Resource Type:
Polypeptide
Name:
XM_017368235.1
Identifier:
XM_017368235.1-protein
Sequence:
MERKQGFFSALREEVVRGLSPGRSRAKSPGRIGSSMSGLLFRRKNHGHDG
NFENPENYVARSGSLRTLAPLIEGPDPNGGEIGDSKRVGLGQWVKGQLSR
APSMAASNGFSSSTNSNKRSDLRLLLGVMGAPLAPVYVSTTDPLPHLSIK
DTPIETSSAQYILQQYTAASGGQKVQNSIRNAYAMGKVKMLASEFETATR
VTKNKNASRDAESGGFVLWQMNPDMWYVELAVGGSKVHAGCNGKLVWRHT
PWLGAHTAKGPVRPLRRALQGLDPRTTASLFADSRCIGEKKINGEECFIL
KLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHMEDSHLTRIQSSG
GDAVYWETTINSYMEDYRPVEGIMIAHSGRSVVTLFRFGEMAMSHTKTRM
EEAWTIEEVAFNVPGLSLDCFIPPADLRSGSISEARELPQDGREKSTTGV
AAHRAKVAALENTHDDDMNWKVKV
Sequence Length:
474
Sequence Checksum:
44abe35599ba371ca3b2afc8e9c45112
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017368235.1, derives from mRNA, XM_017368235.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017368235.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017368235.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BSH6 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8545798.1}))
HSP 1 Score: 827.395 bits (2136), Expect = 0.000e+0
Identity = 408/483 (84.47%), Postives = 436/483 (90.27%), Query Frame = 0
Match: A0A5J5BSH6 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8545798.1}))
HSP 1 Score: 827.395 bits (2136), Expect = 0.000e+0
Identity = 408/483 (84.47%), Postives = 436/483 (90.27%), Query Frame = 0
Query: 1 MERKQGFFSALREEVVRGLSPGRSRAKSPGRIGSSMSGLLFRRKNHGHDGNFENPENYVARSGSLR----TLAPLIEGPDPNGGEIGDSKRVG--LGQWVKGQLSRAPSMAASNGFSSSTNSNKRSDLRLLLGVMGAPLAPVYVSTTDPLPHLSIKDTPIETSSAQYILQQYTAASGGQKVQNSIRNAYAMGKVKMLASEFETATRVTKNKNASRDAESGGFVLWQMNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLGAHTAKGPVRPLRRALQGLDPRTTASLFADSRCIGEKKINGEECFILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHMEDSHLTRIQSSGGDAVYWETTINSYMEDYRPVEGIMIAHSGRSVVTLFRFGEMAMSHTKTRMEEAWTIEEVAFNVPGLSLDCFIPPADLRSGSISEARELPQDGREKSTTGVAAHRAKVAALENTHD---DDMNWKVKV 474
MERKQGFFSAL+EEVVRGLSPGRSRAKSP R GS +SGLL R+KNH NPE +ARSGSLR TL PL+EGPDP+GGE+GDSKR G LGQW+KGQLSR PS AASN + KRSDLRLLLGVMGAPLAPVYVST DPLPHLSIKDTPIETSSAQYILQQYTAASGGQK+QNSIRNAYAMGKVKMLASEFETAT+ KN+NA+R AESGGFVLWQMNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLGAHTAKGPVRPLRRALQGLDPRTTAS+FAD+RCIGEKKINGE+CFILKLCADPQTLKARSEG AEIIRHVLFGYFSQKTGLLVHMEDSHLTRIQ++GGDAVYWETTI+S+++DYRPVEGIMIAHSGRSVVTLFRFGEMAMSHTKTRMEEAWTIEEVAFN+PGLS+DCFIPPADLRSGSISEA ELPQD R KST +AAHRAKVAALE HD D+M WK++V
Sbjct: 1 MERKQGFFSALKEEVVRGLSPGRSRAKSPARNGSPISGLLRRKKNH----YVANPEPLIARSGSLRPLGETLTPLMEGPDPDGGEVGDSKRSGSGLGQWMKGQLSRTPS-AASNAY-------KRSDLRLLLGVMGAPLAPVYVSTNDPLPHLSIKDTPIETSSAQYILQQYTAASGGQKLQNSIRNAYAMGKVKMLASEFETATKAMKNRNAARAAESGGFVLWQMNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLGAHTAKGPVRPLRRALQGLDPRTTASMFADARCIGEKKINGEDCFILKLCADPQTLKARSEGAAEIIRHVLFGYFSQKTGLLVHMEDSHLTRIQTNGGDAVYWETTIDSFLDDYRPVEGIMIAHSGRSVVTLFRFGEMAMSHTKTRMEEAWTIEEVAFNIPGLSVDCFIPPADLRSGSISEACELPQDERGKSTITLAAHRAKVAALEKAHDSSIDNMVWKMEV 471
BLAST of XM_017368235.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AXB8 ((Uncharacterized protein {ECO:0000313|EMBL:MPA59823.1}))
HSP 1 Score: 826.624 bits (2134), Expect = 0.000e+0
Identity = 406/483 (84.06%), Postives = 434/483 (89.86%), Query Frame = 0
Match: A0A5B7AXB8 ((Uncharacterized protein {ECO:0000313|EMBL:MPA59823.1}))
HSP 1 Score: 826.624 bits (2134), Expect = 0.000e+0
Identity = 406/483 (84.06%), Postives = 434/483 (89.86%), Query Frame = 0
Query: 1 MERKQGFFSALREEVVRGLSPGRSRAKSPGRIGSSMSGLLFRRKNHGHDGNFENPENYVARSGSLR----TLAPLIEGPDPNGGEIGDSKRVG--LGQWVKGQLSRAPSMAASNGFSSSTNSNKRSDLRLLLGVMGAPLAPVYVSTTDPLPHLSIKDTPIETSSAQYILQQYTAASGGQKVQNSIRNAYAMGKVKMLASEFETATRVTKNKNASRDAESGGFVLWQMNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLGAHTAKGPVRPLRRALQGLDPRTTASLFADSRCIGEKKINGEECFILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHMEDSHLTRIQSSGGDAVYWETTINSYMEDYRPVEGIMIAHSGRSVVTLFRFGEMAMSHTKTRMEEAWTIEEVAFNVPGLSLDCFIPPADLRSGSISEARELPQDGREKSTTGVAAHRAKVAALENTHD---DDMNWKVKV 474
MERKQGFFSAL+EEVVRGLSPGRSRAKSP R GS M GLL R+KNH NPE ++ RSGSLR TL PL+EGPDP+GGE+GDSKR G LGQW+KGQLSR PS+A +N+ KRSDLRLLLGVMGAPLAPV+VST DPLPHLSIKDTPIETSSAQYILQQYTAASGGQK+QNSIRNAYAMGKVKMLASEFETATRV KN+N +R AESGGFVLWQMNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLGAHTAKGPVRPLRRALQGLDPRTTAS+FA++RCIGEKKINGE+CFILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHMEDSHL RIQS+GGDAVYWETTINS+++DYRPVEGIMIAHSGRSVVTLFRFGEMAMSHTKTRMEEAWTIEEVAFNVPGLS+DCFIPPADLRSGSISEA ELPQD R KS +AAHRAK+AALE HD D+M WKV+V
Sbjct: 1 MERKQGFFSALKEEVVRGLSPGRSRAKSPARSGSPMLGLLRRKKNH----YVANPEPFIGRSGSLRPVGETLTPLMEGPDPDGGEVGDSKRSGSGLGQWMKGQLSRTPSVA--------SNAYKRSDLRLLLGVMGAPLAPVHVSTNDPLPHLSIKDTPIETSSAQYILQQYTAASGGQKLQNSIRNAYAMGKVKMLASEFETATRVVKNRNVARAAESGGFVLWQMNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLGAHTAKGPVRPLRRALQGLDPRTTASMFANARCIGEKKINGEDCFILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHMEDSHLNRIQSNGGDAVYWETTINSFLDDYRPVEGIMIAHSGRSVVTLFRFGEMAMSHTKTRMEEAWTIEEVAFNVPGLSVDCFIPPADLRSGSISEACELPQDERGKSAIALAAHRAKIAALEKAHDSSIDNMVWKVEV 471
BLAST of XM_017368235.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AVC5 ((Uncharacterized protein {ECO:0000313|EMBL:MPA59826.1}))
HSP 1 Score: 822.387 bits (2123), Expect = 0.000e+0
Identity = 402/483 (83.23%), Postives = 433/483 (89.65%), Query Frame = 0
Match: A0A5B7AVC5 ((Uncharacterized protein {ECO:0000313|EMBL:MPA59826.1}))
HSP 1 Score: 822.387 bits (2123), Expect = 0.000e+0
Identity = 402/483 (83.23%), Postives = 433/483 (89.65%), Query Frame = 0
Query: 1 MERKQGFFSALREEVVRGLSPGRSRAKSPGRIGSSMSGLLFRRKNHGHDGNFENPENYVARSGSLR----TLAPLIEGPDPNGGEIGDSKRVG--LGQWVKGQLSRAPSMAASNGFSSSTNSNKRSDLRLLLGVMGAPLAPVYVSTTDPLPHLSIKDTPIETSSAQYILQQYTAASGGQKVQNSIRNAYAMGKVKMLASEFETATRVTKNKNASRDAESGGFVLWQMNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLGAHTAKGPVRPLRRALQGLDPRTTASLFADSRCIGEKKINGEECFILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHMEDSHLTRIQSSGGDAVYWETTINSYMEDYRPVEGIMIAHSGRSVVTLFRFGEMAMSHTKTRMEEAWTIEEVAFNVPGLSLDCFIPPADLRSGSISEARELPQDGREKSTTGVAAHRAKVAALENTHD---DDMNWKVKV 474
MERKQGFFSAL+EEVVRGLSP RSR+KSP R GS +SGL R+KNH + NPE + RSGSLR TL PL+EGPDP+GGE+GDSKR G LGQW+KGQLSR PS+A +N+ +RSDLRLLLGVMGAPLAPV+VST DPLPHLSIKDTPIETSSAQYILQQYTAASGGQK+QNSIRNAYAMGKVKMLASEFETATRV KN+N +R AESGGFVLWQMNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLGAHTAKGPVRPLRRALQGLDPRTTAS+FA++RCIGEKKINGE+CFILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHMEDSHL RIQS+GGDAVYWETTINS+++DYRPVEGIMIAHSGRSVVTLFRFGEMAMSHTKTRMEEAWTIEEVAFNVPGLS+DCFIPPADLRSGSISEA ELPQD R KS +AAHRAK+AALE HD D+M WKV+V
Sbjct: 1 MERKQGFFSALKEEVVRGLSPARSRSKSPARSGSPISGLFSRKKNH----HVANPEPLIVRSGSLRPVGETLTPLMEGPDPDGGEVGDSKRSGSGLGQWMKGQLSRTPSVA--------SNAYRRSDLRLLLGVMGAPLAPVHVSTNDPLPHLSIKDTPIETSSAQYILQQYTAASGGQKLQNSIRNAYAMGKVKMLASEFETATRVVKNRNVARAAESGGFVLWQMNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLGAHTAKGPVRPLRRALQGLDPRTTASMFANARCIGEKKINGEDCFILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHMEDSHLNRIQSNGGDAVYWETTINSFLDDYRPVEGIMIAHSGRSVVTLFRFGEMAMSHTKTRMEEAWTIEEVAFNVPGLSVDCFIPPADLRSGSISEACELPQDERGKSAIALAAHRAKIAALEKAHDSSIDNMVWKVEV 471
BLAST of XM_017368235.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7HGV0 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5951815.1}))
HSP 1 Score: 818.92 bits (2114), Expect = 0.000e+0
Identity = 395/473 (83.51%), Postives = 426/473 (90.06%), Query Frame = 0
Match: A0A7J7HGV0 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5951815.1}))
HSP 1 Score: 818.92 bits (2114), Expect = 0.000e+0
Identity = 395/473 (83.51%), Postives = 426/473 (90.06%), Query Frame = 0
Query: 1 MERKQGFFSALREEVVRGLSPGRSRAKSPGRIGSSMSGLLFRRKNHGHDGNFENPENYVARSGSLR----TLAPLIEGPDPNGGEIGDSKRVGLGQWVKGQLSRAPSMAASNGFSSSTNSNKRSDLRLLLGVMGAPLAPVYVSTTDPLPHLSIKDTPIETSSAQYILQQYTAASGGQKVQNSIRNAYAMGKVKMLASEFETATRVTKNKNASRDAESGGFVLWQMNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLGAHTAKGPVRPLRRALQGLDPRTTASLFADSRCIGEKKINGEECFILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHMEDSHLTRIQSSGGDAVYWETTINSYMEDYRPVEGIMIAHSGRSVVTLFRFGEMAMSHTKTRMEEAWTIEEVAFNVPGLSLDCFIPPADLRSGSISEARELPQDGREKSTTGVAAHRAKVAALENTHDDDMN 469
ME+KQGFFSAL+EEVVRGLSP RSRAKSP R GS MSGLL RRK H NPE RSGS+R TL PL+EGPDP+GGE+GDSKR GLGQW+KG LSR PS+A+SN + KRSDLRLLLGVMGAPLAPV+VST DPLPHLSIKDTPIE+SSAQYILQQYTAASGGQ++QNSIRNAYAMGKVKM+ASEFETATRVTKN+ A++DAESGGFVLWQMNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLGAHTAKGPVRPLRRALQGLDPRTTAS+FAD+RCIGEK+INGE+CFILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHMEDSHLTRIQS+GGD VYWETTINS+++DYRPVEGIMIAHSGRSVVTLFRFGEMAMSHTKTRMEEAWTIEEVAFNVPGLS+DCFIPPADLRSGS+SE ELPQD R KS +AAHRAKVAALE HD ++
Sbjct: 1 MEKKQGFFSALKEEVVRGLSPARSRAKSPARSGSPMSGLLRRRKQQNH---VVNPEPLSVRSGSMRIVGETLTPLMEGPDPDGGEVGDSKRGGLGQWMKGHLSRTPSVASSNAY-------KRSDLRLLLGVMGAPLAPVHVSTNDPLPHLSIKDTPIESSSAQYILQQYTAASGGQRLQNSIRNAYAMGKVKMIASEFETATRVTKNRIAAKDAESGGFVLWQMNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLGAHTAKGPVRPLRRALQGLDPRTTASMFADARCIGEKRINGEDCFILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHMEDSHLTRIQSNGGDVVYWETTINSFLDDYRPVEGIMIAHSGRSVVTLFRFGEMAMSHTKTRMEEAWTIEEVAFNVPGLSIDCFIPPADLRSGSLSETCELPQDERGKSVIALAAHRAKVAALEKAHDSTID 463
BLAST of XM_017368235.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438EQ55 ((Uncharacterized protein {ECO:0000313|EMBL:RVW49863.1}))
HSP 1 Score: 817.379 bits (2110), Expect = 0.000e+0
Identity = 397/484 (82.02%), Postives = 437/484 (90.29%), Query Frame = 0
Match: A0A438EQ55 ((Uncharacterized protein {ECO:0000313|EMBL:RVW49863.1}))
HSP 1 Score: 817.379 bits (2110), Expect = 0.000e+0
Identity = 397/484 (82.02%), Postives = 437/484 (90.29%), Query Frame = 0
Query: 1 MERKQGFFSALREEVVRGLSPGRSRAKSPGRIGSSMSGLLFRRKNHGHDGNFENPENYVARSGSLR-----TLAPLIEGPDPNGGEIGDSKR--VGLGQWVKGQLSRAPSMAASNGFSSSTNSNKRSDLRLLLGVMGAPLAPVYVSTTDPLPHLSIKDTPIETSSAQYILQQYTAASGGQKVQNSIRNAYAMGKVKMLASEFETATRVTKNKNASRDAESGGFVLWQMNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLGAHTAKGPVRPLRRALQGLDPRTTASLFADSRCIGEKKINGEECFILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHMEDSHLTRIQSSGGDAVYWETTINSYMEDYRPVEGIMIAHSGRSVVTLFRFGEMAMSHTKTRMEEAWTIEEVAFNVPGLSLDCFIPPADLRSGSISEARELPQDGREKSTTGVAAHRAKVAALENTHD---DDMNWKVKV 474
M+RKQGFF+AL+EEVVRGLSP RSRAKSPGR GS MSGLL RR+ H+ NPE ++RSGSLR TL PL+EGPDP+G EIG+SKR +GLG W+KGQLSR PS+ ++ + +RSDLRLLLGVMGAPLAPV+VSTTDPLPHLSIKDTPIETSSAQYILQQYTAASGGQK+QNSIRNAYAMGKVKM+ASEFETATRV KN+NAS+DA+SGGFVLWQMNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLGAH+AKGPVRPLRRALQGLDPRTTAS+FAD+RCIGEKKINGE+CFILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHMEDSHLTRIQS+GGDAVYWETTINS++EDYRPVEGIMIAHSGRS+VTLFRFGEMAMSHTKTRMEE WTIEEVAFNVPGLS+DCFIPPADLRSGSISEA ELP + R KS+ +AAHRAKVAALE THD D++ W+++V
Sbjct: 1 MDRKQGFFAALKEEVVRGLSPARSRAKSPGRAGSPMSGLL-RRRKQSHNQYVANPEPLISRSGSLRPVVGETLTPLMEGPDPDGSEIGESKRSGLGLGHWMKGQLSRTPSVTSA--------AYRRSDLRLLLGVMGAPLAPVHVSTTDPLPHLSIKDTPIETSSAQYILQQYTAASGGQKLQNSIRNAYAMGKVKMIASEFETATRVLKNRNASKDADSGGFVLWQMNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLGAHSAKGPVRPLRRALQGLDPRTTASMFADARCIGEKKINGEDCFILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHMEDSHLTRIQSNGGDAVYWETTINSFLEDYRPVEGIMIAHSGRSIVTLFRFGEMAMSHTKTRMEETWTIEEVAFNVPGLSVDCFIPPADLRSGSISEACELPHEERGKSSVSLAAHRAKVAALEKTHDGGIDNVIWRMEV 475
BLAST of XM_017368235.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A5C1V9 ((Uncharacterized protein {ECO:0000313|EMBL:CAN68554.1}))
HSP 1 Score: 817.379 bits (2110), Expect = 0.000e+0
Identity = 397/484 (82.02%), Postives = 437/484 (90.29%), Query Frame = 0
Match: A5C1V9 ((Uncharacterized protein {ECO:0000313|EMBL:CAN68554.1}))
HSP 1 Score: 817.379 bits (2110), Expect = 0.000e+0
Identity = 397/484 (82.02%), Postives = 437/484 (90.29%), Query Frame = 0
Query: 1 MERKQGFFSALREEVVRGLSPGRSRAKSPGRIGSSMSGLLFRRKNHGHDGNFENPENYVARSGSLR-----TLAPLIEGPDPNGGEIGDSKR--VGLGQWVKGQLSRAPSMAASNGFSSSTNSNKRSDLRLLLGVMGAPLAPVYVSTTDPLPHLSIKDTPIETSSAQYILQQYTAASGGQKVQNSIRNAYAMGKVKMLASEFETATRVTKNKNASRDAESGGFVLWQMNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLGAHTAKGPVRPLRRALQGLDPRTTASLFADSRCIGEKKINGEECFILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHMEDSHLTRIQSSGGDAVYWETTINSYMEDYRPVEGIMIAHSGRSVVTLFRFGEMAMSHTKTRMEEAWTIEEVAFNVPGLSLDCFIPPADLRSGSISEARELPQDGREKSTTGVAAHRAKVAALENTHD---DDMNWKVKV 474
M+RKQGFF+AL+EEVVRGLSP RSRAKSPGR GS MSGLL RR+ H+ NPE ++RSGSLR TL PL+EGPDP+G EIG+SKR +GLG W+KGQLSR PS+ ++ + +RSDLRLLLGVMGAPLAPV+VSTTDPLPHLSIKDTPIETSSAQYILQQYTAASGGQK+QNSIRNAYAMGKVKM+ASEFETATRV KN+NAS+DA+SGGFVLWQMNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLGAH+AKGPVRPLRRALQGLDPRTTAS+FAD+RCIGEKKINGE+CFILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHMEDSHLTRIQS+GGDAVYWETTINS++EDYRPVEGIMIAHSGRS+VTLFRFGEMAMSHTKTRMEE WTIEEVAFNVPGLS+DCFIPPADLRSGSISEA ELP + R KS+ +AAHRAKVAALE THD D++ W+++V
Sbjct: 1 MDRKQGFFAALKEEVVRGLSPARSRAKSPGRAGSPMSGLL-RRRKQSHNQYVANPEPLISRSGSLRPVVGETLTPLMEGPDPDGSEIGESKRSGLGLGHWMKGQLSRTPSVTSA--------AYRRSDLRLLLGVMGAPLAPVHVSTTDPLPHLSIKDTPIETSSAQYILQQYTAASGGQKLQNSIRNAYAMGKVKMIASEFETATRVLKNRNASKDADSGGFVLWQMNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLGAHSAKGPVRPLRRALQGLDPRTTASMFADARCIGEKKINGEDCFILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHMEDSHLTRIQSNGGDAVYWETTINSFLEDYRPVEGIMIAHSGRSIVTLFRFGEMAMSHTKTRMEETWTIEEVAFNVPGLSVDCFIPPADLRSGSISEACELPHEERGKSSVSLAAHRAKVAALEKTHDGGIDNVIWRMEV 475
BLAST of XM_017368235.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AUV1 ((Uncharacterized protein {ECO:0000313|EMBL:MPA59825.1}))
HSP 1 Score: 815.453 bits (2105), Expect = 0.000e+0
Identity = 402/480 (83.75%), Postives = 431/480 (89.79%), Query Frame = 0
Match: A0A5B7AUV1 ((Uncharacterized protein {ECO:0000313|EMBL:MPA59825.1}))
HSP 1 Score: 815.453 bits (2105), Expect = 0.000e+0
Identity = 402/480 (83.75%), Postives = 431/480 (89.79%), Query Frame = 0
Query: 1 MERKQGFFSALREEVVRGLSPGRSRAKSPGRIGSSMSGLLFRRKNHGHDGNFENPENYVARSGSLR----TLAPLIEGPDPNGGEIGDSKRVG--LGQWVKGQLSRAPSMAASNGFSSSTNSNKRSDLRLLLGVMGAPLAPVYVSTTDPLPHLSIKDTPIETSSAQYILQQYTAASGGQKVQNSIRNAYAMGKVKMLASEFETATRVTKNKNASRDAESGGFVLWQMNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLGAHTAKGPVRPLRRALQGLDPRTTASLFADSRCIGEKKINGEECFILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHMEDSHLTRIQSSGGDAVYWETTINSYMEDYRPVEGIMIAHSGRSVVTLFRFGEMAMSHTKTRMEEAWTIEEVAFNVPGLSLDCFIPPADLRSGSISEARELPQDGREKSTTGVAAHRAKVAALENTHDDDMNWKVKV 474
MERKQGFFSAL+EEVVRGLSPGRSRAKSP R GS M GLL R+KNH NPE ++ RSGSLR TL PL+EGPDP+GGE+GDSKR G LGQW+KGQLSR PS+A +N+ KRSDLRLLLGVMGAPLAPV+VST DPLPHLSIKDTPIETSSAQYILQQYTAASGGQK+QNSIRNAYAMGKVKMLASEFETATRV KN+NA+R AESGGFVLWQMNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLGAHTAKGPVRPLRRALQGLDPRTT ++FAD+RCIGEKKINGE+CFILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHMEDSHLTRIQS+GGD VYWETTI+S+++DYRPVEGIMIAHSGRSVVTLFRFGEMAMSHTKTRMEEAWTIEEVAFNVPGLSLDCFIPPADLRSGSISEA ELPQD R K +AAHRAKVAA ++ D+M WKV+V
Sbjct: 1 MERKQGFFSALKEEVVRGLSPGRSRAKSPARSGSPMLGLLRRKKNH----YVANPEPFIGRSGSLRPVGETLTPLMEGPDPDGGEVGDSKRSGSGLGQWMKGQLSRTPSVA--------SNAYKRSDLRLLLGVMGAPLAPVHVSTNDPLPHLSIKDTPIETSSAQYILQQYTAASGGQKLQNSIRNAYAMGKVKMLASEFETATRVMKNRNAARAAESGGFVLWQMNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLGAHTAKGPVRPLRRALQGLDPRTTVNMFADARCIGEKKINGEDCFILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHMEDSHLTRIQSNGGDTVYWETTIDSFLDDYRPVEGIMIAHSGRSVVTLFRFGEMAMSHTKTRMEEAWTIEEVAFNVPGLSLDCFIPPADLRSGSISEACELPQDERGKGAITLAAHRAKVAA-HDSSIDNMVWKVEV 467
BLAST of XM_017368235.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RC30 ((Glutamyl-tRNA(Gln) amidotransferase subunit A like {ECO:0000313|EMBL:PSS26132.1}))
HSP 1 Score: 811.601 bits (2095), Expect = 0.000e+0
Identity = 396/477 (83.02%), Postives = 428/477 (89.73%), Query Frame = 0
Match: A0A2R6RC30 ((Glutamyl-tRNA(Gln) amidotransferase subunit A like {ECO:0000313|EMBL:PSS26132.1}))
HSP 1 Score: 811.601 bits (2095), Expect = 0.000e+0
Identity = 396/477 (83.02%), Postives = 428/477 (89.73%), Query Frame = 0
Query: 1 MERKQGFFSALREEVVRGLSPGRSRAKSPGRIGSSMSGLLFRRKNHGHDGNFENPENYVARSGSLRTLAPLIEGPDPNGGEIGDSKRVGLGQWVKGQLSRAPSMAASNGFSSSTNSNKRSDLRLLLGVMGAPLAPVYVSTTDPLPHLSIKDTPIETSSAQYILQQYTAASGGQKVQNSIRNAYAMGKVKMLASEFETATRVTKNKNASRDAESGGFVLWQMNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLGAHTAKGPVRPLRRALQGLDPRTTASLFADSRCIGEKKINGEECFILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHMEDSHLTRIQSSGGDAVYWETTINSYMEDYRPVEGIMIAHSGRSVVTLFRFGEMAMSHTKTRMEEAWTIEEVAFNVPGLSLDCFIPPADLRSGSISEARELPQDGREKSTTGVAAHRAKVAALENTHD---DDMNWKVKV 474
MERKQGFFSAL+EEV+RGLSP RSRAKSPGR GS MSGLL RR++H H NPE + RSGSL PL+EGPDP+GGE+GDSKRVGLGQWVKGQLSR PS+A+S + +RSDLRLLLGVMGAPLAPV+VST DPLPHLSIKDTPIETSSAQYILQQYTAASGGQ++QNSIRNAYAMGKVKMLA EFETA RV KN++ +RD ESGGFVLWQMNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLGAHTAKGPVRPLRRALQGLDPRTTAS+FAD+RCIGEKKIN E+CFILKLCADPQTLK+RSEGPAEIIRHVLFGYFSQKTGLLVHMEDSHLTRIQS+GGDAVYWETTINS+++DYRPVEGIMIAHSGRSVVTLFRFGEMAMSHTKTRMEE WTIEEVAFNVPGLS+DCFIPPADLRSGSISE ELPQ+ R KS +A+HRAKVAALE HD D M WK++V
Sbjct: 1 MERKQGFFSALKEEVIRGLSPARSRAKSPGRSGSPMSGLL-RRRSHRH---VANPETVIGRSGSL---TPLMEGPDPDGGEVGDSKRVGLGQWVKGQLSRTPSVASS--------AYRRSDLRLLLGVMGAPLAPVHVSTNDPLPHLSIKDTPIETSSAQYILQQYTAASGGQRLQNSIRNAYAMGKVKMLACEFETAGRVMKNRHPARDTESGGFVLWQMNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLGAHTAKGPVRPLRRALQGLDPRTTASMFADARCIGEKKINAEDCFILKLCADPQTLKSRSEGPAEIIRHVLFGYFSQKTGLLVHMEDSHLTRIQSNGGDAVYWETTINSFLDDYRPVEGIMIAHSGRSVVTLFRFGEMAMSHTKTRMEETWTIEEVAFNVPGLSVDCFIPPADLRSGSISEVCELPQEERGKSAIALASHRAKVAALEKDHDSNIDGMVWKMEV 462
BLAST of XM_017368235.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7ATN4 ((Uncharacterized protein {ECO:0000313|EMBL:MPA59824.1}))
HSP 1 Score: 809.29 bits (2089), Expect = 0.000e+0
Identity = 397/480 (82.71%), Postives = 429/480 (89.38%), Query Frame = 0
Match: A0A5B7ATN4 ((Uncharacterized protein {ECO:0000313|EMBL:MPA59824.1}))
HSP 1 Score: 809.29 bits (2089), Expect = 0.000e+0
Identity = 397/480 (82.71%), Postives = 429/480 (89.38%), Query Frame = 0
Query: 1 MERKQGFFSALREEVVRGLSPGRSRAKSPGRIGSSMSGLLFRRKNHGHDGNFENPENYVARSGSLR----TLAPLIEGPDPNGGEIGDSKRVG--LGQWVKGQLSRAPSMAASNGFSSSTNSNKRSDLRLLLGVMGAPLAPVYVSTTDPLPHLSIKDTPIETSSAQYILQQYTAASGGQKVQNSIRNAYAMGKVKMLASEFETATRVTKNKNASRDAESGGFVLWQMNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLGAHTAKGPVRPLRRALQGLDPRTTASLFADSRCIGEKKINGEECFILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHMEDSHLTRIQSSGGDAVYWETTINSYMEDYRPVEGIMIAHSGRSVVTLFRFGEMAMSHTKTRMEEAWTIEEVAFNVPGLSLDCFIPPADLRSGSISEARELPQDGREKSTTGVAAHRAKVAALENTHDDDMNWKVKV 474
MERKQGFFSAL+EEVVRGLSP RSR+KSP R GS +SGL R+KNH + NPE + RSGSLR TL PL+EGPDP+GGE+GDSKR G LGQW+KGQLSR PS+A +N+ +RSDLRLLLGVMGAPLAPV+VST DPLPHLSIKDTPIETSSAQYILQQYTAASGGQK+QNSIRNAYAMGKVKMLASEFETATRV KN+N +R AESGGFVLWQMNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLGAHTAKGPVRPLRRALQGLDPRTT ++FAD+RCIGEKKINGE+CFILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHMEDSHLTRIQS+GGD VYWETTI+S+++DYRPVEGIMIAHSGRSVVTLFRFGEMAMSHTKTRMEEAWTIEEVAFNVPGLSLDCFIPPADLRSGSISEA ELPQD R K +AAHRAKVAA ++ D+M WKV+V
Sbjct: 1 MERKQGFFSALKEEVVRGLSPARSRSKSPARSGSPISGLFSRKKNH----HVANPEPLIVRSGSLRPVGETLTPLMEGPDPDGGEVGDSKRSGSGLGQWMKGQLSRTPSVA--------SNAYRRSDLRLLLGVMGAPLAPVHVSTNDPLPHLSIKDTPIETSSAQYILQQYTAASGGQKLQNSIRNAYAMGKVKMLASEFETATRVVKNRNVARAAESGGFVLWQMNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLGAHTAKGPVRPLRRALQGLDPRTTVNMFADARCIGEKKINGEDCFILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHMEDSHLTRIQSNGGDTVYWETTIDSFLDDYRPVEGIMIAHSGRSVVTLFRFGEMAMSHTKTRMEEAWTIEEVAFNVPGLSLDCFIPPADLRSGSISEACELPQDERGKGAITLAAHRAKVAA-HDSSIDNMVWKVEV 467
BLAST of XM_017368235.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7V049 ((uncharacterized protein LOC104211066 {ECO:0000313|RefSeq:XP_009758366.1}))
HSP 1 Score: 808.135 bits (2086), Expect = 0.000e+0
Identity = 397/487 (81.52%), Postives = 434/487 (89.12%), Query Frame = 0
Match: A0A1U7V049 ((uncharacterized protein LOC104211066 {ECO:0000313|RefSeq:XP_009758366.1}))
HSP 1 Score: 808.135 bits (2086), Expect = 0.000e+0
Identity = 397/487 (81.52%), Postives = 434/487 (89.12%), Query Frame = 0
Query: 1 MERKQGFFSALREEVVRGLSPGRSRAKSPGRIGSSMSGLLFRRKNHGHDGN----FENPENYVARSGSLR----TLAPLIEGPDPNGGEIGDSKRVG--LGQWVKGQLSRAPSMAASNGFSSSTNSNKRSDLRLLLGVMGAPLAPVYVSTTDPLPHLSIKDTPIETSSAQYILQQYTAASGGQKVQNSIRNAYAMGKVKMLASEFETATRVTKNKNASRDAESGGFVLWQMNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLGAHTAKGPVRPLRRALQGLDPRTTASLFADSRCIGEKKINGEECFILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHMEDSHLTRIQSSGGDAVYWETTINSYMEDYRPVEGIMIAHSGRSVVTLFRFGEMAMSHTKTRMEEAWTIEEVAFNVPGLSLDCFIPPADLRSGSISEARELPQDGREKSTTGVAAHRAKVAALENTHD---DDMNWKVKV 474
MERKQGFFSAL+EEVVRGLSPGRSRAKSP R GS ++ LL R+KN + + N E ++RSGSLR TL PL+EGPDP+GGE+GDSKRVG LG W+KGQLSR PS+A S+ KRSDLRLLLGVMGAPLAPV+VST+DPLPHLSIKDTPIETSSAQYILQQYTAASGGQK+QNSI+NAYAMGK+KMLASEFET T+V KN+N++R AESGGFVLWQMNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLGAHTAKGPVRPLRRALQGLDPR+TAS+FA++RCIGEKKINGE+CFILKLCADP TLKARSEGPAEIIRHVLFGYFSQKTGLLVHMEDSHLTRIQS+GGDAVYWETTINS+++DYRPVEGIMIAHSGRSVVTLFRFGEMAMSHTKTRMEEAWTIEEVAFNVPGLS+DCFIPPADLRSGSISEA ELPQD R KS +A HRAKVAALE THD D+M WKV++
Sbjct: 1 MERKQGFFSALKEEVVRGLSPGRSRAKSPARSGSPITSLLRRKKNTNNSSSSSHYVANSEALISRSGSLRPLGETLTPLMEGPDPDGGEVGDSKRVGSGLGHWMKGQLSRTPSVA-------SSAYAKRSDLRLLLGVMGAPLAPVHVSTSDPLPHLSIKDTPIETSSAQYILQQYTAASGGQKLQNSIKNAYAMGKLKMLASEFETPTKVVKNRNSARAAESGGFVLWQMNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLGAHTAKGPVRPLRRALQGLDPRSTASMFANARCIGEKKINGEDCFILKLCADPHTLKARSEGPAEIIRHVLFGYFSQKTGLLVHMEDSHLTRIQSNGGDAVYWETTINSFLDDYRPVEGIMIAHSGRSVVTLFRFGEMAMSHTKTRMEEAWTIEEVAFNVPGLSMDCFIPPADLRSGSISEACELPQDERGKSAISLAHHRAKVAALEKTHDGSMDNMVWKVEI 480
| Match Name | Stats | Description |
|---|---|---|
| A0A5J5BSH6 | E-Value: 0.000e+0, PID: 84.47 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8545... [more] |
| A0A5B7AXB8 | E-Value: 0.000e+0, PID: 84.06 | (Uncharacterized protein {ECO:0000313|EMBL:MPA5982... [more] |
| A0A5B7AVC5 | E-Value: 0.000e+0, PID: 83.23 | (Uncharacterized protein {ECO:0000313|EMBL:MPA5982... [more] |
| A0A7J7HGV0 | E-Value: 0.000e+0, PID: 83.51 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5951... [more] |
| A0A438EQ55 | E-Value: 0.000e+0, PID: 82.02 | (Uncharacterized protein {ECO:0000313|EMBL:RVW4986... [more] |
| A5C1V9 | E-Value: 0.000e+0, PID: 82.02 | (Uncharacterized protein {ECO:0000313|EMBL:CAN6855... [more] |
| A0A5B7AUV1 | E-Value: 0.000e+0, PID: 83.75 | (Uncharacterized protein {ECO:0000313|EMBL:MPA5982... [more] |
| A0A2R6RC30 | E-Value: 0.000e+0, PID: 83.02 | (Glutamyl-tRNA(Gln) amidotransferase subunit A lik... [more] |
| A0A5B7ATN4 | E-Value: 0.000e+0, PID: 82.71 | (Uncharacterized protein {ECO:0000313|EMBL:MPA5982... [more] |
| A0A1U7V049 | E-Value: 0.000e+0, PID: 81.52 | (uncharacterized protein LOC104211066 {ECO:0000313... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |