Resource Type:
Polypeptide
Name:
XM_017370842.1
Identifier:
XM_017370842.1-protein
Sequence:
MTGNTIAGDSSNDEKRRRVIISSRIPSPSPIFDDASTADVILRLYIDNSE
DDADISAGADQSDVVLYLHSSVLSKSKYFDALLSGRWQNDTDSASKLKVS
LRVTNVLIEDYVNVIKLLYCDDFTDVICSVAIAIAILPVALELLFEDCVK
ACVRFLEAVPWTEDEERMVIALVPMLKREECEKLLARVLPEQVNSSEEML
YELLVVAIHNLSNMAFAKAFVAKLLRDYSCKESARRVLDRVFLKTLKEVK
YSLEEYSRPEFRVDNNETEAIQRLHLHTAMKSGRNLLWIIERMVELGVAD
LAVVEWTNQDSLTTDLQRAFRDEAWRNIVPALPGVVLRCTSKLANVVVSG
SILVDRKVRMKLVEDWLPVLRVCKENVSPGISNYKSLYLELEETFLKITS
TLPMADSQMLLKECLSFSTRNVDDCPHLVTAFNTWFRRANQPPPPTHPAD
NIL
Sequence Length:
453
Sequence Checksum:
9616dc6cc12048e8cbef5dcfbd63fb18
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017370842.1, derives from mRNA, XM_017370842.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017370842.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017370842.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6VTB6 ((BTB/POZ domain-containing protein At3g05675-like isoform X1 {ECO:0000313|RefSeq:XP_027105760.1, ECO:0000313|RefSeq:XP_027112264.1}))
HSP 1 Score: 557.37 bits (1435), Expect = 0.000e+0
Identity = 274/427 (64.17%), Postives = 340/427 (79.63%), Query Frame = 0
Match: A0A6P6VTB6 ((BTB/POZ domain-containing protein At3g05675-like isoform X1 {ECO:0000313|RefSeq:XP_027105760.1, ECO:0000313|RefSeq:XP_027112264.1}))
HSP 1 Score: 557.37 bits (1435), Expect = 0.000e+0
Identity = 274/427 (64.17%), Postives = 340/427 (79.63%), Query Frame = 0
Query: 32 FDDASTADVILRLYIDNSE----DDADISAGADQSDVVLYLHSSVLSKSKYFDALLSGRWQNDTDSASKLKVS----------LRVTNVLIEDYVNVIKLLYCDDFTDVICSVAIAIAILPVALELLFEDCVKACVRFLEAVPWTEDEERMVIALVPMLKREECEKLLARVLPEQVNSSEEMLYELLVVAIHNLSNMAFAKAFVAKLLRDYSCKESARRVLDRVFLKTLKEVKYSLEEYSRPEFRVDNNETEAIQRLHLHTAMKSGRNLLWIIERMVELGVADLAVVEWTNQDSLTTDLQRAFRDEAWRNIVPALPGVVLRCTSKLANVVVSGSILVDRKVRMKLVEDWLPVLRVCKENVSPGISNYKSLYLELEETFLKITSTLPMADSQMLLKECLSFSTRNVDDCPHLVTAFNTWFRRANQPPP 444
F+DASTADV+LRLY++NS DD++ + DQ+DV +YLHS VL +S+YF ALLS RW ++ A + VS + T I+ ++ V++LLY +DF+DV+ + + A+++LPVALELLFEDCV+ACVRFLEAVPWTEDEE+ V+ LVP L EE ++LLARV P +++SSEEML+ L++ AIHN N AFAKAFVAKLLRD+S KESARRVLDR F +LK VK SLEEYS P+FR D+NETEAIQRL+LHTAM +GR+LLW++ERM+EL VAD A EW++Q S T DLQRAFRD+AWRNIVP LP VVLRCT KLAN V +G+IL R+VRMKLV+DWLPVL +CKENVS +S++KSLY ELEETFL+I STLPM+D+Q LL++CLSFSTRNVDDCPHLVTAF TWFRRAN+ P
Sbjct: 75 FNDASTADVVLRLYVENSSPFLSDDSESISAVDQADVQIYLHSGVLRRSRYFSALLSDRWHKESCPADDVVVSSPVIYRFNLGVSATYGSIDYHLTVLQLLYTNDFSDVVDTASTALSLLPVALELLFEDCVRACVRFLEAVPWTEDEEKKVLGLVPFLSDEESQELLARVSPGKIDSSEEMLHGLIMSAIHNHPNTAFAKAFVAKLLRDFSSKESARRVLDRAFETSLKIVKESLEEYSSPDFRGDHNETEAIQRLNLHTAMTNGRHLLWLVERMIELRVADTAAEEWSDQASFTADLQRAFRDDAWRNIVPGLPAVVLRCTCKLANAVATGNILAARQVRMKLVKDWLPVLIICKENVSHMMSSHKSLYQELEETFLRIISTLPMSDAQELLQQCLSFSTRNVDDCPHLVTAFTTWFRRANRSLP 501
BLAST of XM_017370842.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7HI34 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5951648.1}))
HSP 1 Score: 550.436 bits (1417), Expect = 0.000e+0
Identity = 275/423 (65.01%), Postives = 338/423 (79.91%), Query Frame = 0
Match: A0A7J7HI34 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5951648.1}))
HSP 1 Score: 550.436 bits (1417), Expect = 0.000e+0
Identity = 275/423 (65.01%), Postives = 338/423 (79.91%), Query Frame = 0
Query: 32 FDDASTADVILRLYID-NSEDDADISA--GADQSDVVLYLHSSVLSKSKYFDALLSGRWQ---NDTDSASKLKV-----SLRVTNVLIEDYVNVIKLLYCDDFTDVICSVAIAIAILPVALELLFEDCVKACVRFLEAVPWTEDEERMVIALVPMLKREECEKLLARVLPEQVNSSEEMLYELLVVAIHNLSNMAFAKAFVAKLLRDYSCKESARRVLDRVFLKTLKEVKYSLEEYSRPEFRVDNNETEAIQRLHLHTAMKSGRNLLWIIERMVELGVADLAVVEWTNQDSLTTDLQRAFRDEAWRNIVPALPGVVLRCTSKLANVVVSGSILVDRKVRMKLVEDWLPVLRVCKENVSPGISNYKSLYLELEETFLKITSTLPMADSQMLLKECLSFSTRNVDDCPHLVTAFNTWFRRANQPP 443
F+D++TADVILRLY++ S D+D SA DQ++ +YLHS VL +SKYF ALLS RW+ D D S K+ + T I++++ V++LLY +DF+ VI V+ A+ ILPVALELLFEDCV++CVRFLEAVPWTE+EE+M+++ VP L+ EE ++LLARV P + +SS EML+ L++ AIHN NMAFAKAFVAKLLRD+S +ESARRVLD F +LK VK SLEEYS P FR D+NETEAIQRL+LHTAM +GR+LLW+IERM+EL VAD AV W+ QDS T DLQRAFRD+AWRNIVP LP VVLRCT KLAN V +G+IL DR+VRMKLV+DWLPVL VCK++VSP + ++KSLYLELEETFLKI STLPM D+Q LL++CLSFSTRNV+DCPHLVTAFNTWFRRA +PP
Sbjct: 72 FNDSATADVILRLYLELPSPFDSDDSAVGSVDQAEFQVYLHSDVLRRSKYFAALLSDRWKRESGDMDPESSRKIYRFNLGVAATTGSIDNHLTVLQLLYTNDFSTVIDCVSTALLILPVALELLFEDCVRSCVRFLEAVPWTEEEEKMILSFVPFLRDEESKELLARVSPAKNDSSVEMLHGLILTAIHNHPNMAFAKAFVAKLLRDFSSRESARRVLDLAFETSLKIVKESLEEYSSPAFRGDHNETEAIQRLNLHTAMTNGRHLLWLIERMIELRVADNAVKAWSEQDSFTADLQRAFRDDAWRNIVPGLPAVVLRCTCKLANAVAAGTILADRQVRMKLVKDWLPVLNVCKDHVSPMLPSHKSLYLELEETFLKIISTLPMLDAQELLQQCLSFSTRNVEDCPHLVTAFNTWFRRATRPP 494
BLAST of XM_017370842.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2J6L192 (BTB domain-containing protein {ECO:0000259|PROSITE:PS50097})
HSP 1 Score: 546.969 bits (1408), Expect = 0.000e+0
Identity = 271/434 (62.44%), Postives = 342/434 (78.80%), Query Frame = 0
Match: A0A2J6L192 (BTB domain-containing protein {ECO:0000259|PROSITE:PS50097})
HSP 1 Score: 546.969 bits (1408), Expect = 0.000e+0
Identity = 271/434 (62.44%), Postives = 342/434 (78.80%), Query Frame = 0
Query: 21 ISSRIPSPSPIFDDASTADVILRLYIDNSE----DDADISAGADQ-SDVVLYLHSSVLSKSKYFDALLSGRWQNDTDSASKLKVSLRVTNVLIEDYVNVIKLLYCDDFTDVICSVAIAIAILPVALELLFEDCVKACVRFLEAVPWTEDEERMVIALVPMLKREECEKLLARVLPEQVNSSEEMLYELLVVAIHNLSNMAFAKAFVAKLLRDYSCKESARRVLDRVFLKTLKEVKYSLEEYSRPEFRVDNNETEAIQRLHLHTAMKSGRNLLWIIERMVELGVADLAVVEWTNQDSLTTDLQRAFRDEAWRNIVPALPGVVLRCTSKLANVVVSGSILVDRKVRMKLVEDWLPVLRVCKENVSPGISNYKSLYLELEETFLKITSTLPMADSQMLLKECLSFSTRNVDDCPHLVTAFNTWFRRAN-QPPPPTHP 448
I+S +P+ F+D +TADVILRLY+D S DD++ + D S+ +YLHSSVL +SKYF ALLS RW+ D+ + +L VT I ++V V++LLY ++ + I + + A+ +LP+ALELLFEDCV ACVR+LEAVPWTE+EE +V++++P+L+ EE +LLARV P + + SEEML+ L++ AIHN NMAFAKAFVAKLLRD+S +ESARRVLD+ F +LK VK SLEEYS P+FR D+NETEAIQRL+LHTAM +GR+LLW+IERM+EL VAD AV EW+ Q S T DLQRAFRD+AWRNIVP LP VVLRCT KLAN V SG IL R+VRMK+V+DWLPVL VCK+NV+P ++N+KSLYLELEETFLKI STLPM+++Q LL++CLSFSTRNV+DCPHLV+AF TWFRRAN Q P HP
Sbjct: 65 IASSVPNG---FNDPNTADVILRLYLDQSSPFDSDDSETAVAVDSTSEFEIYLHSSVLRRSKYFSALLSDRWKKDSGEVDYYRFNLAVTAGSINNHVTVLQLLYTNEISSTIDTASKALELLPIALELLFEDCVTACVRYLEAVPWTEEEEIIVLSIIPLLRDEESVELLARVSPPKSDLSEEMLHGLILTAIHNHPNMAFAKAFVAKLLRDFSSRESARRVLDKSFETSLKVVKESLEEYSSPDFRGDHNETEAIQRLNLHTAMTNGRHLLWLIERMIELRVADTAVKEWSEQASFTADLQRAFRDDAWRNIVPGLPAVVLRCTCKLANAVASGVILASRQVRMKMVKDWLPVLIVCKDNVTPMLTNHKSLYLELEETFLKIISTLPMSEAQELLQQCLSFSTRNVEDCPHLVSAFTTWFRRANRQLPGDQHP 495
BLAST of XM_017370842.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834YDB8 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8377942.1}))
HSP 1 Score: 545.428 bits (1404), Expect = 0.000e+0
Identity = 270/420 (64.29%), Postives = 337/420 (80.24%), Query Frame = 0
Match: A0A834YDB8 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8377942.1}))
HSP 1 Score: 545.428 bits (1404), Expect = 0.000e+0
Identity = 270/420 (64.29%), Postives = 337/420 (80.24%), Query Frame = 0
Query: 32 FDDASTADVILRLYIDNSEDDADISAGAD---QSDVVLYLHSSVLSKSKYFDALLSGRWQNDT---DSASKLKVSLRVTNVL--IEDYVNVIKLLYCDDFTDVICSVAIAIAILPVALELLFEDCVKACVRFLEAVPWTEDEERMVIALVPMLKREECEKLLARVLPEQVNSSEEMLYELLVVAIHNLSNMAFAKAFVAKLLRDYSCKESARRVLDRVFLKTLKEVKYSLEEYSRPEFRVDNNETEAIQRLHLHTAMKSGRNLLWIIERMVELGVADLAVVEWTNQDSLTTDLQRAFRDEAWRNIVPALPGVVLRCTSKLANVVVSGSILVDRKVRMKLVEDWLPVLRVCKENVSPGISNYKSLYLELEETFLKITSTLPMADSQMLLKECLSFSTRNVDDCPHLVTAFNTWFRRANQPP 443
F+D++TADVILRLY++ S D + + D Q++V L+LHSSVL +S+YF ALLS RW+ D+ DS ++SLRV + I+ ++ V++LLY +DF I + + A+ ILPVALELLFEDCV ACVRFLEAVPWTE+EE+ V +L+P L+ EE ++LLARV P + SEEML+ L++ AIHN NMAF KAFVAKLLRD+S ++SARRVLDR F ++LK VK SLEEYS P+FR D+NETEAIQRL+LHTAM +GR+LLW+IERM+EL VAD AV EW++Q S T DLQRAFRD+AWRNIVP LP VVLRCT +LAN V +GSIL R+VRMKLV+DWLPVL VCK+N S + ++KSLYLELEETFL+I STLPM+D+Q LL++CLSFSTRNV+DCPHLV+AFNTWFRRA QPP
Sbjct: 57 FNDSATADVILRLYLEPSPSDPEPVSSVDSIDQAEVHLHLHSSVLRRSQYFSALLSDRWKRDSGGEDSGDGFRLSLRVPASIGSIDTHLTVLQLLYTNDFFREIDTASSALRILPVALELLFEDCVAACVRFLEAVPWTEEEEKRVSSLIPFLREEESQELLARVSPAKSGLSEEMLHGLILAAIHNYPNMAFVKAFVAKLLRDFSSRDSARRVLDRAFDRSLKIVKESLEEYSSPDFRGDHNETEAIQRLNLHTAMTNGRHLLWLIERMIELRVADTAVKEWSDQASFTADLQRAFRDDAWRNIVPGLPAVVLRCTCRLANAVAAGSILAARQVRMKLVKDWLPVLIVCKDNNSSILPSHKSLYLELEETFLRIISTLPMSDAQELLQQCLSFSTRNVEDCPHLVSAFNTWFRRATQPP 476
BLAST of XM_017370842.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8DXI9 ((BTB/POZ domain-containing protein At3g05675-like {ECO:0000313|RefSeq:XP_016539743.1}))
HSP 1 Score: 545.043 bits (1403), Expect = 0.000e+0
Identity = 270/459 (58.82%), Postives = 354/459 (77.12%), Query Frame = 0
Match: A0A1U8DXI9 ((BTB/POZ domain-containing protein At3g05675-like {ECO:0000313|RefSeq:XP_016539743.1}))
HSP 1 Score: 545.043 bits (1403), Expect = 0.000e+0
Identity = 270/459 (58.82%), Postives = 354/459 (77.12%), Query Frame = 0
Query: 4 NTIAGDSSNDEKRRRVIISSRIPSPSPI-----FDDASTADVILRLYID-----NSEDDADISA-GADQSDVVLYLHSSVLSKSKYFDALLSGRWQ---NDTDSAS-----KLKVSLRVTNVLIEDYVNVIKLLYCDDFTDVICSVAIAIAILPVALELLFEDCVKACVRFLEAVPWTEDEERMVIALVPMLKREECEKLLARVLPEQVNSSEEMLYELLVVAIHNLSNMAFAKAFVAKLLRDYSCKESARRVLDRVFLKTLKEVKYSLEEYSRPEFRVDNNETEAIQRLHLHTAMKSGRNLLWIIERMVELGVADLAVVEWTNQDSLTTDLQRAFRDEAWRNIVPALPGVVLRCTSKLANVVVSGSILVDRKVRMKLVEDWLPVLRVCKENVSPGISNYKSLYLELEETFLKITSTLPMADSQMLLKECLSFSTRNVDDCPHLVTAFNTWFRRANQPP 443
NT+ S RR + IP S F+D++TADV+LRL++D +++D ISA +DQSDV +YLHS VL +SKYF ALLS RWQ ND DS + + + + T ++ ++ V++LLY +DF+ I +V+IA+++LPVALELLFEDC+KACVRFLEAVPWTEDEER ++++VP+L EE ++LLARV ++ SSEEML+ L++ A+HN NMAFAKAFVAKLLRD+S KE+A+RVLDR F +LK VK SLEEYS P+FR D+NETEAIQRL+LHTAM +GR+LLW++ERM+EL VAD AV EW+NQ S T DL RA RD+AWRNIVP LP VVLRCT KL+N V +G+IL R+VRMK+V+DWLPVL +CK+NV+P + ++K++YLELE+TFL+I STLP++D+Q LL++CLSFSTRNV+DCPHL++AF TWFRRAN+ P
Sbjct: 42 NTLTERSQKPSGIRRTSSHAVIPPSSSFTASGGFNDSATADVVLRLFVDQLPLFDTDDSESISAVDSDQSDVQIYLHSDVLRRSKYFAALLSDRWQKESNDGDSGNSSRMFRFNLGVPATPSSVDHHLTVLQLLYSNDFSTTIHNVSIALSVLPVALELLFEDCIKACVRFLEAVPWTEDEERKILSIVPLLGDEESQELLARVSIDKNASSEEMLHGLILSALHNHPNMAFAKAFVAKLLRDFSSKEAAKRVLDRAFQSSLKIVKESLEEYSSPDFRGDHNETEAIQRLNLHTAMTNGRHLLWLVERMIELRVADTAVQEWSNQASFTADLLRALRDDAWRNIVPGLPAVVLRCTCKLSNAVATGTILATRQVRMKIVKDWLPVLILCKDNVTPMMPSHKTVYLELEDTFLRIISTLPLSDAQELLQQCLSFSTRNVEDCPHLISAFTTWFRRANRFP 500
BLAST of XM_017370842.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G2WA86 ((Uncharacterized protein {ECO:0000313|EMBL:PHT42079.1}))
HSP 1 Score: 545.043 bits (1403), Expect = 0.000e+0
Identity = 270/459 (58.82%), Postives = 354/459 (77.12%), Query Frame = 0
Match: A0A2G2WA86 ((Uncharacterized protein {ECO:0000313|EMBL:PHT42079.1}))
HSP 1 Score: 545.043 bits (1403), Expect = 0.000e+0
Identity = 270/459 (58.82%), Postives = 354/459 (77.12%), Query Frame = 0
Query: 4 NTIAGDSSNDEKRRRVIISSRIPSPSPI-----FDDASTADVILRLYID-----NSEDDADISA-GADQSDVVLYLHSSVLSKSKYFDALLSGRWQ---NDTDSAS-----KLKVSLRVTNVLIEDYVNVIKLLYCDDFTDVICSVAIAIAILPVALELLFEDCVKACVRFLEAVPWTEDEERMVIALVPMLKREECEKLLARVLPEQVNSSEEMLYELLVVAIHNLSNMAFAKAFVAKLLRDYSCKESARRVLDRVFLKTLKEVKYSLEEYSRPEFRVDNNETEAIQRLHLHTAMKSGRNLLWIIERMVELGVADLAVVEWTNQDSLTTDLQRAFRDEAWRNIVPALPGVVLRCTSKLANVVVSGSILVDRKVRMKLVEDWLPVLRVCKENVSPGISNYKSLYLELEETFLKITSTLPMADSQMLLKECLSFSTRNVDDCPHLVTAFNTWFRRANQPP 443
NT+ S RR + IP S F+D++TADV+LRL++D +++D ISA +DQSDV +YLHS VL +SKYF ALLS RWQ ND DS + + + + T ++ ++ V++LLY +DF+ I +V+IA+++LPVALELLFEDC+KACVRFLEAVPWTEDEER ++++VP+L EE ++LLARV ++ SSEEML+ L++ A+HN NMAFAKAFVAKLLRD+S KE+A+RVLDR F +LK VK SLEEYS P+FR D+NETEAIQRL+LHTAM +GR+LLW++ERM+EL VAD AV EW+NQ S T DL RA RD+AWRNIVP LP VVLRCT KL+N V +G+IL R+VRMK+V+DWLPVL +CK+NV+P + ++K++YLELE+TFL+I STLP++D+Q LL++CLSFSTRNV+DCPHL++AF TWFRRAN+ P
Sbjct: 50 NTLTERSQKPSGIRRTSSHAAIPPSSSFTASGGFNDSATADVVLRLFVDQLPLFDTDDSESISAVDSDQSDVQIYLHSDVLRRSKYFAALLSDRWQKESNDGDSGNSSRMFRFNLGVPATPSSVDHHLTVLQLLYSNDFSTTIHNVSIALSVLPVALELLFEDCIKACVRFLEAVPWTEDEERKILSIVPLLGDEESQELLARVSIDKNASSEEMLHGLILSALHNHPNMAFAKAFVAKLLRDFSSKEAAKRVLDRAFQSSLKIVKESLEEYSSPDFRGDHNETEAIQRLNLHTAMTNGRHLLWLVERMIELRVADSAVQEWSNQASFTADLLRALRDDAWRNIVPGLPAVVLRCTCKLSNAVATGTILATRQVRMKIVKDWLPVLILCKDNVTPMMPSHKTVYLELEDTFLRIISTLPLSDAQELLQQCLSFSTRNVEDCPHLISAFTTWFRRANRFP 508
BLAST of XM_017370842.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G3BVV1 ((Uncharacterized protein {ECO:0000313|EMBL:PHU10603.1}))
HSP 1 Score: 544.658 bits (1402), Expect = 0.000e+0
Identity = 270/459 (58.82%), Postives = 355/459 (77.34%), Query Frame = 0
Match: A0A2G3BVV1 ((Uncharacterized protein {ECO:0000313|EMBL:PHU10603.1}))
HSP 1 Score: 544.658 bits (1402), Expect = 0.000e+0
Identity = 270/459 (58.82%), Postives = 355/459 (77.34%), Query Frame = 0
Query: 4 NTIAGDSSNDEKRRRVIISSRIP-----SPSPIFDDASTADVILRLYID-----NSEDDADISA-GADQSDVVLYLHSSVLSKSKYFDALLSGRWQ---NDTDSAS-----KLKVSLRVTNVLIEDYVNVIKLLYCDDFTDVICSVAIAIAILPVALELLFEDCVKACVRFLEAVPWTEDEERMVIALVPMLKREECEKLLARVLPEQVNSSEEMLYELLVVAIHNLSNMAFAKAFVAKLLRDYSCKESARRVLDRVFLKTLKEVKYSLEEYSRPEFRVDNNETEAIQRLHLHTAMKSGRNLLWIIERMVELGVADLAVVEWTNQDSLTTDLQRAFRDEAWRNIVPALPGVVLRCTSKLANVVVSGSILVDRKVRMKLVEDWLPVLRVCKENVSPGISNYKSLYLELEETFLKITSTLPMADSQMLLKECLSFSTRNVDDCPHLVTAFNTWFRRANQPP 443
NT+ S RR + IP + S F+D++TADV+LRL++D +++D ISA +DQSDV +YLHS VL +SKYF ALLS RWQ ND DS + + + + T ++ ++ V++LLY +DF+ I +V+IA+++LPVALELLFEDC+KACVRFLEAVPWTEDEER ++++VP+L EE ++LLARV ++ SSEEML+ L++ A+HN NMAFAKAFVAKLLRD+S KE+A+RVLDR F +LK VK SLEEYS P+FR D+NETEAIQRL+LHTAM +GR+LLW++ERM+EL VAD AV EW+NQ S T DL RA RD+AWRNIVP LP VVLRCT KL+N V +G+IL R+VRMK+V+DWLPVL +CK+NV+P + ++K++YLELE+TFL+I STLP++D+Q LL++CLSFSTRNV+DCPHL++AF TWFRRAN+ P
Sbjct: 42 NTLTERSQKPSGIRRTSSHAVIPPYSSFTASGGFNDSATADVVLRLFVDQLPLFDTDDSESISAVDSDQSDVQIYLHSDVLRRSKYFAALLSDRWQKESNDGDSGNSSRMFRFNLGVPATPSSVDHHLTVLQLLYSNDFSTTIHNVSIALSVLPVALELLFEDCIKACVRFLEAVPWTEDEERKILSIVPLLGDEESQELLARVSIDKNASSEEMLHGLILSALHNHPNMAFAKAFVAKLLRDFSSKEAAKRVLDRAFQSSLKIVKESLEEYSSPDFRGDHNETEAIQRLNLHTAMTNGRHLLWLVERMIELRVADTAVQEWSNQASFTADLLRALRDDAWRNIVPGLPAVVLRCTCKLSNAVATGTILATRQVRMKIVKDWLPVLILCKDNVTPMMPSHKTVYLELEDTFLRIISTLPLSDAQELLQQCLSFSTRNVEDCPHLISAFTTWFRRANRFP 500
BLAST of XM_017370842.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A103Y3Q7 ((BTB/POZ fold {ECO:0000313|EMBL:KVI01973.1}))
HSP 1 Score: 541.191 bits (1393), Expect = 0.000e+0
Identity = 269/439 (61.28%), Postives = 340/439 (77.45%), Query Frame = 0
Match: A0A103Y3Q7 ((BTB/POZ fold {ECO:0000313|EMBL:KVI01973.1}))
HSP 1 Score: 541.191 bits (1393), Expect = 0.000e+0
Identity = 269/439 (61.28%), Postives = 340/439 (77.45%), Query Frame = 0
Query: 16 RRRVIISSRIPSPSPI---FDDASTADVILRLYID-----NSEDDADISAGADQSDVVLYLHSSVLSKSKYFDALLSGRWQNDTDSASKLKVSLRVTNVL--IEDYVNVIKLLYCDDFTDVICSVAIAIAILPVALELLFEDCVKACVRFLEAVPWTEDEERMVIALVPMLKREECEKLLARVLPEQVNSSEEMLYELLVVAIHNLSNMAFAKAFVAKLLRDYSCKESARRVLDRVFLKTLKEVKYSLEEYSRPEFRVDNNETEAIQRLHLHTAMKSGRNLLWIIERMVELGVADLAVVEWTNQDSLTTDLQRAFRDEAWRNIVPALPGVVLRCTSKLANVVVSGSILVDRKVRMKLVEDWLPVLRVCKENVSPGISNYKSLYLELEETFLKITSTLPMADSQMLLKECLSFSTRNVDDCPHLVTAFNTWFRRANQPPP 444
RR S +P PSP+ F+D +TADVILRLY+D +S+D +SA S+ +YLHSSVL +SKYF ALLS RW+ D+ + +L V + I ++V V++LLY ++ + I S + A+ +LP+ALELLFEDCV ACVR+LEAVPWTE+EE+ V++L+P+L+ EE +LLARV P + + SEEML+ L++ AIHN NMAFAKAFVAKLLRD+S +ESARRVLD+ F +LK VK SLEEYS P+FR D+NETEAIQRL+LHTAM +GR+LLW+IERM+EL VAD AV EW+ Q + T DLQRAFRD+AWRNIVP LP VVLRCT KLAN V +G IL R+VRMKLV+DWLPVL VCK+N +P ++N+KSLYLELEE FLKI TLPM+++Q LL++CLSFSTRNV+DCPHLV+AF TWFRRAN+ P
Sbjct: 62 RRSNSRHSILPLPSPVSNGFNDPATADVILRLYLDQSSPFDSDDSETVSAVDSTSEFQIYLHSSVLQRSKYFSALLSDRWKKDSGEIDYYRFNLAVPSSAGSINNHVTVLQLLYTNEISSTIDSASTALELLPIALELLFEDCVTACVRYLEAVPWTEEEEKTVLSLIPLLRDEESSELLARVSPPKSDLSEEMLHGLILTAIHNHPNMAFAKAFVAKLLRDFSSRESARRVLDKSFETSLKVVKESLEEYSSPDFRGDHNETEAIQRLNLHTAMTNGRHLLWLIERMIELRVADTAVKEWSEQSAFTADLQRAFRDDAWRNIVPGLPAVVLRCTCKLANAVAAGVILASRQVRMKLVKDWLPVLIVCKDNGTPMLTNHKSLYLELEERFLKIILTLPMSEAQELLQQCLSFSTRNVEDCPHLVSAFTTWFRRANRQLP 500
BLAST of XM_017370842.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A022RFW5 ((Uncharacterized protein {ECO:0000313|EMBL:EYU37795.1}))
HSP 1 Score: 540.806 bits (1392), Expect = 0.000e+0
Identity = 264/435 (60.69%), Postives = 337/435 (77.47%), Query Frame = 0
Match: A0A022RFW5 ((Uncharacterized protein {ECO:0000313|EMBL:EYU37795.1}))
HSP 1 Score: 540.806 bits (1392), Expect = 0.000e+0
Identity = 264/435 (60.69%), Postives = 337/435 (77.47%), Query Frame = 0
Query: 26 PSPSPIFDDASTADVILRLYIDNSEDDADIS-----AGADQSDVVLYLHSSVLSKSKYFDALLSGRWQNDTDSAS----------KLKVSLRVTNVLIEDYVNVIKLLYCDDFTDVICSVAIAIAILPVALELLFEDCVKACVRFLEAVPWTEDEERMVIALVPMLKREECEKLLARVLPEQVNSSEEMLYELLVVAIHNLSNMAFAKAFVAKLLRDYSCKESARRVLDRVFLKTLKEVKYSLEEYSRPEFRVDNNETEAIQRLHLHTAMKSGRNLLWIIERMVELGVADLAVVEWTNQDSLTTDLQRAFRDEAWRNIVPALPGVVLRCTSKLANVVVSGSILVDRKVRMKLVEDWLPVLRVCKENVSPGISNYKSLYLELEETFLKITSTLPMADSQMLLKECLSFSTRNVDDCPHLVTAFNTWFRRANQPPPP 445
PS + F+DA+TADVIL L +D AD S A DQS++ ++LHS VL +SKYF ALLS RWQ +S+S + +++ T I ++ V++LLY DD I +V+ A+ +LP+ALELLFEDC+KACV+ LEAVPW+EDEE ++ L+P L EE ++LLARV P + +SSEEML+ L++ AIHN NMAFAKAFVAKLLRD+S +ES RRVLD+ F K+L+ VK SLEEYS P+FR D+NETEAIQRL+LHTAM +G++LLW++ERM+EL VAD AV+ W+ Q S T DLQRAFRD+AWRNIVP+LP VVLRCTS+LAN V +G+IL ++VRMKLV DWLPVL +CK++VSP N+KSLYLELEETFL+I STLP++D+Q LL++CLSFSTRNVDDCPHLV+AF+TWFRRAN+PP P
Sbjct: 59 PSSAGGFNDAATADVILSLVLDQQYPLADFSEASSDATVDQSEIQIHLHSHVLRRSKYFAALLSDRWQQQNESSSNNPEIPPKIHRYNLTVPATTASINHHLTVLQLLYSDDLFSSIDNVSAALNLLPIALELLFEDCIKACVKLLEAVPWSEDEEEKILNLIPFLSDEESKELLARVSPVRRDSSEEMLHGLILSAIHNHPNMAFAKAFVAKLLRDFSSRESIRRVLDKAFEKSLRVVKQSLEEYSSPDFRGDHNETEAIQRLNLHTAMTNGKHLLWLVERMIELRVADTAVMAWSEQASFTADLQRAFRDDAWRNIVPSLPAVVLRCTSRLANAVATGNILATKQVRMKLVRDWLPVLIICKDSVSPMGPNHKSLYLELEETFLRIISTLPLSDAQGLLQQCLSFSTRNVDDCPHLVSAFSTWFRRANRPPHP 493
BLAST of XM_017370842.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A067LP54 ((Uncharacterized protein {ECO:0000313|EMBL:KDP46249.1}))
HSP 1 Score: 540.806 bits (1392), Expect = 0.000e+0
Identity = 266/428 (62.15%), Postives = 336/428 (78.50%), Query Frame = 0
Match: A0A067LP54 ((Uncharacterized protein {ECO:0000313|EMBL:KDP46249.1}))
HSP 1 Score: 540.806 bits (1392), Expect = 0.000e+0
Identity = 266/428 (62.15%), Postives = 336/428 (78.50%), Query Frame = 0
Query: 32 FDDASTADVILRLYIDNS----EDDADISAGADQSDVVLYLHSSVLSKSKYFDALLSGRWQ--------NDTDSASK----LKVSLRVTNVLIEDYVNVIKLLYCDDFTDVICSVAIAIAILPVALELLFEDCVKACVRFLEAVPWTEDEERMVIALVPMLKREECEKLLARVLPEQVNSSEEMLYELLVVAIHNLSNMAFAKAFVAKLLRDYSCKESARRVLDRVFLKTLKEVKYSLEEYSRPEFRVDNNETEAIQRLHLHTAMKSGRNLLWIIERMVELGVADLAVVEWTNQDSLTTDLQRAFRDEAWRNIVPALPGVVLRCTSKLANVVVSGSILVDRKVRMKLVEDWLPVLRVCKENVSPGISNYKSLYLELEETFLKITSTLPMADSQMLLKECLSFSTRNVDDCPHLVTAFNTWFRRANQPP 443
F+D +TADVILRL++D + + D S+ +QSDV +YLHS VL ++KYF ALLS RWQ N +S K LK ++ T ++ ++ V++LLY DDFT VI S + A+ ILPVALELLFEDCVK CV+FLEAVPW+E+EE+ V++L+P L+ EE ++LLAR P + +S EEML+ L++ AIHN NMAF KAFVAKLLR++S +ESARRVL+R F ++LK VK SLEEYS P+FR D+NETEAIQRL+LHTA+ +G++LLW++ERM+EL VAD AV EW+ Q + T DLQRAFRD+AWRNIVP LP VVLRCT KLAN V +G+IL R+VRMKLV+DWLPVL VCK+NVSP ++KSLY+ELEETFL+I STLPM+D+Q LL++CLSFSTRNV+DCPHLV AFNTWFRRA QPP
Sbjct: 80 FNDPTTADVILRLFLDATAPFTDGDGCFSSVGEQSDVQIYLHSQVLRRAKYFSALLSDRWQPNSSAIESNYPNSNGKSLISLKFGVQPTQGSMDVHLTVLELLYTDDFTTVINSASTALDILPVALELLFEDCVKNCVKFLEAVPWSEEEEKRVLSLIPFLREEESQELLARTSPGKDDSCEEMLHGLILAAIHNHPNMAFVKAFVAKLLREFSSRESARRVLERAFEESLKIVKESLEEYSSPDFRGDHNETEAIQRLNLHTALTNGKHLLWLVERMIELKVADSAVKEWSEQSAFTADLQRAFRDDAWRNIVPGLPAVVLRCTLKLANAVAAGTILAARQVRMKLVKDWLPVLIVCKDNVSPMSPSHKSLYIELEETFLRIISTLPMSDAQELLQQCLSFSTRNVEDCPHLVCAFNTWFRRAMQPP 507
| Match Name | Stats | Description |
|---|---|---|
| A0A6P6VTB6 | E-Value: 0.000e+0, PID: 64.17 | (BTB/POZ domain-containing protein At3g05675-like ... [more] |
| A0A7J7HI34 | E-Value: 0.000e+0, PID: 65.01 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5951... [more] |
| A0A2J6L192 | E-Value: 0.000e+0, PID: 62.44 | BTB domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A834YDB8 | E-Value: 0.000e+0, PID: 64.29 | (Uncharacterized protein {ECO:0000313|EMBL:KAF8377... [more] |
| A0A1U8DXI9 | E-Value: 0.000e+0, PID: 58.82 | (BTB/POZ domain-containing protein At3g05675-like ... [more] |
| A0A2G2WA86 | E-Value: 0.000e+0, PID: 58.82 | (Uncharacterized protein {ECO:0000313|EMBL:PHT4207... [more] |
| A0A2G3BVV1 | E-Value: 0.000e+0, PID: 58.82 | (Uncharacterized protein {ECO:0000313|EMBL:PHU1060... [more] |
| A0A103Y3Q7 | E-Value: 0.000e+0, PID: 61.28 | (BTB/POZ fold {ECO:0000313|EMBL:KVI01973.1})[more] |
| A0A022RFW5 | E-Value: 0.000e+0, PID: 60.69 | (Uncharacterized protein {ECO:0000313|EMBL:EYU3779... [more] |
| A0A067LP54 | E-Value: 0.000e+0, PID: 62.15 | (Uncharacterized protein {ECO:0000313|EMBL:KDP4624... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |