGPLLSAMEICRYAQIAAKTDEQDVTTLNAFRSMSLGSDWTDEDG-DPCIPAQWEWVTCSTTIPPRITKITLSGKNVKGEIPPELNHMEGLTELWLDGNSLTGSIPDLSNLVNLRTIHLEDNKLTGPIPSYLGGLPSLIELDVQNNSLTGEIPPSLLKGKVTFKYEGNPNLRPESKHNKRHKVILGVSVGAVVLLFVLITVSILFLCHFRTKVSHQKGDTKGESLRRSTKASTTYSIARGGSLMDEGVAYYIPLSEIEEATENFSKKIGKGSFGPVYYGRLRDGKEVAVKTMADSSSHGTKQFATEVALLSRIHHRNLVPLIGYFEDDHQRMLVYEYMHNGTLRDHINESTSQKHLDWLARLHIAEDAAKGLEYLHTGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQAEEDLTHVSSVARGTVGYLDPEYYANQQLTEKSDVYSFGVVLLELISGRRPVSTEEYGAEWSIVHWARSLIRKGDVISIMDPALVGRVKVESVWRIAEVAIQCVERHGSSRPRMHEILSAIQDAIKIEKGIDKLSSSGSSRAQSSRKTLLTSFL-DIESPDISNSSLTPSAR 930
BLAST of XM_017367858.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7VD03 ((probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X1 {ECO:0000313|RefSeq:XP_009764238.1}))
HSP 1 Score: 1413.28 bits (3657), Expect = 0.000e+0
Identity = 676/917 (73.72%), Postives = 794/917 (86.59%), Query Frame = 0
Match: A0A1U7VD03 ((probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X1 {ECO:0000313|RefSeq:XP_009764238.1}))
HSP 1 Score: 1413.28 bits (3657), Expect = 0.000e+0
Identity = 676/917 (73.72%), Postives = 794/917 (86.59%), Query Frame = 0
Query: 15 PALMCQVTEFVSIDCGGTKNYTDLNTGLEWISDTGFINHGKSVRLENPDATSSQYQTRRDFPIDDKKYCYTLRTEERRRYLVRATFLYGN-SAENTYPKFWLYLDATKWSTVTIMDASKVHVKEMIIRAPSSSIDVCLCHATTGSPFISTLELRPLNLSMYATEFEDDFYLKVAARVNFGAASVQAIRYPDDPYDRIWSSDLEKRQNFLVGVAPGTRRINTTKYINTNTREYPPNKVMQTAVVGTRGRLTYRLNLEDFPANARAYAYFAEIEDLGTLDSRKFRIEQPYMPDYYNAVVNIAENANGSYTLYEPSFMNATLDFVLSFSFVKTQDSTRGPLLNAIEISKYVQIAKKTNMQDVNILNSLRAKSKDSNWVDEDGGDPCLPTPWEWVTCSSDIQPRITKIALSGKDVEGNIPPELNNMDGLIELWLDGNSFQGPIPDISNLINLQVLHLENNKLTGPLPPYLGSLPSLRELYVDNNSLTGDIPSALLKGKVKLGYEGNPGLRNVTKHKRNRRVIVGVAIGVLAILLLLLIGSLLLLCRLQKKRSHQN-NAKSDSLRTSTKRSSAFSIARGGSLMEEGVAYHITFCEIEEATKNFSKQIGKGSFGPVYYGKMKDGKEIAVKIMADSSSHGTRQFVTEIALLSRIHHRNLVPLIGYCEEENQSMLVYEYMHNGTLRDHMHDSSNQKQLDWLARLRIAEDAAKGLEYLHSGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQTEEDQTHISSVAQGTVGYLDPGYYANHQLTEKSDIYSFGVVLLELISGRKPISAEEFGLDWSIVHWARSMIRKGDIISIIDPSLAEKVKIESIWRVAEVAIQCVEQHSSSRPRMQEIILAIQDAIKIEKGCDKI-TSGTSKSESSRRTLLTSFLDDIDSPELSDESLAPSAR 928
PA++CQVTEFVSIDCG NYTD +TGL W +D G + +GK V + N D S QYQ RRDFP D KKYCYTL T+ERRRYLVRATFLYGN +AE TYPKF LYLD TKW+T+TI ++S+++VKEMIIRAPS+SIDVCLC ATT SPFISTLELRPLNLSMYAT++ED+FYLKVAARV+FGA S + IRYPDDPYDRIW SDLEKR NFLV VA GT RINTTKYINTNTREYPP KVMQTAVVGT+G L+YRLNL+DFPANARA+AYFAEIE+LG ++RKF++E PY+PDY NAVVNIAENANGSYTLYEPS+MN TLDF+LSFSFVKT+DSTRGPLL+A+EI +Y QIA KTN QDV ILN+ R+ S S+W DEDG DPC+P WEWVTCS+ + PRITKI LSGK+V+G IPPELN+M+GL ELWLDGNS G IPD+SNL+NL+ +HLE+NKLTGP+P YLG LPSL EL V NNSLTG+IP +LLKGKV YEGNP LR +KH + +VI+GV++G + +L +L+ S+L LC + K SH+ + K +SLR STK S+ SIARGGSLM+EGVAY+I EIEEAT+NFSK+IGKGSFGPVYYG+++DGKE+AVK MADSSSHGT+QF TE+ALLSRIHHRNLVPLIGY E+++Q MLVYEYMHNGTLRDH+ +S++QK LDWLARL IAEDAAKGLEYLH+GCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQ EED TH+SSVA+GTVGYLDP YYAN QLTEKSD+YSFGVVLLELISGR+P+S E++G +WSIVHWARS+IRKGD+ISI+DP+L +VK+ES+WR+AEVAIQCVE+H SSRPRM EI+ AIQDAIKIEKG DK+ +SG+SK++SSR+TLLTSFL DI+SP++S+ SL PSAR
Sbjct: 16 PAIVCQVTEFVSIDCGSATNYTDPSTGLTWTTDAGIMRNGKPVVVVNADVNSQQYQRRRDFPADSKKYCYTLNTKERRRYLVRATFLYGNPAAEGTYPKFQLYLDTTKWATITISESSRIYVKEMIIRAPSNSIDVCLCCATTESPFISTLELRPLNLSMYATDYEDNFYLKVAARVDFGAQSNEPIRYPDDPYDRIWDSDLEKRPNFLVDVAAGTERINTTKYINTNTREYPPVKVMQTAVVGTKGMLSYRLNLDDFPANARAFAYFAEIENLGINETRKFKMEHPYVPDYSNAVVNIAENANGSYTLYEPSYMNITLDFILSFSFVKTRDSTRGPLLSAMEICRYSQIAAKTNEQDVTILNAFRSMSLGSDWTDEDG-DPCIPAQWEWVTCSTTLPPRITKITLSGKNVKGEIPPELNHMEGLTELWLDGNSLTGSIPDLSNLVNLRTIHLEDNKLTGPIPSYLGGLPSLIELDVQNNSLTGEIPPSLLKGKVTFKYEGNPNLRPESKHNKRHKVILGVSVGAVVLLFVLITVSILFLCHFRTKVSHKKGDTKGESLRRSTKASTTCSIARGGSLMDEGVAYYIPLSEIEEATENFSKKIGKGSFGPVYYGRLRDGKEVAVKTMADSSSHGTKQFATEVALLSRIHHRNLVPLIGYFEDDHQRMLVYEYMHNGTLRDHISESTSQKHLDWLARLHIAEDAAKGLEYLHTGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQAEEDLTHVSSVARGTVGYLDPEYYANQQLTEKSDVYSFGVVLLELISGRRPVSTEDYGAEWSIVHWARSLIRKGDVISIMDPALVGRVKVESVWRIAEVAIQCVERHGSSRPRMHEILSAIQDAIKIEKGIDKLSSSGSSKAQSSRKTLLTSFL-DIESPDISNSSLTPSAR 930
BLAST of XM_017367858.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S3YF56 ((probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X1 {ECO:0000313|RefSeq:XP_016450652.1}))
HSP 1 Score: 1413.28 bits (3657), Expect = 0.000e+0
Identity = 676/917 (73.72%), Postives = 794/917 (86.59%), Query Frame = 0
Match: A0A1S3YF56 ((probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X1 {ECO:0000313|RefSeq:XP_016450652.1}))
HSP 1 Score: 1413.28 bits (3657), Expect = 0.000e+0
Identity = 676/917 (73.72%), Postives = 794/917 (86.59%), Query Frame = 0
Query: 15 PALMCQVTEFVSIDCGGTKNYTDLNTGLEWISDTGFINHGKSVRLENPDATSSQYQTRRDFPIDDKKYCYTLRTEERRRYLVRATFLYGN-SAENTYPKFWLYLDATKWSTVTIMDASKVHVKEMIIRAPSSSIDVCLCHATTGSPFISTLELRPLNLSMYATEFEDDFYLKVAARVNFGAASVQAIRYPDDPYDRIWSSDLEKRQNFLVGVAPGTRRINTTKYINTNTREYPPNKVMQTAVVGTRGRLTYRLNLEDFPANARAYAYFAEIEDLGTLDSRKFRIEQPYMPDYYNAVVNIAENANGSYTLYEPSFMNATLDFVLSFSFVKTQDSTRGPLLNAIEISKYVQIAKKTNMQDVNILNSLRAKSKDSNWVDEDGGDPCLPTPWEWVTCSSDIQPRITKIALSGKDVEGNIPPELNNMDGLIELWLDGNSFQGPIPDISNLINLQVLHLENNKLTGPLPPYLGSLPSLRELYVDNNSLTGDIPSALLKGKVKLGYEGNPGLRNVTKHKRNRRVIVGVAIGVLAILLLLLIGSLLLLCRLQKKRSHQN-NAKSDSLRTSTKRSSAFSIARGGSLMEEGVAYHITFCEIEEATKNFSKQIGKGSFGPVYYGKMKDGKEIAVKIMADSSSHGTRQFVTEIALLSRIHHRNLVPLIGYCEEENQSMLVYEYMHNGTLRDHMHDSSNQKQLDWLARLRIAEDAAKGLEYLHSGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQTEEDQTHISSVAQGTVGYLDPGYYANHQLTEKSDIYSFGVVLLELISGRKPISAEEFGLDWSIVHWARSMIRKGDIISIIDPSLAEKVKIESIWRVAEVAIQCVEQHSSSRPRMQEIILAIQDAIKIEKGCDKI-TSGTSKSESSRRTLLTSFLDDIDSPELSDESLAPSAR 928
PA++CQVTEFVSIDCG NYTD +TGL W +D G + +GK V + N D S QYQ RRDFP D KKYCYTL T+ERRRYLVRATFLYGN +AE TYPKF LYLD TKW+T+TI ++S+++VKEMIIRAPS+SIDVCLC ATT SPFISTLELRPLNLSMYAT++ED+FYLKVAARV+FGA S + IRYPDDPYDRIW SDLEKR NFLV VA GT RINTTKYINTNTREYPP KVMQTAVVGT+G L+YRLNL+DFPANARA+AYFAEIE+LG ++RKF++E PY+PDY NAVVNIAENANGSYTLYEPS+MN TLDF+LSFSFVKT+DSTRGPLL+A+EI +Y QIA KTN QDV ILN+ R+ S S+W DEDG DPC+P WEWVTCS+ + PRITKI LSGK+V+G IPPELN+M+GL ELWLDGNS G IPD+SNL+NL+ +HLE+NKLTGP+P YLG LPSL EL V NNSLTG+IP +LLKGKV YEGNP LR +KH + +VI+GV++G + +L +L+ S+L LC + K SH+ + K +SLR STK S+ SIARGGSLM+EGVAY+I EIEEAT+NFSK+IGKGSFGPVYYG+++DGKE+AVK MADSSSHGT+QF TE+ALLSRIHHRNLVPLIGY E+++Q MLVYEYMHNGTLRDH+ +S++QK LDWLARL IAEDAAKGLEYLH+GCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQ EED TH+SSVA+GTVGYLDP YYAN QLTEKSD+YSFGVVLLELISGR+P+S E++G +WSIVHWARS+IRKGD+ISI+DP+L +VK+ES+WR+AEVAIQCVE+H SSRPRM EI+ AIQDAIKIEKG DK+ +SG+SK++SSR+TLLTSFL DI+SP++S+ SL PSAR
Sbjct: 16 PAIVCQVTEFVSIDCGSATNYTDPSTGLTWTTDAGIMRNGKPVVVVNADVNSQQYQRRRDFPADSKKYCYTLNTKERRRYLVRATFLYGNPAAEGTYPKFQLYLDTTKWATITISESSRIYVKEMIIRAPSNSIDVCLCCATTESPFISTLELRPLNLSMYATDYEDNFYLKVAARVDFGAQSNEPIRYPDDPYDRIWDSDLEKRPNFLVDVAAGTERINTTKYINTNTREYPPVKVMQTAVVGTKGMLSYRLNLDDFPANARAFAYFAEIENLGINETRKFKMEHPYVPDYSNAVVNIAENANGSYTLYEPSYMNITLDFILSFSFVKTRDSTRGPLLSAMEICRYSQIAAKTNEQDVTILNAFRSMSLGSDWTDEDG-DPCIPAQWEWVTCSTTLPPRITKITLSGKNVKGEIPPELNHMEGLTELWLDGNSLTGSIPDLSNLVNLRTIHLEDNKLTGPIPSYLGGLPSLIELDVQNNSLTGEIPPSLLKGKVTFKYEGNPNLRPESKHNKRHKVILGVSVGAVVLLFVLITVSILFLCHFRTKVSHKKGDTKGESLRRSTKASTTCSIARGGSLMDEGVAYYIPLSEIEEATENFSKKIGKGSFGPVYYGRLRDGKEVAVKTMADSSSHGTKQFATEVALLSRIHHRNLVPLIGYFEDDHQRMLVYEYMHNGTLRDHISESTSQKHLDWLARLHIAEDAAKGLEYLHTGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQAEEDLTHVSSVARGTVGYLDPEYYANQQLTEKSDVYSFGVVLLELISGRRPVSTEDYGAEWSIVHWARSLIRKGDVISIMDPALVGRVKVESVWRIAEVAIQCVERHGSSRPRMHEILSAIQDAIKIEKGIDKLSSSGSSKAQSSRKTLLTSFL-DIESPDISNSSLTPSAR 930
| Match Name | Stats | Description |
|---|---|---|
| A0A6I9TYX6 | E-Value: 0.000e+0, PID: 76.08 | (probable LRR receptor-like serine/threonine-prote... [more] |
| A0A2G9G0C4 | E-Value: 0.000e+0, PID: 74.54 | (Serine/threonine protein kinase {ECO:0000313|EMBL... [more] |
| A0A6P6VDM9 | E-Value: 0.000e+0, PID: 73.71 | (probable LRR receptor-like serine/threonine-prote... [more] |
| A0A2G9GW84 | E-Value: 0.000e+0, PID: 74.33 | (Serine/threonine protein kinase {ECO:0000313|EMBL... [more] |
| A0A6P6V1T6 | E-Value: 0.000e+0, PID: 73.49 | (probable LRR receptor-like serine/threonine-prote... [more] |
| A0A068UXN3 | E-Value: 0.000e+0, PID: 73.49 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A5B7AED4 | E-Value: 0.000e+0, PID: 76.77 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A1J6K852 | E-Value: 0.000e+0, PID: 73.72 | (Putative lrr receptor-like serinethreonine-protei... [more] |
| A0A1U7VD03 | E-Value: 0.000e+0, PID: 73.72 | (probable LRR receptor-like serine/threonine-prote... [more] |
| A0A1S3YF56 | E-Value: 0.000e+0, PID: 73.72 | (probable LRR receptor-like serine/threonine-prote... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |