MTFRTSFSLLSKLTRHRRQLAYKNPIFLHSTTILTSPSSPFLRRHSFSSN
HPPDFKPEQVSTRPEFSDHGFDYGLFNTVPDAVDEQSDFKPDPDSVTIRP
DFSDQGFDSEIGSTMAGVVTEQDSIFPIRALISVLDGYHDFSGFSWWVII
SSSVFAFRIAMFPVIIYQLSMLKQISMLLPKLPPPFPRPFSGKSYVEQFK
YFTKERKAVGCPSLVWHIVPAVIQMPCFILGVTTIRRMALNHHPGFENGG
VLWFQDLTQMPYGVWGAVFPLLVAGLHVTNVALTFGKMSINEWPDRMRLM
LRGYKFILDGLVLPMFIVGFFIPQGGSVYWVANSVSTLIQHLFIGNASVR
SYFGLPVKDGPGKGLAKNENTQVDEALGVTLVDTSVKHPKKVSAKDLSPK
ELVNLSIQMLAKGDKQKAVPLLRLALKKDPEHIRSLIVLGQTLLQDGMLA
EAVENLDHAVSNILLAGPPSKVEEIDQLILASMWCGVAYIRNGRSAEGIP
HLERIGHMNEPADAKSKAHYYDGLLMLASALVNEGRKPEAEKYLNKAVAY
SSAYNVYLEHLHKEDDHIVSDMVNNKRKGQ
| Relationships |
|---|
| The polypeptide, XM_017366368.1, derives from mRNA, XM_017366368.1. |

Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
Match: A0A5N6QRU0 ((Uncharacterized protein {ECO:0000313|EMBL:KAE8009877.1}))
HSP 1 Score: 483.797 bits (1244), Expect = 2.969e-163
Identity = 236/459 (51.42%), Postives = 330/459 (71.90%), Query Frame = 0
Query: 119 VTEQDSIFPIRALISVLDGYHDFSGFSWWVIISSSVFAFRIAMFPVIIYQLSMLKQISMLLPKLPPPFPRPFSGKSYVEQFKYFTKERKAVGCPSLVWHIVPAVIQMPCFILGVTTIRRMALNHHPGFENGGVLWFQDLTQMPYGVWGAVFPLLVAGLHVTNVALTFGKMSINEWPDRMRLMLRGYKFILDGLVLPMFIVGFFIPQGGSVYWVANSVSTLIQHLFIGNASVRSYFGLPVKDGPGKGLAKNENTQVDEALGVTLVDTSVKHPKKVSAKDLSPKELVNLSIQMLAKGDKQKAVPLLRLALKKDPEHIRSLIVLGQTLLQDGMLAEAVENLDHAVSNILLAGPPSKVEEIDQLILASMWCGVAYIRNGRSAEGIPHLERIGHMNEPADAKSKAHYYDGLLMLASALVNEGRKPEAEKYLNKAVAYSSAYNVYLEHLHKEDDHIVSDMVNNKR 577
VT DSI P+RA+IS+LDG+HD +G WW++I+SS A R+A+ PV+I QL+ LK+I L PKLPPP P P SG+SY++Q F KER+A+GCPS +W + IQ+PCF L VT++RRM+L+HHPGF+ GG LWFQ+LT+ P+G+ G +FPLL+AGLH N+ ++FG S+ + + L+ + YKF L+ L LP+F +G+ IPQG VYW+ NS TLIQ L + + +VR+ GLP K P N+ A +T D+ K +++S K+L PKEL+ LS+Q+L+ G K++A+PLLRLAL KDPE++R+LIV+GQTLLQ+G LAEA + L+ A+S + LAG P++ E + LIL+S W GVA +R G+SAEG+ HLER+G + EP +A+ KAHYYDG+++LASAL NEGRK EA YL A AY+ AY YLE ++D+ VSD+ +++R
Sbjct: 110 VTVDDSILPVRAMISMLDGFHDLTGLPWWIVIASSTLALRVALLPVLILQLNKLKRIGDLFPKLPPPLPPPMSGRSYIDQISLFRKERRAIGCPSFLWFLSYFSIQVPCFFLWVTSVRRMSLDHHPGFDCGGALWFQNLTEFPHGISGPIFPLLIAGLHYANIQVSFGASSVGKMTGILGLLAKYYKFYLEFLTLPLFFIGYCIPQGSLVYWLTNSSLTLIQQLSLRHPAVRAKLGLPDKGAPTAA----GNSGETAAPEITSTDSPTKQ-RQISVKNLHPKELLALSVQLLSNGKKERAIPLLRLALDKDPEYVRALIVMGQTLLQNGQLAEATDYLERAISKLFLAGDPTEAEYAELLILSSQWAGVACLRQGKSAEGMVHLERVGSLEEPEEARIKAHYYDGIVLLASALYNEGRKAEAANYLRMAAAYNPAYKEYLEQCENDEDNFVSDLTSSRR 563
Match: A0A2I4EMI5 ((ALBINO3-like protein 2, chloroplastic {ECO:0000313|RefSeq:XP_018820604.1}))
HSP 1 Score: 480.33 bits (1235), Expect = 5.206e-162
Identity = 240/459 (52.29%), Postives = 328/459 (71.46%), Query Frame = 0
Query: 119 VTEQDSIFPIRALISVLDGYHDFSGFSWWVIISSSVFAFRIAMFPVIIYQLSMLKQISMLLPKLPPPFPRPFSGKSYVEQFKYFTKERKAVGCPSLVWHIVPAVIQMPCFILGVTTIRRMALNHHPGFENGGVLWFQDLTQMPYGVWGAVFPLLVAGLHVTNVALTFGKMSINEWPDRMRLMLRGYKFILDGLVLPMFIVGFFIPQGGSVYWVANSVSTLIQHLFIGNASVRSYFGLPVKDGPGKGLAKNENTQVDEALGVTLVDTSVKHPKKVSAKDLSPKELVNLSIQMLAKGDKQKAVPLLRLALKKDPEHIRSLIVLGQTLLQDGMLAEAVENLDHAVSNILLAGPPSKVEEIDQLILASMWCGVAYIRNGRSAEGIPHLERIGHMNEPADAKSKAHYYDGLLMLASALVNEGRKPEAEKYLNKAVAYSSAYNVYLEHLHKEDDHIVSDMVNNKR 577
VT DSI P+ +IS+LDGYHD +GF WW++I+SS A R+A+FPV+I+QL+ LK+I+ L PKLPPP P P SG+SY++QF F KE++A GCPS +W + + IQ+PCF+L +TTIRRM+L+ HPGF+ GG LWFQ+LT+ P+GV G +FPLL+AGLH N+ ++ G S+ + LM + YKF L+ LP+F +G+ IPQG VYWV NS ++IQ L + + +VR+ GLP K P VD +T +D+ +K KVS + LSPKEL+ LS+++LAKG K+ A+PLLR+AL KDPE+ R++IV+GQTLLQ+G L EA L+ A+S ++LAG P+ VE++D LIL+S W GVA R G+ AEGI HLER+ M EP + KAHY+DGL++LASAL NEGRK EA KYL A AY+ AYN YLE ++D+ VSD+V+++R
Sbjct: 113 VTVDDSILPVHWVISMLDGYHDLTGFPWWIVIASSTLALRVALFPVLIFQLNKLKKIAELFPKLPPPLPPPLSGRSYIDQFSLFRKEKRASGCPSFLWFLAYSCIQIPCFLLWMTTIRRMSLDQHPGFDCGGALWFQNLTEFPHGVSGPIFPLLIAGLHYINIQVSLGTSSVGKGNGLFGLMAKYYKFCLEFFSLPLFFIGYCIPQGSLVYWVTNSSLSVIQQLSLSHPAVRAKLGLPDKGAP----------TVDPE--ITPIDSPIKQ-GKVSVQSLSPKELLALSVKLLAKGQKESAIPLLRMALDKDPEYTRAMIVMGQTLLQNGQLVEATGYLEGAISKLILAGDPTSVEDVDLLILSSQWAGVACTRQGKKAEGIVHLERVASMKEPEEPTCKAHYFDGLVLLASALYNEGRKTEAAKYLRLAAAYNPAYNEYLEQCENDEDNFVSDLVSSRR 558
Match: A0A1S3B4X9 ((ALBINO3-like protein 2, chloroplastic {ECO:0000313|RefSeq:XP_008441758.1}))
HSP 1 Score: 475.707 bits (1223), Expect = 6.306e-160
Identity = 267/582 (45.88%), Postives = 367/582 (63.06%), Query Frame = 0
Query: 11 SKLTRHRRQLAYKNPIFLHSTTILTSPSSPFL--RRHSFSSNHPPDFKPEQVSTRPEFSD----HGFDYGLFNTVPDAVDEQSDFKPDPDSVTIRPDFSDQGF------DSEIGSTMA---GVVTEQDSIFPIRALISVLDGYHDFSGFSWWVIISSSVFAFRIAMFPVIIYQLSMLKQISMLLPKLPPPFPRPFSGKSYVEQFKYFTKERKAVGCPSLVWHIVPAVIQMPCFILGVTTIRRMALNHHPGFENGGVLWFQDLTQMPYGVWGAVFPLLVAGLHVTNVALTFGKMSINEWPDRMRLMLRGYKFILDGLVLPMFIVGFFIPQGGSVYWVANSVSTLIQHLFIGNASVRSYFGLPVKDGPGKGLAKNENTQVDEALGVTLVDTSVKHPKKVSAKDLSPKELVNLSIQMLAKGDKQKAVPLLRLALKKDPEHIRSLIVLGQTLLQDGMLAEAVENLDHAVSNILLAGPPSKVEEIDQLILASMWCGVAYIRNGRSAEGIPHLERIGHMNEPADAKSKAHYYDGLLMLASALVNEGRKPEAEKYLNKAVAYSSAYNVYLEHLHKEDDHIVSDMVNNKR 577
SKL H R+L P +S + L+ P PF H+ SS+H F P S F F T ++ S+F+ +S + D D G D E+G + G T +DSI PI+ L S+LDG+H ++G WW +I+SS A R + P++I QL+ LK+I L PKLPPP P P S +SY++Q F KERKA+GCPS +W IQ+PCF+L + TIR+M+L+HHPGF+ GG LWFQ+LT+ P+GV+G +FP L+A LH NV L+F K S+ + + ++ + YK L+ L +P+F +G+ IPQG VYWV NS T IQ L + + +VRS GLP +D P N N + G ++T K KKVS + LSPKEL+ LS+Q+L+KG K++A+PLLR AL KDPE++R+L+V+GQTLLQ+ AEA L+ A+S + L+G P++VE +D LILAS W GVA IR G+ EGI HLER+ +M EP + KSKAHYYDGL++LASAL NEGRK EA KYL AVAY+ AY VYL+ ++D +V D+V+++R
Sbjct: 4 SKLCTHLRRL---RPSRFYSISFLSCPL-PFRLHEAHTLSSSHHQPFTTPSHRFDPHISSVSALTAFSSRYFWT---RSNDDSEFEQSVESRHLSND--DTGILQSGIQDLELGGVVEEVIGTTTVEDSILPIQQLTSILDGFHQYTGMPWWAVIASSTLALRFTLLPLLIVQLNKLKRIGELFPKLPPPLPPPLSRRSYIDQISLFRKERKAIGCPSFLWFPAYFFIQVPCFLLWMVTIRKMSLDHHPGFDYGGALWFQNLTEYPHGVFGPIFPFLIASLHFINVQLSFRKSSLGKETGIIGILAKYYKLYLNLLTVPLFFIGYCIPQGSLVYWVTNSSFTAIQQLTLQHPAVRSKLGLPSRDAP----VGNANVRETNNPGKIPLETPTKW-KKVSVEKLSPKELLALSVQLLSKGQKERAIPLLRQALNKDPEYVRALVVMGQTLLQNAQPAEATVYLERAISKLFLSGHPTEVEGVDLLILASQWAGVASIRQGKMVEGIAHLERVANMKEPEEPKSKAHYYDGLVLLASALYNEGRKAEATKYLKSAVAYNPAYKVYLDQCEDDNDKLVGDLVSSRR 571
Match: A0A5B6YGS5 ((Uncharacterized protein {ECO:0000313|EMBL:MPA30938.1}) (Fragment))
HSP 1 Score: 474.167 bits (1219), Expect = 3.310e-159
Identity = 240/467 (51.39%), Postives = 328/467 (70.24%), Query Frame = 0
Query: 111 IGSTMAGVVTEQDSIFPIRALISVLDGYHDFSGFSWWVIISSSVFAFRIAMFPVIIYQLSMLKQISMLLPKLPPPFPRPFSGKSYVEQFKYFTKERKAVGCPSLVWHIVPAVIQMPCFILGVTTIRRMALNHHPGFENGGVLWFQDLTQMPYGVWGAVFPLLVAGLHVTNVALTFGKMSINEWPDRMRLMLRGYKFILDGLVLPMFIVGFFIPQGGSVYWVANSVSTLIQHLFIGNASVRSYFGLPVKDGPGKGLAKNENTQVDEALGVTLVDTSVKHPKKVSAKDLSPKELVNLSIQMLAKGDKQKAVPLLRLALKKDPEHIRSLIVLGQTLLQDGMLAEAVENLDHAVSNILLAGPPSKVEEIDQLILASMWCGVAYIRNGRSAEGIPHLERIGHMNEPADAKSKAHYYDGLLMLASALVNEGRKPEAEKYLNKAVAYSSAYNVYLEHLHKEDDHIVSDMVNNKR 577
I T+A V E+ SI P+RALI +LDG+HD +G WW+ I+SS A RIA+ P++I QL LK+I+ L PKLPPP P P SG+SY +Q F KER+AVGCPS +W + +Q+PCF L +T+IRRM+L+HH GF+ GG LWFQ+LT++P+GV G +FPLL+ GL+ NV ++F K S+ + ++L+ YKF LD L LP+F +GF IPQG VYW+ NS TL Q L + + VR GLPVKD P LA + +V G+ L+D K +K+S ++LSP+EL+ LS+Q+LAKG K +A+PLLRLAL KDP ++R+L+V+GQT+LQ+G+ AEA L+ A+S + L G P++ E++D +I+AS W GVA +R G+ EGI HLER+ + EP D+KSKAHYYD L++LASAL EGRK EA KYL A AY+S YN LE ++D VSD+V ++R
Sbjct: 120 IAETVASVSGEE-SILPVRALILLLDGFHDLTGLPWWITIASSTLALRIALLPILILQLHKLKRIAELFPKLPPPLPPPLSGRSYSDQISLFRKERRAVGCPSYLWFLAFISVQVPCFFLWMTSIRRMSLDHHSGFDCGGTLWFQNLTELPHGVLGPIFPLLITGLYFANVQISFRKSSVGKMNGLFGILLKYYKFYLDILTLPIFFIGFCIPQGSLVYWLTNSTLTLFQQLSLNHPGVREKLGLPVKDAP---LAAASSEEVGTP-GIALLDPPRKQ-RKISVQNLSPRELLALSVQLLAKGHKDRAIPLLRLALDKDPNYVRALVVMGQTVLQNGLPAEATNYLERAISKLFLVGHPTESEDVDLMIVASQWAGVACVRQGKMTEGILHLERVACLKEPEDSKSKAHYYDSLVLLASALYGEGRKTEAAKYLRMAAAYNSDYNELLEQCENDEDDFVSDLVKSRR 580
Match: A0A6J1EYX9 ((ALBINO3-like protein 2, chloroplastic isoform X1 {ECO:0000313|RefSeq:XP_022933144.1}))
HSP 1 Score: 472.241 bits (1214), Expect = 1.129e-158
Identity = 270/587 (46.00%), Postives = 366/587 (62.35%), Query Frame = 0
Query: 11 SKLTRHRRQLAYKNPIFLHSTTILTSP-SSPFLRRHSFSSNHPPDFKPEQVSTRPEFSDHGFDYGLFN----------TVPDAVDEQSDFKPDPDSVTIRPDFSDQGFDSEIGS-TMAGVVTE-------QDSIFPIRALISVLDGYHDFSGFSWWVIISSSVFAFRIAMFPVIIYQLSMLKQISMLLPKLPPPFPRPFSGKSYVEQFKYFTKERKAVGCPSLVWHIVPAVIQMPCFILGVTTIRRMALNHHPGFENGGVLWFQDLTQMPYGVWGAVFPLLVAGLHVTNVALTFGKMSINEWPDRMRLMLRGYKFILDGLVLPMFIVGFFIPQGGSVYWVANSVSTLIQHLFIGNASVRSYFGLPVKDGP-GKGLAKNENTQVDEALGVTLVDTSVKHPKKVSAKDLSPKELVNLSIQMLAKGDKQKAVPLLRLALKKDPEHIRSLIVLGQTLLQDGMLAEAVENLDHAVSNILLAGPPSKVEEIDQLILASMWCGVAYIRNGRSAEGIPHLERIGHMNEPADAKSKAHYYDGLLMLASALVNEGRKPEAEKYLNKAVAYSSAYNVYLEHLHKEDDHIVSDMVNNKR 577
SKL + R+L P +S L+ P +S H+ S+H F TRP H FD+ + + ++ D+ S+F+ D R D G S I + GVV E ++SI P + L S+LDG+H ++G WW +I+SS A R + P++I QL+ LK+I L PKLPPP P P SG+SY+ Q F KERKA+GCPS +W + IQ+PCF+L + TIR+M+LNHHPGF+ GG LWFQ+LT+ P+GV G +FPLLVA LH NV ++F K S+ + ++ + YK L+ L +P+F +G+ IPQG VYWV NS T IQ L + + +VRS GLP KD P G + N G +DT K KK+ + LSPKEL+ LS+Q+L+KG K+KA+PLLR AL KDPE++R+LIV+GQTLLQ+G AEA+ L+ A+S + L+G P++VE D LILAS W GVA IR G+ EGI HLERI +M EP + KSKAHYYDGL++LASAL NEGRK EA KYL A AY+ AY YL+ ++D +V D+V+++R
Sbjct: 4 SKLCTNLRRL---RPSRFYSCASLSYPIASRLHEAHTLPSSHHHSF------TRP---THRFDHHITSIGALTAFSSRSLWTRSDDDSEFQ-RIDLFASRLSDDDTGIQSGIQDLELGGVVEEVINATAVEESILPTQQLTSILDGFHQYTGLPWWAVIASSTLALRFTLLPLLIVQLNKLKRIGELFPKLPPPLPPPLSGRSYINQLSLFRKERKAIGCPSFLWFLAYFSIQVPCFLLWMVTIRKMSLNHHPGFDCGGALWFQNLTEYPHGVLGPIFPLLVASLHFINVQVSFRKSSLEKATGIFGILAKYYKLYLNLLTVPLFFIGYCIPQGSLVYWVTNSSFTAIQQLTLQHPAVRSKLGLPFKDAPVGTATLRETNDP-----GKLPLDTPTKW-KKIYVEKLSPKELLALSVQLLSKGQKEKAIPLLRQALNKDPEYVRALIVMGQTLLQNGQPAEAIAFLERAISKLFLSGHPTEVEGEDLLILASQWAGVASIRQGKMVEGIAHLERIANMKEPEEPKSKAHYYDGLVLLASALYNEGRKAEATKYLQSAAAYNPAYKEYLDQCEDDNDKLVGDLVSSRR 571
Match: A0A2R6PKS0 ((ALBINO3-like protein {ECO:0000313|EMBL:PSR92941.1}))
HSP 1 Score: 468.389 bits (1204), Expect = 1.608e-157
Identity = 244/459 (53.16%), Postives = 323/459 (70.37%), Query Frame = 0
Query: 123 DSIFPIRALISVLDGYHDFSGFSWWVIISSSVFAFRIAMFPVIIYQLSMLKQISMLLPKLPPPFPRPFSGKSYVEQFKYFTKERKAVGCPSLVWHIVPAVIQMPCFILGVTTIRRMALNHHPGFENGGVLWFQDLTQMPYGVWGAVFPLLVAGLHVTNVALTFGKMSINEWPDRMRLMLRGYKFILDGLVLPMFIVGFFIPQGGSVYWVANSVSTLIQHLFIGNASVRSYFGLPVKDGPGKGLAKNENTQVDEALGVTLVDTSVKHPK---KVSAKDLSPKELVNLSIQMLAKGDKQKAVPLLRLALKKDPEHIRSLIVLGQTLLQDGMLAEAVENLDHAVSNILLAGPPSKVEEIDQLILASMWCGVAYIRNGRSAEGIPHLERIGHMNEPADAKSKAHYYDGLLMLASALVNEGRKPEAEKYLNKAVAYSSAYNVYLEHLHKEDDHIVSDMVNNKRK 578
DSI P+RALIS+LD YHDF GF WWVII+SS A RI + PV+I QL LK+I+ PKLPPPFP P SG+SY++QF F KER+A+G PS +W + +Q+PCF+L +TT+RRM+L+HHPGF+ GG LWFQ+LT+ P+GV G +FPLL+A LH NV ++F S + L+ + YKF LD L LP+ GF +PQG +YW+ NS TLIQ L + + VR GLP K P + + ++D T V+T P+ K+ +DLSP+EL+ LS+ LAKG K KA+PLLRL L KDPE++R+++V+GQTLLQ+ L EA E + A+S + L G P++VEEID LILAS W GVAYIR GR+AEGI HLER+ ++ EP D+KSKAHYYD ++LASAL NEGRK EA KYL A AY S+Y+VYLE K++D V+D+V+++R+
Sbjct: 94 DSILPVRALISILDSYHDFIGFPWWVIIASSTLALRITLLPVLILQLKKLKKIAESFPKLPPPFPPPLSGRSYIDQFSLFRKERRAIGSPSYLWFLAYVSLQVPCFLLWMTTVRRMSLDHHPGFDCGGALWFQNLTEFPHGVLGPIFPLLIASLHYVNVQVSFRTSSTGKVTGLFGLLAKYYKFYLDLLALPILFTGFCVPQGSLIYWLTNSSVTLIQQLSLNHHGVREKLGLPKKVDP---VPTSNREEMD-----TPVETQAGQPRQQDKIPLEDLSPRELLALSVTHLAKGHKDKAIPLLRLVLDKDPEYVRAMVVMGQTLLQNKQLVEATEYFERAISKLFLIGHPTEVEEIDLLILASQWAGVAYIRQGRNAEGIRHLERVANLKEPKDSKSKAHYYDAFILLASALYNEGRKSEAAKYLRLAAAYDSSYSVYLEECEKDEDAFVNDLVSSRRR 544
Match: A0A6J1ICK0 ((ALBINO3-like protein 2, chloroplastic isoform X1 {ECO:0000313|RefSeq:XP_022973910.1}))
HSP 1 Score: 469.159 bits (1206), Expect = 2.227e-157
Identity = 250/503 (49.70%), Postives = 333/503 (66.20%), Query Frame = 0
Query: 84 DEQSDFKPDPDSVTIRPDFSDQGFDSEIGS-TMAGVVTE-------QDSIFPIRALISVLDGYHDFSGFSWWVIISSSVFAFRIAMFPVIIYQLSMLKQISMLLPKLPPPFPRPFSGKSYVEQFKYFTKERKAVGCPSLVWHIVPAVIQMPCFILGVTTIRRMALNHHPGFENGGVLWFQDLTQMPYGVWGAVFPLLVAGLHVTNVALTFGKMSINEWPDRMRLMLRGYKFILDGLVLPMFIVGFFIPQGGSVYWVANSVSTLIQHLFIGNASVRSYFGLPVKDGP-GKGLAKNENTQVDEALGVTLVDTSVKHPKKVSAKDLSPKELVNLSIQMLAKGDKQKAVPLLRLALKKDPEHIRSLIVLGQTLLQDGMLAEAVENLDHAVSNILLAGPPSKVEEIDQLILASMWCGVAYIRNGRSAEGIPHLERIGHMNEPADAKSKAHYYDGLLMLASALVNEGRKPEAEKYLNKAVAYSSAYNVYLEHLHKEDDHIVSDMVNNKR 577
D+ S+F+ D R D G S I + GVV E +DSI P + L S+LDG+H ++G WW +I+SS A R + P++I QL+ LK+I L PKLPPP P P SG+SY+ Q F KERKA+GCPS +W + IQ+PCF+L + TIR+M+LNHHPGF+ GG LWFQ+LT+ P+GV G +FPLLVA LH NV ++F K S+ + ++ + YK L+ L +P+F +G+ IPQG VYWV NS T IQ L + + +VRS GLP KD P G + N G +DT K KK+ + LSPKEL+ LS+Q+L+KG K+KA+PLLR AL KDPE++R+LIV+GQTLLQ+G AEA+ L+ A+S + L+G P++ E D LILAS W GVA IR G+ EGI HLERI +M EP + KSKAHYYDGL++LASAL NEGRK EA KYL A AY+ AY YL+ ++D +V D+V+++R
Sbjct: 76 DDDSEFQ-RTDLFASRLSDDDTGIQSGIQDLELGGVVEEVINATAVEDSILPTQQLTSMLDGFHQYTGLPWWAVIASSTLALRFTLLPLLIVQLNKLKRIGELFPKLPPPLPPPLSGRSYINQLSLFRKERKAIGCPSFLWFVAYFSIQVPCFLLWMVTIRKMSLNHHPGFDCGGALWFQNLTEYPHGVLGPIFPLLVASLHFINVQVSFRKSSLEKATGIFGILAKYYKLYLNLLTVPLFFIGYCIPQGSLVYWVTNSSFTAIQQLTLQHPAVRSKLGLPFKDAPVGTATLRETNDP-----GKLPLDTPTKW-KKIYVEKLSPKELLALSVQLLSKGQKEKAIPLLRQALNKDPEYVRALIVMGQTLLQNGQPAEAIAFLERAISKLFLSGHPTEAEGEDLLILASQWAGVASIRQGKMVEGIAHLERIANMKEPEEPKSKAHYYDGLVLLASALYNEGRKAEATKYLQSAAAYNPAYKEYLDQCEDDNDKLVGDLVSSRR 571
Match: A0A2P6R5A8 ((Putative membrane insertase OXA1/ALB3/YidC, tetratricopeptide-like helical domain-containing protein {ECO:0000313|EMBL:PRQ41569.1}))
HSP 1 Score: 467.233 bits (1201), Expect = 6.315e-157
Identity = 263/582 (45.19%), Postives = 365/582 (62.71%), Query Frame = 0
Query: 3 FRTSFSLLSKLTRHRRQLAYKNPIFLHSTTILTSPSSPFLRR-----HSFSSNHPPDFKPEQVSTRPEFSDHGFDYGLFNTVPDAVDEQSDFKPDPDSVTIRPDFSDQGFDSEIGSTMAGVVTEQDSIFPIRALISVLDGYHDFSGFSWWVIISSSVFAFRIAMFPVIIYQLSMLKQISMLLPKLPPPFPRPFSGKSYVEQFKYFTKERKAVGCPSLVWHIVPAVIQMPCFILGVTTIRRMALNHHPGFENGGVLWFQDLTQMPYGVWGAVFPLLVAGLHVTNVALTFGKMSINEWPDRMRLMLRGYKFILDGLVLPMFIVGFFIPQGGSVYWVANSVSTLIQHLFIGNASVRSYFGLPVKDGPGKGLAKNENTQVDEALGVTLVD--TSVKHPKKVSAKDLSPKELVNLSIQMLAKGDKQKAVPLLRLALKKDPEHIRSLIVLGQTLLQDGMLAEAVENLDHAVSNILLAGPPSKVEEIDQLILASMWCGVAYIRNGRSAEGIPHLERIGHMNEPADAKSKAHYYDGLLMLASALVNEGRKPEAEKYLNKAVAYSSAYNVYLEHLHKEDDHIVSDMVNNKR 577
R SF+ L L+ R+ NPI I S S+ LR + +S+H F S P+ SD G F D DS T Q + G+T +G ++S+ P++ LISVLD +H+ +G WW++I+SS A R+A+ P++I QL LK+I L PKLPPP P FSGKSY + F KER+ +GCPS +W + +Q+PCF L +TTIRRM+L++HPGF+ GG LWFQ+L+++P+GV G +FPLL+AGLH NV ++F S+ + + YK+ L+ + LP+F +G+ IPQG VYWV NS ++IQ L + + +VR+ GLP D P + T+ E LG+ + S KK+S ++LSPKELVNLSIQ+L++GDK++A+PLL LAL+KDPE++R+LIV+GQTLLQ + AEA + L+ A++ + G P++VE+ID LILAS W GVAYIR G+ EGI HL+RI + EP D KSKAHY+DGLLMLASAL N GRK EA K+L A AY+ AYN Y+E EDD +VSD+ +++R
Sbjct: 11 LRPSFNFLPALSHSRQFHLLSNPI---PIPIPKSNSNTHLRNAFAFNQTLASSHSRFFS----SASPDESDFG-----------------RFGGDSDSAT-------QFEVLDFGATASG----EESLLPVQGLISVLDHFHELTGLPWWIVIASSTVAMRVALLPLLIVQLKKLKRIGELSPKLPPPLPPMFSGKSYTDHISVFRKERREIGCPSFLWFLAYFSVQIPCFFLWLTTIRRMSLDNHPGFDCGGTLWFQNLSELPHGVSGPIFPLLIAGLHYANVQISFKASSLKTMKGVFGTLAKYYKYYLNFITLPLFFIGYNIPQGSLVYWVTNSSISVIQQLALKDPAVRAKLGLPDNDRPTE-------TENSEKLGIPELSPLASPTKMKKISLQNLSPKELVNLSIQVLSEGDKERALPLLGLALEKDPEYVRALIVMGQTLLQKELHAEATKYLERAITKLFSTGVPTRVEDIDNLILASQWTGVAYIRQGKFTEGIVHLDRIAQLKEPDDPKSKAHYFDGLLMLASALSNVGRKDEALKHLRLAAAYNPAYNEYVEQCENEDDGLVSDLASSRR 550
Match: A0A200R0R4 ((Membrane insertase OXA1/ALB3/YidC {ECO:0000313|EMBL:OVA16271.1}))
HSP 1 Score: 460.685 bits (1184), Expect = 3.701e-154
Identity = 242/498 (48.59%), Postives = 338/498 (67.87%), Query Frame = 0
Query: 81 DAVDEQSDFKPDPDSVTIRPDFSDQGFDSEIGSTMAGVVTEQDSIF--PIRALISVLDGYHDFSGFSWWVIISSSVFAFRIAMFPVIIYQLSMLKQISMLLPKLPPPFPRPFSGKSYVEQFKYFTKERKAVGCPSLVWHIVPAVIQMPCFILGVTTIRRMALNHHPGFENGGVLWFQDLTQMPYGVWGAVFPLLVAGLHVTNVALTFGKMSINEWPDRMRLMLRGYKFILDGLVLPMFIVGFFIPQGGSVYWVANSVSTLIQHLFIGNASVRSYFGLPVKDGPGKG--LAKNENTQVDEALGVTLVDTSVKHPKKVSAKDLSPKELVNLSIQMLAKGDKQKAVPLLRLALKKDPEHIRSLIVLGQTLLQDGMLAEAVENLDHAVSNILLAGPPSKVEEIDQLILASMWCGVAYIRNGRSAEGIPHLERIGHMNEPADAKSKAHYYDGLLMLASALVNEGRKPEAEKYLNKAVAYSSAYNVYLEHLHKEDDHIVSDMVN 574
+ ++ F+ D +S T + + GFD+ GS +A V D+ + ++ +IS+LDGYHD + WWVII SS A RIA+ PV+ +QL+ K+I+ L PKLPPP P PFSGKS++EQ+ F KER+A+GCPS +W +Q+PCF+L +TTIRRM+LNHHPGF+ GG LWFQ+LT++P G++ FP+L+AGLH NV ++F S+ + + L+ + YK LD L LP+F++GF IPQG +YWV NS T+IQ L + + ++R GLP K+ P K + +N ++ LG D K+S ++LSP EL++LS+Q+LAKG + +A PLLRLAL+KDP+H+R+L+VLGQT LQ ML +A + L+ A+S + G P+K EE+D LILAS W G AYIR G +AEG+ HLERI + EP D K KAHY+DGL+MLAS L NEGRK EAEKYL +A AY + NVYL+ +++D++ SD N
Sbjct: 84 NNLENDEGFQLDGES-TSESEILNLGFDN--GSEVAKEVLNGDAWYEPAVQTIISLLDGYHDLTNLPWWVIIVSSTLALRIALLPVLFFQLNKAKRITELFPKLPPPLPPPFSGKSFIEQYLLFRKERQAIGCPSYLWCFSYVFLQIPCFLLWMTTIRRMSLNHHPGFDCGGALWFQNLTELPNGIFVLTFPILIAGLHYINVQISFRGSSVGKVTGLVGLLSKYYKQYLDILTLPIFVIGFCIPQGSLIYWVTNSSLTVIQQLSLQHPALREKMGLPDKNAPVKSETFSSTDNLEI-RHLGKEKED-------KISVQNLSPDELLSLSVQLLAKGHQDRATPLLRLALEKDPDHVRALVVLGQTFLQKQMLTDATDYLERAISKLFFHGHPTKDEEVDLLILASTWAGAAYIRQGNNAEGLEHLERIAQIKEPEDPKGKAHYFDGLVMLASFLFNEGRKKEAEKYLRRAAAYDPSNNVYLQQCLEDEDNLTSDQRN 570
Match: A0A6J1A644 ((ALBINO3-like protein 2, chloroplastic isoform X2 {ECO:0000313|RefSeq:XP_021282443.1}))
HSP 1 Score: 458.373 bits (1178), Expect = 4.875e-154
Identity = 223/457 (48.80%), Postives = 323/457 (70.68%), Query Frame = 0
Query: 122 QDSIFPIRALISVLDGYHDFSGFSWWVIISSSVFAFRIAMFPVIIYQLSMLKQISMLLPKLPPPFPRPFSGKSYVEQFKYFTKERKAVGCPSLVWHIVPAVIQMPCFILGVTTIRRMALNHHPGFENGGVLWFQDLTQMPYGVWGAVFPLLVAGLHVTNVALTFGKMSINEWPDRMRLMLRGYKFILDGLVLPMFIVGFFIPQGGSVYWVANSVSTLIQHLFIGNASVRSYFGLPVKDGPGKGLAKNENTQVDEALGVTLVDTSVKHPKKVSAKDLSPKELVNLSIQMLAKGDKQKAVPLLRLALKKDPEHIRSLIVLGQTLLQDGMLAEAVENLDHAVSNILLAGPPSKVEEIDQLILASMWCGVAYIRNGRSAEGIPHLERIGHMNEPADAKSKAHYYDGLLMLASALVNEGRKPEAEKYLNKAVAYSSAYNVYLEHLHKEDDHIVSDMVNNKRK 578
++SI P+RA++S+LDGYH+ SGF WW+ I+++ R A+ P ++ L LK+I L PKLP P P SG+SY++Q +F KERKA+GCPS +W + P Q+PC +L VT+IRRM+L++HPGF++GG LWFQ+LT++P+GV G +FP L+A LH NV ++FG S+ + L+ + YKF LD L LP F +GF IPQG VYWV NS +LIQ L + + +VR+ GLP KD LA+ EN+ A G V+ K +++ ++LSPKEL+ LSI+ L++ DK A+ LL+LAL KDPE++++++V+GQTL+Q G+L EA E L+ A+S + L+G ++VE++D LIL+S W GV Y++ G+ AEG+ HLERI ++ EP D KSKAHY+DGLL+L+SAL++ GRK EA K+L VAY+ YN LE + KE+D+ S +VN++R+
Sbjct: 63 EESILPVRAIVSLLDGYHNLSGFPWWITIATATVGMRFALLPAVVIHLQKLKRIGELGPKLPSPLPSTMSGRSYMDQILHFRKERKAIGCPSFLWFLAPFFTQVPCLLLWVTSIRRMSLDNHPGFDSGGALWFQNLTELPHGVLGPIFPFLIASLHYINVQISFGTSSVKKADP---LLAKVYKFYLDFLTLPFFGIGFLIPQGSLVYWVTNSSLSLIQQLTLKHPAVRAKLGLPDKD----ALARVENSGESSAAGTPSVEPPSKQ-HRIAVQNLSPKELLALSIKHLSREDKDLAISLLKLALDKDPEYVKAMVVMGQTLMQKGLLVEASEYLEDAISKLSLSGHLTEVEDVDHLILSSQWAGVVYMKQGKKAEGLAHLERIANLKEPEDPKSKAHYFDGLLLLSSALLDSGRKVEALKFLRLVVAYNPNYNYLLEEVEKEEDNFASGLVNSRRR 511
| Match Name | Stats | Description |
|---|---|---|
| A0A5N6QRU0 | E-Value: 2.969e-163, PID: 51.42 | (Uncharacterized protein {ECO:0000313|EMBL:KAE8009... [more] |
| A0A2I4EMI5 | E-Value: 5.206e-162, PID: 52.29 | (ALBINO3-like protein 2, chloroplastic {ECO:000031... [more] |
| A0A1S3B4X9 | E-Value: 6.306e-160, PID: 45.88 | (ALBINO3-like protein 2, chloroplastic {ECO:000031... [more] |
| A0A5B6YGS5 | E-Value: 3.310e-159, PID: 51.39 | (Uncharacterized protein {ECO:0000313|EMBL:MPA3093... [more] |
| A0A6J1EYX9 | E-Value: 1.129e-158, PID: 46.00 | (ALBINO3-like protein 2, chloroplastic isoform X1 ... [more] |
| A0A2R6PKS0 | E-Value: 1.608e-157, PID: 53.16 | (ALBINO3-like protein {ECO:0000313|EMBL:PSR92941.1... [more] |
| A0A6J1ICK0 | E-Value: 2.227e-157, PID: 49.70 | (ALBINO3-like protein 2, chloroplastic isoform X1 ... [more] |
| A0A2P6R5A8 | E-Value: 6.315e-157, PID: 45.19 | (Putative membrane insertase OXA1/ALB3/YidC, tetra... [more] |
| A0A200R0R4 | E-Value: 3.701e-154, PID: 48.59 | (Membrane insertase OXA1/ALB3/YidC {ECO:0000313|EM... [more] |
| A0A6J1A644 | E-Value: 4.875e-154, PID: 48.80 | (ALBINO3-like protein 2, chloroplastic isoform X2 ... [more] |
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |
