Resource Type:
Polypeptide
Name:
XM_017368864.1
Identifier:
XM_017368864.1-protein
Sequence:
MVGKPAGESPESGTGDGWLNLINGLEREEMVEILSRGVCDQCQSNIQARV
LDLLNKKYQNISISEIASESSPEFKSADSSNLDSQQKSLESSIKTPSWGS
LQTPESVYVGLRKASPLTSSPATVNNKQSSTSIGPDSSLSSALPQTPQSA
DKEISDEQIERIGFAQVGRNKKFVHIEKINGKATNVLQGLELHTKVFSAD
EQKKIVECVYDFQRRGQNGQLRERTYSEPTKWMRGKGRITIQFGCCYNYA
VDKNGNPPGIIRDEEVDPLPPLFKQMIKRMVRWHVLPPSCVPNSCIVNIY
EAGDCIPPHIDHHDFLRPFCTVSFLTESNILFGSNLKISGPGEFEGPVSI
PLPMGSVLILNGNGADIAKHCVPAVSAKRISITFRKMDDSKLPFKFTPDP
ELQGLRPLGSKPLNYSPVQNKLKTETITPSVPITAGSTPFSIGKDDFPPL
GGSKSVKRRPGSRRSS
Sequence Length:
466
Sequence Checksum:
cc3b7b88dff492b33b2cef9853733cbc
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017368864.1, derives from mRNA, XM_017368864.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017368864.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017368864.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BYQ0 ((Putative Oxidoreductase {ECO:0000313|EMBL:MPA72193.1}) (1.14.11.53 {ECO:0000313|EMBL:MPA72193.1}))
HSP 1 Score: 591.652 bits (1524), Expect = 0.000e+0
Identity = 298/469 (63.54%), Postives = 358/469 (76.33%), Query Frame = 0
Match: A0A5B7BYQ0 ((Putative Oxidoreductase {ECO:0000313|EMBL:MPA72193.1}) (1.14.11.53 {ECO:0000313|EMBL:MPA72193.1}))
HSP 1 Score: 591.652 bits (1524), Expect = 0.000e+0
Identity = 298/469 (63.54%), Postives = 358/469 (76.33%), Query Frame = 0
Query: 1 MVGKPAGESPESGTGDGWLNLINGLEREEMVEILSRGVCDQCQSNIQARVLDLLNKKYQNISISEIASESSPEFKSADSSNLDSQQKSLESSIKTPSWGSLQTPESVYVGLRKASPLTSSPATVNNKQSSTS-IGPDSSLSSALPQTPQSADKEISDEQIERIGFAQVGRNKKFVHIEKINGKATNVLQGLELHTKVFSADEQKKIVECVYDFQRRGQNGQLRERTYSEPTKWMRGKGRITIQFGCCYNYAVDKNGNPPGIIRDEEVDPLPPLFKQMIKRMVRWHVLPPSCVPNSCIVNIYEAGDCIPPHIDHHDFLRPFCTVSFLTESNILFGSNLKISGPGEFEGPVSIPLPMGSVLILNGNGADIAKHCVPAVSAKRISITFRKMDDSKLPFKFTPDPELQGLRPLGSKPLNYSPV-QNKLKTETITPSVPITAGST---PFSIGKDDFPPLGGSKSVKRRPGSRR 464
M G+ +G+ PES G ++L+ L R+E++E+LS G C CQ +Q R+ +++N+K +S SE+S EF SADSS +KS ESS +T SW S QTPE VY G + SSPA+VN+KQSS++ +G + L+ L + D +S+EQ E I FAQVGR K +VH E+I+GKATNVLQGLELHT+VF+A EQKKIVECVY+ QR GQ GQLR RTYSEP KWMRGKGR+TIQFGCCYNYAVDKNGNPPGI+RDEEVDPLPPLF +MIKRMVRWHVLPP+CVPNSCIVN+Y+ GDCIPPHIDHHDFLRPFCTVSFLTE ILFG+NLKI GPGEF GPVSIPLP GSVLILNGNGADIAKHCVPAV AKRISITFRKMD+SK+P+++ PDPEL G++PL PL SPV QN+ + IT + T F +GKDDFPPLG + S+ R+ G+R+
Sbjct: 1 MTGEYSGKMPESNAGGACMSLLRTLGRDEILEVLSDGFCQHCQDLLQTRINNVVNRKLSAKYVSNGNSETSAEFWSADSS----SEKSSESSTRTLSWVSTQTPERVYSGKQNGYVANSSPASVNSKQSSSNHLGSEILLNDGLSGVTCAGDNGLSEEQKEHIRFAQVGRKKDYVHTERIDGKATNVLQGLELHTRVFNAVEQKKIVECVYNLQRMGQKGQLRARTYSEPRKWMRGKGRVTIQFGCCYNYAVDKNGNPPGIMRDEEVDPLPPLFMKMIKRMVRWHVLPPTCVPNSCIVNMYDEGDCIPPHIDHHDFLRPFCTVSFLTECKILFGANLKILGPGEFAGPVSIPLPTGSVLILNGNGADIAKHCVPAVPAKRISITFRKMDESKIPYEYVPDPELLGMKPLVYSPLTKSPVQQNQQEKNKITRNESRIVAETSNDSFIVGKDDFPPLGSANSLNRQRGNRK 465
BLAST of XM_017368864.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BRL7 (Fe2OG dioxygenase domain-containing protein {ECO:0000259|PROSITE:PS51471})
HSP 1 Score: 577.785 bits (1488), Expect = 0.000e+0
Identity = 288/470 (61.28%), Postives = 357/470 (75.96%), Query Frame = 0
Match: A0A5J5BRL7 (Fe2OG dioxygenase domain-containing protein {ECO:0000259|PROSITE:PS51471})
HSP 1 Score: 577.785 bits (1488), Expect = 0.000e+0
Identity = 288/470 (61.28%), Postives = 357/470 (75.96%), Query Frame = 0
Query: 1 MVGKPAGESPESGTGDGWLNLINGLEREEMVEILSRGVCDQCQSNIQARVLDLLNKKYQNISISEIASESSPEFKSADSSNLDSQQKSLESSIKTPSWGSLQTPESVYVGLRKASPLTSSPATVNNKQSS-TSIGPDSSLSSALPQTPQSADKEISDEQIERIGFAQVGRNKKFVHIEKINGKATNVLQGLELHTKVFSADEQKKIVECVYDFQRRGQNGQLRERTYSEPTKWMRGKGRITIQFGCCYNYAVDKNGNPPGIIRDEEVDPLPPLFKQMIKRMVRWHVLPPSCVPNSCIVNIYEAGDCIPPHIDHHDFLRPFCTVSFLTESNILFGSNLKISGPGEFEGPVSIPLPMGSVLILNGNGADIAKHCVPAVSAKRISITFRKMDDSKLPFKFTPDPELQGLRPLGSKPLNYSPVQNKL--KTETITPSVPITAGST--PFSIGKDDFPPLGGSKSVKRRPGSRRS 465
M G+ +G PES GD ++L+ L REE++E+LS G C CQ+ +Q R+ ++N+K+ +S+S SE+S EF SADSS+L S +K+ ESS KT S++TPE Y G+RK SSPA+V+++QSS G + L+ L D +S+EQ E+I FAQVGR K +VH E+I+GKATNVLQGLELHT+VF+A+EQK IVECVY+ Q GQ QLR RTYSEP KWMRGKGR+T+QFGCCYNYAVDKNGNPPGI+RDEEVDPLPPLFKQMIKRMVRWHVLP +CVPNSCIVNIY+ GDCIPPHIDHHDFLRPFCTVSFLTE ILFG+NLKI PGEF GP+SIPLP+GSVLILNGNGAD+AKHCVP V AKRISITFR+MD+SK+P+++ P+ EL GL+PL P+ SPVQ K KT+ + A ++ F +G+DDFP LG + S+ R+ S++S
Sbjct: 1 MTGEFSGSVPESSAGDACMSLLRTLGREEILEVLSDGFCQHCQATLQTRINRIVNRKFSAMSVSNGNSETSAEFWSADSSSLGSSKKNSESSTKTQI--SIRTPEPAYSGIRKGYAAISSPASVDSEQSSFNHSGFEILLNDGLSGVASVGDSGLSEEQKEQIRFAQVGRKKDYVHNERIDGKATNVLQGLELHTRVFNAEEQKTIVECVYNLQHMGQKRQLRARTYSEPRKWMRGKGRVTMQFGCCYNYAVDKNGNPPGIVRDEEVDPLPPLFKQMIKRMVRWHVLPSTCVPNSCIVNIYDEGDCIPPHIDHHDFLRPFCTVSFLTECKILFGANLKILSPGEFAGPISIPLPVGSVLILNGNGADVAKHCVPGVPAKRISITFRRMDESKMPYRYVPEQELLGLKPLMLSPMTKSPVQQKQEEKTKLTHHESRVVAATSIKSFLVGEDDFPSLGSANSLNRQRVSKKS 468
BLAST of XM_017368864.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1Q3B051 ((2OG-FeII_Oxy_2 domain-containing protein {ECO:0000313|EMBL:GAV61162.1}))
HSP 1 Score: 552.362 bits (1422), Expect = 0.000e+0
Identity = 268/426 (62.91%), Postives = 329/426 (77.23%), Query Frame = 0
Match: A0A1Q3B051 ((2OG-FeII_Oxy_2 domain-containing protein {ECO:0000313|EMBL:GAV61162.1}))
HSP 1 Score: 552.362 bits (1422), Expect = 0.000e+0
Identity = 268/426 (62.91%), Postives = 329/426 (77.23%), Query Frame = 0
Query: 1 MVGKPAGESPESGTGDGWLNLINGLEREEMVEILSRGVCDQCQSNIQARVLDLLNKKYQNISISEIASESSPEFKSADSSNLDSQQKSLESSIKTP------SWGSLQTPESVYVGLRKASPLTSSPATVNNKQSS-TSIGPDSSLSSALPQTPQSADKEISDEQIERIGFAQVGRNKKFVHIEKINGKATNVLQGLELHTKVFSADEQKKIVECVYDFQRRGQNGQLRERTYSEPTKWMRGKGRITIQFGCCYNYAVDKNGNPPGIIRDEEVDPLPPLFKQMIKRMVRWHVLPPSCVPNSCIVNIYEAGDCIPPHIDHHDFLRPFCTVSFLTESNILFGSNLKISGPGEFEGPVSIPLPMGSVLILNGNGADIAKHCVPAVSAKRISITFRKMDDSKLPFKFTPDPELQGLRPLGSKPLNYSPVQ 419
M G+SPESG +G + L+ L+ EE++E+LS+G C C+S +++R+ +LNKK + + +S ++E+S S +S++ S + +LESS + P SW S + P SVY +K SPA+VN+KQ S T + P+ L+ L + AD +S++Q ERI F+QVGR K FV++E INGK TNVL+GLELHT+VF+A+EQK IVECVY+ QR GQ G LRERTYSEP KWMRGKGR+TIQFGCCYNYAVDK+GNPPGI+RDEEVDPLP LFKQMIKRMVRWH+LPP CVPNSCIVNIY+ GDCIPPHIDHHDFLRPFCT SFLTE NILFGS+LKI GPGEF GPVSIPLP+GSVLILNGNGADIAKHCVP VS KRISITFR MDDSKLP+KF+ DP++ G+RPL PL+ + +Q
Sbjct: 1 MTMDAGGKSPESGADEGCMRLLKRLKTEEILEVLSQGFCQHCESLLESRIHSILNKKVEELPLSNDSAEASTVSLSEKASHMYSPENNLESSTRRPYQLGSSSWSSSRVPASVYSDRQKNYNANYSPASVNSKQKSFTHLDPEIKLNDGLTEVSSVADNRLSEDQKERIRFSQVGREKDFVYMEMINGKTTNVLKGLELHTRVFNAEEQKNIVECVYNLQRMGQKGHLRERTYSEPRKWMRGKGRVTIQFGCCYNYAVDKDGNPPGIVRDEEVDPLPHLFKQMIKRMVRWHILPPKCVPNSCIVNIYDEGDCIPPHIDHHDFLRPFCTASFLTECNILFGSSLKIVGPGEFSGPVSIPLPVGSVLILNGNGADIAKHCVPGVSGKRISITFRTMDDSKLPYKFSHDPDMLGIRPLVFSPLSDALLQ 426
BLAST of XM_017368864.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5C7HAE1 (Fe2OG dioxygenase domain-containing protein {ECO:0000259|PROSITE:PS51471})
HSP 1 Score: 538.88 bits (1387), Expect = 0.000e+0
Identity = 272/452 (60.18%), Postives = 333/452 (73.67%), Query Frame = 0
Match: A0A5C7HAE1 (Fe2OG dioxygenase domain-containing protein {ECO:0000259|PROSITE:PS51471})
HSP 1 Score: 538.88 bits (1387), Expect = 0.000e+0
Identity = 272/452 (60.18%), Postives = 333/452 (73.67%), Query Frame = 0
Query: 6 AGESPESGTGD-GWLNLINGLEREEMVEILSRGVCDQCQSNIQARVLDLLNKKYQNISISEIASESSPEFKSADSSNLDSQQKSLESSIKTPSWGSLQTPESVYVGLRKASPLTSSPATVNNKQSSTSIGPDSS--LSSALPQTPQSADKEISDEQIERIGFAQVGRNKKFVHIEKINGKATNVLQGLELHTKVFSADEQKKIVECVYDFQRRGQNGQLRERTYSEPTKWMRGKGRITIQFGCCYNYAVDKNGNPPGIIRDEEVDPLPPLFKQMIKRMVRWHVLPPSCVPNSCIVNIYEAGDCIPPHIDHHDFLRPFCTVSFLTESNILFGSNLKISGPGEFEGPVSIPLPMGSVLILNGNGADIAKHCVPAVSAKRISITFRKMDDSKLPFKFTPDPELQGLRPLGSKPLNYSPVQNKLKTETITPSVPITAGSTPFSIGKDDFPPLGGSK 454
G SP+SGT + L GL RE+++E+LS+GVC CQ ++ R+L+L+NKK + S+S + N++S K+ +T S SLQT E++++ RK L PA+V+ +Q PDS L+ L D +S+EQ ERI F+QVG +K FVH+E+I+G+A NV+QGLELHT+VF+A+EQK+IVE VY+ Q +GQ GQLRERTYSEP KWMRGKGR+TIQFGCCYNYA DKNGNPPGIIRDE+VDPLPPLFK MIKRMVRWHVLPP+C+PNSCIVNIY+ GDCIPPHIDHHDF+RPFCTVSFLTE NILFGSNLK+ PGEF GPVSIPLP+GSVLILNGNGADIAKHCVPAV AKRISITFRKMDD +LP+KF PDPEL G++P+ PLN S +Q + ET+ S F + DDFPPLG ++
Sbjct: 3 TGNSPDSGTSSRDLMGLFKGLGREDILEVLSQGVCLHCQPLLETRILNLVNKKLNDSSLS--------------NDNVESMNKTPRLQ-ETMSPTSLQTQEALHLARRKGHAL---PASVSGRQH-----PDSEILLNDGLSGGLSEGDGGLSEEQKERIRFSQVGGDKDFVHVERIDGRAKNVIQGLELHTRVFNAEEQKRIVEYVYNLQHKGQKGQLRERTYSEPRKWMRGKGRVTIQFGCCYNYAADKNGNPPGIIRDEDVDPLPPLFKLMIKRMVRWHVLPPTCIPNSCIVNIYDEGDCIPPHIDHHDFVRPFCTVSFLTECNILFGSNLKVLSPGEFSGPVSIPLPVGSVLILNGNGADIAKHCVPAVPAKRISITFRKMDDCRLPYKFLPDPELMGIKPMVYSPLNKSRIQ---QNETLKKS-----NGNSFMVENDDFPPLGSNR 423
BLAST of XM_017368864.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6H8X7 (Fe2OG dioxygenase domain-containing protein {ECO:0000259|PROSITE:PS51471})
HSP 1 Score: 536.184 bits (1380), Expect = 0.000e+0
Identity = 267/464 (57.54%), Postives = 334/464 (71.98%), Query Frame = 0
Match: F6H8X7 (Fe2OG dioxygenase domain-containing protein {ECO:0000259|PROSITE:PS51471})
HSP 1 Score: 536.184 bits (1380), Expect = 0.000e+0
Identity = 267/464 (57.54%), Postives = 334/464 (71.98%), Query Frame = 0
Query: 1 MVGKPAGESPESGTGDGWLNLINGLEREEMVEILSRGVCDQCQSNIQARVLDLLNKKYQNISISEIASESSPEFKSADSSNLDSQQKSLESSIKTPSWGSLQTPESVY-VGLRKASPLTSSPATVNNKQSSTSIGPDSSLSSALPQTPQSADKEISDEQIERIGFAQVGRNKKFVHIEKINGKATNVLQGLELHTKVFSADEQKKIVECVYDFQRRGQNGQLRERTYSEPTKWMRGKGRITIQFGCCYNYAVDKNGNPPGIIRDEEVDPLPPLFKQMIKRMVRWHVLPPSCVPNSCIVNIYEAGDCIPPHIDHHDFLRPFCTVSFLTESNILFGSNLKISGPGEFEGPVSIPLPMGSVLILNGNGADIAKHCVPAVSAKRISITFRKMDDSKLPFKFTPDPELQGLRPLGSKPLNYSPVQNKLKTETITPSVPITAGSTPFSIGKDDFPPLGGSKSVKRRPGSR 463
M G A + ++ GDG + L+ L+ E++E+LS G C C++ ++ RV L+NKK+ IS+S + +ESS S ++ +T SWG ++TPESV VG ++A +S + + S + L+ L D +S+E+ E+I +Q+GR K FVHIE+I+G+ NV+QGLELHT+VF+++EQKKIVECVY+ QR GQ G LRERTYSEP KWMRGKGR+TIQFGCCYNYAVDKNGNPPGIIR+EEVDPLPPLFKQMIKRMVRWH+LPP+CVPNSCIVNIY+ GDCIPPHIDHHDFLRPFCTVSFLTE NILFGS+LKI GEF GPVSI LP GSVLILNGNGAD+AKHCVPAV AKRISITFRKMD+S+LP+K++PD EL +RPL +PL +P+Q + T S S+ + KDDFPPLG KS R+ G++
Sbjct: 1 MTGSMAEKRSDAVCGDGLMGLLQKLDHSEILEVLSGGFCKNCEAVLEDRVRALMNKKFTEISLSNVKTESS------------SFSSPTKNGSETSSWGPIRTPESVSSVGRKEAVSSSSPVSVSSKPHLSDYSKVEILLNDGLGGNSSVIDTGLSEEEKEQIRLSQIGRKKDFVHIERIDGRTMNVIQGLELHTRVFNSEEQKKIVECVYNLQRMGQKGMLRERTYSEPKKWMRGKGRVTIQFGCCYNYAVDKNGNPPGIIREEEVDPLPPLFKQMIKRMVRWHILPPTCVPNSCIVNIYDEGDCIPPHIDHHDFLRPFCTVSFLTECNILFGSSLKILDAGEFSGPVSISLPKGSVLILNGNGADVAKHCVPAVPAKRISITFRKMDESRLPYKYSPDRELLNVRPLAHRPLINTPLQQQKNTVIRHESRISQQSSSSPHLDKDDFPPLGAWKSDSRKRGNK 452
BLAST of XM_017368864.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7GBI7 (Fe2OG dioxygenase domain-containing protein {ECO:0000259|PROSITE:PS51471})
HSP 1 Score: 533.487 bits (1373), Expect = 0.000e+0
Identity = 284/472 (60.17%), Postives = 346/472 (73.31%), Query Frame = 0
Match: A0A7J7GBI7 (Fe2OG dioxygenase domain-containing protein {ECO:0000259|PROSITE:PS51471})
HSP 1 Score: 533.487 bits (1373), Expect = 0.000e+0
Identity = 284/472 (60.17%), Postives = 346/472 (73.31%), Query Frame = 0
Query: 1 MVGKPAGESPESGTGDGWLNLINGLEREEMVEILSRG--VCDQCQSNIQARVLDLLNKKYQNISISEIASESSPEFKSADSSNLDSQQKSLESSIKTPSWGSLQTPE-SVYVGLRKASPLTSSPATVNNKQSSTSIGPDSSLSSALPQTPQSADKEISDEQIERIGFAQVGRNKKFVHIEKINGKATNVLQGLELHTKVFSADEQKKIVECVYDFQRRGQNGQLRERTYSEPTKWMRGKGRITIQFGCCYNYAVDKNGNPPGIIRDEEVDPLPPLFKQMIKRMVRWHVLPPSCVPNSCIVNIYEAGDCIPPHIDHHDFLRPFCTVSFLTESNILFGSNLKISGPGEFEGPVSIPLPMGSVLILNGNGADIAKHCVPAVSAKRISITFRKMDDSKLPFKFTPDPELQGLRPLGSKPLNYSPVQ-NKLKTETIT---PSVPITAGSTPFSIG--KDDFPPLGGSKSVKRRPGSR 463
M G+ + + PES GDG L+ L R+E++E LS G C CQ +Q R+L+L+NKK +S+S ++S EF SA+SS+ +++ +SS K+ SW S++TPE + + G+R + SSPA+V+ KQ S + G + +EQ ER FAQ+GR K +VHIE+I+GKATNVLQGLELHT+VF+ +EQKKIV+ VY+ QR GQNGQLR RTY+EP KWMRGKGR+TIQFGCCYNYAVDKNGNPPGIIRDEEVDPLPPLFKQMI+RMVRWH+LPP+CVPNSCIVNIY+ GDCIPPHIDHHDF RPFCTVSFLTE NILFG+NLKI GPGEF GPVSI LP+GSVLILNGNGADIAKHCVP V A+RISITFRKMDDSK P+ F DP+L G++PL P S VQ N+ + IT +V I A ++ SI KDDFPPLG V + G+R
Sbjct: 1 MTGEYSSKVPESAAGDGLAGLLKNLGRDEILEALSDGDGFCLHCQDLLQTRILNLINKKTSELSVSSGNGQNSVEFWSANSSSSSVLEQNSQSSTKSTSWSSIRTPEPAGHSGIRNGF-VNSSPASVDIKQISLNDGLG-----------------VMEEQKERTRFAQIGRKKDYVHIERIDGKATNVLQGLELHTQVFNTEEQKKIVDRVYNLQRMGQNGQLRARTYTEPKKWMRGKGRVTIQFGCCYNYAVDKNGNPPGIIRDEEVDPLPPLFKQMIQRMVRWHILPPTCVPNSCIVNIYDEGDCIPPHIDHHDFFRPFCTVSFLTECNILFGANLKILGPGEFSGPVSIALPVGSVLILNGNGADIAKHCVPGVPARRISITFRKMDDSKQPYSFAADPDLVGIKPLVYSPTIKSRVQENQKENNKITRPQEAVGIAAEASNSSIFNVKDDFPPLGSLNPVNKLRGNR 454
BLAST of XM_017368864.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P5Z7T8 ((RNA demethylase ALKBH5-like {ECO:0000313|RefSeq:XP_022748612.1}))
HSP 1 Score: 533.102 bits (1372), Expect = 0.000e+0
Identity = 275/483 (56.94%), Postives = 330/483 (68.32%), Query Frame = 0
Match: A0A6P5Z7T8 ((RNA demethylase ALKBH5-like {ECO:0000313|RefSeq:XP_022748612.1}))
HSP 1 Score: 533.102 bits (1372), Expect = 0.000e+0
Identity = 275/483 (56.94%), Postives = 330/483 (68.32%), Query Frame = 0
Query: 1 MVGKPAGESPESGTGDGWLNLINGLEREEMVEILSRGVCDQCQSNIQARVLDLLNKKYQNISISEIASESSPEFKSADSSNLDSQQKSLESSIKTPSWGSLQTPESVYVGLRKASPLTSSPATVNNKQ-SSTSIGPDSSLSSALPQTPQSADKEISDEQIERIGFAQVGRNKKFVHIEKINGKATNVLQGLELHTKVFSADEQKKIVECVYDFQRRGQNGQLRERTYSEPTKWMRGKGRITIQFGCCYNYAVDKNGNPPGIIRDEEVDPLPPLFKQMIKRMVRWHVLPPSCVPNSCIVNIYEAGDCIPPHIDHHDFLRPFCTVSFLTESNILFGSNLKISGPGEFEGPVSIPLPMGSVLILNGNGADIAKHCVPAVSAKRISITFRKMDDSKLPFKFTPDPELQGLRPLGSKPLNYS--------PV-----------QNKLKTETITPSVPITAGSTP----FSIGKDDFPPLGGSKSVKRR 459
M G G+ PES TG+G + L+ L R+E+ E+ S+G C C++ ++ R+ D+LNK+ S+ + + + D S L + E IK P S ++ +P + ++KQ + + D L+ L T D +S+EQ E+I F QVGR K FVH+EKINGK+TNVL+GLELHT+VF+A+E+KKIVECVY+ QR GQ GQLRERTYSEP KWMRGKGR+TIQFGCCYNYAVDKNGNPPGIIRDEEVDPLPPLFKQMIKRMVRWH+LPP+CVPNSCIVNIY+ GDCIPPHIDHHDF+RPFCTVSFLTE NILFGS+LKI PGEF GPVSIPLP+GSVLILNGNGADIAKHCVPAV KRISITFR+MDDSK+P+KF+ DPEL G++PL PL S PV QN+ + P T F GKDDFPPLG K V R
Sbjct: 1 MDGDFPGKLPESSTGEGIIGLLKTLNRDELFEVFSQGFCQHCEALLEKRIHDILNKRVSETSLLYDSKQGLTVCSAKDVSGLCPSENGSEPIIKLPCQQSTVAFNTIL-----------TPNSESSKQLARNHMNSDILLNDGLGGTSFVTDNGLSEEQKEQIRFLQVGRKKDFVHMEKINGKSTNVLKGLELHTEVFNAEERKKIVECVYNLQRMGQKGQLRERTYSEPRKWMRGKGRVTIQFGCCYNYAVDKNGNPPGIIRDEEVDPLPPLFKQMIKRMVRWHILPPTCVPNSCIVNIYDEGDCIPPHIDHHDFVRPFCTVSFLTECNILFGSSLKIVRPGEFSGPVSIPLPVGSVLILNGNGADIAKHCVPAVPGKRISITFRRMDDSKVPYKFSSDPELLGIKPLIVSPLAKSTPQGHSQRPVVYSSFVKSIVQQNQHRNGQFAKDKPEETAKTTKNDSFLCGKDDFPPLGRVKKVGSR 472
BLAST of XM_017368864.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2C9VHM6 (Fe2OG dioxygenase domain-containing protein {ECO:0000259|PROSITE:PS51471})
HSP 1 Score: 532.717 bits (1371), Expect = 0.000e+0
Identity = 269/482 (55.81%), Postives = 338/482 (70.12%), Query Frame = 0
Match: A0A2C9VHM6 (Fe2OG dioxygenase domain-containing protein {ECO:0000259|PROSITE:PS51471})
HSP 1 Score: 532.717 bits (1371), Expect = 0.000e+0
Identity = 269/482 (55.81%), Postives = 338/482 (70.12%), Query Frame = 0
Query: 1 MVGKPAGESPESGTGDGWLNLINGLEREEMVEILSRGVCDQCQSNIQARVLDLLNKKYQNISISEIASESSPEFKSADSSNLDSQQKSLESSIKTPSWGSL-----QTPESVYVGLRKASPLTSSPATVNNKQSSTSIGPDSSLSSALPQTPQSADKEISDEQIERIGFAQVGRNKKFVHIEKINGKATNVLQGLELHTKVFSADEQKKIVECVYDFQRRGQNGQLRERTYSEPTKWMRGKGRITIQFGCCYNYAVDKNGNPPGIIRDEEVDPLPPLFKQMIKRMVRWHVLPPSCVPNSCIVNIYEAGDCIPPHIDHHDFLRPFCTVSFLTESNILFGSNLKISGPGEFEGPVSIPLPMGSVLILNGNGADIAKHCVPAVSAKRISITFRKMDDSKLPFKFTPDPELQGLRPLGSKPLNYSPVQNKLKTE----------------------TITPSVPITAGSTPFSIGKDDFPPLGGSKS 455
M G + +SPE+ G+ ++ L+ ++ EE++++LS G C CQ+ ++ R+ +L+N K +S+S +E S EF+SAD+ +++S +LES +P SL Q ES + + +SS + ++++S G + L+ L D +S+EQ E+ F++VGR K FV E+INGK TN+L+GLELHTKVF+ +EQKKIVECVY+ QR G+ GQLRERTYSEPTKWMRGKGRIT+QFGCCYNYA+DKNG PGI++DE VDPLPP FKQMIKRMVRWHVLP +C+PNSCIVNIY+ GDCIPPHIDHHDFLRPFCTVSFLTE NI+FGSNLKI PGEF GPVSIPLP+GSVL+LNGNGADIAKHC+P V AKRISITFRKMDDSKLP++F+PDPEL G++PL PL SP Q + + T T S T F I KDDFPPLG SKS
Sbjct: 2 MEGDMSRKSPEARRGEDFIELLKTMDHEEVLQVLSGGFCQHCQALLETRIHNLINAKVNKMSLSNGGTEVSKEFQSADAISINSSNGNLES--LSPGKASLTSSSNQESESYSARQKGVTANSSSASVNSHQKSIDHPGFEILLNDGLADVSSVVDNGLSEEQKEQFRFSRVGRKKDFVCSERINGKPTNILKGLELHTKVFNPEEQKKIVECVYNLQRMGRKGQLRERTYSEPTKWMRGKGRITMQFGCCYNYAMDKNGKAPGIVQDEVVDPLPPTFKQMIKRMVRWHVLPATCIPNSCIVNIYDEGDCIPPHIDHHDFLRPFCTVSFLTECNIVFGSNLKILSPGEFSGPVSIPLPVGSVLVLNGNGADIAKHCIPGVPAKRISITFRKMDDSKLPYQFSPDPELLGIKPLIYSPLTKSPYQQSQQQKPFGYPSVVKSLVQQSNHQNGNLTATKSRSGNTNGTSFFINKDDFPPLGSSKS 481
BLAST of XM_017368864.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6R1D2 ((RNA demethylase {ECO:0000313|EMBL:PSS19049.1}))
HSP 1 Score: 532.717 bits (1371), Expect = 0.000e+0
Identity = 277/467 (59.31%), Postives = 331/467 (70.88%), Query Frame = 0
Match: A0A2R6R1D2 ((RNA demethylase {ECO:0000313|EMBL:PSS19049.1}))
HSP 1 Score: 532.717 bits (1371), Expect = 0.000e+0
Identity = 277/467 (59.31%), Postives = 331/467 (70.88%), Query Frame = 0
Query: 1 MVGKPAGESPESGTGDGWLNLINGLEREEMVEILSRG--VCDQCQSNIQARVLDLLNKKYQNISISEIASESSPEFKSADSSNLDSQQKSLESSIKTPSWGSLQTPESVYVGLRKASPLTSSPATVNNKQSSTSIGPDSSLSSALPQTPQSADKEISDEQIERIGFAQVGRNKKFVHIEKINGKATNVLQGLELHTKVFSADEQKKIVECVYDFQRRGQNGQLRERTYSEPTKWMRGKGRITIQFGCCYNYAVDKNGNPPGIIRDEEVDPLPPLFKQMIKRMVRWHVLPPSCVPNSCIVNIYEAGDCIPPHIDHHDFLRPFCTVSFLTESNILFGSNLKISGPGEFEGPVSIPLPMGSVLILNGNGADIAKHCVPAVSAKRISITFRKMDDSKLPFKFTPDPELQGLRPLGSKPLNYSPVQ-----NKLKTETITPSVPITAGSTPFSIGKDDFPPLGGSKSVKRRP 460
M G+ +GES ESG G G ++ + REE++EILS G C C++ +Q+RV ++ KK S S ++SS EF SA+S+ S S+QTPE V+ G RK P SP +VN+KQ S I ++ + L P A + +EQ ER FAQ+GR K FVHIE+I+G+A NVLQGLELH++VFS +EQK+IV+CVY FQR GQ GQLR RTYSEP KWMRGKGR+TIQFGCCYNYAVDKNGN PGI+R+EEVDPLPPLFKQMIKRMVRWHVLPP+CVPNSCIVNIY+ GDCIPPHIDHHDFLRPFCTVSFLTE NILFGSNLK+ GEF GPVS+PLP+GSVLILNGNGAD+AKHCVP V A+RISITFRKMDDSKLP+++ DPEL G+RP P+ Q N T V + A + KDDFPPL GS S+ +P
Sbjct: 1 MTGEFSGESTESGAGCGLRGMLKNMSREEILEILSEGEGFCQHCEALLQSRVQRIMKKKSSEQSESSGNNQSSTEFWSANST----------------SRSSIQTPEPVHSGTRKVFP-NLSPESVNSKQQSFHI--SATRNGGLSGVPSLAHNNLLEEQ-ERARFAQIGRKKDFVHIERIDGRAMNVLQGLELHSRVFSPEEQKEIVDCVYRFQRMGQKGQLRARTYSEPKKWMRGKGRVTIQFGCCYNYAVDKNGNLPGIVRNEEVDPLPPLFKQMIKRMVRWHVLPPTCVPNSCIVNIYDEGDCIPPHIDHHDFLRPFCTVSFLTECNILFGSNLKVVSAGEFAGPVSVPLPVGSVLILNGNGADVAKHCVPGVPARRISITFRKMDDSKLPYRYASDPELMGIRPFARSPITKMLAQPPPPENNNNTRCEPIDVAVKASNNSVFSKKDDFPPL-GSLSIGNKP 446
BLAST of XM_017368864.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J1AGT3 ((RNA demethylase ALKBH5-like {ECO:0000313|RefSeq:XP_021286173.1}))
HSP 1 Score: 530.02 bits (1364), Expect = 0.000e+0
Identity = 271/475 (57.05%), Postives = 324/475 (68.21%), Query Frame = 0
Match: A0A6J1AGT3 ((RNA demethylase ALKBH5-like {ECO:0000313|RefSeq:XP_021286173.1}))
HSP 1 Score: 530.02 bits (1364), Expect = 0.000e+0
Identity = 271/475 (57.05%), Postives = 324/475 (68.21%), Query Frame = 0
Query: 1 MVGKPAGESPESGTGDGWLNLINGLEREEMVEILSRGVCDQCQSNIQARVLDLLNKKYQNISISEIASESSPEFKSADSSNLDSQQKSLESSIKTPSWGSLQTPESVYVGLRKASPLTSSPATVNNKQ-SSTSIGPDSSLSSALPQTPQSADKEISDEQIERIGFAQVGRNKKFVHIEKINGKATNVLQGLELHTKVFSADEQKKIVECVYDFQRRGQNGQLRERTYSEPTKWMRGKGRITIQFGCCYNYAVDKNGNPPGIIRDEEVDPLPPLFKQMIKRMVRWHVLPPSCVPNSCIVNIYEAGDCIPPHIDHHDFLRPFCTVSFLTESNILFGSNLKISGPGEFEGPVSIPLPMGSVLILNGNGADIAKHCVPAVSAKRISITFRKMDDSKLPFKFTPDPELQGLRPL-------------GSKPLNYSPV----------QNKLKTETITPSVPITAGSTPFSIGKDDFPPLG 451
M G + PE TG+G L L+ L R+E++E+LS+G C C+ ++ R+ +LNK+ + +S L S + ES IK+P + +AS P +V++KQ + TS D L+ L T + D +S+EQ E+I F+QVGR K FVH+EKINGKATNVL+GLELHTKVF+A+EQKKIV+CVY QR GQ GQLRERTYSEP KWMRGKGR+TIQFGCCYNY VDKNGNPPGI+RDEEVDPLPPLFKQMIKRMVRWH+LPP+CVPNSCIVNIY+ DCIPPHIDHHDFLRPFCTVSFLTESNILFGS+LKI PGEF GPVSIPLP+GSVLILNGNGADIAKHCVP V KRISITFR+MDDSKLP+KF+ DPEL G++PL +P+ +S QN + T + F GK+DFPPLG
Sbjct: 1 MSGDSLAKMPECVTGEGRLGLLKALNRDEILEVLSQGFCQHCEPLLEERIQGVLNKRV------------------SKTSGLYSSENDSESVIKSPDHEAT-----------RASNAIPPPNSVSSKQLARTSANSDMLLNDGLGGTSSAIDNGLSEEQKEQIRFSQVGRKKDFVHMEKINGKATNVLKGLELHTKVFNAEEQKKIVQCVYSLQRMGQKGQLRERTYSEPRKWMRGKGRVTIQFGCCYNYTVDKNGNPPGIMRDEEVDPLPPLFKQMIKRMVRWHILPPTCVPNSCIVNIYDESDCIPPHIDHHDFLRPFCTVSFLTESNILFGSSLKIVSPGEFSGPVSIPLPVGSVLILNGNGADIAKHCVPGVPGKRISITFRRMDDSKLPYKFSSDPELLGIKPLIFSPSAKSAPQGHHQRPVIHSSFVKAVVQQNQHQNDQRVRDKAEESAKTTKNDSFLAGKNDFPPLG 446
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7BYQ0 | E-Value: 0.000e+0, PID: 63.54 | (Putative Oxidoreductase {ECO:0000313|EMBL:MPA7219... [more] |
| A0A5J5BRL7 | E-Value: 0.000e+0, PID: 61.28 | Fe2OG dioxygenase domain-containing protein {ECO:0... [more] |
| A0A1Q3B051 | E-Value: 0.000e+0, PID: 62.91 | (2OG-FeII_Oxy_2 domain-containing protein {ECO:000... [more] |
| A0A5C7HAE1 | E-Value: 0.000e+0, PID: 60.18 | Fe2OG dioxygenase domain-containing protein {ECO:0... [more] |
| F6H8X7 | E-Value: 0.000e+0, PID: 57.54 | Fe2OG dioxygenase domain-containing protein {ECO:0... [more] |
| A0A7J7GBI7 | E-Value: 0.000e+0, PID: 60.17 | Fe2OG dioxygenase domain-containing protein {ECO:0... [more] |
| A0A6P5Z7T8 | E-Value: 0.000e+0, PID: 56.94 | (RNA demethylase ALKBH5-like {ECO:0000313|RefSeq:X... [more] |
| A0A2C9VHM6 | E-Value: 0.000e+0, PID: 55.81 | Fe2OG dioxygenase domain-containing protein {ECO:0... [more] |
| A0A2R6R1D2 | E-Value: 0.000e+0, PID: 59.31 | (RNA demethylase {ECO:0000313|EMBL:PSS19049.1})[more] |
| A0A6J1AGT3 | E-Value: 0.000e+0, PID: 57.05 | (RNA demethylase ALKBH5-like {ECO:0000313|RefSeq:X... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |