Resource Type:
Polypeptide
Name:
XM_017368325.1
Identifier:
XM_017368325.1-protein
Sequence:
MDRFYGKRAVGGLCVPKNASLVSRDADNRNGDAQFCNRLGCSGRLKYTKA
PQIGSPRIPKPLRPSTRSTSAKESRGSISSTSSVVNIAKIRYPDSRRKLR
SEVEKETSDSSRSQNEIEIQELTDSQRTKGRGFQSEPRESESGIVPSVKV
RSSNVVSKARNPNSFYKRPGLTNQDALPSSSSSPSGSNDQGPSGSTNASR
QGLRSLRTSISAALRPGSSLSESNISKKKDIVKKRSPEREASSSSGGKNK
TSEQPSDGGHISNPTNGFTFPDHRRNRNLPSRRENGVTSAQSRRLPNSNT
RTGHPSLVNRTILSSAEASVFRRQMPRSERNIFANANSLREEASSGGSSS
YSHSSSGNYDDHVTTTPSADLGIARLVNRDGAQQYNMDNIAEVLLALERI
EQQDEELTYEQLLALGTNYFFGGLGVYDQHRDMRLEIDNMSYEELLALEE
KMGNVSTALSEDALLKSVTMSTYQPVCSDEEEAASSVKGEDTKCSICQEE
YVAGDEVGKIGCEHGYHMECIKQWLQLKNWCPICKASVEPRETS
Sequence Length:
544
Sequence Checksum:
eabb9403a919c435f4df4fc830907fc6
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017368325.1, derives from mRNA, XM_017368325.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017368325.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017368325.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5A8R1 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})
HSP 1 Score: 453.751 bits (1166), Expect = 3.242e-152
Identity = 284/553 (51.36%), Postives = 354/553 (64.01%), Query Frame = 0
Match: A0A5J5A8R1 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})
HSP 1 Score: 453.751 bits (1166), Expect = 3.242e-152
Identity = 284/553 (51.36%), Postives = 354/553 (64.01%), Query Frame = 0
Query: 1 MDRFYGKRAVGGLCVP-KNASLVSRDA-DNRNGDAQFCNRLGCSGRLKYTKAPQIGSPRIPKPLRPSTRSTSAKESRGSISSTSSVVNIAKIRYPDSRRKLRSEVEKETSDSSRSQNEIEIQELTDSQRTKGRGFQSEPRESESGIVPSVKVRSSNVVSKARNPNSFYKRPGLTNQDALPSSSSSPSGSNDQGPSGSTNASRQGLRSLRT-SISAALRPGSSLSESNISKKKDIVKKRSPEREASSSSGGKNKTSEQPSDGGHISNPTNGFTFPDHRRNRNLPSRRENGVTSAQSRRLPNSNTRTGHPSLVNRTILSSAEASVFRRQMPRSERNIFA----NANSLREEASSGGSSSYSHSS--SGNYDDHVTTTPSADLGIARL-VNRDGAQQYNMDNIAEVLLALERIEQQDEELTYEQLLALGTNYFFGGLGVYDQHRDMRLEIDNMSYEELLALEEKMGNVSTALSEDALLKSVTMSTYQPVCSDEEEAASSVKGEDTKCSICQEEYVAGDEVGKIGCEHGYHMECIKQWLQLKNWCPICKASVEPRET 543
MD F GKRAVGGL +P K A + RD D + + QFCNR+GC+GRL +TK QIG PK R RS+S KE GS T SVV A+ + +SR+KL S+ E E+S++S Q+E E+ E S R GFQSE +E+ESG V ++V SS++ S +R ++ GL NQD L +S S + + QGP S NA+R GLR+LR SIS L G S SE N+S++KDIVKKR+PE E+SSS+ G K + GH S TNG + D RR RN RR+NGVTS ++RR N NTRT + N LS E+ Q+P+S+ + A +++ EAS S+SYS S + + P A+LGI VN DG ++YNMD IAEVLLALERIEQ DEELTYEQLLAL TN F GGLG YD HRDMRL+IDNMSYEELLALEEKMG VSTAL E+AL K + S YQP ++ + +D+KCSICQEEYV G EVGK+ CEHGYH+ CI QWLQ KNWCPICK S P ++
Sbjct: 1 MDAFSGKRAVGGLVIPRKGAGITLRDTTDKSDQNVQFCNRIGCNGRLNHTKGSQIGCSGKPKSSRSPFRSSSGKEIIGSSIKTCSVVTSARKSFQESRKKLSSQSETESSETSSVQDEPEVSE-PPSLRKIQMGFQSELKETESGEVRLIEVGSSSIESNSRPQKILRQKSGLGNQDTLSGASVSTASKSSQGPRNSANANRYGLRNLRCNSISDVLPSGCSSSEPNLSRRKDIVKKRNPEGESSSSAVGGKKNIGASFEDGHSSVSTNGISIYDSRRARNWLPRRDNGVTSVRTRRSINDNTRTRIANQGNGNNLSLTESLHVTPQVPQSDMPVGAYVPSSSHQYSAEASLSRSNSYSRPGRISSSLPSLMPIGP-AELGITHSSVNHDGLRRYNMDGIAEVLLALERIEQ-DEELTYEQLLALETNLFLGGLGFYDHHRDMRLDIDNMSYEELLALEEKMGTVSTALPEEALSKCLRRSIYQPTSLEDGTMDCNGDEDDSKCSICQEEYVVGVEVGKLECEHGYHVVCIHQWLQQKNWCPICKTSAAPSQS 550
BLAST of XM_017368325.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A9A8 ((Putative E3 ubiquitin-protein ligase RLIM {ECO:0000313|EMBL:MPA53412.1}) (2.3.2.27 {ECO:0000313|EMBL:MPA53412.1}))
HSP 1 Score: 434.106 bits (1115), Expect = 1.265e-144
Identity = 283/561 (50.45%), Postives = 353/561 (62.92%), Query Frame = 0
Match: A0A5B7A9A8 ((Putative E3 ubiquitin-protein ligase RLIM {ECO:0000313|EMBL:MPA53412.1}) (2.3.2.27 {ECO:0000313|EMBL:MPA53412.1}))
HSP 1 Score: 434.106 bits (1115), Expect = 1.265e-144
Identity = 283/561 (50.45%), Postives = 353/561 (62.92%), Query Frame = 0
Query: 1 MDRFYGKRAVGGLCVPKNAS-LVSRDAD-NRNGDAQFCNRLGCSGRLKYTKAPQIGSPRIPKPLRPSTRSTSAKESRGSISSTSSVVNIAKIRYPDSRRKLRSEVEKETSDSSRSQNEIEIQELTDSQRTKGRGFQSEPRESESGIVPSVKVRSSNVVSKARNPNSFYKRPGLTNQDALPSSSSSPSGSND--QGPSGSTNASRQGLRSLRT-SISAALRPGSSLSESNISKKKDIVKKRSPEREASSSSGGKNKTSEQPSDGGHISNPTNGFTFPDHRRNRNLPSRRENGVTSAQSRRLPNSNTRTGHPSLVNRTILSSAEASVFRRQMPRSERNIFANANS----LREEASSGGSSSYSHSSSGNYDDHVTTTP--SADLGIAR-LVNRDGAQ---QYNMDNIAEVLLALERIEQQDEELTYEQLLALGTNYFFGGLGVYDQHRDMRLEIDNMSYEELLALEEKMGNVSTALSEDALLKSVTMSTYQPVCSDEEEAASSVKG--EDTKCSICQEEYVAGDEVGKIGCEHGYHMECIKQWLQLKNWCPICKASVEPRETS 544
MD + GKRAV VP+ S V RD NR+ +AQFCNR+GC+GRL YTK Q+G K R S S+S+KE GS + T SVV A+ + +SR+ L S +EK++S+ S Q+E E+ EL + + FQSE ++++SG V ++V SS++ S +R F ++ GL NQD L SS P SN QG + NASR GLR+LR SIS L G S SESN+S++KD VKKR+PE E SSS+ GK + DG S T+G + D RR RN P R+NGV S ++R+ N NTRT + N LS E+ + Q+P+ E I A+ S EAS S+SYS S + D+ P A+LGI R L NRDG Q +YNMD IAEVL ALERIE DEELTYEQLLAL TN+F GGL YDQHRDMRL+IDNMSYEELL+LEEKMG VSTALSE+ L K + S YQ E+ G +D KCSICQEEYV GDEVG++ C+HGYHM CI QWLQLKN CPICKAS P ++S
Sbjct: 1 MDEYSGKRAV----VPRKGSGPVLRDTTGNRDQNAQFCNRIGCNGRLNYTKGSQLGCSEKLKSSRSSFHSSSSKEIIGSSTKTLSVVTNARKSFQESRKNLSSHLEKDSSEISSVQDETEVSELPSPGQIR---FQSELKDAKSGEVRLMEVGSSSIASNSRPRKIFRQKSGLGNQDTLLGSSI-PLASNSSCQGTRYNANASRYGLRNLRCNSISDVLPSGCSSSESNLSRRKDTVKKRNPEGEISSSARGKKNSGPSFKDG-RSSVSTSGISISDSRRARNWPPSRDNGVASIRTRKSINGNTRTRLSNQGNGNNLSLTESLLVTPQVPQPEIPIGASVPSSSHQYLAEASPSCSNSYSRPGSNSSDNLPNLMPIGPAELGITRSLANRDGLQALRRYNMDVIAEVLFALERIEH-DEELTYEQLLALETNFFLGGLSFYDQHRDMRLDIDNMSYEELLSLEEKMGTVSTALSEEVLSKCLRRSIYQL-----EDGTMGCNGDEDDNKCSICQEEYVVGDEVGRLECKHGYHMVCIHQWLQLKNLCPICKASAVPSQSS 546
BLAST of XM_017368325.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZVH6 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})
HSP 1 Score: 423.705 bits (1088), Expect = 2.368e-140
Identity = 273/555 (49.19%), Postives = 352/555 (63.42%), Query Frame = 0
Match: A0A5J4ZVH6 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})
HSP 1 Score: 423.705 bits (1088), Expect = 2.368e-140
Identity = 273/555 (49.19%), Postives = 352/555 (63.42%), Query Frame = 0
Query: 1 MDRFYGKRAVGGLCVP-KNASLVSRDA-DNRNGDAQFCNRLGCSGRLKYTKAPQIGSPRIPKPLRPSTRSTSAKESRGSISSTSSVVNIAKIRYPDSRRKLRSEVEKETSDSSRSQNEIEIQELTDSQRTKGRGFQSEPRESESGIVPSVKVRSSNVVSKARNPNSFYKRPGLTNQDALPSSSSS-PSGSNDQGPSGSTNASRQGLRSLRT-SISAALRPGSSLSESNISKKKDIVKKRSPEREASSSSGGKNKTSEQPSDGGHISNPTNGFTFPDHRRNRNLPSRRENGVTSAQSRRLPNSNTRTGHPSLVNRTILSSAEASVFRRQMPRSE----RNIFANANSLREEASSGGSSSYSH--SSSGNYDDHVTTTPSADLGIA-RLVNRDGAQQYNMDNIAEVLLALERIEQQDEELTYEQLLALGTNYFFGGLGVYDQHRDMRLEIDNMSYEELLALEEKMGNVSTALSEDALLKSVTMSTYQPVCSDEEEAASSVKGEDTKCSICQEEYVAGDEVGKIGCEHGYHMECIKQWLQLKNWCPICKASVEPRETS 544
MD++ GKRAVGGL +P K + LV RDA D R+ +AQFCNR+GC+GRL YTK QIG PK R S S+S KE S + T SVV A+ + SR+KL S++E +TS++S Q+E E+ E ++ + GFQS ++S+ G V + ++ S R ++ GL QD L SS S S G + NASR GLR+LR SIS L G S SE +S++KD+VKK+ E E SSS GK + E S+ S TNG + D RR RN P R+NGV S +++R+ N NTRT + N LS +E+ + Q+P+ + N+ ++++ EASS S+SYSH SSSGN + P A+ GI+ VN ++YNMD IAEVLLALERIEQ DEELTYEQLLAL TN F GGLG YDQH D+RL+IDNMSYEELLAL EK+G VSTALS +AL K + S YQP +E + + +D KCSICQEEYV GDE G++ CEHGYH CI+QWL+LKNWCPICKAS P ++S
Sbjct: 1 MDKYSGKRAVGGLFIPRKRSGLVLRDATDTRDRNAQFCNRIGCNGRLNYTKGTQIGCSEKPKSSRSSFHSSSGKEIIESCTRTCSVVTSARKSFQKSRQKLSSQLETDTSETSSVQDEPEVSERPSPEKIQ-IGFQSGLKDSQFGEVNLTEAGCFSMASNNRPRKILGQKSGLGKQDTLLHSSIPLASKSTYYGARNNANASRYGLRNLRCNSISDFLPTGISSSEPKLSRRKDMVKKKISEGERSSSVRGK-RNIEPSSENRRSSVSTNGISICDSRRARNWPPSRDNGVASVRTQRI-NGNTRTRLSNQGNGNNLSLSESLLVIPQVPQPDIAISENVSSSSHQFSAEASSH-SNSYSHPGSSSGNLPSMMPMGP-AEFGISGSSVNHVDFRRYNMDGIAEVLLALERIEQ-DEELTYEQLLALETNLFLGGLGFYDQHSDLRLDIDNMSYEELLALGEKIGTVSTALSAEALSKCLRRSIYQPTSPEEGTMRCNGEEDDNKCSICQEEYVVGDETGRLECEHGYHGVCIQQWLRLKNWCPICKASAVPAQSS 549
BLAST of XM_017368325.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7GIU6 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})
HSP 1 Score: 421.779 bits (1083), Expect = 3.217e-139
Identity = 267/544 (49.08%), Postives = 347/544 (63.79%), Query Frame = 0
Match: A0A7J7GIU6 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})
HSP 1 Score: 421.779 bits (1083), Expect = 3.217e-139
Identity = 267/544 (49.08%), Postives = 347/544 (63.79%), Query Frame = 0
Query: 1 MDRFYGKRAVGGLCVP-KNASLVSRD-ADNRNGDAQFCNRLGCSGRLKYTKAPQIGSPRIPKPLRPSTRSTSAKESRGSISSTSSVVNIAKIRYPDSRRKLRSEVEKETSDSSRS--QNEIEIQELTDSQRTKGRGFQSEPRESESGIVPSVKVRSSNVVSKARNPNSFYKRPGLTNQDALPSSSSS-PSGSNDQGPSGSTNASRQGLRSLRT-SISAALRPGSSLSESNISKKKDIVKKRSPEREASSSSGGKNKTSEQPSDGGHISNPTNGFTFPDHRRNRNLPSRRENGVTSAQSRRLPNSNTRTGHPSLVNRTILSSAEASVFRRQMPRSERNIFANANSLREEASSGGSSSYSHSSSGNYDDHVTTTPSADLGIAR-LVNRDGAQQYNMDNIAEVLLALERIEQQDEELTYEQLLALGTNYFFGGLGVYDQHRDMRLEIDNMSYEELLALEEKMGNVSTALSEDALLKSVTMSTYQPVCSDEEEAASSVKGEDTKCSICQEEYVAGDEVGKIGCEHGYHMECIKQWLQLKNWCPICKAS 537
MD + GKRAVGGL +P K LVSRD A++R+ DA+FCNRLGC+GRL +T++ Q GS + K RPS +++ K+ GS + T S+V + +SR+K+ S++E ++ ++S S Q+E E+ EL +++ +K R ++V SS++ S ++ N F ++ L +D L SS S QG +R GLR+LR SIS + G S SESN++++KD+VKKR+PE E+SSS GK K S S+ S +NG + D RR RN P NGV S ++RR N NTRT + N L+ E + Q+ E +I + S + S+ +S SHS+S + ++LGI R L++RDG Q+YNMD IAEVLLALERIEQ DEELTYEQLLAL TN F GGLG YDQHRDMRL+IDNMSYEELLALEEKMG VSTALSE+ALLK + S YQP S EE A +D KCSICQEEY GDEVG++ CEHGYHM CI+QWLQLKNWCPICKAS
Sbjct: 1 MDEYSGKRAVGGLVIPRKGLGLVSRDTAESRDKDAEFCNRLGCNGRLNHTRSTQNGSEKF-KSSRPSFHASTGKQIIGSSTRTCSMVTNTRKFLQESRKKISSQLETDSCETSSSSVQDEPEVLELDNAESSKVR---------------LMEVGSSSIASNSKPRNVFRQKSVLGTRDTLLGSSVPLACKSTSQG-------ARNGLRNLRCNSISDVVPSGGSSSESNLNRRKDMVKKRNPEVESSSSGRGK-KMSGPLSEDSRSSTSSNGISISDSRRTRNWPPGGNNGVGSVRTRRSINGNTRTRVCNQGNGNSLAPMELCIGTSQVAPPETSIGLDVPSSSRQFSA--EASLSHSTSCR-----SPIGPSELGITRSLISRDGFQRYNMDGIAEVLLALERIEQ-DEELTYEQLLALETNLFLGGLGFYDQHRDMRLDIDNMSYEELLALEEKMGTVSTALSEEALLKCLKRSIYQPT-SPEEGAMRCSGDDDIKCSICQEEYGIGDEVGRLKCEHGYHMVCIEQWLQLKNWCPICKAS 511
BLAST of XM_017368325.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2N9HE69 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})
HSP 1 Score: 400.979 bits (1029), Expect = 1.241e-131
Identity = 252/545 (46.24%), Postives = 347/545 (63.67%), Query Frame = 0
Match: A0A2N9HE69 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})
HSP 1 Score: 400.979 bits (1029), Expect = 1.241e-131
Identity = 252/545 (46.24%), Postives = 347/545 (63.67%), Query Frame = 0
Query: 1 MDRFYGKRAVGGLCVPKNAS-LVSRD-ADNRNGDAQFCNRLGCSGRLKYTKAPQIG-SPRIPKPLRPSTRSTSAKESRGSISSTSSVVNIAKIRYPDSRRKLRSEVEKETSDSSRSQNEIEIQELTDSQRTKGRGFQSEPRESESGIVPSVKVRSSNVVSKARNPNSFYKRPGLTNQDALPSSSSSPSGSNDQGPSGSTNASRQGLRSLR-TSISAALRPGSSLSESNISKKKDIVKKRSPEREASSSSGGKNKTSEQPSDGGHISNPTNGFTFPDHRRNRNLPSRRENGVTSAQSRRLPNSNTRTGHPSLVNRTILSSAEASVFRRQMPRSERNIFAN----ANSLREEASSGGSSSYSHSSSGNYDDH-VTTTPSADLGIAR-LVNRDGAQQYNMDNIAEVLLALERIEQQDEELTYEQLLALGTNYFFGGLGVYDQHRDMRLEIDNMSYEELLALEEKMGNVSTALSEDALLKSVTMSTYQPVCSDEEEAASSVKGEDTKCSICQEEYVAGDEVGKIGCEHGYHMECIKQWLQLKNWCPICK 535
MD + GKRAV G+ VP+ S L+ RD A+NR+ +AQFCNR+GC+GRL Y + Q G S + S+S KE GS S T SV++ + + ++KL S++E ++S++S Q+E E+ ELT RG ++ SES V ++V SS+V S R+ + ++ GL NQD +SS S GS G + AS+ GLR+LR SIS + G S S+S++SK+KD+VK+R+ E E+SS++ GK + G SN ++G + D RR RN+PS ++N V S ++RR N++TR + N LS E SV QM + + +I N ++ +E SG + SYS + H V AD+GI R L+NRDG ++YN+D IAEVL+ALERIEQ DEELTYEQ+L L TN F GL VYDQHRDMRL+IDNMSYEELLALEE+MG VSTAL+E+AL +S+ S Y+ ++ A S + D KCS+CQEEYV GDE+G++ CEH +H+ CI+QWL+LKNWCPICK
Sbjct: 1 MDEYSGKRAVDGIVVPRKGSGLLLRDNANNRDHNAQFCNRIGCNGRLNYARGAQSGCSEKAKSSRPSFRSSSSGKEIIGSSSKTCSVISKGRKSVTEPQKKLSSQLETDSSETSSVQDEPEVSELTAPPGKIQRGSEN----SESSSVTLMEVGSSSVASDTRSRRNLHQGSGLRNQDTQVASSISL-GSKSTGQATHAGASKYGLRNLRCNSISDVIPSGCSSSDSSLSKRKDMVKRRNSEGESSSAARGKKMSGSLLE--GRSSNSSHGISISDSRRARNIPSHKDNSVASVRNRRSVNNHTRARLSNQGNVNSLSPNEPSVAIPQMLQPDTSIDVNGPSSSHQFSDETHSGHAHSYSRPGISSERLHSVRPASPADVGITRSLMNRDGIRRYNIDGIAEVLMALERIEQ-DEELTYEQILVLETNLFLNGLYVYDQHRDMRLDIDNMSYEELLALEERMGTVSTALTEEALSESLKKSIYESTSPEDAAAGCSGEKNDVKCSVCQEEYVVGDELGRLHCEHRFHLGCIQQWLRLKNWCPICK 537
BLAST of XM_017368325.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438K8N6 ((Putative E3 ubiquitin-protein ligase HIP1 {ECO:0000313|EMBL:RVX17566.1}))
HSP 1 Score: 399.053 bits (1024), Expect = 7.072e-131
Identity = 264/557 (47.40%), Postives = 348/557 (62.48%), Query Frame = 0
Match: A0A438K8N6 ((Putative E3 ubiquitin-protein ligase HIP1 {ECO:0000313|EMBL:RVX17566.1}))
HSP 1 Score: 399.053 bits (1024), Expect = 7.072e-131
Identity = 264/557 (47.40%), Postives = 348/557 (62.48%), Query Frame = 0
Query: 1 MDRFYGKRAVGGLCVPKNAS-----LVSRD-ADNRNGDAQFCNRLGCSGRLKYTKAPQIGSPRIPKPLRPSTRSTS-AKESRGSISSTSSVVNIAKIRYPDSRRKLRSEVEKETSDSSRSQNEIEIQELTDSQRTKGRGFQSEPRESESGIVPSVKVRSSNVVSKARNPNSFYKRPGLTNQDALPSSSSS-PSGSNDQGPSGSTNASRQGLRSLRT-SISAALRPGSSLSESNISKKKDIVKKRSPEREASSSSGGKNKTSEQPSDGGHISNPTNGFTFPDHRRNRNLPSRRENGVTSAQSRRLPNSNTRTGHPSLVNRTI---LSSAEASVFRRQMPRSERNIFANANSLREEASSGGSSSYSHSSSG------NYDDHVTTTPSADLGIARL-VNRDGAQQYNMDNIAEVLLALERIEQQDEELTYEQLLALGTNYFFGGLGVYDQHRDMRLEIDNMSYEELLALEEKMGNVSTALSEDALLKSVTMSTYQPVCSDEEEAASSVKGEDTKCSICQEEYVAGDEVGKIGCEHGYHMECIKQWLQLKNWCPICKASV 538
MD + GKRA+ L V + S ++ RD A+NR+ +AQFCNRLGC GRL K Q+GS PK RPS+ ++S KE GS SST V ++ P R+KL + +E ++S++S +E E+ EL RG + ++ES + ++V SS++ S R +F+++ G TNQ L SS + S + Q NASR GLR+LR SIS A+ P S SESN+++KKDI KKR E E+SSS+ GK K+ S+ G S + G + D RR+RN R+NGV S ++RR N NT PS N+ I L E S+ QMP+ E +I AN SL + S G SS+ +S S N + +P+ ++GI+R +NRD ++YNMD IAEVLLALERIEQ DEELTYEQLL L TN F GGL +DQHR+MRL+IDNMSYEELLALEEKMG VSTAL+E+AL K + S Y + ++ + G+D KCSICQEEY+ GDEVGK+ CEHGYH+ CI QWL+LKNWCP+CKAS
Sbjct: 1 MDEYSGKRAINELVVSRKGSGLRPGVILRDTANNRDRNAQFCNRLGCRGRLNSMKGTQLGSLEKPKSSRPSSFTSSSGKEIIGSSSSTGPSVR-KSLQTP--RKKLSAHLETDSSETSSVPDESEVLELIPPPGKIQRGHHPKADDTESSEITPMEVGSSSIASNTRPRRNFHQKSGFTNQATLMGSSVALASKTAGQVARHGANASRYGLRNLRCNSISDAM-PSCSSSESNLTRKKDIGKKRLSEIESSSSARGK-KSGGPSSEYGRNSISSYGVSISDSRRSRNWTPSRDNGVASVRTRRSINGNT--SRPSSSNQGIRNNLLPTEPSITIPQMPQPEISIGANDPSLSHQFSIGSPSSFLNSYSQSDSSSENLHSIMPISPT-EVGISRSSMNRDSLRRYNMDGIAEVLLALERIEQ-DEELTYEQLLVLETNLFLGGLSFHDQHREMRLDIDNMSYEELLALEEKMGTVSTALTEEALSKCLERSIYHTLPTEPGTMDCAGDGDDVKCSICQEEYMVGDEVGKLQCEHGYHVACIHQWLRLKNWCPVCKASA 548
BLAST of XM_017368325.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6H3A3 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})
HSP 1 Score: 399.053 bits (1024), Expect = 7.072e-131
Identity = 264/557 (47.40%), Postives = 348/557 (62.48%), Query Frame = 0
Match: F6H3A3 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})
HSP 1 Score: 399.053 bits (1024), Expect = 7.072e-131
Identity = 264/557 (47.40%), Postives = 348/557 (62.48%), Query Frame = 0
Query: 1 MDRFYGKRAVGGLCVPKNAS-----LVSRD-ADNRNGDAQFCNRLGCSGRLKYTKAPQIGSPRIPKPLRPSTRSTS-AKESRGSISSTSSVVNIAKIRYPDSRRKLRSEVEKETSDSSRSQNEIEIQELTDSQRTKGRGFQSEPRESESGIVPSVKVRSSNVVSKARNPNSFYKRPGLTNQDALPSSSSS-PSGSNDQGPSGSTNASRQGLRSLRT-SISAALRPGSSLSESNISKKKDIVKKRSPEREASSSSGGKNKTSEQPSDGGHISNPTNGFTFPDHRRNRNLPSRRENGVTSAQSRRLPNSNTRTGHPSLVNRTI---LSSAEASVFRRQMPRSERNIFANANSLREEASSGGSSSYSHSSSG------NYDDHVTTTPSADLGIARL-VNRDGAQQYNMDNIAEVLLALERIEQQDEELTYEQLLALGTNYFFGGLGVYDQHRDMRLEIDNMSYEELLALEEKMGNVSTALSEDALLKSVTMSTYQPVCSDEEEAASSVKGEDTKCSICQEEYVAGDEVGKIGCEHGYHMECIKQWLQLKNWCPICKASV 538
MD + GKRA+ L V + S ++ RD A+NR+ +AQFCNRLGC GRL K Q+GS PK RPS+ ++S KE GS SST V ++ P R+KL + +E ++S++S +E E+ EL RG + ++ES + ++V SS++ S R +F+++ G TNQ L SS + S + Q NASR GLR+LR SIS A+ P S SESN+++KKDI KKR E E+SSS+ GK K+ S+ G S + G + D RR+RN R+NGV S ++RR N NT PS N+ I L E S+ QMP+ E +I AN SL + S G SS+ +S S N + +P+ ++GI+R +NRD ++YNMD IAEVLLALERIEQ DEELTYEQLL L TN F GGL +DQHR+MRL+IDNMSYEELLALEEKMG VSTAL+E+AL K + S Y + ++ + G+D KCSICQEEY+ GDEVGK+ CEHGYH+ CI QWL+LKNWCP+CKAS
Sbjct: 1 MDEYSGKRAINELVVSRKGSGLRPGVILRDTANNRDRNAQFCNRLGCRGRLNSMKGTQLGSLEKPKSSRPSSFTSSSGKEIIGSSSSTGPSVR-KSLQTP--RKKLSAHLETDSSETSSVPDESEVLELIPPPGKIQRGHHPKADDTESSEITPMEVGSSSIASNTRPRRNFHQKSGFTNQATLMGSSVALASKTAGQVARHGANASRYGLRNLRCNSISDAM-PSCSSSESNLTRKKDIGKKRLSEIESSSSARGK-KSGGPSSEYGRNSISSYGVSISDSRRSRNWTPSRDNGVASVRTRRSINGNT--SRPSSSNQGIRNNLLPTEPSITIPQMPQPEISIGANDPSLSHQFSIGSPSSFLNSYSQSDSSSENLHSIMPISPT-EVGISRSSMNRDSLRRYNMDGIAEVLLALERIEQ-DEELTYEQLLVLETNLFLGGLSFHDQHREMRLDIDNMSYEELLALEEKMGTVSTALTEEALSKCLERSIYHTLPTEPGTMDCAGDGDDVKCSICQEEYMVGDEVGKLQCEHGYHVACIHQWLRLKNWCPVCKASA 548
BLAST of XM_017368325.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251RDL9 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})
HSP 1 Score: 397.512 bits (1020), Expect = 2.329e-130
Identity = 250/553 (45.21%), Postives = 335/553 (60.58%), Query Frame = 0
Match: A0A251RDL9 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})
HSP 1 Score: 397.512 bits (1020), Expect = 2.329e-130
Identity = 250/553 (45.21%), Postives = 335/553 (60.58%), Query Frame = 0
Query: 1 MDRFYGKRAVGGLCVPKNASLVSRDADNRNGDAQFCNRLGCSGRLKYTKAPQIGSPRIPKPLRPSTRSTSA-KESRGSISSTSSVVNIAKIRYPDSRRKLRSEVEKETSDSSRSQNEIEIQELTDSQRTKGRGFQSEPRESESGIVPSVKVRSSNVVSKARNPNSFYKRPGLTNQDALPSSSSSPSGSNDQGPSGSTNASRQGLRSLRTSISAALRPGSSLSESNISKKKDIVKKRSPEREASSSSGGKNKTSEQPSDGGHISNPTNGFTFPDHRRNRNLPSRRENGVTSAQSRRLPNSNTRTGHPS--LVNR---TILSSAEASVFRRQMPRSERNIFANANS----LREEASSGGSSSYSH--SSSGNYDDHVTTTPSADLGIAR-LVNRDGAQQYNMDNIAEVLLALERIEQQDEELTYEQLLALGTNYFFGGLGVYDQHRDMRLEIDNMSYEELLALEEKMGNVSTALSEDALLKSVTMSTYQPVCSDEEEAASSVKGEDTKCSICQEEYVAGDEVGKIGCEHGYHMECIKQWLQLKNWCPICKASVEP 540
MD + GKRAV L K + LV R+ NR+ +AQ C+RLGCSGRL K QI + RP+ RSTS+ KE GS S + V + + +KL S +E ++S++S Q++ E+ EL RG EP+ +ES +V ++V SS+V S R+ SF +R GL NQD+L S+ S SGS + + + +R GLR+LR + + + P S S + +++ +KKR E E+SS++ GK S G SN ++G + D RR RN+PS R+NG S ++RR T TGH L N+ LS+ + V Q + E +I N+ S L EA +SYS SSSGN + +AD+G +R L+N+DG ++YNMD IAEVLLALERIEQ DEEL++EQ+L L TN F GL YDQHRDMRL+IDNMSYEELLALEE+MG VSTAL E+AL + STYQ +E K +D KCSICQEEYVAGDEVG++ CEH +H+ C+ QWL+LKNWCPICK + P
Sbjct: 1 MDEYSGKRAVNRLVSKKGSGLVLRETPNRDRNAQLCSRLGCSGRLNTVKGAQI--EKAKSSSRPAFRSTSSGKEIIGSSSRSCIAVGNTRKSITEPCKKLSSNLETDSSETSSVQDDPEVSELAPPPGKIQRGLHPEPKNAESSVVTLMEVGSSDVASNTRSRKSFNQRSGLRNQDSLVGSNVS-SGSKNTSQATQASTTRNGLRNLRCNSISDIVPSSCSSSDSSLNRRETIKKRISEGESSSAARGKKMNGS--SSAGQNSNSSHGISISDSRRARNMPSNRDNGAASVRTRR-----TVTGHSRGRLSNQGSGNNLSANGSPVVGPQTSQPEMSINLNSPSSLQQLSHEAPLIRPNSYSRPGSSSGNLHS-IMRAGAADVGFSRSLMNQDGLRRYNMDGIAEVLLALERIEQ-DEELSFEQILVLETNLFLNGLNFYDQHRDMRLDIDNMSYEELLALEERMGTVSTALPEEALSDCLKKSTYQFTPLEESSIECDGKKDDVKCSICQEEYVAGDEVGRLHCEHSFHVNCVNQWLRLKNWCPICKTAAAP 541
BLAST of XM_017368325.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5E4EM09 ((Full=PREDICTED: E3 {ECO:0000313|EMBL:VVA14948.1}))
HSP 1 Score: 391.349 bits (1004), Expect = 6.492e-128
Identity = 247/552 (44.75%), Postives = 333/552 (60.33%), Query Frame = 0
Match: A0A5E4EM09 ((Full=PREDICTED: E3 {ECO:0000313|EMBL:VVA14948.1}))
HSP 1 Score: 391.349 bits (1004), Expect = 6.492e-128
Identity = 247/552 (44.75%), Postives = 333/552 (60.33%), Query Frame = 0
Query: 1 MDRFYGKRAVGGLCVPKNASLVSRDADNRNGDAQFCNRLGCSGRLKYTKAPQIGSPRIPKPLRPSTRSTSAKESRGSISSTSSVVNIAKIRYPDSRRKLRSEVEKETSDSSRSQNEIEIQELTDSQRTKGRGFQSEPRESESGIVPSVKVRSSNVVSKARNPNSFYKRPGLTNQDALPSSSSSPSGSNDQGPSGSTNASRQGLRSLRTSISAALRPGSSLSESNISKKKDIVKKRSPEREASSSSGGKNKTSEQPSDGGHISNPTNGFTFPDHRRNRNLPSRRENGVTSAQSRRLPNSNTRTGH--PSLVNR---TILSSAEASVFRRQMPRSERNIFANANS----LREEASSGGSSSYSH--SSSGNYDDHVTTTPSADLGIAR-LVNRDGAQQYNMDNIAEVLLALERIEQQDEELTYEQLLALGTNYFFGGLGVYDQHRDMRLEIDNMSYEELLALEEKMGNVSTALSEDALLKSVTMSTYQPVCSDEEEAASSVKGEDTKCSICQEEYVAGDEVGKIGCEHGYHMECIKQWLQLKNWCPICKASVEP 540
MD + GKRAV L K + LV R+ NR+ +AQ C+RLGCSGRL K QI + +P ST +S KE GS S + V + + +KL S +E ++S++S Q++ E+ EL RG EP+ +ES +V ++V SS+V S R+ SF +R GL NQD+L S+ S SGS + + + +R GLR+LR + + + P S S + +++ +KKR E E+SS++ GK S G SN ++G + D RR RN+PS ++NG S ++RR T TGH L N+ LS+ + V Q + E +I N+ S L EA +SYS SSSGN + +AD+G +R L+N+DG ++YNMD IAEVLLALERIEQ DEEL++EQ+L L TN F GL YDQHRDMRL+IDNMSYEELLALEE+MG VSTAL E+AL + STYQ +E K +D KCSICQEEYVAGDEVG++ CEH +H+ C+ QWL+LKNWCPICK + P
Sbjct: 1 MDEYSGKRAVNRLVSKKGSGLVLRETPNRDRNAQLCSRLGCSGRLNTVKGAQIEKAKSSRPAFHST--SSGKEIIGSSSRSCIAVGNTRKSITEPCKKLSSNLETDSSETSSVQDDPEVSELAPPPGKIQRGLHPEPKNAESSVVTLMEVGSSDVASNTRSRKSFNQRSGLRNQDSLVGSNVS-SGSKNTSQATRASTTRNGLRNLRCNSISDVVPSSCSSSDSSLNRRETIKKRISEGESSSAAKGKKMNGS--SSAGQNSNSSHGISISDSRRARNMPSNKDNGAASVRTRR-----TVTGHLRGRLSNQGSGNNLSANGSPVVGPQTSQPEMSINLNSPSSLQQLSHEAPLIRPNSYSRPGSSSGNLHS-IMRAGAADVGFSRSLMNQDGLRRYNMDGIAEVLLALERIEQ-DEELSFEQILVLETNLFLNGLNFYDQHRDMRLDIDNMSYEELLALEERMGTVSTALPEEALSDCLKKSTYQFTPLEESSIECDGKKDDVKCSICQEEYVAGDEVGRLHCEHSFHVNCVNQWLRLKNWCPICKTAAAP 540
BLAST of XM_017368325.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4Y1QUA5 ((RING/U-box superfamily protein {ECO:0000313|EMBL:BBG95388.1}))
HSP 1 Score: 384.415 bits (986), Expect = 6.593e-125
Identity = 247/561 (44.03%), Postives = 333/561 (59.36%), Query Frame = 0
Match: A0A4Y1QUA5 ((RING/U-box superfamily protein {ECO:0000313|EMBL:BBG95388.1}))
HSP 1 Score: 384.415 bits (986), Expect = 6.593e-125
Identity = 247/561 (44.03%), Postives = 333/561 (59.36%), Query Frame = 0
Query: 1 MDRFYGKRAVGGLCVPKNASLVSRDADNRNGDAQFCNRLGCSGRLKYTKAPQIGSPRIPKPLRPSTRSTSAKESRGSISSTSSVVNIAKIRYPDSRRKLRSEVEKETSDSSRSQNEIEIQELTDSQRTKGRGFQSEPRESESGIVPSVKVRSSNVVSKARNPNSFYKRPGLTNQDALPSSSSSPSGSNDQGPSGSTNASRQGLRSLRTSISAALRPGSSLSESNISKKKDIVKKRSPEREASSSSGGKNKTSEQPSDGGHISNPTNGFTFPDHRRNRNLPSRRENGVTSAQSRRLPNSNTRTGH--PSLVNR---TILSSAEASVFRRQMPRSERNIFANANS----LREEASSGGSSSYSH--SSSGNYDDHVTTTPSADLGIAR-LVNRDGAQQYNMDNIAEVLLALERIEQQDEELTYEQLLALGTNYFFGGLGVYDQHRDMRLEIDNMSYEELLALEEKMGNVSTALSEDALLKSVTMSTYQPVCSDEEEAASSVKGEDTKCSICQ---------EEYVAGDEVGKIGCEHGYHMECIKQWLQLKNWCPICKASVEP 540
MD + GKRAV L K + LV R+ NR+ +AQ C+RLGCSGRL K QI + +P ST +S KE GS S + V + + +KL S +E ++S++S Q++ E+ EL RG EP+ +ES +V ++V SS+V S R+ SF +R GL NQD+L S+ S SGS + + + +R GLR+LR + + + P S S + +++ +KKR E E+SS++ GK S G SN ++G + D RR RN+PS ++NG S ++RR T TGH L N+ LS+ + V Q + E +I N+ S L EA +SYS SSSGN + +AD+G +R L+N+DG ++YNMD IAEVLLALERIEQ DEEL++EQ+L L TN F GL YDQHRDMRL+IDNMSYEELLALEE+MG VSTAL E+AL + STYQ +E K +D KCSICQ EEYVAGDEVG++ CEH +H+ C+ QWL+LKNWCPICK + P
Sbjct: 12 MDEYSGKRAVNRLVSKKGSGLVLRETPNRDRNAQLCSRLGCSGRLNTVKGAQIEKAKSSRPAFHST--SSGKEIIGSSSRSCIAVGNTRKSITEPCKKLSSNLETDSSETSSVQDDPEVSELAPPPGKIQRGLHPEPKNAESSVVTLMEVGSSDVASNTRSRKSFNQRSGLRNQDSLVGSNVS-SGSKNTSQATRASTTRNGLRNLRCNSISDVVPSSCSSSDSSLNRRETIKKRISEGESSSAAKGKKMNGS--SSAGQNSNSSHGISISDSRRARNMPSNKDNGAASVRTRR-----TVTGHLRGRLSNQGSGNNLSANGSPVVGPQTSQPEMSINLNSPSSLQQLSHEAPLIRPNSYSRPGSSSGNLHS-IMRAGAADVGFSRSLMNQDGLRRYNMDGIAEVLLALERIEQ-DEELSFEQILVLETNLFLNGLNFYDQHRDMRLDIDNMSYEELLALEERMGTVSTALPEEALSDCLKKSTYQFTPLEESSIECDGKKDDVKCSICQKHLWASLVVEEYVAGDEVGRLHCEHSFHVNCVNQWLRLKNWCPICKTAAAP 560
| Match Name | Stats | Description |
|---|---|---|
| A0A5J5A8R1 | E-Value: 3.242e-152, PID: 51.36 | RING-type domain-containing protein {ECO:0000259|P... [more] |
| A0A5B7A9A8 | E-Value: 1.265e-144, PID: 50.45 | (Putative E3 ubiquitin-protein ligase RLIM {ECO:00... [more] |
| A0A5J4ZVH6 | E-Value: 2.368e-140, PID: 49.19 | RING-type domain-containing protein {ECO:0000259|P... [more] |
| A0A7J7GIU6 | E-Value: 3.217e-139, PID: 49.08 | RING-type domain-containing protein {ECO:0000259|P... [more] |
| A0A2N9HE69 | E-Value: 1.241e-131, PID: 46.24 | RING-type domain-containing protein {ECO:0000259|P... [more] |
| A0A438K8N6 | E-Value: 7.072e-131, PID: 47.40 | (Putative E3 ubiquitin-protein ligase HIP1 {ECO:00... [more] |
| F6H3A3 | E-Value: 7.072e-131, PID: 47.40 | RING-type domain-containing protein {ECO:0000259|P... [more] |
| A0A251RDL9 | E-Value: 2.329e-130, PID: 45.21 | RING-type domain-containing protein {ECO:0000259|P... [more] |
| A0A5E4EM09 | E-Value: 6.492e-128, PID: 44.75 | (Full=PREDICTED: E3 {ECO:0000313|EMBL:VVA14948.1})[more] |
| A0A4Y1QUA5 | E-Value: 6.593e-125, PID: 44.03 | (RING/U-box superfamily protein {ECO:0000313|EMBL:... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |