XM_017367338.1 | CarrotOmics

Resource Type:

Polypeptide

Name:

XM_017367338.1

Identifier:

XM_017367338.1-protein

Sequence:

MASLHFSALSNVGSLYSAVHPRSILPTNVVKPFKLTSQKVVSFSSSSFFA
GSSSLHIAPLTSSFRNAAPLVASVRAMAQEAELQSKVTQKVFFDISIGNP
EGKPVGRVVIGLFGDDVPKTTENFRALCTGEKGFGYKGSAFHRVIKKFMI
QGGDFDKGNGTGGKSIYGRTFKDENFKLTHTGPGIVSMANAGPNTNGSQF
FICTEPTPWLDKNHVVFGQVIEGMDVVKLIESQETDRGDRPRLKVVISDC
GELPLV

Sequence Length:

256

Sequence Checksum:

c6d0f89d9bd22cd427b995b9dec58faf

View location in JBrowse:

DCARv2_Chr8:31631114..31635692-

Organism:

Daucus carota subspecies sativus

Relationship:

There is 1 relationship.
Relationships
The polypeptide, XM_017367338.1, derives from mRNA, XM_017367338.1.

Blast Results:

The following BLAST results are available for this feature:

BLAST of XM_017367338.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR

BLAST of XM_017367338.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10

[Close]

BLAST of XM_017367338.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0F7GYZ3 (Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU363019} (PPIase {ECO:0000256|RuleBase:RU363019}) (5.2.1.8 {ECO:0000256|RuleBase:RU363019}))

HSP 1 Score: 359.377 bits (921), Expect = 4.123e-124
Identity = 185/253 (73.12%), Postives = 200/253 (79.05%), Query Frame = 0

Query:    6 FSALSNVGSLYSAVHPRSILPTN-VVKPFKLTSQKVVSFSSSSFFAGSSSL-HIAPLTSSFRNAAPLVASVRAMAQEAELQSKVTQKVFFDISIGNPEGKPVGRVVIGLFGDDVPKTTENFRALCTGEKGFGYKGSAFHRVIKKFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLTHTGPGIVSMANAGPNTNGSQFFICTEPTPWLDKNHVVFGQVIEGMDVVKLIESQETDRGDRPRLKVVISDCGELPLV 256
            F++L NV SL SA  PRSI   N V        QK  S S   FF+GSS L  + P +S F       +SVRA AQE  LQ+KVT KV+FDISIGNP GKP GRVVIGLFGDDVP+T ENFRALCTGEKGFG+K SAFHRVIK FMIQGGDFDKGNGTGGKSIYGRTF DENFKLTH GPG+VSMANAGPNTNGSQFFICT  TPWLD+ HVVFGQV+EGM+ VKLIESQETDRGDRPR KVVI DCGELP+V
Sbjct:    5 FASLPNVASLSSA--PRSIACVNSVTVTCSAVDQKRRSLS---FFSGSSRLVRLTPTSSLFSRRKAGFSSVRASAQEVPLQAKVTNKVYFDISIGNPAGKPAGRVVIGLFGDDVPQTAENFRALCTGEKGFGFKDSAFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFNDENFKLTHVGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMETVKLIESQETDRGDRPRQKVVIFDCGELPVV 252

[Close]

BLAST of XM_017367338.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P5BSU5 (Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU363019} (PPIase {ECO:0000256|RuleBase:RU363019}) (5.2.1.8 {ECO:0000256|RuleBase:RU363019}))

HSP 1 Score: 357.451 bits (916), Expect = 4.011e-123
Identity = 185/261 (70.88%), Postives = 203/261 (77.78%), Query Frame = 0

Query:    6 FSALSNVGSLYSAVHPRSILPTNVVKPFKLTSQKVVSFS-------SSSFFAGSSSLHIAPLTSSF----RNAAPLVASVRAMAQEAELQSKVTQKVFFDISIGNPEGKPVGRVVIGLFGDDVPKTTENFRALCTGEKGFGYKGSAFHRVIKKFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLTHTGPGIVSMANAGPNTNGSQFFICTEPTPWLDKNHVVFGQVIEGMDVVKLIESQETDRGDRPRLKVVISDCGELPL 255
            F+ALSNVGSL  +   RS+    V+ P   +S K+   S       SS FF GSS L   PLT S     R    L++SVRA A+EA LQSKVT KV+FDISIGNP GK  GR+VIGLFGDDVP+T ENFRALCTGEKGFGYK S FHRVIK FMIQGGDFDKGNGTGGKSIYGRTFKDENFKL H GPG++SMANAGPNTNGSQFFICT  TPWLD+ HVVFGQV+EGMDVV+LIESQETDRGDRPR KV ISD GELP+
Sbjct:    5 FTALSNVGSLPGS---RSVSQMGVLSPTGRSSAKLRRVSLPSTITTSSDFFTGSSRL--IPLTPSSNLYSRRKTALLSSVRASAKEAPLQSKVTHKVYFDISIGNPVGKLAGRIVIGLFGDDVPQTAENFRALCTGEKGFGYKNSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLAHVGPGVISMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDVVRLIESQETDRGDRPRKKVTISDSGELPV 260

[Close]

BLAST of XM_017367338.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: W6ABY3 (Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU363019} (PPIase {ECO:0000256|RuleBase:RU363019}) (5.2.1.8 {ECO:0000256|RuleBase:RU363019}))

HSP 1 Score: 355.91 bits (912), Expect = 1.385e-122
Identity = 185/264 (70.08%), Postives = 211/264 (79.92%), Query Frame = 0

Query:    3 SLHFSALSNVGSL-----YSAVHPRSILPTNVVKPFKLTSQKVVSFSSSSFFAGSSSLHIAPL-----TSSFRNAAPLVASVRAMAQEAELQSKVTQKVFFDISIGNPEGKPVGRVVIGLFGDDVPKTTENFRALCTGEKGFGYKGSAFHRVIKKFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLTHTGPGIVSMANAGPNTNGSQFFICTEPTPWLDKNHVVFGQVIEGMDVVKLIESQETDRGDRPRLKVVISDCGELPLV 256
            ++ F+ALSNVGSL      S + P S      +   + ++    +  SSS FA    L ++PL     TSS R    +++SVRA A+ AELQSKVTQKV+FD+SIGNP GK VGR+VIGL+GDDVP+T ENFRALCTGEKGFGYKGSAFHRVIK FMIQGGDFDKGNGTGGKSIYGRTFKDENFKLTH GPG+VSMANAGPNTNGSQFFICT  TPWLD+ HVVFGQV+EGMD+VKLIESQETDRGDRPR KVVIS+CGELP+V
Sbjct:    2 AVPFTALSNVGSLSGPRNLSQIKPLSPAAYASINNVRKSALASDASLSSSLFA--PPLRLSPLKCSSNTSSHRKTG-ILSSVRASAEVAELQSKVTQKVYFDVSIGNPVGKLVGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSAFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLTHVGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPRKKVVISECGELPMV 262

[Close]

BLAST of XM_017367338.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: D7U5Y4 (Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU363019} (PPIase {ECO:0000256|RuleBase:RU363019}) (5.2.1.8 {ECO:0000256|RuleBase:RU363019}))

HSP 1 Score: 355.91 bits (912), Expect = 1.801e-122
Identity = 187/261 (71.65%), Postives = 205/261 (78.54%), Query Frame = 0

Query:    6 FSALSNVGSLYSAVHPRSILPTNVVKP----FKL--TSQKVVSFSSSSFFAGSSSLHIAPLTSSF----RNAAPLVASVRAMAQEAELQSKVTQKVFFDISIGNPEGKPVGRVVIGLFGDDVPKTTENFRALCTGEKGFGYKGSAFHRVIKKFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLTHTGPGIVSMANAGPNTNGSQFFICTEPTPWLDKNHVVFGQVIEGMDVVKLIESQETDRGDRPRLKVVISDCGELPLV 256
             + LSNVGSL S   PRS+     + P     KL  +       SSSS    S S  + PLTSS     R    L++S+RA AQEA LQSKVTQKV+FDISIGNP GK VGR+VIGLFGDDVP+T ENFRALCTGEKGFGYKGS FHRVIK FMIQGGDFDKGNGTGGKSIYGRTFKDENFKL H GPG+VSMANAGPNTNGSQFFICT  TPWLD+ HVVFGQV+EGMD+VKL+ESQETDRGDRPR KVVIS+CGELP+V
Sbjct:    5 LTTLSNVGSLSS---PRSVAQIKALGPTCNALKLPRSPFPSNVSSSSSSSFVSGSFRLVPLTSSLNPCSRRRTGLLSSLRASAQEAPLQSKVTQKVYFDISIGNPVGKVVGRIVIGLFGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLAHVGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLVESQETDRGDRPRKKVVISECGELPMV 262

[Close]

BLAST of XM_017367338.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0F7CYQ1 (Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU363019} (PPIase {ECO:0000256|RuleBase:RU363019}) (5.2.1.8 {ECO:0000256|RuleBase:RU363019}))

HSP 1 Score: 355.14 bits (910), Expect = 2.338e-122
Identity = 183/254 (72.05%), Postives = 205/254 (80.71%), Query Frame = 0

Query:    6 FSALSNVGSLYSAVHPRSILPTNVV--KPFKLTSQKVV--SFSSSSFFAGSSSLHIAPLTSSFRNAAPLVASVRAMAQEAELQSKVTQKVFFDISIGNPEGKPVGRVVIGLFGDDVPKTTENFRALCTGEKGFGYKGSAFHRVIKKFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLTHTGPGIVSMANAGPNTNGSQFFICTEPTPWLDKNHVVFGQVIEGMDVVKLIESQETDRGDRPRLKVVISDCGELPL 255
            FSAL+NVGS Y+   PR++  T+V   +P  L S +    S S SS   G  SL  +  +   R  +  V S RA  QEAELQ+KVTQKV+FDISIGNPEGK VGR+V+GLFGDDVP+T ENFRALCTGEKGFG+KGS FHRVIK FMIQGGDFDKGNGTGGKSIYGRTFKDENFKL H GPG++SMANAGPNTNGSQFFICT  TPWLD+ HVVFGQV+EGMD+VKLIESQETDRGDRPR KVVISDCGELP+
Sbjct:    5 FSALANVGSSYAG--PRNLRRTHVAVSRPSDLPSFRKCPSSVSWSSSVCGGRSLSRSLYSGQRRTGS--VGSARAALQEAELQAKVTQKVYFDISIGNPEGKLVGRIVMGLFGDDVPQTAENFRALCTGEKGFGFKGSMFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLAHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPRKKVVISDCGELPM 254

[Close]

BLAST of XM_017367338.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P3ZQY7 (Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU363019} (PPIase {ECO:0000256|RuleBase:RU363019}) (5.2.1.8 {ECO:0000256|RuleBase:RU363019}))

HSP 1 Score: 352.829 bits (904), Expect = 1.994e-121
Identity = 181/260 (69.62%), Postives = 205/260 (78.85%), Query Frame = 0

Query:    6 FSALSNVGSLYSAVHPRSILPTNVVKP------FKLTSQKVVSFSSSSFFAGSSSLHIAPLTSSF----RNAAPLVASVRAMAQEAELQSKVTQKVFFDISIGNPEGKPVGRVVIGLFGDDVPKTTENFRALCTGEKGFGYKGSAFHRVIKKFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLTHTGPGIVSMANAGPNTNGSQFFICTEPTPWLDKNHVVFGQVIEGMDVVKLIESQETDRGDRPRLKVVISDCGELPL 255
            F++LSNVGSL S+   RS+    V  P       +  +   +  +S SFF GS  L + PLTSS     R     ++SVRA A++A LQSKVT KV+FDISIGNP GK  GR+VIGL+GDDVP+T ENFRALCTGEKGFGYKGSAFHRVIK FMIQGGDFDKGNGTGGKSIYGRTFKDENFKL+H GPG++SMANAGPNTNGSQFFICT  TPWLD+ HVVFGQV+EGMDVV+LIESQETDRGDRP  KVVISD GELP+
Sbjct:    5 FTSLSNVGSLPSS---RSVSQIRVFNPTCNSTKLRRVALPSIGTTSLSFFTGS--LRLPPLTSSSNLYSRRKPGFLSSVRASAEDATLQSKVTHKVYFDISIGNPVGKLAGRIVIGLYGDDVPQTVENFRALCTGEKGFGYKGSAFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLSHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDVVRLIESQETDRGDRPTKKVVISDSGELPV 259

[Close]

BLAST of XM_017367338.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P5F231 (Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU363019} (PPIase {ECO:0000256|RuleBase:RU363019}) (5.2.1.8 {ECO:0000256|RuleBase:RU363019}))

HSP 1 Score: 352.829 bits (904), Expect = 2.329e-121
Identity = 184/261 (70.50%), Postives = 201/261 (77.01%), Query Frame = 0

Query:    6 FSALSNVGSLYSAVHPRSILPTNVVKPFKLTSQKVVSFS-------SSSFFAGSSSLHIAPLTSSF----RNAAPLVASVRAMAQEAELQSKVTQKVFFDISIGNPEGKPVGRVVIGLFGDDVPKTTENFRALCTGEKGFGYKGSAFHRVIKKFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLTHTGPGIVSMANAGPNTNGSQFFICTEPTPWLDKNHVVFGQVIEGMDVVKLIESQETDRGDRPRLKVVISDCGELPL 255
            F+ALSNVGSL  +   RS+    V+ P   +S K+   S       SS  F GSS L   PLT S     R    L++SVRA A+ A LQSKVT KV+FDISIGNP GK  GR+VIGLFGDDVP+T ENFRALCTGEKGFGYK S FHRVIK FMIQGGDFDKGNGTGGKSIYGRTFKDENFKL H GPG+VSMANAGPNTNGSQFFICT  TPWLD+ HVVFGQV+EGMDVV+LIESQETDRGDRPR KV ISD GELP+
Sbjct:    5 FTALSNVGSLPGS---RSVSQMGVLSPTGRSSAKLRRVSLPSTITTSSDSFTGSSRL--IPLTPSSNLYSRRKTALLSSVRASAEAAPLQSKVTHKVYFDISIGNPVGKLAGRIVIGLFGDDVPQTAENFRALCTGEKGFGYKNSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLAHVGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDVVRLIESQETDRGDRPRKKVTISDSGELPV 260

[Close]

BLAST of XM_017367338.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2J6KYI4 (Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU363019} (PPIase {ECO:0000256|RuleBase:RU363019}) (5.2.1.8 {ECO:0000256|RuleBase:RU363019}))

HSP 1 Score: 352.443 bits (903), Expect = 2.403e-121
Identity = 179/257 (69.65%), Postives = 202/257 (78.60%), Query Frame = 0

Query:    3 SLHFSALSNVGSLYSAVHPRSILPTNVVKPFKLTSQKVVSFSSSSFFAGSSSLHIAPLTSS---FRNAAPLVASVRAMAQEAELQSKVTQKVFFDISIGNPEGKPVGRVVIGLFGDDVPKTTENFRALCTGEKGFGYKGSAFHRVIKKFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLTHTGPGIVSMANAGPNTNGSQFFICTEPTPWLDKNHVVFGQVIEGMDVVKLIESQETDRGDRPRLKVVISDCGELPLV 256
            +L F++LSNVGSL ++   RSI P   V    L+S K+   +  +  +  S+      +++    R +  L  +VRA AQE   Q+KVT KVFFDISIGNP GK  GRVVIGLFGDDVP+T ENFRALCTGEKGFGYKGSAFHRVIK FMIQGGDFDKGNGTGGKSIYGRTFKDENF L HTGPGIVSMANAGPNTNGSQFFICT  TPWLD+ HVVFGQV+EGMD+VKLIESQ+TDRGDRP  +VVISDCGELPLV
Sbjct:    2 ALSFTSLSNVGSLSAS---RSISPVKAVHTSSLSSTKLGKSTLLASSSFLSNSLRLSSSTNPPFLRKSGGLTGTVRASAQEVATQAKVTNKVFFDISIGNPVGKLAGRVVIGLFGDDVPQTAENFRALCTGEKGFGYKGSAFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFNLVHTGPGIVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQQTDRGDRPVKRVVISDCGELPLV 255

[Close]

BLAST of XM_017367338.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7ZGN9 (Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU363019} (PPIase {ECO:0000256|RuleBase:RU363019}) (5.2.1.8 {ECO:0000256|RuleBase:RU363019}))

HSP 1 Score: 352.829 bits (904), Expect = 2.655e-121
Identity = 185/263 (70.34%), Postives = 204/263 (77.57%), Query Frame = 0

Query:    6 FSALSNVGSLYSAVHPRSILPTNVVKPF--KLTSQKVVSFSS----SSFFAGSSSLHIAPLTSS------FRNAAPLVASVRAMAQEAELQSKVTQKVFFDISIGNPEGKPVGRVVIGLFGDDVPKTTENFRALCTGEKGFGYKGSAFHRVIKKFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLTHTGPGIVSMANAGPNTNGSQFFICTEPTPWLDKNHVVFGQVIEGMDVVKLIESQETDRGDRPRLKVVISDCGELPLV 256
            F +++N+G+  S   PR+I    V+ P    L  QK  S S     S+F +GS  L   PL SS       RNA    +S RA AQEA LQSKVT KV+FDISIGNP GK  GR+VIGLFGDDVP+T ENFRALCTGEKGFGYKGS FHRVIK FMIQGGDFDKGNGTGGKSIYGRTFKDENFKL+H GPG+VSMANAGPNTNGSQFFICT  TPWLD+ HVVFGQV+EGMDVVKLIESQETDRGDRP+ KV ISDCGELP+V
Sbjct:    5 FPSIANIGTRVSG--PRTISQCKVISPSCNTLRLQKCTSPSDISSLSTFLSGS--LLCPPLRSSSFPSSQRRNA--FFSSTRASAQEAPLQSKVTNKVYFDISIGNPVGKLAGRIVIGLFGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDVVKLIESQETDRGDRPKKKVAISDCGELPMV 261

[Close]

BLAST of XM_017367338.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6S7MLN0 (Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU363019} (PPIase {ECO:0000256|RuleBase:RU363019}) (5.2.1.8 {ECO:0000256|RuleBase:RU363019}))

HSP 1 Score: 352.058 bits (902), Expect = 3.682e-121
Identity = 179/257 (69.65%), Postives = 203/257 (78.99%), Query Frame = 0

Query:    3 SLHFSALSNVGSLYSAVHPRSILPTNVVKPFKLTSQKVVSFSSSSFFAGSSSLHIAPLTSS---FRNAAPLVASVRAMAQEAELQSKVTQKVFFDISIGNPEGKPVGRVVIGLFGDDVPKTTENFRALCTGEKGFGYKGSAFHRVIKKFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLTHTGPGIVSMANAGPNTNGSQFFICTEPTPWLDKNHVVFGQVIEGMDVVKLIESQETDRGDRPRLKVVISDCGELPLV 256
            +L F++LSNVGSL ++   RSI P   V    L+S K+   +  +  +  S+      +++    + ++ L  SVRA AQE   Q+KVT KVFFDISIGNP GK  GRVVIGLFGDDVP+T ENFRALCTGEKGFGYKGSAFHRVIK FMIQGGDFDKGNGTGGKSIYGRTFKDENF L HTGPGIVSMANAGPNTNGSQFFICT  TPWLD+ HVVFGQV+EGMD+VKLIESQ+TDRGDRP  +VVISDCGELPLV
Sbjct:    2 ALSFTSLSNVGSLSAS---RSISPVKAVHTSSLSSTKLGKSTLLTSSSFLSNSLRLSSSTNPPFLKKSSGLTGSVRASAQEVATQAKVTNKVFFDISIGNPVGKLAGRVVIGLFGDDVPQTAENFRALCTGEKGFGYKGSAFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFNLVHTGPGIVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQQTDRGDRPVKRVVISDCGELPLV 255


Match Name	Stats	Description
A0A0F7GYZ3	E-Value: 4.123e-124, PID: 73.12	Peptidyl-prolyl cis-trans isomerase {ECO:0000256\|R... [more]
A0A2P5BSU5	E-Value: 4.011e-123, PID: 70.88	Peptidyl-prolyl cis-trans isomerase {ECO:0000256\|R... [more]
W6ABY3	E-Value: 1.385e-122, PID: 70.08	Peptidyl-prolyl cis-trans isomerase {ECO:0000256\|R... [more]
D7U5Y4	E-Value: 1.801e-122, PID: 71.65	Peptidyl-prolyl cis-trans isomerase {ECO:0000256\|R... [more]
A0A0F7CYQ1	E-Value: 2.338e-122, PID: 72.05	Peptidyl-prolyl cis-trans isomerase {ECO:0000256\|R... [more]
A0A6P3ZQY7	E-Value: 1.994e-121, PID: 69.62	Peptidyl-prolyl cis-trans isomerase {ECO:0000256\|R... [more]
A0A2P5F231	E-Value: 2.329e-121, PID: 70.50	Peptidyl-prolyl cis-trans isomerase {ECO:0000256\|R... [more]
A0A2J6KYI4	E-Value: 2.403e-121, PID: 69.65	Peptidyl-prolyl cis-trans isomerase {ECO:0000256\|R... [more]
A0A1U7ZGN9	E-Value: 2.655e-121, PID: 70.34	Peptidyl-prolyl cis-trans isomerase {ECO:0000256\|R... [more]
A0A6S7MLN0	E-Value: 3.682e-121, PID: 69.65	Peptidyl-prolyl cis-trans isomerase {ECO:0000256\|R... [more]

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100	The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR	This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.