Resource Type:
Polypeptide
Name:
XM_017371784.1
Identifier:
XM_017371784.1-protein
Sequence:
MGHIYYIVVALPCTVGAIVLALVHIYRHLLNYTEPTYQRYIVRIIFMVPV
YALMSFLSLVINESATIYFNSIREIYEAWVIYNFLSLCLAWVGGPGAVVI
SLSGRFLKSNWCLMTCCFPPIPLDGRFIRRCKQGCLQFVILKPILVAVTL
VLYANGKYHDGNFSAGQSYLYLTIIYTFSYSVALYALALFYVACRDLLQP
FNPVPKFIIIKSVVFLTYWQGVLVFLAAKSGVIKDTKEAAEFQNFIICVE
MLIAAVGHLYAFPYKEYAGANIGISRGFSENLAHSLKLNDFYHDTVHQFA
PTYHDYVLYNHSESEGESRKYRARTFVPTGPEMDTVRKNKHMTGNKLEDI
QLSSISSSTPPNQSTVQVLQDTSKSEAMNSSLLMDASLAVPYDLTLVDID
MSSYSGEVPAATNESGTR
Sequence Length:
418
Sequence Checksum:
8168f8e0bc6fe5802f4af74197c492f9
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017371784.1, derives from mRNA, XM_017371784.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017371784.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
back to top
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017371784.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7H1C9 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5946812.1}))
HSP 1 Score: 721.85 bits (1862), Expect = 0.000e+0
Identity = 347/420 (82.62%), Postives = 378/420 (90.00%), Query Frame = 0
Match: A0A7J7H1C9 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5946812.1}))
HSP 1 Score: 721.85 bits (1862), Expect = 0.000e+0
Identity = 347/420 (82.62%), Postives = 378/420 (90.00%), Query Frame = 0
Query: 1 MGHIYYIVVALPCTVGAIVLALVHIYRHLLNYTEPTYQRYIVRIIFMVPVYALMSFLSLVINESATIYFNSIREIYEAWVIYNFLSLCLAWVGGPGAVVISLSGRFLKSNWCLMTCCFPPIPLDGRFIRRCKQGCLQFVILKPILVAVTLVLYANGKYHDGNFSAGQSYLYLTIIYTFSYSVALYALALFYVACRDLLQPFNPVPKFIIIKSVVFLTYWQGVLVFLAAKSGVIKDTKEAAEFQNFIICVEMLIAAVGHLYAFPYKEYAGANIGISRGFSENLAHSLKLNDFYHDTVHQFAPTYHDYVLYNHSESEGESRKYRARTFVPTGPEMDTVRKNKHMTGNKLEDIQLSSISSSTPPNQSTVQVLQDTSKSEAMNSSLLMDASLA--VPYDLTLVDIDMSSYSGEVPAATNESGTR 418
M IYY++VALPCTVGAI LAL+HIYRHLLNYTEPTYQRYIVRIIFMVPVYALMSFLSLV+NESA IYFNSIREIYEAWVIYNFL+LCLAWVGGPGAVV+SLSGR LK +W LMTCCF PIPLDGRFIRRCKQGCLQFVILKP+LVAVT +LYA GKYHDGNFS QSYLYLT+IYT SYSVALY+LALFYVACRDLLQPFNPVPKFIIIKSVVFLTYWQGVLVFLAAKSG I+DT+EAAEFQNFIICVEMLIAAVGHLYAFPYKEYAGANIG+SRGF+ +LAH+LKLNDFYHDTVHQFAPTYHDYVLYNH E E RKYRARTFVPTGPEMDTVRKNKH+ GNKL+D+QLSS+ SS + + +T SEAMNSSLLMD S + VPYDL+L+D+DM++YS +VPAA E GTR
Sbjct: 1 MAPIYYLLVALPCTVGAIALALIHIYRHLLNYTEPTYQRYIVRIIFMVPVYALMSFLSLVLNESA-IYFNSIREIYEAWVIYNFLALCLAWVGGPGAVVLSLSGRVLKPSWYLMTCCFSPIPLDGRFIRRCKQGCLQFVILKPVLVAVTFILYAKGKYHDGNFSVDQSYLYLTVIYTVSYSVALYSLALFYVACRDLLQPFNPVPKFIIIKSVVFLTYWQGVLVFLAAKSGFIRDTEEAAEFQNFIICVEMLIAAVGHLYAFPYKEYAGANIGVSRGFTASLAHALKLNDFYHDTVHQFAPTYHDYVLYNHGEGEVGPRKYRARTFVPTGPEMDTVRKNKHLFGNKLDDVQLSSLPSSGNATPQNLGTMHNTKNSEAMNSSLLMDVSHSHNVPYDLSLIDVDMATYSAKVPAA-KEPGTR 418
BLAST of XM_017371784.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068VDK6 ((Uncharacterized protein {ECO:0000313|EMBL:CDP17753.1}))
HSP 1 Score: 716.842 bits (1849), Expect = 0.000e+0
Identity = 355/423 (83.92%), Postives = 384/423 (90.78%), Query Frame = 0
Match: A0A068VDK6 ((Uncharacterized protein {ECO:0000313|EMBL:CDP17753.1}))
HSP 1 Score: 716.842 bits (1849), Expect = 0.000e+0
Identity = 355/423 (83.92%), Postives = 384/423 (90.78%), Query Frame = 0
Query: 1 MGHIYYIVVALPCTVGAIVLALVHIYRHLLNYTEPTYQRYIVRIIFMVPVYALMSFLSLVINESATIYFNSIREIYEAWVIYNFLSLCLAWVGGPGAVVISLSGRFLKSNWCLMTCCFPPIPLDGRFIRRCKQGCLQFVILKPILVAVTLVLYANGKYHDGNFSAGQSYLYLTIIYTFSYSVALYALALFYVACRDLLQPFNPVPKFIIIKSVVFLTYWQGVLVFLAAKSGVIKDTKEAAEFQNFIICVEMLIAAVGHLYAFPYKEYAGANIGISRGFSENLAHSLKLNDFYHDTVHQFAPTYHDYVLYNHSESEGESRKYRARTFVPTGPEMDTVRKNKHMTGNKLEDIQ---LSSISSSTPPNQSTVQVLQDTSKSEAMNSSLLMDAS--LAVPYDLTLVDIDMSSYSGEVPAATNESGTR 418
MG +YYI+VALPCT+GAI LA+ HIYRHLLNYTEPTYQRYIVRIIFMVPVYALMSFLSL++++ A IYF+SIREIYEAWVIYNFLSLCLAWVGGPGAVVISLSGR LK NWCLMTCCFPPIPLDGRFIRRCKQGCLQFVILKP LVA+TL+LYA GKY DGNF+ Q+YLYLTIIYTFSYS+ALYALALFYVACRDLLQPFNPVPKFIIIKSVVFLTYWQGVLVFLAAKSG IKDTKEAAEFQ+FIICVEMLIAAVGHLYAFPYKEYAGAN+ SRGF+ +LAH+LKLNDFYHDTVHQFAPTYHDYVLYNHSE E +RKYRARTFVPTGPEMDTVRK+KH+ GNKLEDIQ LSS SSTP N V QDT+KSEAMNSSLLMD+S L+ PYDL+L+DIDMS+Y +VPAA NESG R
Sbjct: 1 MGPLYYIIVALPCTIGAIALAISHIYRHLLNYTEPTYQRYIVRIIFMVPVYALMSFLSLLLDDKA-IYFDSIREIYEAWVIYNFLSLCLAWVGGPGAVVISLSGRVLKPNWCLMTCCFPPIPLDGRFIRRCKQGCLQFVILKPFLVAITLILYAKGKYEDGNFNPMQAYLYLTIIYTFSYSMALYALALFYVACRDLLQPFNPVPKFIIIKSVVFLTYWQGVLVFLAAKSGFIKDTKEAAEFQSFIICVEMLIAAVGHLYAFPYKEYAGANVVGSRGFTASLAHALKLNDFYHDTVHQFAPTYHDYVLYNHSEGEEGARKYRARTFVPTGPEMDTVRKSKHIFGNKLEDIQLSSLSSSGSSTPQNPGAV---QDTAKSEAMNSSLLMDSSNGLSAPYDLSLIDIDMSNYPAKVPAA-NESGQR 418
BLAST of XM_017371784.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6W0I7 ((transmembrane protein 184A-like {ECO:0000313|RefSeq:XP_027108099.1, ECO:0000313|RefSeq:XP_027108100.1}))
HSP 1 Score: 716.842 bits (1849), Expect = 0.000e+0
Identity = 355/423 (83.92%), Postives = 384/423 (90.78%), Query Frame = 0
Match: A0A6P6W0I7 ((transmembrane protein 184A-like {ECO:0000313|RefSeq:XP_027108099.1, ECO:0000313|RefSeq:XP_027108100.1}))
HSP 1 Score: 716.842 bits (1849), Expect = 0.000e+0
Identity = 355/423 (83.92%), Postives = 384/423 (90.78%), Query Frame = 0
Query: 1 MGHIYYIVVALPCTVGAIVLALVHIYRHLLNYTEPTYQRYIVRIIFMVPVYALMSFLSLVINESATIYFNSIREIYEAWVIYNFLSLCLAWVGGPGAVVISLSGRFLKSNWCLMTCCFPPIPLDGRFIRRCKQGCLQFVILKPILVAVTLVLYANGKYHDGNFSAGQSYLYLTIIYTFSYSVALYALALFYVACRDLLQPFNPVPKFIIIKSVVFLTYWQGVLVFLAAKSGVIKDTKEAAEFQNFIICVEMLIAAVGHLYAFPYKEYAGANIGISRGFSENLAHSLKLNDFYHDTVHQFAPTYHDYVLYNHSESEGESRKYRARTFVPTGPEMDTVRKNKHMTGNKLEDIQ---LSSISSSTPPNQSTVQVLQDTSKSEAMNSSLLMDAS--LAVPYDLTLVDIDMSSYSGEVPAATNESGTR 418
MG +YYI+VALPCT+GAI LA+ HIYRHLLNYTEPTYQRYIVRIIFMVPVYALMSFLSL++++ A IYF+SIREIYEAWVIYNFLSLCLAWVGGPGAVVISLSGR LK NWCLMTCCFPPIPLDGRFIRRCKQGCLQFVILKP LVA+TL+LYA GKY DGNF+ Q+YLYLTIIYTFSYS+ALYALALFYVACRDLLQPFNPVPKFIIIKSVVFLTYWQGVLVFLAAKSG IKDTKEAAEFQ+FIICVEMLIAAVGHLYAFPYKEYAGAN+ SRGF+ +LAH+LKLNDFYHDTVHQFAPTYHDYVLYNHSE E +RKYRARTFVPTGPEMDTVRK+KH+ GNKLEDIQ LSS SSTP N V QDT+KSEAMNSSLLMD+S L+ PYDL+L+DIDMS+Y +VPAA NESG R
Sbjct: 1 MGPLYYIIVALPCTIGAIALAISHIYRHLLNYTEPTYQRYIVRIIFMVPVYALMSFLSLLLDDKA-IYFDSIREIYEAWVIYNFLSLCLAWVGGPGAVVISLSGRVLKPNWCLMTCCFPPIPLDGRFIRRCKQGCLQFVILKPFLVAITLILYAKGKYEDGNFNPMQAYLYLTIIYTFSYSMALYALALFYVACRDLLQPFNPVPKFIIIKSVVFLTYWQGVLVFLAAKSGFIKDTKEAAEFQSFIICVEMLIAAVGHLYAFPYKEYAGANVVGSRGFTASLAHALKLNDFYHDTVHQFAPTYHDYVLYNHSEGEEGARKYRARTFVPTGPEMDTVRKSKHIFGNKLEDIQLSSLSSSGSSTPQNPGAV---QDTAKSEAMNSSLLMDSSNGLSAPYDLSLIDIDMSNYPAKVPAA-NESGQR 418
BLAST of XM_017371784.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6WHU6 ((transmembrane protein 184A-like {ECO:0000313|RefSeq:XP_027114999.1, ECO:0000313|RefSeq:XP_027115001.1}))
HSP 1 Score: 715.301 bits (1845), Expect = 0.000e+0
Identity = 356/423 (84.16%), Postives = 386/423 (91.25%), Query Frame = 0
Match: A0A6P6WHU6 ((transmembrane protein 184A-like {ECO:0000313|RefSeq:XP_027114999.1, ECO:0000313|RefSeq:XP_027115001.1}))
HSP 1 Score: 715.301 bits (1845), Expect = 0.000e+0
Identity = 356/423 (84.16%), Postives = 386/423 (91.25%), Query Frame = 0
Query: 1 MGHIYYIVVALPCTVGAIVLALVHIYRHLLNYTEPTYQRYIVRIIFMVPVYALMSFLSLVINESATIYFNSIREIYEAWVIYNFLSLCLAWVGGPGAVVISLSGRFLKSNWCLMTCCFPPIPLDGRFIRRCKQGCLQFVILKPILVAVTLVLYANGKYHDGNFSAGQSYLYLTIIYTFSYSVALYALALFYVACRDLLQPFNPVPKFIIIKSVVFLTYWQGVLVFLAAKSGVIKDTKEAAEFQNFIICVEMLIAAVGHLYAFPYKEYAGANIGISRGFSENLAHSLKLNDFYHDTVHQFAPTYHDYVLYNHSESEGESRKYRARTFVPTGPEMDTVRKNKHMTGNKLEDIQLSSISSS---TPPNQSTVQVLQDTSKSEAMNSSLLMDAS--LAVPYDLTLVDIDMSSYSGEVPAATNESGTR 418
MG +YYI+VALPCT+GAI LA+ HIYRHLLNYTEPTYQRYIVRIIFMVPVYALMSFLSL++++ A IYF+SIREIYEAWVIYNFLSLCLAWVGGPGAVVISLSGR LK NWCLMTCCFPPIPLDGRFIRRCKQGCLQFVILKP LVA+TL+LYA GKY DGNF+ Q+YLYLTIIYTFSYS+ALYALALFYVACRDLLQPFNPVPKFIIIKSVVFLTYWQGVLVFLAAKSG IKDTKEAAEFQ+FIICVEMLIAAVGHLYAFPYKEYAGAN+ SRGF+ +LAH+LKLNDFYHDTVHQFAPTYHDYVLYNHSE E +RKYRARTFVPTGPEMDTVRK+KH+ GNKLEDIQLSS+SSS TP N V QDT+KSEAMNSSLLMD+S L+ PYDL+L+DIDMS+Y +VPAA NESG R
Sbjct: 1 MGPLYYIIVALPCTIGAIALAISHIYRHLLNYTEPTYQRYIVRIIFMVPVYALMSFLSLLLDDKA-IYFDSIREIYEAWVIYNFLSLCLAWVGGPGAVVISLSGRVLKPNWCLMTCCFPPIPLDGRFIRRCKQGCLQFVILKPFLVAITLILYAKGKYEDGNFNPMQAYLYLTIIYTFSYSMALYALALFYVACRDLLQPFNPVPKFIIIKSVVFLTYWQGVLVFLAAKSGFIKDTKEAAEFQSFIICVEMLIAAVGHLYAFPYKEYAGANVVGSRGFTASLAHALKLNDFYHDTVHQFAPTYHDYVLYNHSEGEEGARKYRARTFVPTGPEMDTVRKSKHIFGNKLEDIQLSSLSSSGSCTPQNPGAV---QDTAKSEAMNSSLLMDSSNGLSAPYDLSLIDIDMSNYPEKVPAA-NESGQR 418
BLAST of XM_017371784.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7HJI3 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5952076.1}))
HSP 1 Score: 708.753 bits (1828), Expect = 0.000e+0
Identity = 347/420 (82.62%), Postives = 375/420 (89.29%), Query Frame = 0
Match: A0A7J7HJI3 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5952076.1}))
HSP 1 Score: 708.753 bits (1828), Expect = 0.000e+0
Identity = 347/420 (82.62%), Postives = 375/420 (89.29%), Query Frame = 0
Query: 1 MGHIYYIVVALPCTVGAIVLALVHIYRHLLNYTEPTYQRYIVRIIFMVPVYALMSFLSLVINESATIYFNSIREIYEAWVIYNFLSLCLAWVGGPGAVVISLSGRFLKSNWCLMTCCFPPIPLDGRFIRRCKQGCLQFVILKPILVAVTLVLYANGKYHDGNFSAGQSYLYLTIIYTFSYSVALYALALFYVACRDLLQPFNPVPKFIIIKSVVFLTYWQGVLVFLAAKSGVIKDTKEAAEFQNFIICVEMLIAAVGHLYAFPYKEYAGANIGISRGFSENLAHSLKLNDFYHDTVHQFAPTYHDYVLYNHSESEGESRKYRARTFVPTGPEMDTVRKNKHMTGNKLEDIQLSSISSSTPPNQSTVQVLQDTSKSEAMNSSLLMDASLA--VPYDLTLVDIDMSSYSGEVPAATNESGTR 418
M IYYI VALPCT+GAI LAL+HIYRHLLNYTEPTYQRYIVRIIFMVPVYALMSFLSLV+NES +IYFNSIREIYEAWVIYNFLSLCLAWVGGPGAVV+SLSGR LK NWCLMTCCFPPIPLDGRFIRRCKQGCLQFVILKPILVAVTL+LYA GKYHDGNFS QS+LYLTIIYT SYS+ALY+LALFYVACRDLLQPFNPVPKFIIIKSVVFLTYWQGVLVFLAAKSG IK+ ++AAEFQNFI+CVEMLIAAVGHL+AFPYKEYAGANIG RGFS +LAH+LKLNDFYHDTVHQFAPTYHDYVLYNHSE E +KYR+RTFVPTGPEMDTVRKNKHM GNKLED+QL+S+SSS + +DT EA+NSSLLMD S + VPYDL+L+DID+S YS VP A NE G R
Sbjct: 1 MAPIYYIFVALPCTIGAIALALLHIYRHLLNYTEPTYQRYIVRIIFMVPVYALMSFLSLVLNES-SIYFNSIREIYEAWVIYNFLSLCLAWVGGPGAVVLSLSGRVLKPNWCLMTCCFPPIPLDGRFIRRCKQGCLQFVILKPILVAVTLLLYAKGKYHDGNFSPDQSFLYLTIIYTVSYSMALYSLALFYVACRDLLQPFNPVPKFIIIKSVVFLTYWQGVLVFLAAKSGFIKNAEDAAEFQNFIVCVEMLIAAVGHLFAFPYKEYAGANIGAPRGFSASLAHALKLNDFYHDTVHQFAPTYHDYVLYNHSEGEEGPKKYRSRTFVPTGPEMDTVRKNKHMLGNKLEDVQLASLSSSGSSSPQNPGTTEDTKNLEAINSSLLMDVSNSPTVPYDLSLIDIDVSDYSASVP-AVNEPGNR 418
BLAST of XM_017371784.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7CDV8 ((Uncharacterized protein {ECO:0000313|EMBL:MPA79078.1}))
HSP 1 Score: 705.286 bits (1819), Expect = 0.000e+0
Identity = 346/420 (82.38%), Postives = 376/420 (89.52%), Query Frame = 0
Match: A0A5B7CDV8 ((Uncharacterized protein {ECO:0000313|EMBL:MPA79078.1}))
HSP 1 Score: 705.286 bits (1819), Expect = 0.000e+0
Identity = 346/420 (82.38%), Postives = 376/420 (89.52%), Query Frame = 0
Query: 1 MGHIYYIVVALPCTVGAIVLALVHIYRHLLNYTEPTYQRYIVRIIFMVPVYALMSFLSLVINESATIYFNSIREIYEAWVIYNFLSLCLAWVGGPGAVVISLSGRFLKSNWCLMTCCFPPIPLDGRFIRRCKQGCLQFVILKPILVAVTLVLYANGKYHDGNFSAGQSYLYLTIIYTFSYSVALYALALFYVACRDLLQPFNPVPKFIIIKSVVFLTYWQGVLVFLAAKSGVIKDTKEAAEFQNFIICVEMLIAAVGHLYAFPYKEYAGANIGISRGFSENLAHSLKLNDFYHDTVHQFAPTYHDYVLYNHSESEGESRKYRARTFVPTGPEMDTVRKNKHMTGNKLEDIQLSSISSSTPPNQSTVQVLQDTSKSEAMNSSLLMDA--SLAVPYDLTLVDIDMSSYSGEVPAATNESGTR 418
M YYI+ ALPCTVGAI LA+ HIYRHLLNYTEPTYQRYIVRIIFMVPVYALMSFLSL++NES +IYFNSIRE+YEAWVIYNFLSLCLAWVGGPGAVV+SLSGR LK N CLMTCCFPPIPLDGRF+RRCKQGCLQFVILKPILVAVT +LYA GKY DGNF+A QSYLYLTIIYT SY+ ALYALALFYVACRDLLQPFNPVPKFIIIKSVVFLTYWQGVLVFLAAKSG IKD KEAAEFQNFIICVEMLIAAVGHLYAFPYKEYAGANIG SRG + +LAH+LKLNDFYHDTVHQFAPTYHDYVLYN SE + +RKYR++TFVPTGPEMDTVR+NKHM GNKL+DIQLSS+SSS + + DT+ SEAMNSSLLMD S +VPYD++L+DIDMS+YS +VPAA NE GTR
Sbjct: 1 MAPFYYIITALPCTVGAIALAIFHIYRHLLNYTEPTYQRYIVRIIFMVPVYALMSFLSLILNES-SIYFNSIREVYEAWVIYNFLSLCLAWVGGPGAVVLSLSGRVLKPNCCLMTCCFPPIPLDGRFLRRCKQGCLQFVILKPILVAVTFILYAKGKYEDGNFNARQSYLYLTIIYTISYTTALYALALFYVACRDLLQPFNPVPKFIIIKSVVFLTYWQGVLVFLAAKSGFIKDAKEAAEFQNFIICVEMLIAAVGHLYAFPYKEYAGANIGGSRGLTGSLAHALKLNDFYHDTVHQFAPTYHDYVLYNPSEGDEGTRKYRSKTFVPTGPEMDTVRRNKHMVGNKLDDIQLSSLSSSGTSTPTKSSSVADTANSEAMNSSLLMDTSNSPSVPYDVSLIDIDMSNYSAKVPAA-NEDGTR 418
BLAST of XM_017371784.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZWZ5 ((Uncharacterized protein {ECO:0000313|EMBL:MPA47981.1}))
HSP 1 Score: 704.131 bits (1816), Expect = 0.000e+0
Identity = 343/420 (81.67%), Postives = 378/420 (90.00%), Query Frame = 0
Match: A0A5B6ZWZ5 ((Uncharacterized protein {ECO:0000313|EMBL:MPA47981.1}))
HSP 1 Score: 704.131 bits (1816), Expect = 0.000e+0
Identity = 343/420 (81.67%), Postives = 378/420 (90.00%), Query Frame = 0
Query: 1 MGHIYYIVVALPCTVGAIVLALVHIYRHLLNYTEPTYQRYIVRIIFMVPVYALMSFLSLVINESATIYFNSIREIYEAWVIYNFLSLCLAWVGGPGAVVISLSGRFLKSNWCLMTCCFPPIPLDGRFIRRCKQGCLQFVILKPILVAVTLVLYANGKYHDGNFSAGQSYLYLTIIYTFSYSVALYALALFYVACRDLLQPFNPVPKFIIIKSVVFLTYWQGVLVFLAAKSGVIKDTKEAAEFQNFIICVEMLIAAVGHLYAFPYKEYAGANIGISRGFSENLAHSLKLNDFYHDTVHQFAPTYHDYVLYNHSESEGESRKYRARTFVPTGPEMDTVRKNKHMTGNKLEDIQLSSISSSTPPNQSTVQVLQDTSKSEAMNSSLLMDA--SLAVPYDLTLVDIDMSSYSGEVPAATNESGTR 418
M Y+I++ALPCT+GAI LA++HIYRHL+NYTEPTYQRYIVRIIFMVPVYALMSFLSL++NES +IYFNSIRE+YEAWVIYNFLSLCLAWVGGPGAVV+SLSGR LK N CLMTCCFPPIPLDGRFIRRCKQGCLQFVILKPILVAVT +LYA GKY DGNFSA QSYLYLTIIY SY++ALY LALFYVACRDLLQPFNPVPKFIIIKSVVFLTYWQGVLVFLAAKSG IKD EAAEFQNFIICVEMLIAAVGHLYAFPYKEYAGANIG+SRG + +LAH+LKLNDFYHDTVHQFAPTYHDYVLYNHSE + +RKYR+RTFVPTGPEMD VR+NKHM GNKL+D+QLSSISSS + + DT+ SEAMNSSLLMD SL+VPYDL+L+DIDMSSY +VP+A N++GTR
Sbjct: 1 MAPFYFIIIALPCTIGAIALAILHIYRHLMNYTEPTYQRYIVRIIFMVPVYALMSFLSLMLNES-SIYFNSIREVYEAWVIYNFLSLCLAWVGGPGAVVLSLSGRVLKPNCCLMTCCFPPIPLDGRFIRRCKQGCLQFVILKPILVAVTFILYAKGKYEDGNFSAKQSYLYLTIIYMVSYTMALYCLALFYVACRDLLQPFNPVPKFIIIKSVVFLTYWQGVLVFLAAKSGFIKDAVEAAEFQNFIICVEMLIAAVGHLYAFPYKEYAGANIGVSRGLTGSLAHALKLNDFYHDTVHQFAPTYHDYVLYNHSEGDEGTRKYRSRTFVPTGPEMDAVRRNKHMFGNKLDDVQLSSISSSATSTPTKPGTVPDTANSEAMNSSLLMDTSNSLSVPYDLSLIDIDMSSYPAKVPSA-NDAGTR 418
BLAST of XM_017371784.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QIJ7 ((Transmembrane protein like {ECO:0000313|EMBL:PSS08437.1}))
HSP 1 Score: 699.893 bits (1805), Expect = 0.000e+0
Identity = 343/422 (81.28%), Postives = 375/422 (88.86%), Query Frame = 0
Match: A0A2R6QIJ7 ((Transmembrane protein like {ECO:0000313|EMBL:PSS08437.1}))
HSP 1 Score: 699.893 bits (1805), Expect = 0.000e+0
Identity = 343/422 (81.28%), Postives = 375/422 (88.86%), Query Frame = 0
Query: 1 MGHIYYIVVALPCTVGAIVLALVHIYRHLLNYTEPTYQRYIVRIIFMVPVYALMSFLSLVINESATIYFNSIREIYEAWVIYNFLSLCLAWVGGPGAVVISLSGRFLKSNWCLMTCCFPPIPLDGRFIRRCKQGCLQFVILKPILVAVTLVLYANGKYHDGNFSAGQSYLYLTIIYTFSYSVALYALALFYVACRDLLQPFNPVPKFIIIKSVVFLTYWQGVLVFLAAKSGVIKDTKEAAEFQNFIICVEMLIAAVGHLYAFPYKEYAGANIGISRGFSENLAHSLKLNDFYHDTVHQFAPTYHDYVLYNHSESEGESRKYRARTFVPTGPEMDTVRKNKHMTGNKLEDIQLSSISSSTPP--NQSTVQVLQDTSKSEAMNSSLLMDA--SLAVPYDLTLVDIDMSSYSGEVPAATNESGTR 418
M IYYI+VALPCTVGAI LAL+HIYRHLLNYTEPTYQRYIVRIIFMVPVYALMSFLSL++NES +IYFNSIREIYEAWVIYNFLSLCLAWVGGPGAVV+SLSGR LK NW LMTCC PPIPLDGRFIRRCKQGCLQFVILKPILVAVTL+LYA GKY DGNFS QSYLYLTIIYTFSYS ALYAL LFY ACRDLLQPFNPVPKFIIIKSVVFLTYWQGVLVFLAAKSG IKDT +AAEFQNFIICVEMLIAAVGHLYAFPYKEYAGANIG SRGF+ +L H++KLNDFYHDTVHQFAPTYHDYVLYNH + + RKYR+RTFVPTGPEMD VRKNKHM GNKL+D+QLS S S+ P +Q++ + ++ SEAMNS+LLMDA S +VPYDL+L+DID+S+YS +VP A N+ TR
Sbjct: 1 MAPIYYILVALPCTVGAIALALLHIYRHLLNYTEPTYQRYIVRIIFMVPVYALMSFLSLILNES-SIYFNSIREIYEAWVIYNFLSLCLAWVGGPGAVVLSLSGRVLKPNWFLMTCCIPPIPLDGRFIRRCKQGCLQFVILKPILVAVTLILYAKGKYQDGNFSPDQSYLYLTIIYTFSYSAALYALVLFYAACRDLLQPFNPVPKFIIIKSVVFLTYWQGVLVFLAAKSGYIKDTDDAAEFQNFIICVEMLIAAVGHLYAFPYKEYAGANIGGSRGFTGSLTHAVKLNDFYHDTVHQFAPTYHDYVLYNHGDGDEGPRKYRSRTFVPTGPEMDAVRKNKHMFGNKLDDVQLSCSSGSSTPHTDQNSTPLAKN---SEAMNSALLMDASNSNSVPYDLSLIDIDLSNYSSKVPEA-NKPETR 417
BLAST of XM_017371784.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1J6HX63 ((Protein laz1-like 1 {ECO:0000313|EMBL:OIS97413.1}))
HSP 1 Score: 697.582 bits (1799), Expect = 0.000e+0
Identity = 342/422 (81.04%), Postives = 374/422 (88.63%), Query Frame = 0
Match: A0A1J6HX63 ((Protein laz1-like 1 {ECO:0000313|EMBL:OIS97413.1}))
HSP 1 Score: 697.582 bits (1799), Expect = 0.000e+0
Identity = 342/422 (81.04%), Postives = 374/422 (88.63%), Query Frame = 0
Query: 1 MGHIYYIVVALPCTVGAIVLALVHIYRHLLNYTEPTYQRYIVRIIFMVPVYALMSFLSLVINESATIYFNSIREIYEAWVIYNFLSLCLAWVGGPGAVVISLSGRFLKSNWCLMTCCFPPIPLDGRFIRRCKQGCLQFVILKPILVAVTLVLYANGKYHDGNFSAGQSYLYLTIIYTFSYSVALYALALFYVACRDLLQPFNPVPKFIIIKSVVFLTYWQGVLVFLAAKSGVIKDTKEAAEFQNFIICVEMLIAAVGHLYAFPYKEYAGANIGISRGFSENLAHSLKLNDFYHDTVHQFAPTYHDYVLYNHSES-EGESRKYRARTFVPTGPEMDTVRKNKHMTGNKLEDIQLSSISSSTPPNQS-TVQVLQDTSKSEAMNSSLLMDAS--LAVPYDLTLVDIDMSSYSGEVPAATNESGTR 418
M IYYI++ALPCTVGAI LAL+HIYRHLLNYTEPTYQRYIVRIIFMVPVYALMSFLSL++NESA IYFNSIREIYEAWVIYNFLSLCLAWVGGPG+VV+SLSGR LK NWCLMTCCFPP+PLDGRFIRRCKQGCLQFVILKPILVAVT++LYA GKY DGNFS QSYLYLTIIYT SYS+ALYALALFYVAC+DLL+PFNPVPKFIIIKSVVFLTYWQGVLVFLAAKS +IKDT+EAAEFQNFIICVEMLIAA HLYAFPYKEYAGANIG SRGF+ +L H+L LNDFYHDTVHQFAPTYHDYVLYNH + EG + KYRARTFVPTGPEMDTVRKNKH+ GNK ED+QLSS+S S N + T KSEAMN SLLMDAS ++ PYDL+L+D+D+S+Y +VPAA SGTR
Sbjct: 1 MAPIYYILIALPCTVGAIGLALLHIYRHLLNYTEPTYQRYIVRIIFMVPVYALMSFLSLILNESA-IYFNSIREIYEAWVIYNFLSLCLAWVGGPGSVVLSLSGRVLKPNWCLMTCCFPPLPLDGRFIRRCKQGCLQFVILKPILVAVTIILYAKGKYEDGNFSPMQSYLYLTIIYTISYSMALYALALFYVACKDLLRPFNPVPKFIIIKSVVFLTYWQGVLVFLAAKSRLIKDTEEAAEFQNFIICVEMLIAAFAHLYAFPYKEYAGANIGPSRGFTASLGHALMLNDFYHDTVHQFAPTYHDYVLYNHGDGEEGGATKYRARTFVPTGPEMDTVRKNKHIFGNKQEDVQLSSLSPSANNNNAQNPGAGHQTGKSEAMNCSLLMDASNNVSAPYDLSLIDVDISNYPSKVPAA--NSGTR 419
BLAST of XM_017371784.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7WKY9 ((transmembrane protein 184A-like {ECO:0000313|RefSeq:XP_009779233.1, ECO:0000313|RefSeq:XP_009779234.1}))
HSP 1 Score: 697.582 bits (1799), Expect = 0.000e+0
Identity = 342/422 (81.04%), Postives = 374/422 (88.63%), Query Frame = 0
Match: A0A1U7WKY9 ((transmembrane protein 184A-like {ECO:0000313|RefSeq:XP_009779233.1, ECO:0000313|RefSeq:XP_009779234.1}))
HSP 1 Score: 697.582 bits (1799), Expect = 0.000e+0
Identity = 342/422 (81.04%), Postives = 374/422 (88.63%), Query Frame = 0
Query: 1 MGHIYYIVVALPCTVGAIVLALVHIYRHLLNYTEPTYQRYIVRIIFMVPVYALMSFLSLVINESATIYFNSIREIYEAWVIYNFLSLCLAWVGGPGAVVISLSGRFLKSNWCLMTCCFPPIPLDGRFIRRCKQGCLQFVILKPILVAVTLVLYANGKYHDGNFSAGQSYLYLTIIYTFSYSVALYALALFYVACRDLLQPFNPVPKFIIIKSVVFLTYWQGVLVFLAAKSGVIKDTKEAAEFQNFIICVEMLIAAVGHLYAFPYKEYAGANIGISRGFSENLAHSLKLNDFYHDTVHQFAPTYHDYVLYNHSES-EGESRKYRARTFVPTGPEMDTVRKNKHMTGNKLEDIQLSSIS-SSTPPNQSTVQVLQDTSKSEAMNSSLLMDAS--LAVPYDLTLVDIDMSSYSGEVPAATNESGTR 418
M IYYI++ALPCTVGAI LAL+HIYRHLLNYTEPTYQRYIVRIIFMVPVYALMSFLSL++NESA IYFNSIREIYEAWVIYNFLSLCLAWVGGPG+VV+SLSGR LK NWCLMTCCFPP+PLDGRFIRRCKQGCLQFVILKPILVAVT++LYA GKY DGNFS QSYLYLTIIYT SYS+ALYALALFYVAC+DLL+PFNPVPKFIIIKSVVFLTYWQGVLVFLAAKS +IKDT+EAAEFQNFIICVEMLIAA HLYAFPYKEYAGANIG SRGF+ +L H+L LNDFYHDTVHQFAPTYHDYVLYNH + EG + KYRARTFVPTGPEMDTVRKNKH+ GNK ED+QLSS+S S+ N T KSEAMN SLLMDAS ++ PYDL+L+D+D+S+Y +VPAA SGTR
Sbjct: 1 MAPIYYILIALPCTVGAIGLALLHIYRHLLNYTEPTYQRYIVRIIFMVPVYALMSFLSLILNESA-IYFNSIREIYEAWVIYNFLSLCLAWVGGPGSVVLSLSGRVLKPNWCLMTCCFPPLPLDGRFIRRCKQGCLQFVILKPILVAVTIILYAKGKYEDGNFSPMQSYLYLTIIYTISYSMALYALALFYVACKDLLRPFNPVPKFIIIKSVVFLTYWQGVLVFLAAKSRLIKDTEEAAEFQNFIICVEMLIAAFAHLYAFPYKEYAGANIGPSRGFTASLGHALMLNDFYHDTVHQFAPTYHDYVLYNHGDGEEGGATKYRARTFVPTGPEMDTVRKNKHIFGNKQEDVQLSSLSLSANNNNPQNPGAGHQTGKSEAMNCSLLMDASNNVSAPYDLSLIDVDISNYPSKVPAA--NSGTR 419
| Match Name | Stats | Description |
|---|---|---|
| A0A7J7H1C9 | E-Value: 0.000e+0, PID: 82.62 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5946... [more] |
| A0A068VDK6 | E-Value: 0.000e+0, PID: 83.92 | (Uncharacterized protein {ECO:0000313|EMBL:CDP1775... [more] |
| A0A6P6W0I7 | E-Value: 0.000e+0, PID: 83.92 | (transmembrane protein 184A-like {ECO:0000313|RefS... [more] |
| A0A6P6WHU6 | E-Value: 0.000e+0, PID: 84.16 | (transmembrane protein 184A-like {ECO:0000313|RefS... [more] |
| A0A7J7HJI3 | E-Value: 0.000e+0, PID: 82.62 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5952... [more] |
| A0A5B7CDV8 | E-Value: 0.000e+0, PID: 82.38 | (Uncharacterized protein {ECO:0000313|EMBL:MPA7907... [more] |
| A0A5B6ZWZ5 | E-Value: 0.000e+0, PID: 81.67 | (Uncharacterized protein {ECO:0000313|EMBL:MPA4798... [more] |
| A0A2R6QIJ7 | E-Value: 0.000e+0, PID: 81.28 | (Transmembrane protein like {ECO:0000313|EMBL:PSS0... [more] |
| A0A1J6HX63 | E-Value: 0.000e+0, PID: 81.04 | (Protein laz1-like 1 {ECO:0000313|EMBL:OIS97413.1}... [more] |
| A0A1U7WKY9 | E-Value: 0.000e+0, PID: 81.04 | (transmembrane protein 184A-like {ECO:0000313|RefS... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |