Resource Type:
Polypeptide
Name:
XM_017368490.1
Identifier:
XM_017368490.1-protein
Sequence:
MALSLYSLPISLTILSTLLIFFINLSIPLKPPSQLPHRLLLNSPHQSCSS
ILDTPRLFRCQFSILHCSPSNGLINYFSLHFCVFRETPFVSIAFLGLCVL
LQFYVLVKTAQSRFSVVVTKLVGHLSLSDSMGAVTLLALGNGAPDVFASV
AAVGGGQARTGFGAILSAGTFVSAFVVGFVAIYAAPFSVLPGQFVRDVLF
YLTAALFLFYVYLSAEIYLWQAVGFVAFYLFFVGVVFWMDLGMGRGKGKG
GGGEDVGKGSVEVVVENVRSFEEGKPRFGFGQAFDQVSKVWAVPVSLLLK
LTVPEPSPSEWSRFYRSANIALCPLLLLYTCKSFMPLDHPVTFLLPSTHF
PLWSVVLIGSSSLAVLHYTVEKDPPKSEQMPIVIAAFVMSVFWISTVAGE
LLNCLAALGSLLQLPPALLGLTVLAWGNSVGDLVADVAVAKAGQPAMAMA
GCFAGPMFNMLFGLGTALVIQTASVYPKAYELHFHVSIVVAFIFLLLSLM
GSLLVVTWCRFRVPRLWGFCLVGLYIVFIIVSLIIAKFSI
Sequence Length:
540
Sequence Checksum:
2da3604aee87cf3369c123b1566e6045
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017368490.1, derives from mRNA, XM_017368490.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017368490.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017368490.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A103YG55 ((Sodium/calcium exchanger membrane region {ECO:0000313|EMBL:KVI08489.1}))
HSP 1 Score: 754.207 bits (1946), Expect = 0.000e+0
Identity = 381/521 (73.13%), Postives = 432/521 (82.92%), Query Frame = 0
Match: A0A103YG55 ((Sodium/calcium exchanger membrane region {ECO:0000313|EMBL:KVI08489.1}))
HSP 1 Score: 754.207 bits (1946), Expect = 0.000e+0
Identity = 381/521 (73.13%), Postives = 432/521 (82.92%), Query Frame = 0
Query: 31 PPSQLPHRLLLNSPHQSCSSILDTPRLFRCQFSILHCS-PSNGLINYFSLHFCVFRETPFVSIAFLGLCVLLQFYVLVKTAQSRFSVVVTKLVGHLSLSDSMGAVTLLALGNGAPDVFASVAAVGGGQARTGFGAILSAGTFVSAFVVGFVAIYAAPFSVLPGQFVRDVLFYLTAALFLFYVYLSAEIYLWQAVGFVAFYLFFVGVVFWMDLGMGRG-KGKGGGGEDVG---------KGSVEVVVENVRS---FEEGKPRFGFGQAFDQVSKVWAVPVSLLLKLTVPEPSPSEWSRFYRSANIALCPLLLLYTCKSFMPLDHPVTFLLPSTHFPLWSVVLIGSSSLAVLHYTVEKDPPKSEQMPIVIAAFVMSVFWISTVAGELLNCLAALGSLLQLPPALLGLTVLAWGNSVGDLVADVAVAKAGQPAMAMAGCFAGPMFNMLFGLGTALVIQTASVYPKAYELHFHVSIVVAFIFLLLSLMGSLLVVTWCRFRVPRLWGFCLVGLYIVFIIVSLIIAK 537
PPS + R LLN+ +CS IL RC FS HCS SNGL+NYFS HFC F + PF+SI FL L V+LQFY+LVKTAQ +FSVVVTKL HL+LS SMGAVTLLALGNGAPDVFAS+AAVGGG ARTGFGAILSAGTFVSA VVGFVAIYAAPF+V P F+RDVLFYLTAALFLFYVYLSAEI+LWQAVGFV FYL FVG VFWMD GM G K K G E VG KGS+E+ EN + F + K FGF QAF+++SK+W PVS +LKLT+P+ SPSEWSR YRSANIALCPL L+Y+CKS MPL HP+ FLLP+ HFPLW VVL GSSS+A++H+ VE+ PP++EQMP+V+ F+MSVFWIST+AGELLNCLAALGSL+++PP+LLGLTVLAWGNSVGDLVADVAVAKAGQPAMAMAGCFAGPMFNMLFGLG ALVIQTA+VYP+AYEL FHVSIVVAF+FL+LSLMGSLLVVTWCRFRVPR WGFCLVGLY+ FI +SL+IAK
Sbjct: 31 PPSTIHRRSLLNT--TTCSHILQIQPNQRCSFSTHHCSVDSNGLLNYFSFHFCHFHQNPFLSIPFLSLTVVLQFYILVKTAQDQFSVVVTKLATHLNLSPSMGAVTLLALGNGAPDVFASIAAVGGGNARTGFGAILSAGTFVSALVVGFVAIYAAPFAVSPAPFIRDVLFYLTAALFLFYVYLSAEIFLWQAVGFVGFYLAFVGFVFWMDFGMDTGGKSKVGSREVVGLVGDGYDDHKGSMEIDSENGSNGMDFTKKKTGFGFRQAFEKISKIWEFPVSTMLKLTIPQASPSEWSRLYRSANIALCPLALMYSCKSVMPLSHPIVFLLPNVHFPLWLVVLFGSSSMAIVHFVVERKPPRTEQMPVVLMGFIMSVFWISTMAGELLNCLAALGSLMEVPPSLLGLTVLAWGNSVGDLVADVAVAKAGQPAMAMAGCFAGPMFNMLFGLGMALVIQTANVYPEAYELQFHVSIVVAFVFLILSLMGSLLVVTWCRFRVPRFWGFCLVGLYVFFIALSLLIAK 549
BLAST of XM_017368490.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BSP0 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8545090.1}))
HSP 1 Score: 742.651 bits (1916), Expect = 0.000e+0
Identity = 414/554 (74.73%), Postives = 456/554 (82.31%), Query Frame = 0
Match: A0A5J5BSP0 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8545090.1}))
HSP 1 Score: 742.651 bits (1916), Expect = 0.000e+0
Identity = 414/554 (74.73%), Postives = 456/554 (82.31%), Query Frame = 0
Query: 1 MALSLYSLP---ISLTILSTLLIFFINLSIPLKPPSQ--LPHRLLLNSPHQSCSSILDTPRLFRCQFSILHCS-PSNGLINYFSLHFCVFRETPFVSIAFLGLCVLLQFYVLVKTAQSRFSVVVTKLVGHLSLSDSMGAVTLLALGNGAPDVFASVAAVGGGQARTGFGAILSAGTFVSAFVVGFVAIYAAPFSVLPGQFVRDVLFYLTAALFLFYVYLSAEIYLWQAVGFVAFYLFFVGVVFWMDLGMGRGKGKGG------GGEDVGKGSVEVVVEN---VRSFEEGKPRFGFGQAFDQVSKVWAVPVSLLLKLTVPEPSPSEWSRFYRSANIALCPLLLLYTCKSFMPLDHPVTFLLPSTHFPLWSVVLIGSSSLAVLHYTVEKDPPKSEQMPIVIAAFVMSVFWISTVAGELLNCLAALGSLLQLPPALLGLTVLAWGNSVGDLVADVAVAKAGQPAMAMAGCFAGPMFNMLFGLGTALVIQTASVYPKAYELHFHVSIVVAFIFLLLSLMGSLLVVTWCRFRVPRLWGFCLVGLYIVFIIVSLIIAKFS 539
MA SL+SL ISL ILSTL F + S P P + +PHR LL+S QSCSSIL P RC FS+LHCS SNGL+NY+SLHFCVF E P +SI+FL L V+LQFY+L+KTAQ RFSVVVTKL L+LS SMGAVTLLALGNGAPDVFASVAAV GG RTGFGAILSAGTFVSAFVVGFVAIYAAPFSV P FVRDVLFYL AALFLFYVYLSAEI+LWQA+GFV FYLFFVG VFWMD GM GKGK G G D K + E +R E GK FG QA Q+SK W +PVS+LLKLT+P+ SPSEWSRFY+SANIAL PL LLY+C SFMPL+HP+ FLLP+THFPLW VVL SSSLAVLH+ VEK+PPK+EQMP+V+ AFVMSVFWISTVAGELLNCLAALG+LL+L PALLGLTVLAWGNSVGDLVADVAVAKAGQPAMAMAGCFAGPMFNMLFGLGTALVIQTA+VYP AYEL FHVSIVVAF+FLLLSLMGS+LVVTWCRFRVPR+WGFCLVGLYI F+ +SL+IAKFS
Sbjct: 1 MAFSLHSLKTSAISLIILSTLFFFLLRPS-PNHPSTNPVIPHRYLLDSTTQSCSSILQIPPQQRCSFSVLHCSGDSNGLLNYYSLHFCVFHENPSLSISFLSLTVVLQFYILIKTAQDRFSVVVTKLSTLLNLSPSMGAVTLLALGNGAPDVFASVAAVRGGHPRTGFGAILSAGTFVSAFVVGFVAIYAAPFSVDPAPFVRDVLFYLIAALFLFYVYLSAEIFLWQAIGFVGFYLFFVGFVFWMDFGMHGGKGKSGTEVGFVGDVDAHKALMASDCEKGEMLRKMEGGKLCFGIRQALGQISKAWELPVSILLKLTIPQTSPSEWSRFYQSANIALFPLALLYSCNSFMPLNHPIIFLLPNTHFPLWLVVLFASSSLAVLHFIVEKEPPKTEQMPVVLLAFVMSVFWISTVAGELLNCLAALGALLKLSPALLGLTVLAWGNSVGDLVADVAVAKAGQPAMAMAGCFAGPMFNMLFGLGTALVIQTANVYPNAYELRFHVSIVVAFVFLLLSLMGSMLVVTWCRFRVPRIWGFCLVGLYIAFMALSLVIAKFS 553
BLAST of XM_017368490.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2J6LJE6 ((Uncharacterized protein {ECO:0000313|EMBL:PLY87457.1}))
HSP 1 Score: 741.11 bits (1912), Expect = 0.000e+0
Identity = 372/514 (72.37%), Postives = 429/514 (83.46%), Query Frame = 0
Match: A0A2J6LJE6 ((Uncharacterized protein {ECO:0000313|EMBL:PLY87457.1}))
HSP 1 Score: 741.11 bits (1912), Expect = 0.000e+0
Identity = 372/514 (72.37%), Postives = 429/514 (83.46%), Query Frame = 0
Query: 31 PPSQLPHRLLLNSPHQS-CSSILDTPRLFRCQFSILHCSP-SNGLINYFSLHFCVFRETPFVSIAFLGLCVLLQFYVLVKTAQSRFSVVVTKLVGHLSLSDSMGAVTLLALGNGAPDVFASVAAVGGGQARTGFGAILSAGTFVSAFVVGFVAIYAAPFSVLPGQFVRDVLFYLTAALFLFYVYLSAEIYLWQAVGFVAFYLFFVGVVFWMDLGMGRGKGKGGGGEDVG--KGSVEVVVEN---VRSFEEGKPRFGFGQAFDQVSKVWAVPVSLLLKLTVPEPSPSEWSRFYRSANIALCPLLLLYTCKSFMPLDHPVTFLLPSTHFPLWSVVLIGSSSLAVLHYTVEKDPPKSEQMPIVIAAFVMSVFWISTVAGELLNCLAALGSLLQLPPALLGLTVLAWGNSVGDLVADVAVAKAGQPAMAMAGCFAGPMFNMLFGLGTALVIQTASVYPKAYELHFHVSIVVAFIFLLLSLMGSLLVVTWCRFRVPRLWGFCLVGLYIVFIIVSLIIAK 537
P +Q+ R LLN+ + CS IL P+ RC FS LHCS SNGL+NYFS HFC F + PF+S+ FL L V+LQFY+LVKTAQ +FSVVVTKL HL+LS SMGAVTLLALGNGAPDVFASVAAVGGG RTGFGAILSAGTFVSA VVGFVAIYAAPF+V P F+RDVLFYLTAALFLFYVYLSAEIYLWQAVGFV FYLFFVG VFWMDLGM G GG +V KGS+E+ EN F + K G QAF+++SK W VPV ++L LT+P+ SPSEW+RFYRSANIALCPL L+Y+CKSF+PL+HP++FL P+ H PLW ++L G+SSL+++HY VEK PPK+EQ+PIV+ F+MSV WIST+AGELLNCLAALGSLL++P +LLGLTVLAWGNSVGDLV DVAVAKAGQPAMAMAGCFAGPMFNMLFGLG+ALVIQT +VYP+AYEL FHVSIVVAF+FL+LSLMGSLLVVTWCRF+VPR WGFCLVGLY+ FI +SL+IAK
Sbjct: 38 PTTQIHRRSLLNTTTTTTCSHILQIPQDRRCSFSTLHCSAHSNGLLNYFSFHFCHFNQNPFLSVPFLSLTVVLQFYILVKTAQDQFSVVVTKLSTHLNLSPSMGAVTLLALGNGAPDVFASVAAVGGGNPRTGFGAILSAGTFVSALVVGFVAIYAAPFAVSPAPFIRDVLFYLTAALFLFYVYLSAEIYLWQAVGFVGFYLFFVGFVFWMDLGMDSGGKLKRGGSEVQDHKGSMEIDPENGSNSMDFTKKKTTSGIRQAFNKISKTWDVPVRVMLNLTIPQSSPSEWNRFYRSANIALCPLALMYSCKSFIPLNHPISFLFPNIHLPLWLILLFGTSSLSLVHYIVEKKPPKTEQLPIVLMGFIMSVCWISTMAGELLNCLAALGSLLEVPHSLLGLTVLAWGNSVGDLVTDVAVAKAGQPAMAMAGCFAGPMFNMLFGLGSALVIQTFNVYPEAYELEFHVSIVVAFVFLVLSLMGSLLVVTWCRFQVPRFWGFCLVGLYVFFITLSLLIAK 551
BLAST of XM_017368490.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6Q1E8 ((Uncharacterized protein {ECO:0000313|EMBL:KAD7478382.1}))
HSP 1 Score: 725.317 bits (1871), Expect = 0.000e+0
Identity = 367/533 (68.86%), Postives = 435/533 (81.61%), Query Frame = 0
Match: A0A5N6Q1E8 ((Uncharacterized protein {ECO:0000313|EMBL:KAD7478382.1}))
HSP 1 Score: 725.317 bits (1871), Expect = 0.000e+0
Identity = 367/533 (68.86%), Postives = 435/533 (81.61%), Query Frame = 0
Query: 11 SLTILSTLLIFFINLSIPLKPPSQ--LPHRLLLNSPHQSCSSILDTPRLFRCQFSILHCSP-SNGLINYFSLHFCVFRETPFVSIAFLGLCVLLQFYVLVKTAQSRFSVVVTKLVGHLSLSDSMGAVTLLALGNGAPDVFASVAAVGGGQARTGFGAILSAGTFVSAFVVGFVAIYAAPFSVLPGQFVRDVLFYLTAALFLFYVYLSAEIYLWQAVGFVAFYLFFVGVVFWMDLGMGRGKGKGGGGEDVGKGSVEVVVE---NVRSFEEGKPRFGFGQAFDQVSKVWAVPVSLLLKLTVPEPSPSEWSRFYRSANIALCPLLLLYTCKSFMPLDHPVTFLLPSTHFPLWSVVLIGSSSLAVLHYTVEKDPPKSEQMPIVIAAFVMSVFWISTVAGELLNCLAALGSLLQLPPALLGLTVLAWGNSVGDLVADVAVAKAGQPAMAMAGCFAGPMFNMLFGLGTALVIQTASVYPKAYELHFHVSIVVAFIFLLLSLMGSLLVVTWCRFRVPRLWGFCLVGLYIVFIIVSLIIAK 537
S+ +L+T+++F I P PS + R LLN+ SCS IL P RC F+ +HCS SNGL+NYFS HFC F + F+SI FL + V+L FYVL+KTA +FSVVVTKL HL+LS SMGAVTLLALGNGAPDVFAS++AV GG ARTGFGAILSAGTFVSA VVGFVAIYAAPF+V P F+RDVLFYLTAALF+FYVYLSAEI+LWQA+GFVAFYLFFVG VFWMDLGM G GG D +E+ E N + F+ + F +AFD +SK W +P+S++LKLT+P+ SPSEW+RFYRSANIALCP+LL+Y+CKSF+P +H + FLLP+ HFPLW VVL SSS A++H+ +EK PPK+EQ+ I++ F+MSVFWIST+AGELL+CLAA+GSLL++PP+LLGLTVLAWGNSVGDLVADVAVAKAGQPAMAMAGCFAGPMFNMLFGLGTALVIQTA+VYP+AYEL FHVSIVVAF+FL+LSLMGSLLVVTWCRF VPR WGFCLVGLY+ FI +SL+IAK
Sbjct: 13 SVLLLTTVILFSI-FQFPHHHPSTTAVHRRSLLNA--TSCSHILQIPPNQRCSFATVHCSDHSNGLVNYFSFHFCHFNQNQFLSIPFLSVIVVLHFYVLIKTA-GQFSVVVTKLSDHLNLSPSMGAVTLLALGNGAPDVFASISAVAGGNARTGFGAILSAGTFVSALVVGFVAIYAAPFAVSPAPFIRDVLFYLTAALFMFYVYLSAEIFLWQAIGFVAFYLFFVGFVFWMDLGMDTGGKSKRGGADDHIVLIEIGSEIGSNSKDFDINQTGFRIRRAFDMISKFWEIPISIMLKLTIPQSSPSEWNRFYRSANIALCPILLMYSCKSFVPFNHSIVFLLPNIHFPLWLVVLFASSSFALVHFVLEKKPPKTEQVLIILIGFIMSVFWISTMAGELLDCLAAVGSLLEVPPSLLGLTVLAWGNSVGDLVADVAVAKAGQPAMAMAGCFAGPMFNMLFGLGTALVIQTANVYPEAYELQFHVSIVVAFVFLILSLMGSLLVVTWCRFYVPRFWGFCLVGLYVFFIALSLVIAK 541
BLAST of XM_017368490.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J6DT65 ((Uncharacterized protein {ECO:0000313|EMBL:KAF4349196.1}))
HSP 1 Score: 712.605 bits (1838), Expect = 0.000e+0
Identity = 362/531 (68.17%), Postives = 409/531 (77.02%), Query Frame = 0
Match: A0A7J6DT65 ((Uncharacterized protein {ECO:0000313|EMBL:KAF4349196.1}))
HSP 1 Score: 712.605 bits (1838), Expect = 0.000e+0
Identity = 362/531 (68.17%), Postives = 409/531 (77.02%), Query Frame = 0
Query: 27 IPLKPPSQ----LPHRLLLNSPHQ--SCSSILDTPRLFRCQFSILHCSPSNGLINYFSLHFCVFRETPFVSIAFLGLCVLLQFYVLVKTAQSRFSVVVTKLVGHLSLSDSMGAVTLLALGNGAPDVFASVAAVGGGQARTGFGAILSAGTFVSAFVVGFVAIYAAPFSVLPGQFVRDVLFYLTAALFLFYVYLSAEIYLWQAVGFVAFYLFFVGVVFWMDLGMGRGKGKGGG-----GE-------DVGKGSVEVVVENVRSFEEGKPRFGFGQAFDQVSKVWAVPVSLLLKLTVPEPSPSEWSRFYRSANIALCPLLLLYTCKSFMPLDHPVTFLLPSTHFPLWSVVLIGSSSLAVLHYTVEKDPPKSEQMPIVIAAFVMSVFWISTVAGELLNCLAALGSLLQLPPALLGLTVLAWGNSVGDLVADVAVAKAGQPAMAMAGCFAGPMFNMLFGLGTALVIQTASVYPKAYELHFHVSIVVAFIFLLLSLMGSLLVVTWCRFRVPRLWGFCLVGLYIVFIIVSLIIAKFS 539
IP PP+ +PHR LLN Q SCSS+ S SNGL NY S HFC+F + F+SI FL L ++L FY+L+KTAQ FSVV TKL HL+LS SM VTLLALGNGAPDVFASVAAV GQ RTGFGAILSAGTFVSA VVGFVAIYAAPFS+ P FVRDV FYL AALFLFYVYLSAEI+LWQAVGFV FYLFFVG VFWMDLGMG K KGG GE V + +V++N R KP G +A +SK W +PVS+LLKLT+P+ SP++WSRFY SANIALCPL LLY +F+P DHP+ FLLP T FPLW VV G S+LA+LH+ EK+PPK+E +P+VI AFVMSVFWISTVAGELLNCLAALGSLL+LPP++LGLTVLAWGNSVGDLVADVAVAKAG PAMAMAGCFAGPMFNML GLGTALVIQT+++YP+AYELHFH IV+AF+FLLLSLMGSLLV+TW RFRVPR WGFCLVGLY+VF VSL+IAKFS
Sbjct: 1040 IPSNPPAPSTPLIPHRSLLNDNTQELSCSSVK---------------SHSNGLFNYLSFHFCLFNKNSFLSIPFLSLLLVLHFYILIKTAQDHFSVVTTKLSFHLNLSPSMAGVTLLALGNGAPDVFASVAAVRRGQYRTGFGAILSAGTFVSALVVGFVAIYAAPFSLKPAPFVRDVSFYLIAALFLFYVYLSAEIFLWQAVGFVLFYLFFVGFVFWMDLGMGAEKEKGGSEMHLIGEIDERKDLMVHDCEIGLVLQNSRG---EKPSSGLRRALRMISKSWEIPVSVLLKLTIPQTSPTKWSRFYSSANIALCPLALLYAGNTFVPFDHPIHFLLPHTRFPLWLVVFFGCSNLALLHFITEKEPPKTEHIPVVIIAFVMSVFWISTVAGELLNCLAALGSLLELPPSILGLTVLAWGNSVGDLVADVAVAKAGHPAMAMAGCFAGPMFNMLIGLGTALVIQTSNIYPEAYELHFHTGIVMAFVFLLLSLMGSLLVITWHRFRVPRFWGFCLVGLYVVFTAVSLVIAKFS 1552
BLAST of XM_017368490.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6N2C385 ((Uncharacterized protein {ECO:0000313|EMBL:TMX00779.1}))
HSP 1 Score: 712.22 bits (1837), Expect = 0.000e+0
Identity = 383/549 (69.76%), Postives = 441/549 (80.33%), Query Frame = 0
Match: A0A6N2C385 ((Uncharacterized protein {ECO:0000313|EMBL:TMX00779.1}))
HSP 1 Score: 712.22 bits (1837), Expect = 0.000e+0
Identity = 383/549 (69.76%), Postives = 441/549 (80.33%), Query Frame = 0
Query: 10 ISLTILSTLLIFFINL------SIPLKPPSQLPHRLLLNSPHQSCSSILDTPRLFRCQFSILHCSPSNGLINYFSLHFCVFRETPFVSIAFLGLCVLLQFYVLVKTAQSRFSVVVTKLVGHLSLSDSMGAVTLLALGNGAPDVFASVAAVGGGQARTGFGAILSAGTFVSAFVVGFVAIYAAPFSVLPGQFVRDVLFYLTAALFLFYVYLSAEIYLWQAVGFVAFYLFFVGVVFWMDLGMGRGKGKGG--GGE-------DVGKGSVEVVVENVR---SFEEGKPRF-GFGQAFDQVSKVWAVPVSLLLKLTVPEPSPSEWSRFYRSANIALCPLLLLYTCKSFMPLDHPVTFLLPSTHFPLWSVVLIGSSSLAVLHYTVEKDPPKSEQMPIVIAAFVMSVFWISTVAGELLNCLAALGSLLQLPPALLGLTVLAWGNSVGDLVADVAVAKAGQPAMAMAGCFAGPMFNMLFGLGTALVIQTASVYPKAYELHFHVSIVVAFIFLLLSLMGSLLVVTWCRFRVPRLWGFCLVGLYIVFIIVSLIIAKFS 539
ISL ++ T+L FFI L S P+ +PHR LLN+ + + + F C S + + SNG+ NYFSLH+C+F+E PF+SI F LCV LQFY+L+KTAQ FSVVVTKL HL LS SMGAVTLLALGNGAPDVFASVAAV GGQARTGFGAILSAGTFVSAFVVGFVAIYAAPF+V P FVRDV+FYLTAALFLFYVYLSAEI+LWQA+GFVAFYLFFVG VFWMDLGMG K KGG GGE +V G VE E + + E+GK G F +VS +W +PVS+LL+LT+P+ +PSEW+RFY SANIALCPLLLL++CKSF+PL+HP++FLL TH PLW +VL + SLAV+H+ VEK+ PK+EQMP V+ AFVMSVFWISTVAGELLNCLA LG LL+LP A LGLTVLAWGNSVGDLVADVAVAKAGQPAMAMAGCFAGPMFNMLFGLGTALV+QTA+VYP+AYELH HVSIVVAF+FLLLSLMGSLL+VTW RFRVPR WGFCLVGLY+VF+++SLIIA FS
Sbjct: 13 ISLILIITVLFFFIVLPLPQYSSNPIHKSPLIPHRFLLNA-----TILEEKSDHFVCSTS--NFTDSNGIFNYFSLHYCLFQENPFLSIPFFALCVFLQFYILIKTAQDYFSVVVTKLSTHLRLSPSMGAVTLLALGNGAPDVFASVAAVRGGQARTGFGAILSAGTFVSAFVVGFVAIYAAPFAVDPAPFVRDVMFYLTAALFLFYVYLSAEIFLWQAIGFVAFYLFFVGFVFWMDLGMGGAKEKGGKFGGEVGLVRSDEVHIGIVEFDSEKGKVMGTLEDGKRHTTGSSHLFGKVSLIWKLPVSMLLRLTIPQTAPSEWNRFYLSANIALCPLLLLFSCKSFVPLNHPISFLLSDTHLPLWFIVLCATCSLAVVHFIVEKEAPKTEQMPAVVIAFVMSVFWISTVAGELLNCLAILGELLKLPAAFLGLTVLAWGNSVGDLVADVAVAKAGQPAMAMAGCFAGPMFNMLFGLGTALVMQTANVYPEAYELHLHVSIVVAFVFLLLSLMGSLLLVTWNRFRVPRFWGFCLVGLYVVFMVISLIIATFS 554
BLAST of XM_017368490.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8BLU1 ((cation/calcium exchanger 5 {ECO:0000313|RefSeq:XP_010278282.1}))
HSP 1 Score: 711.835 bits (1836), Expect = 0.000e+0
Identity = 376/519 (72.45%), Postives = 424/519 (81.70%), Query Frame = 0
Match: A0A1U8BLU1 ((cation/calcium exchanger 5 {ECO:0000313|RefSeq:XP_010278282.1}))
HSP 1 Score: 711.835 bits (1836), Expect = 0.000e+0
Identity = 376/519 (72.45%), Postives = 424/519 (81.70%), Query Frame = 0
Query: 30 KPPSQLPHRLLLNSPHQSCSSILDTPRLFRCQFSILHCS-PSNGLINYFSLHFCVFRETPFVSIAFLGLCVLLQFYVLVKTAQSRFSVVVTKLVGHLSLSDSMGAVTLLALGNGAPDVFASVAAVGGGQARTGFGAILSAGTFVSAFVVGFVAIYAAPFSVLPGQFVRDVLFYLTAALFLFYVYLSAEIYLWQAVGFVAFYLFFVGVVFWMDLGMGRGKGKGGGGE-----DVGKGSVEVVVEN---VRSFEEGKPRFGFGQAFDQVSKVWAVPVSLLLKLTVPEPSPSEWSRFYRSANIALCPLLLLYTCKSFMPLDHPVTFLLPSTHFPLWSVVLIGSSSLAVLHYTVEKDPPKSEQMPIVIAAFVMSVFWISTVAGELLNCLAALGSLLQLPPALLGLTVLAWGNSVGDLVADVAVAKAGQPAMAMAGCFAGPMFNMLFGLGTALVIQTASVYPKAYELHFHVSIVVAFIFLLLSLMGSLLVVTWCRFRVPRLWGFCLVGLYIVFIIVSLIIAKFS 539
P S +PHR LLN SCSSIL P RC FSI HC SNGL NY SLHFCVF E F+SI L L +LLQFY+LVKTAQ RFS+VVTKL L+LS SMGAVTLLALGNGAPDVFASVAAV GG RTGFGAILSAGTFVSAFVVGFVAIYAAPFSV P FVRDV FYL AAL+LF VYLSAEI+LWQA+GFV FY+FFVG VFWMD+G+ RG+ KG E +V KG + E + + E KP G A ++S+VW VPVS+LLKLT+P+ +PSEWSRFY SANIALCPL LLYTC S +PLD+ + FLLP THFPLW +VL+ SSSLAVLHY +EK+PP++EQMP+V+ AF+MSVFWISTVAGELL+CLAA+G++L+LPPALLGLTVLAWGNSVGDLVADVAVAKAGQPAMAMAGCFAGPMFNML GLGTALV+QTA VYP AYEL FH+SIVVAF+FLL SLMGSLLVVTW RFRVPR WGFCL+GLY +FI+VSL+IAKFS
Sbjct: 36 HPTSIIPHRSLLNQSSPSCSSILQIPPHRRCSFSISHCGGDSNGLFNYSSLHFCVFGENRFLSIPCLALILLLQFYILVKTAQDRFSIVVTKLATLLNLSPSMGAVTLLALGNGAPDVFASVAAVRGGHPRTGFGAILSAGTFVSAFVVGFVAIYAAPFSVDPAPFVRDVFFYLIAALWLFSVYLSAEIFLWQAIGFVGFYIFFVGFVFWMDVGIERGR-KGDEAEMSLVGEVQKGLIRSDCEYGEVMLNVEREKPSLGLLGALGKISRVWEVPVSILLKLTIPQTAPSEWSRFYLSANIALCPLALLYTCSSIIPLDYXIVFLLPQTHFPLWLIVLVASSSLAVLHYVIEKEPPETEQMPVVLVAFMMSVFWISTVAGELLDCLAAVGAILELPPALLGLTVLAWGNSVGDLVADVAVAKAGQPAMAMAGCFAGPMFNMLVGLGTALVMQTADVYPLAYELRFHISIVVAFVFLLSSLMGSLLVVTWFRFRVPRFWGFCLIGLYSLFIMVSLVIAKFS 553
BLAST of XM_017368490.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A822YS30 ((Uncharacterized protein {ECO:0000313|EMBL:DAD33586.1}))
HSP 1 Score: 711.449 bits (1835), Expect = 0.000e+0
Identity = 376/519 (72.45%), Postives = 424/519 (81.70%), Query Frame = 0
Match: A0A822YS30 ((Uncharacterized protein {ECO:0000313|EMBL:DAD33586.1}))
HSP 1 Score: 711.449 bits (1835), Expect = 0.000e+0
Identity = 376/519 (72.45%), Postives = 424/519 (81.70%), Query Frame = 0
Query: 30 KPPSQLPHRLLLNSPHQSCSSILDTPRLFRCQFSILHCS-PSNGLINYFSLHFCVFRETPFVSIAFLGLCVLLQFYVLVKTAQSRFSVVVTKLVGHLSLSDSMGAVTLLALGNGAPDVFASVAAVGGGQARTGFGAILSAGTFVSAFVVGFVAIYAAPFSVLPGQFVRDVLFYLTAALFLFYVYLSAEIYLWQAVGFVAFYLFFVGVVFWMDLGMGRGKGKGGGGE-----DVGKGSVEVVVEN---VRSFEEGKPRFGFGQAFDQVSKVWAVPVSLLLKLTVPEPSPSEWSRFYRSANIALCPLLLLYTCKSFMPLDHPVTFLLPSTHFPLWSVVLIGSSSLAVLHYTVEKDPPKSEQMPIVIAAFVMSVFWISTVAGELLNCLAALGSLLQLPPALLGLTVLAWGNSVGDLVADVAVAKAGQPAMAMAGCFAGPMFNMLFGLGTALVIQTASVYPKAYELHFHVSIVVAFIFLLLSLMGSLLVVTWCRFRVPRLWGFCLVGLYIVFIIVSLIIAKFS 539
P S +PHR LLN SCSSIL P RC FSI HC SNGL NY SLHFCVF E F+SI L L +LLQFY+LVKTAQ RFS+VVTKL L+LS SMGAVTLLALGNGAPDVFASVAAV GG RTGFGAILSAGTFVSAFVVGFVAIYAAPFSV P FVRDV FYL AAL+LF VYLSAEI+LWQA+GFV FY+FFVG VFWMD+G+ RG+ KG E +V KG + E + + E KP G A ++S+VW VPVS+LLKLT+P+ +PSEWSRFY SANIALCPL LLYTC S +PLD+ + FLLP THFPLW +VL+ SSSLAVLHY +EK+PP++EQMP+V+ AF+MSVFWISTVAGELL+CLAA+G++L+LPPALLGLTVLAWGNSVGDLVADVAVAKAGQPAMAMAGCFAGPMFNML GLGTALV+QTA VYP AYEL FH+SIVVAF+FLL SLMGSLLVVTW RFRVPR WGFCL+GLY +FI+VSL+IAKFS
Sbjct: 36 HPTSIIPHRSLLNQSSPSCSSILQIPPHRRCSFSISHCGGDSNGLFNYSSLHFCVFGENRFLSIPCLALILLLQFYILVKTAQDRFSIVVTKLATLLNLSPSMGAVTLLALGNGAPDVFASVAAVRGGHPRTGFGAILSAGTFVSAFVVGFVAIYAAPFSVDPAPFVRDVFFYLIAALWLFSVYLSAEIFLWQAIGFVGFYIFFVGFVFWMDVGIERGR-KGDEAEMSLVGEVQKGLIRSDCEYGEVMLNVEREKPSLGLLGALGKISRVWEVPVSILLKLTIPQTAPSEWSRFYLSANIALCPLALLYTCSSIIPLDYRIVFLLPQTHFPLWLIVLVASSSLAVLHYVIEKEPPETEQMPVVLVAFMMSVFWISTVAGELLDCLAAVGAILELPPALLGLTVLAWGNSVGDLVADVAVAKAGQPAMAMAGCFAGPMFNMLVGLGTALVMQTADVYPLAYELRFHISIVVAFVFLLSSLMGSLLVVTWFRFRVPRFWGFCLIGLYSLFIMVSLVIAKFS 553
BLAST of XM_017368490.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7C2L7 ((Putative cation/calcium exchanger 5 {ECO:0000313|EMBL:MPA75399.1}))
HSP 1 Score: 710.679 bits (1833), Expect = 0.000e+0
Identity = 412/555 (74.23%), Postives = 456/555 (82.16%), Query Frame = 0
Match: A0A5B7C2L7 ((Putative cation/calcium exchanger 5 {ECO:0000313|EMBL:MPA75399.1}))
HSP 1 Score: 710.679 bits (1833), Expect = 0.000e+0
Identity = 412/555 (74.23%), Postives = 456/555 (82.16%), Query Frame = 0
Query: 1 MALSLYSLP---ISLTILSTLLIFFINLSIPLKPPSQ--LPHRLLLNSPHQSCSSILDTPRLFRCQFSILHCS-PSNGLINYFSLHFCVFRETPFVSIAFLGLCVLLQFYVLVKTAQSRFSVVVTKLVGHLSLSDSMGAVTLLALGNGAPDVFASVAAVGGGQARTGFGAILSAGTFVSAFVVGFVAIYAAPFSVLPGQFVRDVLFYLTAALFLFYVYLSAEIYLWQAVGFVAFYLFFVGVVFWMDLGMGRGKGKGG------GGEDVGKGSVEVVVEN---VRSFEEGKPRFGFGQAFDQVSKVWAVPVSLLLKLTVPEPSPSEWSRFYRSANIALCPLLLLYTCKSFMPLDHPVTFLLPSTHFPLWSVVLIGSSSLAVLHYTVEKDPPKSEQMPIVIAAFVMSVFWISTVAGELLNCLAALGSLLQLPPALLGLTVLAWGNSVGDLVADVAVAKAGQPAMAMAGCFAGPMFNMLFGLGTALVIQTASVYPKAYELHFHVSIVVAFIFLLLSLMGSLLVVTWCRFRVPRLWGFCLVGLYIVFIIVSLIIAKFSI 540
MA+SL SL ISL +LSTL F + S P P + +PHR LLN+ QSCSSIL P RC FS+LHCS SNGL+NY+SLHFC+F E P +SI FL L VLLQFY+LVKTAQ RFSVVVTKL L+LS SM AVTLLALGNGAPDVFASVAAV GG RTGFGAILSAGTFVSAFVVGFVAIYAAPFSV P FVRDVLFY AALFLFY YLSAEI+LWQA+GFV FYLFFVG+VFWMD GM GKGK G G +V KG + E + E K FGF QA Q+SK W +PVS+LLKLT+P+ SPSEWSRFY+SA+IALCPL LLY+C SFMPL+HP+ FLLP+THFPLW VVL SSSLAVLH+ VEK+PPK+EQMP+V+ AFVMSVFWISTVAGELLNCLAALG+LL+LPPALLGLTVLAWGNSVGDLVADVAVAKAGQPAMAMAGCFA PMFNMLFGLGTALV+QTA+VYP AYELHFHVSIVVAF+FLLLSLMGS+LVVTW RFRVPR WGFCLVGLYIVF+ VSL+IAKFS+
Sbjct: 1 MAISLPSLKTSAISLILLSTLFFFVLRPS-PNHPSTNPVIPHRSLLNTTTQSCSSILQIPPHQRCSFSLLHCSGDSNGLLNYYSLHFCIFHENPSLSIPFLSLTVLLQFYILVKTAQDRFSVVVTKLSSLLNLSPSMAAVTLLALGNGAPDVFASVAAVRGGHPRTGFGAILSAGTFVSAFVVGFVAIYAAPFSVDPAPFVRDVLFYFIAALFLFYAYLSAEIFLWQAIGFVGFYLFFVGIVFWMDFGMAGGKGKSGSEVSFVGDVEVHKGLMASDCEKGEMLGKVEGVKLGFGFRQALGQISKAWELPVSVLLKLTIPQTSPSEWSRFYQSASIALCPLALLYSCNSFMPLNHPIIFLLPNTHFPLWLVVLFASSSLAVLHFIVEKEPPKTEQMPVVLLAFVMSVFWISTVAGELLNCLAALGALLKLPPALLGLTVLAWGNSVGDLVADVAVAKAGQPAMAMAGCFACPMFNMLFGLGTALVMQTANVYPNAYELHFHVSIVVAFVFLLLSLMGSMLVVTWYRFRVPRFWGFCLVGLYIVFMAVSLVIAKFSV 554
BLAST of XM_017368490.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A3Q7F7L2 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc01g098800.3.1}))
HSP 1 Score: 706.057 bits (1821), Expect = 0.000e+0
Identity = 380/549 (69.22%), Postives = 440/549 (80.15%), Query Frame = 0
Match: A0A3Q7F7L2 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc01g098800.3.1}))
HSP 1 Score: 706.057 bits (1821), Expect = 0.000e+0
Identity = 380/549 (69.22%), Postives = 440/549 (80.15%), Query Frame = 0
Query: 10 ISLTILSTLLIFFINL------SIPLKPPSQLPHRLLLNSPHQSCSSILDTPRLFRCQFSILHCSPSNGLINYFSLHFCVFRETPFVSIAFLGLCVLLQFYVLVKTAQSRFSVVVTKLVGHLSLSDSMGAVTLLALGNGAPDVFASVAAVGGGQARTGFGAILSAGTFVSAFVVGFVAIYAAPFSVLPGQFVRDVLFYLTAALFLFYVYLSAEIYLWQAVGFVAFYLFFVGVVFWMDLGMGRGKGKGG--GGE-------DVGKGSVEVVVENVR---SFEEG-KPRFGFGQAFDQVSKVWAVPVSLLLKLTVPEPSPSEWSRFYRSANIALCPLLLLYTCKSFMPLDHPVTFLLPSTHFPLWSVVLIGSSSLAVLHYTVEKDPPKSEQMPIVIAAFVMSVFWISTVAGELLNCLAALGSLLQLPPALLGLTVLAWGNSVGDLVADVAVAKAGQPAMAMAGCFAGPMFNMLFGLGTALVIQTASVYPKAYELHFHVSIVVAFIFLLLSLMGSLLVVTWCRFRVPRLWGFCLVGLYIVFIIVSLIIAKFS 539
ISL ++ T+L FFI L S P+ +PHR LLN+ + + + F C S + + SNG+ NYFSLH+C+F+E PF+SI F LCV LQFY+L+KTAQ FSVVVTKL HL LS SMGAVTLLALGNGAPDVFASVAAV GGQARTGFGAILSAGTFVSAFVVGFVAIYAAPF+V P FVRDV+FYLTAALFLFYVYLSAEI+LWQA+GFVAFY+FFVG VFWMDLGMG K KGG GGE +V G VE E + + E+G + G F +VS +W +PVS+LL+LT+P+ +PSEW+RF S+NIALCPLLLL++CKSF+PL+HP++FLL TH PLW +VL + SLAV+H+ VEK+ PK+EQMP V+ AFVMSVFWISTVAGELLNCLA LG LL+LP A LGLTVLAWGNSVGDLVADVAVAKAGQPAMAMAGCFAGPMFNMLFGLGTALV+QTA+VYP+AYELH HVSIVVAF+FLLLSLMGSLL+VTW RFRVPR WGFCLVGLY+VF+I+SLIIA FS
Sbjct: 13 ISLILIITVLFFFIVLPLPQYSSNPIHKSPLIPHRFLLNA-----TILEEKSDHFVCSTS--NFTDSNGIFNYFSLHYCLFQENPFLSIPFFALCVFLQFYILIKTAQDYFSVVVTKLSTHLRLSPSMGAVTLLALGNGAPDVFASVAAVRGGQARTGFGAILSAGTFVSAFVVGFVAIYAAPFAVDPAPFVRDVMFYLTAALFLFYVYLSAEIFLWQAIGFVAFYIFFVGFVFWMDLGMGGAKEKGGKFGGEVGLVRSDEVHIGIVEFDSEKGKVMGTLEDGNRHTTGSSHLFGKVSLIWKLPVSMLLRLTIPQTAPSEWNRFCLSSNIALCPLLLLFSCKSFVPLNHPISFLLSDTHLPLWFIVLCATCSLAVVHFIVEKEAPKTEQMPAVVIAFVMSVFWISTVAGELLNCLAVLGELLKLPAAFLGLTVLAWGNSVGDLVADVAVAKAGQPAMAMAGCFAGPMFNMLFGLGTALVMQTANVYPEAYELHLHVSIVVAFVFLLLSLMGSLLLVTWNRFRVPRFWGFCLVGLYVVFMIISLIIATFS 554
| Match Name | Stats | Description |
|---|---|---|
| A0A103YG55 | E-Value: 0.000e+0, PID: 73.13 | (Sodium/calcium exchanger membrane region {ECO:000... [more] |
| A0A5J5BSP0 | E-Value: 0.000e+0, PID: 74.73 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8545... [more] |
| A0A2J6LJE6 | E-Value: 0.000e+0, PID: 72.37 | (Uncharacterized protein {ECO:0000313|EMBL:PLY8745... [more] |
| A0A5N6Q1E8 | E-Value: 0.000e+0, PID: 68.86 | (Uncharacterized protein {ECO:0000313|EMBL:KAD7478... [more] |
| A0A7J6DT65 | E-Value: 0.000e+0, PID: 68.17 | (Uncharacterized protein {ECO:0000313|EMBL:KAF4349... [more] |
| A0A6N2C385 | E-Value: 0.000e+0, PID: 69.76 | (Uncharacterized protein {ECO:0000313|EMBL:TMX0077... [more] |
| A0A1U8BLU1 | E-Value: 0.000e+0, PID: 72.45 | (cation/calcium exchanger 5 {ECO:0000313|RefSeq:XP... [more] |
| A0A822YS30 | E-Value: 0.000e+0, PID: 72.45 | (Uncharacterized protein {ECO:0000313|EMBL:DAD3358... [more] |
| A0A5B7C2L7 | E-Value: 0.000e+0, PID: 74.23 | (Putative cation/calcium exchanger 5 {ECO:0000313|... [more] |
| A0A3Q7F7L2 | E-Value: 0.000e+0, PID: 69.22 | (Uncharacterized protein {ECO:0000313|EnsemblPlant... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |