Resource Type:
Polypeptide
Name:
XM_017370826.1
Identifier:
XM_017370826.1-protein
Sequence:
MAPRGLDDEREGEELDTLNREHLFGVPLIEPHHYRTRFPGAVRLKAYIFD
GLGNYYNKEWDLQEGSGQEFCWYHVELPKGNQKLSQSAQYLIDALCPPLK
LQDILSLVSTGPFCGHVDGALVFRVNSPGPASSKFTFRIAARVTENSVIT
VSLGRVPRLGFSPVGQSLLSEVPRVESPSGEHKDRSGTVIEEHVLDFLLR
MNHSEEADNPVPKSVSNLVVHIIDTHVDHLQDVVTKFEMDLDSVELDLDR
GGFALKKQMLDDRRFPKMHLDLQRLLQVLAHGEQVFPRVKEKCSLKVWFA
SEDINSLEELTGRFKRLKENVGFIANRVTAVQAGLDSWQAEQINRKLYYL
SFLSIIFLPLSVITGVFGMNVGGVPWTGQKDPKLKNGFLNVMLLCVATLV
LVLLCFLFSALYTRMDAWRRRKDLTRSLSINRRFSKKSERAGYLRI
Sequence Length:
446
Sequence Checksum:
13cb138d3373facfeb5da16757d69830
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017370826.1, derives from mRNA, XM_017370826.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017370826.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017370826.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6Q5N3 ((Zinc transport protein like {ECO:0000313|EMBL:PSS02583.1}))
HSP 1 Score: 725.702 bits (1872), Expect = 0.000e+0
Identity = 354/449 (78.84%), Postives = 395/449 (87.97%), Query Frame = 0
Match: A0A2R6Q5N3 ((Zinc transport protein like {ECO:0000313|EMBL:PSS02583.1}))
HSP 1 Score: 725.702 bits (1872), Expect = 0.000e+0
Identity = 354/449 (78.84%), Postives = 395/449 (87.97%), Query Frame = 0
Query: 6 LDDEREGEELDTLNREHLFGVPLIEPHHYRTRFPGAVRLKAYIFDGLGNYYNKEWDLQEGSGQEFCWYHVELPKGNQKLSQSAQYLIDALCPPLKLQDILSLVSTGPFCGHVDGALVFRVNSPGPASSKFTFRIAARVTENSVITVSLGRVPRLGFSPVGQSLLSEVPRVESPS---GEHKDRSGTVIEEHVLDFLLRMNHSEEADNPVPKSVSNLVVHIIDTHVDHLQDVVTKFEMDLDSVELDLDRGGFALKKQMLDDRRFPKMHLDLQRLLQVLAHGEQVFPRVKEKCSLKVWFASEDINSLEELTGRFKRLKENVGFIANRVTAVQAGLDSWQAEQINRKLYYLSFLSIIFLPLSVITGVFGMNVGGVPWTGQKDPKLKNGFLNVMLLCVATLVLVLLCFLFSALYTRMDAWRRRKDLTRSLSINRR-FSKKS----ERAGYLRI 446
+D E +GEE++ REH +PL E YRT FPGAVR +AYIFDG GNYYNKEWDL EG +EFCWYHVELPKGNQ+LSQSAQYLID LCPPLKLQDILSLVS GPFCGHVDGALVFRVNSPGPAS KFTFRIAARVTENSVITVSLGRVPRLGFSP+GQSLLSEVP VESP+ GE K++ G VI EHVL+FLL MNHSEEADNPVPKSVSNLVVHIIDTHVDH+QD+VTK E++LD+VE +LDRGGFALKKQMLDDRRFPKMHLDLQRLLQV+AHGEQVFPRVKEKC+ K WFA+ED++SLEEL GR +RLKENVGFIANRVTA+QAGLDSWQAEQINRKLYYLSFLSIIFLPLS+ITGVFGMNVGGVPWTGQ+DPKLKNGF NVMLLCV L +VLLCF+ A YTR+ AW+R++ L R+ S+NR+ F +++ ER GYLR+
Sbjct: 10 IDGEGDGEEME---REH---IPLKERRLYRTHFPGAVRQRAYIFDGEGNYYNKEWDLVEGRDKEFCWYHVELPKGNQRLSQSAQYLIDVLCPPLKLQDILSLVSNGPFCGHVDGALVFRVNSPGPASGKFTFRIAARVTENSVITVSLGRVPRLGFSPMGQSLLSEVPSVESPNHVRGEQKEKDGIVIREHVLEFLLTMNHSEEADNPVPKSVSNLVVHIIDTHVDHIQDIVTKLEIELDAVEFELDRGGFALKKQMLDDRRFPKMHLDLQRLLQVIAHGEQVFPRVKEKCASKNWFANEDVSSLEELIGRLRRLKENVGFIANRVTAIQAGLDSWQAEQINRKLYYLSFLSIIFLPLSIITGVFGMNVGGVPWTGQRDPKLKNGFRNVMLLCVVMLFVVLLCFIVPAFYTRITAWQRKRALRRNWSLNRKSFLRRTLGGEERGGYLRL 452
BLAST of XM_017370826.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0EU18 ((Magnesium transporter CorA-like family protein {ECO:0000313|EMBL:GFY89459.1}))
HSP 1 Score: 725.702 bits (1872), Expect = 0.000e+0
Identity = 354/449 (78.84%), Postives = 395/449 (87.97%), Query Frame = 0
Match: A0A7J0EU18 ((Magnesium transporter CorA-like family protein {ECO:0000313|EMBL:GFY89459.1}))
HSP 1 Score: 725.702 bits (1872), Expect = 0.000e+0
Identity = 354/449 (78.84%), Postives = 395/449 (87.97%), Query Frame = 0
Query: 6 LDDEREGEELDTLNREHLFGVPLIEPHHYRTRFPGAVRLKAYIFDGLGNYYNKEWDLQEGSGQEFCWYHVELPKGNQKLSQSAQYLIDALCPPLKLQDILSLVSTGPFCGHVDGALVFRVNSPGPASSKFTFRIAARVTENSVITVSLGRVPRLGFSPVGQSLLSEVPRVESPS---GEHKDRSGTVIEEHVLDFLLRMNHSEEADNPVPKSVSNLVVHIIDTHVDHLQDVVTKFEMDLDSVELDLDRGGFALKKQMLDDRRFPKMHLDLQRLLQVLAHGEQVFPRVKEKCSLKVWFASEDINSLEELTGRFKRLKENVGFIANRVTAVQAGLDSWQAEQINRKLYYLSFLSIIFLPLSVITGVFGMNVGGVPWTGQKDPKLKNGFLNVMLLCVATLVLVLLCFLFSALYTRMDAWRRRKDLTRSLSINRR-FSKKS----ERAGYLRI 446
+D E +GEE++ REH +PL E YRT FPGAVR +AYIFDG GNYYNKEWDL EG +EFCWYHVELPKGNQ+LSQSAQYLID LCPPLKLQDILSLVS GPFCGHVDGALVFRVNSPGPAS KFTFRIAARVTENSVITVSLGRVPRLGFSP+GQSLLSEVP VESP+ GE K++ G VI EHVL+FLL MNHSEEADNPVPKSVSNLVVHIIDTHVDH+QD+VTK E++LD+VE +LDRGGF LKKQMLDDRRFPKMHLDLQRLLQV+AHGEQVFPRVKEKC+ K WFA+ED++SLEEL GR +RLKENVGFIANRVTA+QAGLDSWQAEQINRKLYYLSFLSIIFLPLS+ITGVFGMNVGGVPWTGQ+DPKLKNGF NVMLLCVA L +VLLCF+ A YTR+ AW+R++ L R+ S+NR+ F +++ ER GYLR+
Sbjct: 10 IDGEGDGEEME---REH---IPLKERRLYRTHFPGAVRQRAYIFDGEGNYYNKEWDLVEGRDKEFCWYHVELPKGNQRLSQSAQYLIDVLCPPLKLQDILSLVSNGPFCGHVDGALVFRVNSPGPASGKFTFRIAARVTENSVITVSLGRVPRLGFSPMGQSLLSEVPSVESPNHVRGEQKEKDGIVIREHVLEFLLTMNHSEEADNPVPKSVSNLVVHIIDTHVDHVQDIVTKLEIELDAVEFELDRGGFTLKKQMLDDRRFPKMHLDLQRLLQVIAHGEQVFPRVKEKCASKNWFANEDVSSLEELIGRLRRLKENVGFIANRVTAIQAGLDSWQAEQINRKLYYLSFLSIIFLPLSIITGVFGMNVGGVPWTGQRDPKLKNGFRNVMLLCVAMLFVVLLCFIVPAFYTRITAWQRKRALRRNWSLNRKSFLRRTLGGEERGGYLRL 452
BLAST of XM_017370826.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251MUM4 ((Uncharacterized protein {ECO:0000313|EMBL:ONH90798.1}))
HSP 1 Score: 724.161 bits (1868), Expect = 0.000e+0
Identity = 357/449 (79.51%), Postives = 387/449 (86.19%), Query Frame = 0
Match: A0A251MUM4 ((Uncharacterized protein {ECO:0000313|EMBL:ONH90798.1}))
HSP 1 Score: 724.161 bits (1868), Expect = 0.000e+0
Identity = 357/449 (79.51%), Postives = 387/449 (86.19%), Query Frame = 0
Query: 8 DEREGEELDTLNREHLFGVPLIEPHHYRTRFPGAVRLKAYIFDGLGNYYNKEWDLQEGSGQEFCWYHVELPKGNQKLSQSAQYLIDALCPPLKLQDILSLVSTGPFCGHVDGALVFRVNSPGPASSKFTFRIAARVTENSVITVSLGRVPRLGFSPVGQSLLSEVPRVESPS---GEHKDRSGTVIEEHVLDFLLRMNHSEEADNPVPKSVSNLVVHIIDTHVDHLQDVVTKFEMDLDSVELDLDRGGFALKKQMLDDRRFPKMHLDLQRLLQVLAHGEQVFPRVKEKCSLKVWFASEDINSLEELTGRFKRLKENVGFIANRVTAVQAGLDSWQAEQINRKLYYLSFLSIIFLPLSVITGVFGMNVGGVPWTGQKDPKLKNGFLNVMLLCVATLVLVLLCFLFSALYTRMDAWRRRKDLTRSLSINRR-FSKKS------ERAGYLRI 446
+ RE EE+D RE PL EPH YR +F G VR KAYIFDG G +YNKEWDL EG G EFCWYHVELPKGNQKLSQSAQYLI LCPPLKLQDILSLVS GPFCGHVDGALVFRVNSPGP SS FTFRIAAR+TEN+VITVSLGRVPRLGFSPVGQSLLSE+P VESPS GEHK+RSG VI EHVL+FLL MNHSEEADNPVPKSVSNLVVHI+DTHVDHLQDVVTK E++LDSVEL LD+GGFALKKQMLDDRRFPK+HLDLQRLLQV+AHGEQVFPRVKEKCS K WF+SEDI SLEEL GR +RLK+NVGFIANRVTA+QAGLDSWQAEQINRKLYYLSFLSIIFLPLS+ITGVFGMNVGGVPWTGQKDP LKNGF NVMLLCVA L+L LLCF F +LYTR+ W R + + RS S+NR+ F +++ ER GYLRI
Sbjct: 10 NNREAEEMD---REASAEAPLREPHLYRNQFGGMVRKKAYIFDGFGKFYNKEWDLTEGRGNEFCWYHVELPKGNQKLSQSAQYLIGVLCPPLKLQDILSLVSNGPFCGHVDGALVFRVNSPGPPSSDFTFRIAARITENAVITVSLGRVPRLGFSPVGQSLLSEIPSVESPSYHRGEHKERSGIVIGEHVLEFLLTMNHSEEADNPVPKSVSNLVVHIVDTHVDHLQDVVTKLEIELDSVELQLDKGGFALKKQMLDDRRFPKIHLDLQRLLQVIAHGEQVFPRVKEKCSSKHWFSSEDIISLEELIGRLRRLKDNVGFIANRVTAIQAGLDSWQAEQINRKLYYLSFLSIIFLPLSIITGVFGMNVGGVPWTGQKDPTLKNGFRNVMLLCVAMLLLALLCFSFPSLYTRIATWHRTRAMKRSWSLNRKSFLRRTHGIGVQERRGYLRI 455
BLAST of XM_017370826.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5E4F4F6 ((Full=PREDICTED: zinc {ECO:0000313|EMBL:VVA21979.1}))
HSP 1 Score: 721.079 bits (1860), Expect = 0.000e+0
Identity = 356/449 (79.29%), Postives = 386/449 (85.97%), Query Frame = 0
Match: A0A5E4F4F6 ((Full=PREDICTED: zinc {ECO:0000313|EMBL:VVA21979.1}))
HSP 1 Score: 721.079 bits (1860), Expect = 0.000e+0
Identity = 356/449 (79.29%), Postives = 386/449 (85.97%), Query Frame = 0
Query: 8 DEREGEELDTLNREHLFGVPLIEPHHYRTRFPGAVRLKAYIFDGLGNYYNKEWDLQEGSGQEFCWYHVELPKGNQKLSQSAQYLIDALCPPLKLQDILSLVSTGPFCGHVDGALVFRVNSPGPASSKFTFRIAARVTENSVITVSLGRVPRLGFSPVGQSLLSEVPRVESPS---GEHKDRSGTVIEEHVLDFLLRMNHSEEADNPVPKSVSNLVVHIIDTHVDHLQDVVTKFEMDLDSVELDLDRGGFALKKQMLDDRRFPKMHLDLQRLLQVLAHGEQVFPRVKEKCSLKVWFASEDINSLEELTGRFKRLKENVGFIANRVTAVQAGLDSWQAEQINRKLYYLSFLSIIFLPLSVITGVFGMNVGGVPWTGQKDPKLKNGFLNVMLLCVATLVLVLLCFLFSALYTRMDAWRRRKDLTRSLSINRR-FSKKS------ERAGYLRI 446
+ RE EE+D RE PL EPH YR +F G VR KAYIFDG G +YNKEWDL EG G EFCWYHVELPKGNQKLSQSAQYLI LCPPLKLQDILSLVS GPFCGHVDGALVFRVNSPGP SS FTFRIAAR+TEN+VITVSLGRVPRLGFSPVGQSLLSE+P VESPS GE K+RSG VI EHVL+FLL MNHSEEADNPVPKSVSNLVVHI+DTHVDHLQDVVTK E++LDSVEL LD+GGFALKKQMLDDRRFPK+HLDLQRLLQV+AHGEQVFPRVKEKCS K WF+SEDI SLEEL GR +RLK+NVGFIANRVTA+QAGLDSWQAEQINRKLYYLSFLSIIFLPLS+ITGVFGMNVGGVPWTGQKDP LKNGF NVMLLCVA L+L LLCF F +LYTR+ W R + + RS S+NR+ F +++ ER GYLRI
Sbjct: 10 NNREAEEMD---REASAEAPLREPHIYRNQFGGMVRKKAYIFDGFGKFYNKEWDLTEGRGNEFCWYHVELPKGNQKLSQSAQYLIGVLCPPLKLQDILSLVSNGPFCGHVDGALVFRVNSPGPPSSDFTFRIAARITENAVITVSLGRVPRLGFSPVGQSLLSEIPSVESPSYHRGERKERSGIVIGEHVLEFLLTMNHSEEADNPVPKSVSNLVVHIVDTHVDHLQDVVTKLEIELDSVELQLDKGGFALKKQMLDDRRFPKIHLDLQRLLQVIAHGEQVFPRVKEKCSSKHWFSSEDIISLEELIGRLRRLKDNVGFIANRVTAIQAGLDSWQAEQINRKLYYLSFLSIIFLPLSIITGVFGMNVGGVPWTGQKDPTLKNGFRNVMLLCVAMLLLALLCFSFPSLYTRIATWHRTRAMKRSWSLNRKSFLRRTHGIGVQERRGYLRI 455
BLAST of XM_017370826.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6AFN0 ((uncharacterized protein LOC111309058 {ECO:0000313|RefSeq:XP_022763613.1}))
HSP 1 Score: 720.309 bits (1858), Expect = 0.000e+0
Identity = 353/441 (80.05%), Postives = 390/441 (88.44%), Query Frame = 0
Match: A0A6P6AFN0 ((uncharacterized protein LOC111309058 {ECO:0000313|RefSeq:XP_022763613.1}))
HSP 1 Score: 720.309 bits (1858), Expect = 0.000e+0
Identity = 353/441 (80.05%), Postives = 390/441 (88.44%), Query Frame = 0
Query: 14 ELDTLNREHLFGVPLIEPHHYRTRFPGAVRLKAYIFDGLGNYYNKEWDLQEGSGQEFCWYHVELPKGNQKLSQSAQYLIDALCPPLKLQDILSLVSTGPFCGHVDGALVFRVNSPGPASSKFTFRIAARVTENSVITVSLGRVPRLGFSPVGQSLLSEVPRVESPS---GEHKDRSGTVIEEHVLDFLLRMNHSEEADNPVPKSVSNLVVHIIDTHVDHLQDVVTKFEMDLDSVELDLDRGGFALKKQMLDDRRFPKMHLDLQRLLQVLAHGEQVFPRVKEKCSLKVWFASEDINSLEELTGRFKRLKENVGFIANRVTAVQAGLDSWQAEQINRKLYYLSFLSIIFLPLSVITGVFGMNVGGVPWTGQKDPKLKNGFLNVMLLCVATLVLVLLCFLFSALYTRMDAWRRRKDLTRSLSINRR-FSKKS----ERAGYLRI 446
+++ L R + +P+ E H +RT FPG V+ KAYIFDGLGNYYNKEWDL EG G+EFCWYHVELPKG QKLSQSAQYLID LCPPLKLQ ILSLVS GPFCGHVDGALVFRVNSPGP SS FTFR+AARVTE+SVITVSLGRVPRLGFSPVGQSLLSE+P VESPS GE K+ SG VI+EHVL+FLL MNHSEEADNPVPKSVSNLVVHI+DTHVDHLQDVVTK EM+LDSVEL+LDRGGFALKK+MLDDRRFPKMHL+LQRLLQV+AHGEQVFPRVKEKCS K WFASEDINSLEEL GR +RLKENVGF+ANRVTA+QAGLDSWQ+EQINRKLYYLSFLSIIFLPLSVITGVFGMNVGGVPWT QKDP LK+GF NVM++CVA L+LVLLCF+F +LYTR+ AW RR+ L +S S NRR F K++ ER G+LRI
Sbjct: 13 DMEELVRVYSGNIPIGENHLHRTHFPGMVKQKAYIFDGLGNYYNKEWDLAEGGGKEFCWYHVELPKGKQKLSQSAQYLIDVLCPPLKLQGILSLVSNGPFCGHVDGALVFRVNSPGPPSSNFTFRLAARVTESSVITVSLGRVPRLGFSPVGQSLLSEIPSVESPSSYRGERKEGSGIVIKEHVLEFLLTMNHSEEADNPVPKSVSNLVVHILDTHVDHLQDVVTKLEMELDSVELELDRGGFALKKEMLDDRRFPKMHLNLQRLLQVIAHGEQVFPRVKEKCSSKHWFASEDINSLEELIGRLRRLKENVGFLANRVTAIQAGLDSWQSEQINRKLYYLSFLSIIFLPLSVITGVFGMNVGGVPWTVQKDPALKDGFRNVMVICVAMLLLVLLCFIFPSLYTRLTAWHRRRSLRKSWSHNRRSFLKRTIGIQERGGFLRI 453
BLAST of XM_017370826.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M5VMY1 ((Uncharacterized protein {ECO:0000313|EMBL:EMJ02241.1}))
HSP 1 Score: 718.383 bits (1853), Expect = 0.000e+0
Identity = 352/439 (80.18%), Postives = 382/439 (87.02%), Query Frame = 0
Match: M5VMY1 ((Uncharacterized protein {ECO:0000313|EMBL:EMJ02241.1}))
HSP 1 Score: 718.383 bits (1853), Expect = 0.000e+0
Identity = 352/439 (80.18%), Postives = 382/439 (87.02%), Query Frame = 0
Query: 18 LNREHLFGVPLIEPHHYRTRFPGAVRLKAYIFDGLGNYYNKEWDLQEGSGQEFCWYHVELPKGNQKLSQSAQYLIDALCPPLKLQDILSLVSTGPFCGHVDGALVFRVNSPGPASSKFTFRIAARVTENSVITVSLGRVPRLGFSPVGQSLLSEVPRVESPS---GEHKDRSGTVIEEHVLDFLLRMNHSEEADNPVPKSVSNLVVHIIDTHVDHLQDVVTKFEMDLDSVELDLDRGGFALKKQMLDDRRFPKMHLDLQRLLQVLAHGEQVFPRVKEKCSLKVWFASEDINSLEELTGRFKRLKENVGFIANRVTAVQAGLDSWQAEQINRKLYYLSFLSIIFLPLSVITGVFGMNVGGVPWTGQKDPKLKNGFLNVMLLCVATLVLVLLCFLFSALYTRMDAWRRRKDLTRSLSINRR-FSKKS------ERAGYLRI 446
++RE PL EPH YR +F G VR KAYIFDG G +YNKEWDL EG G EFCWYHVELPKGNQKLSQSAQYLI LCPPLKLQDILSLVS GPFCGHVDGALVFRVNSPGP SS FTFRIAAR+TEN+VITVSLGRVPRLGFSPVGQSLLSE+P VESPS GEHK+RSG VI EHVL+FLL MNHSEEADNPVPKSVSNLVVHI+DTHVDHLQDVVTK E++LDSVEL LD+GGFALKKQMLDDRRFPK+HLDLQRLLQV+AHGEQVFPRVKEKCS K WF+SEDI SLEEL GR +RLK+NVGFIANRVTA+QAGLDSWQAEQINRKLYYLSFLSIIFLPLS+ITGVFGMNVGGVPWTGQKDP LKNGF NVMLLCVA L+L LLCF F +LYTR+ W R + + RS S+NR+ F +++ ER GYLRI
Sbjct: 1 MDREASAEAPLREPHLYRNQFGGMVRKKAYIFDGFGKFYNKEWDLTEGRGNEFCWYHVELPKGNQKLSQSAQYLIGVLCPPLKLQDILSLVSNGPFCGHVDGALVFRVNSPGPPSSDFTFRIAARITENAVITVSLGRVPRLGFSPVGQSLLSEIPSVESPSYHRGEHKERSGIVIGEHVLEFLLTMNHSEEADNPVPKSVSNLVVHIVDTHVDHLQDVVTKLEIELDSVELQLDKGGFALKKQMLDDRRFPKIHLDLQRLLQVIAHGEQVFPRVKEKCSSKHWFSSEDIISLEELIGRLRRLKDNVGFIANRVTAIQAGLDSWQAEQINRKLYYLSFLSIIFLPLSIITGVFGMNVGGVPWTGQKDPTLKNGFRNVMLLCVAMLLLALLCFSFPSLYTRIATWHRTRAMKRSWSLNRKSFLRRTHGIGVQERRGYLRI 439
BLAST of XM_017370826.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A200QXM7 ((Mg2+ transporter protein {ECO:0000313|EMBL:OVA15233.1}))
HSP 1 Score: 717.613 bits (1851), Expect = 0.000e+0
Identity = 345/449 (76.84%), Postives = 388/449 (86.41%), Query Frame = 0
Match: A0A200QXM7 ((Mg2+ transporter protein {ECO:0000313|EMBL:OVA15233.1}))
HSP 1 Score: 717.613 bits (1851), Expect = 0.000e+0
Identity = 345/449 (76.84%), Postives = 388/449 (86.41%), Query Frame = 0
Query: 6 LDDEREGEELDTLNREHLFGVPLIEPHHYRTRFPGAVRLKAYIFDGLGNYYNKEWDLQEGSGQEFCWYHVELPKGNQKLSQSAQYLIDALCPPLKLQDILSLVSTGPFCGHVDGALVFRVNSPGPASSKFTFRIAARVTENSVITVSLGRVPRLGFSPVGQSLLSEVPRVESPS---GEHKDRSGTVIEEHVLDFLLRMNHSEEADNPVPKSVSNLVVHIIDTHVDHLQDVVTKFEMDLDSVELDLDRGGFALKKQMLDDRRFPKMHLDLQRLLQVLAHGEQVFPRVKEKCSLKVWFASEDINSLEELTGRFKRLKENVGFIANRVTAVQAGLDSWQAEQINRKLYYLSFLSIIFLPLSVITGVFGMNVGGVPWTGQKDPKLKNGFLNVMLLCVATLVLVLLCFLFSALYTRMDAWRRRKDLTRSLSINRR-FSKKS----ERAGYLRI 446
L E + E++ L+RE PL E YRTRFPGAVR KAY FDG+G YYNKEWDL EGSG+EFCWYHVELP+GNQKLS SAQYLIDALCPPLKLQDILSLV+ GPFCGHVDGALVFRVNSPGPASS FT RIAARVTENS+ITVSLGRVPRLGFSP GQSLLSE+P VESP+ E K+ SG VI EHVL+FLL MNHSEEADNPVP+++SNLVVH++DTH+DHLQD+VTK EM+LDSVE+++D+GGFALKKQMLDDRRFPKMHL++QRLLQV+AHGEQVFPRVKEKC+ K WF SED+ SLEEL GR +RLKENVGFIANRVTA+QAGLDSWQAEQINRKLYYLSFLSIIFLPLS+ITGVFGMNVGGVPWTGQKDP +K+GF NVM LCVATL LVLLCF F LY + AWRRR+ L RS S+NR+ F +++ ER GYLR+
Sbjct: 3 LIQEDQNGEVEVLDREPSTEFPLKETRLYRTRFPGAVRQKAYRFDGIGGYYNKEWDLTEGSGREFCWYHVELPRGNQKLSLSAQYLIDALCPPLKLQDILSLVTNGPFCGHVDGALVFRVNSPGPASSNFTLRIAARVTENSLITVSLGRVPRLGFSPTGQSLLSEIPSVESPTVLKDEEKEESGIVIREHVLEFLLTMNHSEEADNPVPRTISNLVVHVVDTHMDHLQDIVTKLEMELDSVEIEMDKGGFALKKQMLDDRRFPKMHLNIQRLLQVIAHGEQVFPRVKEKCATKSWFGSEDVISLEELIGRLRRLKENVGFIANRVTAIQAGLDSWQAEQINRKLYYLSFLSIIFLPLSIITGVFGMNVGGVPWTGQKDPTIKDGFRNVMFLCVATLFLVLLCFTFPTLYVHISAWRRRRALKRSWSLNRKSFLRRTIGGGERGGYLRL 451
BLAST of XM_017370826.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AG65 ((Putative Magnesium transporter CorA-like family protein isoform 1 {ECO:0000313|EMBL:MPA54826.1}) (3.2.1.21 {ECO:0000313|EMBL:MPA54826.1}))
HSP 1 Score: 716.842 bits (1849), Expect = 0.000e+0
Identity = 359/449 (79.96%), Postives = 390/449 (86.86%), Query Frame = 0
Match: A0A5B7AG65 ((Putative Magnesium transporter CorA-like family protein isoform 1 {ECO:0000313|EMBL:MPA54826.1}) (3.2.1.21 {ECO:0000313|EMBL:MPA54826.1}))
HSP 1 Score: 716.842 bits (1849), Expect = 0.000e+0
Identity = 359/449 (79.96%), Postives = 390/449 (86.86%), Query Frame = 0
Query: 6 LDDEREGEELDTLNREHLFGVPLIEPHHYRTRFPGAVRLKAYIFDGLGNYYNKEWDLQEGSGQEFCWYHVELPKGNQKLSQSAQYLIDALCPPLKLQDILSLVSTGPFCGHVDGALVFRVNSPGPASSKFTFRIAARVTENSVITVSLGRVPRLGFSPVGQSLLSEVPRVESPS---GEHKDRSGTVIEEHVLDFLLRMNHSEEADNPVPKSVSNLVVHIIDTHVDHLQDVVTKFEMDLDSVELDLDRGGFALKKQMLDDRRFPKMHLDLQRLLQVLAHGEQVFPRVKEKCSLKVWFASEDINSLEELTGRFKRLKENVGFIANRVTAVQAGLDSWQAEQINRKLYYLSFLSIIFLPLSVITGVFGMNVGGVPWTGQKDPKLKNGFLNVMLLCVATLVLVLLCFLFSALYTRMDAWRRRKDLTRSLSINRR-FSKKS----ERAGYLRI 446
L+ EGEE++ RE PL E YRT FPGAVR KAYIFDG GN+YNKEWDL EG +EFCWYHVELPKGNQKLSQSAQYLID LCPPLKLQDILSLVS GPFCGHVDGALVFRVNSPGPA S FTF+IAARVTENSVITVSLGRVPRLGFSP+GQSLLSE+P VESP+ GE K+R G VI EHVL+FLL MNHSEEADNPVPKSVSNL+VHI+DTHVDHLQD+VTK E++LDSVE ++DRGGFALKKQMLDDRRFPKMHLDLQRLLQV+AHGEQVFPRVKEKCS K WFASEDINSLEEL GR +RLKENVGFIANR+TA+QAGLDSWQAEQINRKLYYLSFLSIIFLPLS+ITGVFGMNVGGVPWTGQ DPK K GF NVMLLCVA L+LVLLCF F ALY+R+ AWRRR+ + RS S NR+ F K++ ER GYLRI
Sbjct: 8 LNINGEGEEME---REPSSNTPLQETSLYRTHFPGAVRQKAYIFDGEGNFYNKEWDLVEGRDKEFCWYHVELPKGNQKLSQSAQYLIDVLCPPLKLQDILSLVSNGPFCGHVDGALVFRVNSPGPAYSNFTFKIAARVTENSVITVSLGRVPRLGFSPMGQSLLSEIPSVESPNCIRGEQKERGGIVIREHVLEFLLTMNHSEEADNPVPKSVSNLLVHIVDTHVDHLQDIVTKLEIELDSVEFEVDRGGFALKKQMLDDRRFPKMHLDLQRLLQVIAHGEQVFPRVKEKCSSKNWFASEDINSLEELIGRLRRLKENVGFIANRITAIQAGLDSWQAEQINRKLYYLSFLSIIFLPLSIITGVFGMNVGGVPWTGQGDPKSKEGFRNVMLLCVAMLLLVLLCFTFPALYSRVAAWRRRRTMRRSWSFNRKSFLKRTLGGGERGGYLRI 453
BLAST of XM_017370826.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P5F7F9 ((Mg2+ transporter protein, Zinc transport protein {ECO:0000313|EMBL:PON93715.1}))
HSP 1 Score: 715.687 bits (1846), Expect = 0.000e+0
Identity = 349/445 (78.43%), Postives = 388/445 (87.19%), Query Frame = 0
Match: A0A2P5F7F9 ((Mg2+ transporter protein, Zinc transport protein {ECO:0000313|EMBL:PON93715.1}))
HSP 1 Score: 715.687 bits (1846), Expect = 0.000e+0
Identity = 349/445 (78.43%), Postives = 388/445 (87.19%), Query Frame = 0
Query: 12 GEELDTLNREHLFGVPLIEPHHYRTRFPGAVRLKAYIFDGLGNYYNKEWDLQEGSGQEFCWYHVELPKGNQKLSQSAQYLIDALCPPLKLQDILSLVSTGPFCGHVDGALVFRVNSPGPASSKFTFRIAARVTENSVITVSLGRVPRLGFSPVGQSLLSEVPRVESPS---GEHKDRSGTVIEEHVLDFLLRMNHSEEADNPVPKSVSNLVVHIIDTHVDHLQDVVTKFEMDLDSVELDLDRGGFALKKQMLDDRRFPKMHLDLQRLLQVLAHGEQVFPRVKEKCSLKVWFASEDINSLEELTGRFKRLKENVGFIANRVTAVQAGLDSWQAEQINRKLYYLSFLSIIFLPLSVITGVFGMNVGGVPWTGQKDPKLKNGFLNVMLLCVATLVLVLLCFLFSALYTRMDAWRRRKDLTRSLSINRR-FSKKS------ERAGYLRI 446
GEE + ++RE PL EP+ YRT F G+VR +AYIFDG GN+YNKEWDL EG G+EFCWYHVELPKGNQKLSQSAQYLI LCPPLKLQDILSL+S GPFCGHV+GALVFRVNSPGPASS FTFRIAARVTENSVITVSLGRVPRLGFS +GQSLLSE+P VESP+ G+ K+ SGTVI EHVL+FLL MNHSEEADNPVPKSVSNLVVHIIDTHVD LQD+VTK EM+LD+VEL+LD+GGFALKKQMLDDRRFPKMHL+LQRLLQV+AHGEQVFPRVKEK S K WFA+EDI +LEEL GR +RLKENVGFIANRVTA+QAGLDSWQAEQINRKLYYLSFLSIIFLPLS+ITGVFGMNVGGVPWTGQKDPK K+GF NVM LCVA L LVLLCF+F LY+R+ AWRR + L RS S+NR+ F +++ ER GYLR+
Sbjct: 11 GEEAEEMDRETSADTPLREPYLYRTHFSGSVRQRAYIFDGSGNFYNKEWDLAEGRGEEFCWYHVELPKGNQKLSQSAQYLIGVLCPPLKLQDILSLISNGPFCGHVNGALVFRVNSPGPASSDFTFRIAARVTENSVITVSLGRVPRLGFSQMGQSLLSEIPSVESPTYHRGQQKEGSGTVIREHVLEFLLTMNHSEEADNPVPKSVSNLVVHIIDTHVDQLQDMVTKLEMELDAVELELDKGGFALKKQMLDDRRFPKMHLNLQRLLQVIAHGEQVFPRVKEKSSSKRWFANEDIIALEELIGRLRRLKENVGFIANRVTALQAGLDSWQAEQINRKLYYLSFLSIIFLPLSIITGVFGMNVGGVPWTGQKDPKQKDGFRNVMFLCVAMLFLVLLCFIFPFLYSRIAAWRRTRALKRSWSLNRKSFLRRTAGGPSQERGGYLRL 455
BLAST of XM_017370826.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5B5C2 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8536341.1}))
HSP 1 Score: 714.531 bits (1843), Expect = 0.000e+0
Identity = 345/420 (82.14%), Postives = 374/420 (89.05%), Query Frame = 0
Match: A0A5J5B5C2 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8536341.1}))
HSP 1 Score: 714.531 bits (1843), Expect = 0.000e+0
Identity = 345/420 (82.14%), Postives = 374/420 (89.05%), Query Frame = 0
Query: 12 GEELDTLNREHLFGVPLIEPHHYRTRFPGAVRLKAYIFDGLGNYYNKEWDLQEGSGQEFCWYHVELPKGNQKLSQSAQYLIDALCPPLKLQDILSLVSTGPFCGHVDGALVFRVNSPGPASSKFTFRIAARVTENSVITVSLGRVPRLGFSPVGQSLLSEVPRVESPS---GEHKDRSGTVIEEHVLDFLLRMNHSEEADNPVPKSVSNLVVHIIDTHVDHLQDVVTKFEMDLDSVELDLDRGGFALKKQMLDDRRFPKMHLDLQRLLQVLAHGEQVFPRVKEKCSLKVWFASEDINSLEELTGRFKRLKENVGFIANRVTAVQAGLDSWQAEQINRKLYYLSFLSIIFLPLSVITGVFGMNVGGVPWTGQKDPKLKNGFLNVMLLCVATLVLVLLCFLFSALYTRMDAWRRRKDLTRSL 428
GEE+D RE PL E HYRTRFPGAVR +AYIFDGLGNYYNKEWDL EG G+EFCWYHVELPKGNQKLSQSAQYLID LCPPLKLQDILSLVS GPFCGHVDGALVFRVNSPG ASS FTF+IAARVTENSVITVSLGRVPRLGFSP+GQSLLSE+P VESP+ GE K++ G VI EHVL+FLL MNHSEEADNPVPKSVSNL+VHIIDTHVDHLQD+VTK E++LDSVEL+LDRGGFALKKQMLDDRRFPKMHLDLQRLLQV+AHGEQVFPRVKEKCS K WFASEDI+SLEEL GR +RLKENVGFIANRVTA+QAGLDSWQAEQINRKLYYLSFLSI+FLPLS+ITG FGMNVGGVPWTGQ+DPK+K+GF NVMLLCVATL+LVL+CF F ALYTR+ + + L
Sbjct: 13 GEEMD---REPSSATPLKETSHYRTRFPGAVRQRAYIFDGLGNYYNKEWDLVEGRGEEFCWYHVELPKGNQKLSQSAQYLIDVLCPPLKLQDILSLVSNGPFCGHVDGALVFRVNSPGLASSNFTFKIAARVTENSVITVSLGRVPRLGFSPMGQSLLSEIPSVESPNHVRGEQKEKGGFVIREHVLEFLLTMNHSEEADNPVPKSVSNLLVHIIDTHVDHLQDIVTKLEIELDSVELELDRGGFALKKQMLDDRRFPKMHLDLQRLLQVIAHGEQVFPRVKEKCSSKRWFASEDISSLEELIGRLRRLKENVGFIANRVTAIQAGLDSWQAEQINRKLYYLSFLSIVFLPLSIITGAFGMNVGGVPWTGQRDPKIKDGFRNVMLLCVATLLLVLMCFTFPALYTRIACLAEEESYEKKL 429
| Match Name | Stats | Description |
|---|---|---|
| A0A2R6Q5N3 | E-Value: 0.000e+0, PID: 78.84 | (Zinc transport protein like {ECO:0000313|EMBL:PSS... [more] |
| A0A7J0EU18 | E-Value: 0.000e+0, PID: 78.84 | (Magnesium transporter CorA-like family protein {E... [more] |
| A0A251MUM4 | E-Value: 0.000e+0, PID: 79.51 | (Uncharacterized protein {ECO:0000313|EMBL:ONH9079... [more] |
| A0A5E4F4F6 | E-Value: 0.000e+0, PID: 79.29 | (Full=PREDICTED: zinc {ECO:0000313|EMBL:VVA21979.1... [more] |
| A0A6P6AFN0 | E-Value: 0.000e+0, PID: 80.05 | (uncharacterized protein LOC111309058 {ECO:0000313... [more] |
| M5VMY1 | E-Value: 0.000e+0, PID: 80.18 | (Uncharacterized protein {ECO:0000313|EMBL:EMJ0224... [more] |
| A0A200QXM7 | E-Value: 0.000e+0, PID: 76.84 | (Mg2+ transporter protein {ECO:0000313|EMBL:OVA152... [more] |
| A0A5B7AG65 | E-Value: 0.000e+0, PID: 79.96 | (Putative Magnesium transporter CorA-like family p... [more] |
| A0A2P5F7F9 | E-Value: 0.000e+0, PID: 78.43 | (Mg2+ transporter protein, Zinc transport protein ... [more] |
| A0A5J5B5C2 | E-Value: 0.000e+0, PID: 82.14 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8536... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |