Resource Type:
Polypeptide
Name:
XM_017370791.1
Identifier:
XM_017370791.1-protein
Sequence:
MASEAALADHPVVPEQVKEEVHEEANTSEEVEKPKPENLSPAAAMPLPES
EDKIEAQPIETPTVEALGETVEKDIPKTEIVVTPVVPEAEDRVDENRKTE
HAVVVEEKNTVNEEKPIAAVVPTSEETPKYEVLSSLPVVSAESEEKVEVK
PPGTDVQQAIEEVQLSAAEVVPSAEPETVEDKNVEPPVVDEVKIADEPLV
EEKLLSDTPVAKEADIAAKPVVEANIVIEPPVEGKQPQTPVAEEVKIADE
PLVEEKITSDTHNVEEAQIAAEPPVVEENLMTESPQEVKLVETPVIEEVK
IADEPLVEEKTASDTHVEGPEIAAEPPVVEVNLMTESPEEVKLLQTPVIE
EVKIADEPLVEEKNATDTHVEEPEIAAEPPTVEENIMIEPPSGVQLLQTP
VPEEVKIADEPLVEEKITSDTSVVEEPKIASESIVVENNIVTEPPAEVKL
LQTPVVEDVKIADEPLVEEKIASDTHVVEEPEIAAEPPGVEENIVIQPPA
EVKLLQTPAVEVKIADEHIVKEKIANDAHVVEEPEIAAEPPVVEENVVIE
HPAEVKLLQTPVVKEEKIADEPIVEEKIANDTPVVEERELAAEPSVVEEN
IVIEPPAEVKLLQPPVVEEVKINDEPLVEEKSASDSHVVKEEKNAAEPPV
PEENIVIEPPVEVKLLQTPAVEEMKDTMEQLVAEEEVATENPVFEEEKIT
TKDPLLDGKTVTEPSAVEEKIVEIPGVEENNTDNPIVEEVNKTTESPSVI
EEECITVPTLAEEVKNVTEPAVVEEMKQTPVFEEVKNVDDMPDVTEPEAK
KVESYFVTEASELPVQEQKAESVEEKLIEKPKAEGIPESSLEPVDKKEEA
VDFPVKESEPALAKDVGILEPLSIKDDAVESLTDVLEKPQEYVAVETKEC
VHGSADKVEDVKFSKEEEFNGKTPLETTSSVEATLPTKEGQADAEETILG
GEADLVEELPKEKAVTSMKVEKETEAKDVNTDSAQPETKETEEVVKSIST
PAAAENILEAVITSKDAKLVVENEKEDKKSELVSPVETYRNGTVADKTSE
QPDETKQEKPEVKVKEDDTVPTDDTKELDDKLTSQDLPKEVVTIKSTQKQ
SNTILSKVKNTLVKAKKAITGKSSNTKTPPSEPKGEIRV
Sequence Length:
1139
Sequence Checksum:
b93ac6ddcc1026c9671757b0958d0ebe
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017370791.1, derives from mRNA, XM_017370791.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017370791.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017370791.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZLT8 ((Putative neurofilament heavy polypeptide-like {ECO:0000313|EMBL:MPA45457.1}))
HSP 1 Score: 159.073 bits (401), Expect = 2.667e-37
Identity = 140/360 (38.89%), Postives = 192/360 (53.33%), Query Frame = 0
Match: A0A5B6ZLT8 ((Putative neurofilament heavy polypeptide-like {ECO:0000313|EMBL:MPA45457.1}))
HSP 1 Score: 159.073 bits (401), Expect = 2.667e-37
Identity = 140/360 (38.89%), Postives = 192/360 (53.33%), Query Frame = 0
Query: 836 IPESSLEPVDKKEEAVD-FPVKESEPALAKDVGILEPLSIKDDAVESLTDVLEKPQEYVAVET---KEC----------------VHGSADKVEDVKFSKEEEFNGKTPLETTSSVEATLPTKEGQADAEETILG------------------GEADLVEELPKEKAVTSMKVEKETEAKDVNTDS-----------AQPETKETEEVVKSISTPAAAENILEAVITSKDAKLVVENEKEDKKSELVSPVETYRNGTVADKTSEQPDETKQE--KPEVKVKEDDTVPTD-----DTKELDDKLTSQDLPKEVVTIKSTQKQSNTILSKVKNTLVKAKKAITGKSSNTKTPPSEPKGEIRV 1139
+PESS+E ++KKEE VD PVKES + KDV LE S K++ E + +V EKPQE V KEC V S DK+ED + KE + + PL T SS + + E Q + ++ + G G A++VE L E+ V K+E E + KDV T+ QPE + E+V SIST E L+ TS+D +LV EN K+ K E V+ +E+ ++G V + T+ E +E K E ++K ++TV TD K+ DD TSQD PKE V K TQKQSN I++KVK +LVKAKKAI GKS N+K+ PSE KG+++V
Sbjct: 372 VPESSVEAIEKKEEQVDVLPVKESAAVVIKDVENLEAESKKEETPEPVPEVEEKPQEKSEVAEQVEKECAEVKPKENVEVELVKDVETSTDKLEDTELLKEVKTTKEEPLVTESSDQGSSSNAEAQVETKDAVEGPPTDVAEKAGVEDKDKELGTANVVEGLSNEEVVELGKIEMENKTKDVKTEEDIGEKKITEELNQPEANKVEDVSSSISTTEVIEKSLQGENTSRDFELVAENGKDSIKDETVASLESSKDGEVDEVTTTAAKEQVEEPQKSERELKGEETVQTDAPNPESMKDGDDTETSQDPPKEEVAAKPTQKQSNNIIAKVKQSLVKAKKAIIGKSPNSKSVPSETKGDVKV 731
BLAST of XM_017370791.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4DQL1 ((Uncharacterized protein {ECO:0000313|EMBL:THG05381.1}))
HSP 1 Score: 129.413 bits (324), Expect = 4.289e-28
Identity = 157/403 (38.96%), Postives = 218/403 (54.09%), Query Frame = 0
Match: A0A4S4DQL1 ((Uncharacterized protein {ECO:0000313|EMBL:THG05381.1}))
HSP 1 Score: 129.413 bits (324), Expect = 4.289e-28
Identity = 157/403 (38.96%), Postives = 218/403 (54.09%), Query Frame = 0
Query: 777 KQTPVFEEVKNVDDMP-------DVTEPEAKKVESY-FVTEASELPVQEQK-AESVEEKLIEKPKAEGIPESSLEPVDKKEEAVDFPVKESEPALAKDVGILEPLSIKDDAVESLTDVLEKPQEYV-AVET--KECVH---GSADKVEDVK-----FSKEEEFNGKTPLETTSSVEATLPTKEGQADA---EETILG------GEADLVEELPKEKAVTSMKVEKETEAKDVNTDSAQPETKETEEVVKSISTPAAAENILEAVITSKDAKLVVENEKEDKKSELVSPVETYRNGTVADK-----TSEQPDETKQEKPEVKVKEDDTVPTDDTKELDDKLTSQ-------DLPKEVVTIKSTQKQSNTILSKVKNTLVKAKKAITGKSSNTKTPPSEPKGEIR 1138
K+ + E V +VDD P + E E +VE+ V E E QEQ E VE++ E+PK PE +E V+K EEA PVKESE +AKD+ I E K++ ES+ +V +KPQE AVE KEC + KVE VK K E+ + P+ T SS + T E Q D E+ I+G ++VE + K++ V KVE E+E K+V T+ E KE E + + + P + +E V+TS+D +LV EN KE K E V+ VET +NG V + T ++P E + KPE +VK ++ V T +T K TS+ D PKE V+ K T KQSN +++KVK +LVKAKKAI GKS N+KT SE KG+++
Sbjct: 236 KKEEIQEPVPDVDDKPQEQSEVSEQVEKECAEVETKESVIEKEEETSQEQPPKEVVEKQAEEEPKIADTPEPPVEVVEKTEEAEVLPVKESETVVAKDIEISELEPKKEEIRESMPEVEDKPQEQSEAVEQVEKECAEVEPKESVKVEIVKEEETLADKIEQITKEEPIVTESSDQITSTNVEAQVDTNVVEKEIVGEKEKELNGTEVVEGVSKQEVVEPGKVELESEGKNVETE----ENKEKEGMTEELDKPKV--DKVEDVVTSRDIELVAENGKESIKDETVASVETEKNGEVEGEEVTPTTVKEPVEEPK-KPESEVKGEENVQTSETNLEKVKETSEIAKPDVPDPPKEEVSTKPTSKQSNNLIAKVKQSLVKAKKAIIGKSPNSKTVSSETKGDVK 631
BLAST of XM_017370791.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5B288 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8536684.1}))
HSP 1 Score: 122.865 bits (307), Expect = 2.524e-26
Identity = 163/453 (35.98%), Postives = 223/453 (49.23%), Query Frame = 0
HSP 2 Score: 39.2762 bits (90), Expect = 5.192e+0
Identity = 31/76 (40.79%), Postives = 42/76 (55.26%), Query Frame = 0
Match: A0A5J5B288 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8536684.1}))
HSP 1 Score: 122.865 bits (307), Expect = 2.524e-26
Identity = 163/453 (35.98%), Postives = 223/453 (49.23%), Query Frame = 0
Query: 790 DMPDVTEPEAKKVESY-----FVTEASELPVQEQKAESVEEKLIEKPKAEGIPESSLEPVDKKEEAVD-FPVKESEPALAKDVGILEPLSIKD------------DAVESLTDVLEKPQEYVAVE-TKECVHGSADKVE--DVKFSKEEEFNGKTPLE----TTSSVEA---------TLPTKEGQADAEETILGGEADLVEEL---------------------------PKE---KAVTSMKVEKETEAKDVNTDS-----------AQPETKETEEVVKSISTPAAAENILEAVITSKDAKLVVENEKEDKKSELVSPVETYRNGTVADKT-----------SEQPDETKQE-KPE----------VKVKEDDTVPTDD------TKELDDKLTSQDLPKEVVTIKSTQKQSNTILSKVKNTLVKAKKAITGKSSNTKTPPSEPKGEIRV 1139
D V+EP A V+S + + P +E ESVE++ E+PK +P+SS+E V+KKEE V+ PVKESE A+A++V E S K+ D ES + +EK +E V V KE +A +VE +V+ KEE + ++ + SSVEA LP KE + + + EA+ +EL PKE + V K E E EAKDV T+ QPETK+ E+V SIST E LE TS+D +LV EN KE ++E V+ +ET ++G K +E+P E+++E K E VK KE D + D TK++D+K TSQD KE V K TQKQSN I++KVK +LVKAKKAI GKSSN K SE KGE+++
Sbjct: 105 DTCSVSEPAADSVKSQPEEQPAIESVEKQPQEEPAIESVEKQPEEQPKIIDVPKSSVEAVEKKEEQVEVLPVKESEAAVAREVESSEAESKKEEIPETEEQVKIVDVSESSVEAVEKKEEQVEVLPVKESEAVAAKEVESSEVESKKEEILEPEEQVKIVDVSESSVEAIEKKEEQGQVLPVKESEVVVAKEVECSEAESKKELTPEPVPELEEKPQEVDQLIEKNCAEIKPKECVEEGVGLGKTEVEKEAKDVKTEEDIGEKRITEELNQPETKKVEDVCSSISTTEVIEKSLEGENTSRDIELVAENVKEGIEAETVTSLETNKDGEAEGKADEVTTATLKEQAEEPQESERELKGEETLQTGETNLVKEKEADEIAKPDIPNPESTKDVDEK-TSQDPLKEGVAAKPTQKQSNNIMAKVKQSLVKAKKAIIGKSSNPKLLSSETKGEVKI 556
HSP 2 Score: 39.2762 bits (90), Expect = 5.192e+0
Identity = 31/76 (40.79%), Postives = 42/76 (55.26%), Query Frame = 0
Query: 1 MASEAALADHPVVPEQVKEEVHEEANT-----------SEEVEKPKPENLSPAAAMPLPESEDKIEAQPIETPTVE 65
MASE ++DH PE+V+++ +EE T S E EK K E SP+ A PL ESE+K E + +E VE
Sbjct: 1 MASETVVSDHSATPERVEKKANEEVKTIEHESVAPSKESGEEEKCKAEE-SPSPAAPLAESEEKFEDKKVEPQVVE 75
BLAST of XM_017370791.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZNA0 ((Putative neurofilament heavy polypeptide-like {ECO:0000313|EMBL:MPA45455.1}))
HSP 1 Score: 117.472 bits (293), Expect = 2.288e-24
Identity = 139/376 (36.97%), Postives = 185/376 (49.20%), Query Frame = 0
Match: A0A5B6ZNA0 ((Putative neurofilament heavy polypeptide-like {ECO:0000313|EMBL:MPA45455.1}))
HSP 1 Score: 117.472 bits (293), Expect = 2.288e-24
Identity = 139/376 (36.97%), Postives = 185/376 (49.20%), Query Frame = 0
Query: 836 IPESSLEPVDKKEE-AVDFPVKESEPALAKDVGILEPLSIKDDAVESLTDVLEKPQE-----------YVAVETKECVH--------GSADKVEDVKFSKEEEFNGKTPLETTSSVEATLPTKEGQADAEETIL--------GGEADL-----VEELPKEKAVTSMKVEKETEAKDVNTDS-----------AQPETKETEEVVKSISTPAAAENILEAVITSKDAKLVVENEKEDKKSELVSPVETYRNG-----------TVADKTSEQPDETKQE-KPEVKVKEDDT---------------VPT-DDTKELDDKLTSQDLPKEVVTIKSTQKQSNTILSKVKNTLVKAKKAITGKSSNTKTPPSEPKGEIRV 1139
+ ESS+E ++KKEE V PVKESE A+ KDV E S ++ + +V EKPQE VE KE V DKVED + KE + + T SS + T +E Q + +E + E +L VE L KE+ V K E E EAKDV T+ QPET + E+V SIST E LE TS+ +L+ EN KE K E V +ET ++ A + +E+P E+++E K E V+ +T VP + TK+ DD TSQD K V KS QKQSN I++KVK +LVKAKKAI GKS N+K+ PSE KG+++V
Sbjct: 227 VSESSVEAIEKKEEQVVVIPVKESEAAVVKDVENSEAESKTEETPVPVPEVEEKPQEKSEDAELVEKECAEVEPKESVEVEIVKDEATLTDKVEDTELLKEVQTTKEESPVTESSDQVTSTYEEAQVEIKEDRVECPPDVAENKEKELIATNVVEGLSKEEVVELGKTEVENEAKDVKTEEDIGEKRITEELNQPETNKVEDVSSSISTTEVIEKSLEGENTSRGIELIAENGKESIKDETVISLETSKDREAEEKVDEVTTATAKEQAEEPQESEREVKGEESVQTGETNLVKEKEAGETAKPDVPNPESTKDGDDTKTSQDPLKGEVAAKSIQKQSNNIIAKVKQSLVKAKKAIIGKSPNSKSVPSETKGDVKV 602
BLAST of XM_017370791.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZPQ7 ((Putative neurofilament heavy polypeptide-like {ECO:0000313|EMBL:MPA45456.1}))
HSP 1 Score: 117.087 bits (292), Expect = 3.139e-24
Identity = 138/377 (36.60%), Postives = 183/377 (48.54%), Query Frame = 0
Match: A0A5B6ZPQ7 ((Putative neurofilament heavy polypeptide-like {ECO:0000313|EMBL:MPA45456.1}))
HSP 1 Score: 117.087 bits (292), Expect = 3.139e-24
Identity = 138/377 (36.60%), Postives = 183/377 (48.54%), Query Frame = 0
Query: 835 GIPESSLEPVDKKEEAVD-FPVKESEPALAKDVGILEPLSIKDDAVESLTDVLEKPQEYVAVET---KECVH----------------GSADKVEDVKFSKEEEFNGKTPLETTSSVEATLPTKEGQADAEETIL--------GGEADL-----VEELPKEKAVTSMKVEKETEAKDVNTDS-----------AQPETKETEEVVKSISTPAAAENILEAVITSKDAKLVVENEKEDKKSELVSPVETYRNG-----------TVADKTSEQPDETKQE-KPE----------VKVKEDDTVPTDD------TKELDDKLTSQDLPKEVVTIKSTQKQSNTILSKVKNTLVKAKKAITGKSSNTKTPPSEPKGEIRV 1139
+ ESS+E ++KKEE V PVKESE + KDV E S ++ + +V EKPQE V KEC DKVED + KE + + T SS + T +E Q + +E + E +L VE L KE+ V K E E EAKDV T+ QPET + E+V SIST E LE TS+ +L+ EN KE K E V+ +ET ++ A + +E+P E+++E K E VK KE + D TK+ DD TSQD K V KS QKQSN I++KVK +LVKAKKAI GKS+N+K+ SE KGE++V
Sbjct: 230 NVSESSVEAIEKKEEQVVVIPVKESEAVVVKDVENSEAESKTEETPVPVPEVEEKPQEKSEVAELVEKECAEVEPKESVEVEIVKDEATLTDKVEDTELLKEVQTTKEESPVTESSDQVTSTYEEAQVEIKEDRVECPPDVAENKEKELIATNVVEGLSKEEVVELGKTEVENEAKDVKTEEDIGEKRITEELNQPETNKVEDVSSSISTTEVIEKSLEGENTSRGIELIAENGKESIKDETVTSLETSKDREAEEKVDEVTTATAKEQAEEPQESEREVKGEESVQTGETNLVKEKEAGGIAKPDFPNPESTKDGDDTKTSQDPLKGEVAAKSIQKQSNNIIAKVKQSLVKAKKAILGKSANSKSLSSETKGEVKV 606
BLAST of XM_017370791.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6R6L7 ((Serine/threonine-protein kinase kinX {ECO:0000313|EMBL:PSS21643.1}))
HSP 1 Score: 110.923 bits (276), Expect = 3.066e-22
Identity = 90/209 (43.06%), Postives = 120/209 (57.42%), Query Frame = 0
Match: A0A2R6R6L7 ((Serine/threonine-protein kinase kinX {ECO:0000313|EMBL:PSS21643.1}))
HSP 1 Score: 110.923 bits (276), Expect = 3.066e-22
Identity = 90/209 (43.06%), Postives = 120/209 (57.42%), Query Frame = 0
Query: 955 LVEELPKEKAVTSMKVEKETEAKDVNTD---------SAQPETKETEEVVKSISTPAAAENILEAVITSKDAKLVVENEKEDKKSELVSPVETYRNGTVADK-------TSEQPDETKQEKPEVKVKEDDTVPTDDTKELDDK----LTSQDLP-----KEVVTIKSTQKQSNTILSKVKNTLVKAKKAITGKSSNTKTPPSEPKGEIR 1138
+VE L KE V S KVE E+E K+VNT+ S +P+T + E+ SIS AE LE I+++ +LV EN KE K E+V+ VET +NG V +K T E P E + K E +VK + T +T + +K + D P KE V K T KQSNTI+SKVK +LVKAKKAI GKS+N+KT SE KG+++
Sbjct: 441 IVEVLSKEVVVDSGKVELESEGKNVNTEEEREFVTEESNEPKTNKVEDASSSISPTEVAEKSLEGEISTRGIELVAENGKESIKDEMVTSVETEKNGEVDEKVVEVTTPTVEVPAEEPK-KSETEVKGAENAETGETNYVQEKEAGEIAKSDFPTPEPPKEEVLTKPTSKQSNTIMSKVKQSLVKAKKAIIGKSTNSKTVSSEAKGDVK 648
BLAST of XM_017370791.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4D1U8 ((Uncharacterized protein {ECO:0000313|EMBL:THF96224.1}))
HSP 1 Score: 107.842 bits (268), Expect = 6.298e-22
Identity = 143/428 (33.41%), Postives = 208/428 (48.60%), Query Frame = 0
Match: A0A4S4D1U8 ((Uncharacterized protein {ECO:0000313|EMBL:THF96224.1}))
HSP 1 Score: 107.842 bits (268), Expect = 6.298e-22
Identity = 143/428 (33.41%), Postives = 208/428 (48.60%), Query Frame = 0
Query: 756 TVPTL-AEEVKNVTEPAVVEEMKQT---PVFE-EVKNVDDMPDVTEPEAKKVESYFVTEASELPVQEQK-AESVEEKLIEKPKAEGIPESSLEPVDKKEEAVD-FPVKESEPA-LAKDVGILEPLSIKDDAVESLTDVLEKPQEYVAVETKECVHGSADKVEDVKFSKEEEFNGKTPLETTSSVEATLPTKEGQADAEETILGGEADLVEELPKEKAVTSMKVEKETEAKDVNT------------DSAQPETKETEEVVKSISTPAAAENILEAVITSKDAKLVVENEKEDKKSELVSPVETYRNGTVADKTSEQPDETKQE------KPEVKVKEDDTVPTDDTK------------------ELDDKLTSQDLP-KEVVTIKSTQKQSNTILSKVKNTLVKAKKAITGKSSNTKTPPSEPKGEIR 1138
T P+ +EE +P++ EE+K+T PV + VK+ D P VT+ E ++ E QEQ ESVE++L E+PK + E+S+E V+K EE V+ PVKESE A + KD +P K++ E + +V K QE V A+++E +E + E +VE KE+ V S K+E+E+E KDV T +S +P+T + EE+ +IS E LE TS+D L+ EN KE K E+V+ V+T +NG + K E T +E K + + K ++TV T +T E D TS++ P EV+++K T KQSN ++KVK +LVKAKKAI GKS N+KT SE K +IR
Sbjct: 54 TAPSCESEEKYKKIKPSIAEEVKKTDDAPVLDVSVKDKPDSPVVTDNTKSPPEDQPTIDSVEKQPQEQPPVESVEKQLEEQPKMDDTSETSVEAVEKSEEQVEVLPVKESEAAVVVKDTENSKPEPKKEEIPEPVPEVDNKQQEQSEV---------AEQIE-------KELS-------------------------------ETYVVEGQSKEEVVESGKIEQESEGKDVKTGEENEEKKGIAKESDEPKTDKVEELRSAISPTEVTEKCLEGDNTSRDIGLIAENGKESIKDEVVNSVKTKKNGEMEGKVDEVTTSTIKEPIEESQKSKTEAKGEETVQTSETNLEKEKEAGDIAKPEVPTPESTDTKTSKEAPTDEVISVKQTSKQSNNFIAKVKQSLVKAKKAIIGKSPNSKTVSSETKSDIR 434
BLAST of XM_017370791.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZN10 ((Putative neurofilament heavy polypeptide-like {ECO:0000313|EMBL:MPA45454.1}))
HSP 1 Score: 105.916 bits (263), Expect = 6.287e-21
Identity = 92/225 (40.89%), Postives = 121/225 (53.78%), Query Frame = 0
Match: A0A5B6ZN10 ((Putative neurofilament heavy polypeptide-like {ECO:0000313|EMBL:MPA45454.1}))
HSP 1 Score: 105.916 bits (263), Expect = 6.287e-21
Identity = 92/225 (40.89%), Postives = 121/225 (53.78%), Query Frame = 0
Query: 954 DLVEELPKEKAVTSMKVEKETEAKDVNTDS-----------AQPETKETEEVVKSISTPAAAENILEAVITSKDAKLVVENEKEDKKSELVSPVETYRNG-----------TVADKTSEQPDETKQE-KPE----------VKVKEDDTVPTDD------TKELDDKLTSQDLPKEVVTIKSTQKQSNTILSKVKNTLVKAKKAITGKSSNTKTPPSEPKGEIRV 1139
++VE L KE+ V K E E EAKDV T+ QPET + E+V SIST E LE TS+ +L+ EN KE K E V+ +ET ++ A + +E+P E+++E K E VK KE + D TK+ DD TSQD K V KS QKQSN I++KVK +LVKAKKAI GKS+N+K+ SE KGE++V
Sbjct: 312 NVVEGLSKEEVVELGKTEVENEAKDVKTEEDIGEKRITEELNQPETNKVEDVSSSISTTEVIEKSLEGENTSRGIELIAENGKESIKDETVTSLETSKDREAEEKVDEVTTATAKEQAEEPQESEREVKGEESVQTGETNLVKEKEAGGIAKPDFPNPESTKDGDDTKTSQDPLKGEVAAKSIQKQSNNIIAKVKQSLVKAKKAILGKSANSKSLSSETKGEVKV 536
BLAST of XM_017370791.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0F6M2 ((Neurofilament protein-like protein {ECO:0000313|EMBL:GFY94344.1}))
HSP 1 Score: 104.76 bits (260), Expect = 3.298e-20
Identity = 91/208 (43.75%), Postives = 124/208 (59.62%), Query Frame = 0
Match: A0A7J0F6M2 ((Neurofilament protein-like protein {ECO:0000313|EMBL:GFY94344.1}))
HSP 1 Score: 104.76 bits (260), Expect = 3.298e-20
Identity = 91/208 (43.75%), Postives = 124/208 (59.62%), Query Frame = 0
Query: 955 LVEELPKEKAVTSMKVEKETEAKDVNTD---------SAQPETKETEEVVKSISTPAAAENILEAVITSKDAKLVVENEKEDKKSELVSPVETYRNGTVADK-------TSEQP-DETKQEKPEVKVKED-DTVPTDDTKELD-DKLTSQDLP-----KEVVTIKSTQKQSNTILSKVKNTLVKAKKAITGKSSNTKTPPSEPKGEIR 1138
+VE L KE V S K+E E+E K+V T+ S +P+T + E+V S+ AE LE I+++ +LVVEN KE K E V+ VET +NG V +K T E P +E K+ + EVK E+ +TV T+ KE + ++ D P KE V K T KQSNTI+SKVK +LVKAKKAI GKS+N+KT SE KG+++
Sbjct: 468 VVEVLSKEVIVDSGKIELESEGKNVETEEEKKFVTEESNEPKTNKVEDV----SSSEVAEKSLEGEISTRGIELVVENGKESIKDETVTSVETEKNGEVDEKVVEVTTPTVEVPAEEPKKSETEVKGAENAETVETNYVKEKEAGEIAKSDFPTPEPPKEEVLTKPTSKQSNTIMSKVKQSLVKAKKAIIGKSTNSKTVSSEAKGDVK 671
BLAST of XM_017370791.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A4KUN3 ((Uncharacterized protein {ECO:0000313|EMBL:KAE9446737.1}) (Fragment))
HSP 1 Score: 97.4413 bits (241), Expect = 7.098e-18
Identity = 109/287 (37.98%), Postives = 142/287 (49.48%), Query Frame = 0
Match: A0A6A4KUN3 ((Uncharacterized protein {ECO:0000313|EMBL:KAE9446737.1}) (Fragment))
HSP 1 Score: 97.4413 bits (241), Expect = 7.098e-18
Identity = 109/287 (37.98%), Postives = 142/287 (49.48%), Query Frame = 0
Query: 905 ADKVEDVKFSKEEEFNGKTPLETTSS-------VEATLPTKEGQADAEETI-------------LGGEADL----VEELPKEKAVTSMKVEKETEAKDVNTDS----AQPETKETEEVVKSISTPAAAENILEAVITSKDAKLVVENEKEDKKSELVSPVETYRNGT-------VADKTSEQPDETKQEKPEVKVKEDDTVPTDDT------------------KELDDKLTSQDLPKEVVTIKSTQKQSNTILSKVKNTLVKAKKAITGKSSNTKTPPSEPKGEIR 1138
ADK+ED KEEE + P+ T SS VEA + E + T+ GG L VE LPKE+ V S KVE ETE K T+ + T+E++E V +S E LE V TS+D +L EN K K E V+PV T +NG VA T +P E +E E +VK ++ V T +T K+ DD +TS + PKE V K + KQS+ I+SKVK +LVKAKKAI GKS N KT SE KG+++
Sbjct: 438 ADKIED-PVVKEEETAKEEPVVTESSDQVTPTIVEAQIDNTEDGGEKSPTVVAESTSIADKGKEFGGTEVLPKEEVEVLPKEEVVESGKVELETEGKSAKTEEEKEVGKAVTEESDEPV--VSATEVTEKALEKVNTSRDIELPAENGKASVKDETVTPVGTEKNGVDEGKVEEVATTTVGEPVEEPKES-ETEVKGEEAVQTGETTLEQEKEGKPDVPIVEPAKDGDDTITSGEPPKEEVPAKPSSKQSHNIISKVKQSLVKAKKAILGKSPNPKTVSSEAKGDVQ 720
| Match Name | Stats | Description |
|---|---|---|
| A0A5B6ZLT8 | E-Value: 2.667e-37, PID: 38.89 | (Putative neurofilament heavy polypeptide-like {EC... [more] |
| A0A4S4DQL1 | E-Value: 4.289e-28, PID: 38.96 | (Uncharacterized protein {ECO:0000313|EMBL:THG0538... [more] |
| A0A5J5B288 | E-Value: 2.524e-26, PID: 35.98 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8536... [more] |
| A0A5B6ZNA0 | E-Value: 2.288e-24, PID: 36.97 | (Putative neurofilament heavy polypeptide-like {EC... [more] |
| A0A5B6ZPQ7 | E-Value: 3.139e-24, PID: 36.60 | (Putative neurofilament heavy polypeptide-like {EC... [more] |
| A0A2R6R6L7 | E-Value: 3.066e-22, PID: 43.06 | (Serine/threonine-protein kinase kinX {ECO:0000313... [more] |
| A0A4S4D1U8 | E-Value: 6.298e-22, PID: 33.41 | (Uncharacterized protein {ECO:0000313|EMBL:THF9622... [more] |
| A0A5B6ZN10 | E-Value: 6.287e-21, PID: 40.89 | (Putative neurofilament heavy polypeptide-like {EC... [more] |
| A0A7J0F6M2 | E-Value: 3.298e-20, PID: 43.75 | (Neurofilament protein-like protein {ECO:0000313|E... [more] |
| A0A6A4KUN3 | E-Value: 7.098e-18, PID: 37.98 | (Uncharacterized protein {ECO:0000313|EMBL:KAE9446... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |