XM_017371097.1

Resource Type: 
Polypeptide
Name: 
XM_017371097.1
Identifier: 
XM_017371097.1-protein
Sequence: 
MAIDTVPMEDIIARASRLGINLNDVKMDSIHLPPGQDFGILSDDEDLNEE
DSLEFEGGFGNIIVVDNLPVVPKEKFEKLEGVVKKIYSQIGVIKDDGLWM
PVDPATQKTLGYCFIEYNTPQKEAELAKEKTNGYKLDRAHIFAVNMFDEI
EKFMKVPDEWAPPETKPYTPGENLQHWLTDEKARDQFVIRAGSDTEVLWN
DARQLKADPVYKRNFWTESYVQWSPLGTYLATVHRQGAAVWGGASTFNRL
MRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDSHRVVLNIFDVRTGKIM
RDFKGSADDFAIGGTGGFAGVSWPVFRWSGGKDDKYFARMGKNVISVYET
DTFTLIDKKSIKVENVMDFSWSPTDPIFALFVPELGGGNQPARVSLIQIP
GKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRI
KERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDISFYSMRS
GTNTGRVSKLTTLKGKQANALFWSPGGRFIILAGLKGFNGQLEFYNVDDL
ETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFHGKLLYRI
MKDHFFQFLWRPRPPSFLSPEKEEEIAKNLKKYSKKYEAEDQDVSLLLSE
QEREKRKKLKEEWEMWVSQWKKWHDEEKLERQRLRDGEASDEEEEYEAKE
VEVEEVLDIKEEVLSLDYGQE
Sequence Length: 
721
Sequence Checksum: 
db21b5ce52b72a5764bc03dcb22605f2
View location in JBrowse: 
DCARv2_Chr9:8566816..8571628-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017371097.1, derives from mRNA, XM_017371097.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017371097.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017371097.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZQT7 (Eukaryotic translation initiation factor 3 subunit B {ECO:0000256|HAMAP-Rule:MF_03001, ECO:0000256|PIRNR:PIRNR036424} (eIF3b {ECO:0000256|HAMAP-Rule:MF_03001, ECO:0000256|PIRNR:PIRNR036424}) (eIF-3-eta {ECO:0000256|HAMAP-Rule:MF_03001}) (eIF3 p110 {ECO:0000256|HAMAP-Rule:MF_03001}))

HSP 1 Score: 1307.35 bits (3382), Expect = 0.000e+0
Identity = 635/718 (88.44%), Postives = 687/718 (95.68%), Query Frame = 0
 
Query:    4 DTVPMEDIIARASRLGINLNDVKMDSIHLPPGQDFGILSDDEDLNEEDSLEFEGGFGNIIVVDNLPVVPKEKFEKLEGVVKKIYSQIGVIKDDGLWMPVDPATQKTLGYCFIEYNTPQKEAELAKEKTNGYKLDRAHIFAVNMFDEIEKFMKVPDEWAPPETKPYTPGENLQHWLTDEKARDQFVIRAGSDTEVLWNDARQLKADPVYKRNFWTESYVQWSPLGTYLATVHRQGAAVWGGASTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDSHRVVLNIFDVRTGKIMRDFKGSADDFAIGGTGGFAGVSWPVFRWSGGKDDKYFARMGKNVISVYETDTFTLIDKKSIKVENVMDFSWSPTDPIFALFVPELGGGNQPARVSLIQIPGKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDISFYSMRSGTNTGRVSKLTTLKGKQANALFWSPGGRFIILAGLKGFNGQLEFYNVDDLETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFHGKLLYRIMKDHFFQFLWRPRPPSFLSPEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQEREKRKKLKEEWEMWVSQWKKWHDEEKLERQRLRDGEASDEEEEYEAKEVEVEEVLDIKEEVLSLDYGQE 721
            + + ME+I   ASRLGI+L++V +DSI LPPG+DFGI SDD+DLNEED LEF+ GFGNIIVVDNLPVVPKEKFEKLEGVV+KIYSQIG IK+DGLWMPVDPATQKTLGYCFIEYNTPQ EAE+AKEKTN YKLDR+HIFAVN+FD+IEKFMKVPDEWAPPETKPYTPGENLQHWLTD+KARDQFVIRAGSDTEVLWNDAR LK +PVYKR+FWTES+VQWSPLGTYLATVHRQGAAVWGGA++FNRLMRYAHPQVKLIDFSPGE++LVTYSSHEPSNPRD+HRVVLNIFDVRTGK+MRDFKGSAD+FAIGGTGG AGVSWPVFRW GGKDDKYFAR+GKNVISVYET+TFTLIDKKS+K ENVMDF+WSPTDPI +L+VPELGGGNQPARVSL+QIP K ELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGD+PRPDISFYSMRS  N GRVSK+ TLKGKQANAL+WSP GRF+ILAGLKGFNGQLEF+NVD+LETMATAEHFMATDIEWDPTGRYVAT+VTSVHEMENGFNIWSF+GKLLYRI+KDHFFQFLWRPRPPSFLSPEKEEEIAKNLKKYSKKYEAEDQDVS+LLSEQ+REKRK LK+EWE WVS+WK+ H+EEKLERQRLRDGEASDEEEEYEAKEVEVEE+LDI EEVLS ++GQE
Sbjct:    3 EVMSMEEIRTTASRLGIDLSEVDLDSIRLPPGEDFGIRSDDDDLNEEDPLEFDAGFGNIIVVDNLPVVPKEKFEKLEGVVRKIYSQIGAIKEDGLWMPVDPATQKTLGYCFIEYNTPQ-EAEIAKEKTNLYKLDRSHIFAVNLFDDIEKFMKVPDEWAPPETKPYTPGENLQHWLTDDKARDQFVIRAGSDTEVLWNDARHLKPEPVYKRSFWTESFVQWSPLGTYLATVHRQGAAVWGGATSFNRLMRYAHPQVKLIDFSPGERFLVTYSSHEPSNPRDTHRVVLNIFDVRTGKVMRDFKGSADEFAIGGTGGVAGVSWPVFRWGGGKDDKYFARIGKNVISVYETETFTLIDKKSLKAENVMDFNWSPTDPILSLYVPELGGGNQPARVSLVQIPSKVELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRSTNNMGRVSKVATLKGKQANALYWSPAGRFVILAGLKGFNGQLEFFNVDELETMATAEHFMATDIEWDPTGRYVATSVTSVHEMENGFNIWSFNGKLLYRILKDHFFQFLWRPRPPSFLSPEKEEEIAKNLKKYSKKYEAEDQDVSMLLSEQDREKRKMLKDEWERWVSEWKRLHEEEKLERQRLRDGEASDEEEEYEAKEVEVEELLDISEEVLSFEFGQE 719
[Close]
BLAST of XM_017371097.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P4AEY0 (Eukaryotic translation initiation factor 3 subunit B {ECO:0000256|HAMAP-Rule:MF_03001, ECO:0000256|PIRNR:PIRNR036424} (eIF3b {ECO:0000256|HAMAP-Rule:MF_03001, ECO:0000256|PIRNR:PIRNR036424}) (eIF-3-eta {ECO:0000256|HAMAP-Rule:MF_03001}) (eIF3 p110 {ECO:0000256|HAMAP-Rule:MF_03001}))

HSP 1 Score: 1296.57 bits (3354), Expect = 0.000e+0
Identity = 628/718 (87.47%), Postives = 682/718 (94.99%), Query Frame = 0
 
Query:    4 DTVPMEDIIARASRLGINLNDVKMDSIHLPPGQDFGILSDDEDLNEEDSLEFEGGFGNIIVVDNLPVVPKEKFEKLEGVVKKIYSQIGVIKDDGLWMPVDPATQKTLGYCFIEYNTPQKEAELAKEKTNGYKLDRAHIFAVNMFDEIEKFMKVPDEWAPPETKPYTPGENLQHWLTDEKARDQFVIRAGSDTEVLWNDARQLKADPVYKRNFWTESYVQWSPLGTYLATVHRQGAAVWGGASTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDSHRVVLNIFDVRTGKIMRDFKGSADDFAIGGTGGFAGVSWPVFRWSGGKDDKYFARMGKNVISVYETDTFTLIDKKSIKVENVMDFSWSPTDPIFALFVPELGGGNQPARVSLIQIPGKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDISFYSMRSGTNTGRVSKLTTLKGKQANALFWSPGGRFIILAGLKGFNGQLEFYNVDDLETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFHGKLLYRIMKDHFFQFLWRPRPPSFLSPEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQEREKRKKLKEEWEMWVSQWKKWHDEEKLERQRLRDGEASDEEEEYEAKEVEVEEVLDIKEEVLSLDYGQE 721
            D + M+DI   A RLGI+L+ + ++SIHLPPG+DFGI+S+DED+ EED+LEF+ GFGNIIVVDNLPVV +EKFEKLEGV++KIYSQIGVIK+DGLWMP+DP TQKTLGYCFIEYNTPQ EAELAKEKT+GYKLDR+HIFAVNMFD+ ++FMKVPDEWAPPE  PYTPGENLQHWLTDEKARDQFVIRAGSDTEV WNDAR LK  PVY R FWTES+VQWSPLGTYLATVHRQGAAVWGGAS+FNRLMRYAHPQV+LIDFSPGEKYLVTYSSHEPSNPRD+ RVV+NIFDVRTGK+MRDFKG+ DDFAIGGTGG AG+SWPVF+W GG++DKYFAR+GKNV+SVYET+TF+LIDKKSIKVENVMDFSWSPTDPI A+FVPELGGGNQPARVSLIQIP KEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDISFYSMR+  NTGRVSKLTTLKGKQANALFWSP GRFIILAGLKGFNGQLEFYNVD+LETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSF+GKLLYRI+KDHFFQFLWRPRPPSFLSPEKEEEIAKNLKKYSKKYEAEDQDVS+LLSEQEREKR+ LKEEW+ W+S+WK+ HDEE+LERQ+LRDGEASDEEEEYEAKEVEVEE+LD+ EEVL L+YGQE
Sbjct:    3 DVMVMKDIEETAERLGIDLSQIDLNSIHLPPGEDFGIISNDEDIYEEDNLEFDSGFGNIIVVDNLPVVAREKFEKLEGVIRKIYSQIGVIKEDGLWMPIDPETQKTLGYCFIEYNTPQ-EAELAKEKTHGYKLDRSHIFAVNMFDDFDRFMKVPDEWAPPEFTPYTPGENLQHWLTDEKARDQFVIRAGSDTEVFWNDARHLKPAPVYNRPFWTESFVQWSPLGTYLATVHRQGAAVWGGASSFNRLMRYAHPQVRLIDFSPGEKYLVTYSSHEPSNPRDATRVVINIFDVRTGKVMRDFKGTPDDFAIGGTGGVAGLSWPVFKWGGGREDKYFARIGKNVVSVYETETFSLIDKKSIKVENVMDFSWSPTDPILAIFVPELGGGNQPARVSLIQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDISFYSMRTAQNTGRVSKLTTLKGKQANALFWSPSGRFIILAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRILKDHFFQFLWRPRPPSFLSPEKEEEIAKNLKKYSKKYEAEDQDVSMLLSEQEREKRRMLKEEWDKWISEWKRLHDEERLERQKLRDGEASDEEEEYEAKEVEVEELLDVSEEVLPLEYGQE 719
[Close]
BLAST of XM_017371097.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7H0M7 (Eukaryotic translation initiation factor 3 subunit B {ECO:0000256|HAMAP-Rule:MF_03001, ECO:0000256|PIRNR:PIRNR036424} (eIF3b {ECO:0000256|HAMAP-Rule:MF_03001, ECO:0000256|PIRNR:PIRNR036424}) (eIF-3-eta {ECO:0000256|HAMAP-Rule:MF_03001}) (eIF3 p110 {ECO:0000256|HAMAP-Rule:MF_03001}))

HSP 1 Score: 1290.4 bits (3338), Expect = 0.000e+0
Identity = 637/718 (88.72%), Postives = 686/718 (95.54%), Query Frame = 0
 
Query:    4 DTVPMEDIIARASRLGINLNDVKMDSIHLPPGQDFGILSDDEDLNEEDSLEFEGGFGNIIVVDNLPVVPKEKFEKLEGVVKKIYSQIGVIKDDGLWMPVDPATQKTLGYCFIEYNTPQKEAELAKEKTNGYKLDRAHIFAVNMFDEIEKFMKVPDEWAPPETKPYTPGENLQHWLTDEKARDQFVIRAGSDTEVLWNDARQLKADPVYKRNFWTESYVQWSPLGTYLATVHRQGAAVWGGASTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDSHRVVLNIFDVRTGKIMRDFKGSADDFAIGGTGGFAGVSWPVFRWSGGKDDKYFARMGKNVISVYETDTFTLIDKKSIKVENVMDFSWSPTDPIFALFVPELGGGNQPARVSLIQIPGKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDISFYSMRSGTNTGRVSKLTTLKGKQANALFWSPGGRFIILAGLKGFNGQLEFYNVDDLETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFHGKLLYRIMKDHFFQFLWRPRPPSFLSPEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQEREKRKKLKEEWEMWVSQWKKWHDEEKLERQRLRDGEASDEEEEYEAKEVEVEEVLDIKEEVLSLDYGQE 721
            +   ME+I A ASRLGI+L++V +D+I LPPG+D GI SDDEDLNE+D LEF+GGFGNIIVVDNLPVVPKEKFEKLEGV++KIYSQIGVIK+DGLWMP+DP++ KTLGYCFIEYNTPQ EAELA+EKT+ YKLDR HIFAVNMFD+IEKF+KVPDEWAPPETKPYTPGENLQ WLTDEKARDQFVIR+GSDTEVLWNDAR LK +PVYKR+FWTES+VQWSPLGTYLATVHRQGAAVWGGA+TFNRLMRYAHPQVKLIDFSPGE +LVTYSSHEPSNPRD+HRVVLNIFDVRTGK+MRDFKGSAD+FA+GGTGG  GVSWPVFRW GGKDDKYFAR+GKNVISVYET+TFTLIDKKSIKVENVMDFSWSPTDPI ALFVPELGGGNQPARVSLIQIP KEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGD+PRPDISFYSMRS +NTGRVSKLTTLKGKQANAL+WSP GRFIILAGLKGFNGQLEF+NVD+LETMATAEHFMATDIEWDPTGRYVAT+VTSVHEMENGFNIWSFHGKLLYRI+KDHFFQFLWRPRPP FLSPEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQ+REKRK LKEEWE W+++WK+ H+EE LERQ+LRDGEASDEEEEYEAKEVEVEE+LD+ EEVLS D+GQE
Sbjct:    3 EAASMEEIRATASRLGIDLSEVDLDTIRLPPGEDLGIKSDDEDLNEDDPLEFDGGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPIDPSSHKTLGYCFIEYNTPQ-EAELAREKTHNYKLDRFHIFAVNMFDDIEKFLKVPDEWAPPETKPYTPGENLQKWLTDEKARDQFVIRSGSDTEVLWNDARHLKPEPVYKRSFWTESFVQWSPLGTYLATVHRQGAAVWGGATTFNRLMRYAHPQVKLIDFSPGENFLVTYSSHEPSNPRDTHRVVLNIFDVRTGKVMRDFKGSADEFAVGGTGGVTGVSWPVFRWGGGKDDKYFARIGKNVISVYETETFTLIDKKSIKVENVMDFSWSPTDPILALFVPELGGGNQPARVSLIQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRSTSNTGRVSKLTTLKGKQANALYWSPAGRFIILAGLKGFNGQLEFFNVDELETMATAEHFMATDIEWDPTGRYVATSVTSVHEMENGFNIWSFHGKLLYRILKDHFFQFLWRPRPPPFLSPEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQDREKRKMLKEEWERWINEWKRLHEEEDLERQKLRDGEASDEEEEYEAKEVEVEELLDVSEEVLSFDFGQE 719
[Close]
BLAST of XM_017371097.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9TLB0 (Eukaryotic translation initiation factor 3 subunit B {ECO:0000256|HAMAP-Rule:MF_03001, ECO:0000256|PIRNR:PIRNR036424} (eIF3b {ECO:0000256|HAMAP-Rule:MF_03001, ECO:0000256|PIRNR:PIRNR036424}) (eIF-3-eta {ECO:0000256|HAMAP-Rule:MF_03001}) (eIF3 p110 {ECO:0000256|HAMAP-Rule:MF_03001}))

HSP 1 Score: 1279.62 bits (3310), Expect = 0.000e+0
Identity = 628/714 (87.96%), Postives = 680/714 (95.24%), Query Frame = 0
 
Query:    4 DTVPMEDIIARASRLGINLNDVKMDSIHLPPGQDFGILSDDEDLNEEDSLEFEGGFGNIIVVDNLPVVPKEKFEKLEGVVKKIYSQIGVIKDDGLWMPVDPATQKTLGYCFIEYNTPQKEAELAKEKTNGYKLDRAHIFAVNMFDEIEKFMKVPDEWAPPETKPYTPGENLQHWLTDEKARDQFVIRAGSDTEVLWNDARQLKADPVYKRNFWTESYVQWSPLGTYLATVHRQGAAVWGGASTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDSHRVVLNIFDVRTGKIMRDFKGSADDFAIGGTGGFAGVSWPVFRWSGGKDDKYFARMGKNVISVYETDTFTLIDKKSIKVENVMDFSWSPTDPIFALFVPELGGGNQPARVSLIQIPGKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDISFYSMRSGTNTGRVSKLTTLKGKQANALFWSPGGRFIILAGLKGFNGQLEFYNVDDLETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFHGKLLYRIMKDHFFQFLWRPRPPSFLSPEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQEREKRKKLKEEWEMWVSQWKKWHDEEKLERQRLRDGEASDEEEEYEAKEVEVEEVLDIKEEVLSLD 717
            D + MEDI A A+RL ++L+ + +  I LPP +DFGI+SDDEDL +E+SLEFE GFGNIIVVDNLPVVPKEKFEKLEGVV+KIYSQIGVIK+DGLWMPVDP TQKTLGYCFIEYNTPQ EAELAKEKTNGYKLDR+HIFAVNMFD+IEKFMKVP+EWAPPETKPYTPGENLQ WLTDEKARDQFVIRAG+DTEVLWNDARQ K + VYKR++WTES+VQWSPLGTYLATVHRQGAAVWGGA+TFNRLMRYAHPQVKLIDFSPGE++LVTYSSHEPSNPRD+HRVV+NIFDVRTGK+MRDFKGSAD+FA GGTGG +GVSWPVFRW GGKDDKYFAR+GKNVISVYET+TFTLIDKKSIKVENV+DFSWSPTDPI ALFVPELGGGNQPARVSL+QIP KEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPD+SFYSMRSGTN GRVSKLTTLKGKQANAL+WSP GRFIILAGLKGFNGQLEFYNVD+LETMA AEHFMATD+EWDPTGRYV TAVTSVHEMENGFN+WSF+GKLLYRI +DHFFQFLWRPRPPSFLSPEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQ+REKR+ LKEEW+ WVS+WK+ H+EEKLERQ+LRDGEASD+EEEYEAKEVE+EE+LD+ EEV+S D
Sbjct:    3 DVMSMEDIHATAARLNVDLSSLDLGPIRLPPAEDFGIVSDDEDLKKEESLEFEEGFGNIIVVDNLPVVPKEKFEKLEGVVRKIYSQIGVIKEDGLWMPVDPETQKTLGYCFIEYNTPQ-EAELAKEKTNGYKLDRSHIFAVNMFDDIEKFMKVPEEWAPPETKPYTPGENLQKWLTDEKARDQFVIRAGTDTEVLWNDARQSKPELVYKRSYWTESFVQWSPLGTYLATVHRQGAAVWGGATTFNRLMRYAHPQVKLIDFSPGERFLVTYSSHEPSNPRDTHRVVINIFDVRTGKVMRDFKGSADEFATGGTGGVSGVSWPVFRWGGGKDDKYFARIGKNVISVYETETFTLIDKKSIKVENVVDFSWSPTDPILALFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDVSFYSMRSGTNIGRVSKLTTLKGKQANALYWSPAGRFIILAGLKGFNGQLEFYNVDELETMAQAEHFMATDVEWDPTGRYVVTAVTSVHEMENGFNVWSFNGKLLYRIPRDHFFQFLWRPRPPSFLSPEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQDREKRRMLKEEWDRWVSEWKRLHEEEKLERQKLRDGEASDDEEEYEAKEVEIEELLDVSEEVISFD 715
[Close]
BLAST of XM_017371097.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5A7UC22 (Eukaryotic translation initiation factor 3 subunit B {ECO:0000256|HAMAP-Rule:MF_03001} (eIF3b {ECO:0000256|HAMAP-Rule:MF_03001}) (eIF-3-eta {ECO:0000256|HAMAP-Rule:MF_03001}) (eIF3 p110 {ECO:0000256|HAMAP-Rule:MF_03001}))

HSP 1 Score: 1279.62 bits (3310), Expect = 0.000e+0
Identity = 620/717 (86.47%), Postives = 670/717 (93.44%), Query Frame = 0
 
Query:    4 DTVPMEDIIARASRLGINLNDVKMDSIHLPPGQDFGILSDDEDLNEEDSLEFEGGFGNIIVVDNLPVVPKEKFEKLEGVVKKIYSQIGVIKDDGLWMPVDPATQKTLGYCFIEYNTPQKEAELAKEKTNGYKLDRAHIFAVNMFDEIEKFMKVPDEWAPPETKPYTPGENLQHWLTDEKARDQFVIRAGSDTEVLWNDARQLKADPVYKRNFWTESYVQWSPLGTYLATVHRQGAAVWGGASTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDSHRVVLNIFDVRTGKIMRDFKGSADDFAIGGTGGFAGVSWPVFRWSGGKDDKYFARMGKNVISVYETDTFTLIDKKSIKVENVMDFSWSPTDPIFALFVPELGGGNQPARVSLIQIPGKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDISFYSMRSGTNTGRVSKLTTLKGKQANALFWSPGGRFIILAGLKGFNGQLEFYNVDDLETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFHGKLLYRIMKDHFFQFLWRPRPPSFLSPEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQEREKRKKLKEEWEMWVSQWKKWHDEEKLERQRLRDGEASDEEEEYEAKEVEVEEVLDIKEEVLSLDYGQ 720
            D V M++I   A RLGI+L+ V  D+I LPPG+DFGI+SDDE++ +E+SLEF+ GFGNIIVVDNLPVVP EKFEKLEGVV+KI+ QIGVIKDDGLWMPVD  TQKTLGYCFIEY TPQ EAELAKEKT+GYKLDRAHIF VNMF++ ++FMKVPDEWAPPE  PYTPGENLQ WLTDEKARDQFVIRAGSDTEV WNDAR LK +PVYKR FWTES+VQWS LGTYLAT+HRQGAAVWGGA TFNRLMR+AH QVKLIDFSPGEKYLVTYSSHEPSNPRD++R+V+NIFDVRTGK+MRDFKGS DDFAIGGTGG AGVSWPVFRW GGKDDKYFAR+GKNVISVYET+TF+LIDKKS+KVENVMDF WSPTDPI ALFVPELGGGNQPARVSL+QIP KEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDISFYSMRS  N+GRVSKLTTLKGKQANALFWSP GRFIILAGLKGFNGQLEFYNVD+LETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSF+GKLLYRI+KDHFFQF WRPRPPSFLSPEKEEEIAKNLKKYSKKYEAEDQDVS+LLSEQERE+R+ LK+EW+ WV++WK+ H+EEKL RQ+LRDGEASDEEEEYEAKEVEVEE+LD+ EEVLS D+G 
Sbjct:    3 DVVLMKEIEETAGRLGIDLSQVDFDAIRLPPGEDFGIISDDEEVLQEESLEFDSGFGNIIVVDNLPVVPPEKFEKLEGVVRKIFGQIGVIKDDGLWMPVDHTTQKTLGYCFIEYGTPQ-EAELAKEKTDGYKLDRAHIFTVNMFEDFDRFMKVPDEWAPPEVSPYTPGENLQQWLTDEKARDQFVIRAGSDTEVFWNDARHLKPEPVYKRTFWTESFVQWSSLGTYLATIHRQGAAVWGGAGTFNRLMRFAHQQVKLIDFSPGEKYLVTYSSHEPSNPRDANRIVINIFDVRTGKVMRDFKGSPDDFAIGGTGGVAGVSWPVFRWGGGKDDKYFARIGKNVISVYETETFSLIDKKSLKVENVMDFCWSPTDPIIALFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDISFYSMRSTNNSGRVSKLTTLKGKQANALFWSPAGRFIILAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRILKDHFFQFAWRPRPPSFLSPEKEEEIAKNLKKYSKKYEAEDQDVSMLLSEQERERRRMLKDEWDKWVNEWKRLHEEEKLLRQKLRDGEASDEEEEYEAKEVEVEEILDVSEEVLSFDFGH 718
[Close]
BLAST of XM_017371097.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5A406 (Eukaryotic translation initiation factor 3 subunit B {ECO:0000256|HAMAP-Rule:MF_03001, ECO:0000256|PIRNR:PIRNR036424} (eIF3b {ECO:0000256|HAMAP-Rule:MF_03001, ECO:0000256|PIRNR:PIRNR036424}) (eIF-3-eta {ECO:0000256|HAMAP-Rule:MF_03001}) (eIF3 p110 {ECO:0000256|HAMAP-Rule:MF_03001}))

HSP 1 Score: 1278.08 bits (3306), Expect = 0.000e+0
Identity = 630/718 (87.74%), Postives = 684/718 (95.26%), Query Frame = 0
 
Query:    4 DTVPMEDIIARASRLGINLNDVKMDSIHLPPGQDFGILSDDEDLNEEDSLEFEGGFGNIIVVDNLPVVPKEKFEKLEGVVKKIYSQIGVIKDDGLWMPVDPATQKTLGYCFIEYNTPQKEAELAKEKTNGYKLDRAHIFAVNMFDEIEKFMKVPDEWAPPETKPYTPGENLQHWLTDEKARDQFVIRAGSDTEVLWNDARQLKADPVYKRNFWTESYVQWSPLGTYLATVHRQGAAVWGGASTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDSHRVVLNIFDVRTGKIMRDFKGSADDFAIGGTGGFAGVSWPVFRWSGGKDDKYFARMGKNVISVYETDTFTLIDKKSIKVENVMDFSWSPTDPIFALFVPELGGGNQPARVSLIQIPGKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDISFYSMRSGTNTGRVSKLTTLKGKQANALFWSPGGRFIILAGLKGFNGQLEFYNVDDLETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFHGKLLYRIMKDHFFQFLWRPRPPSFLSPEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQEREKRKKLKEEWEMWVSQWKKWHDEEKLERQRLRDGEASDEEEEYEAKEVEVEEVLDIKEEVLSLDYGQE 721
            D + ME+I   ASRLGI+++ V +DSI LPPG+DFGI SDDED+NEED+LEF+ GF NIIVVDNLPVVPKEKF+KLEGVV+KIYSQIG IK+DGL MPVDPATQKTLGYCFIEYNTPQ EAE+A+EKTN YKLDRAHIFAVN+FD+I+KFMKVPDEWAPPETKPY PGENLQHWLTDEKARDQFVIRAGSDTEVLWNDAR LK DPVYKR+FWTES+VQWSPLGTYLATVHRQGAAVWGGA++FNRLMRYAHPQVKLIDFSPGE++LVTYSSHEPSNPRD+HRVVLNIFDVRTGK+MRDFKGSAD+FA+GGTGG  GVSWPVFRW GGKDDKYFAR+GKN+ISVYET+TFTLIDKKSIKVENVMDF+WSPTDPI ALFVPELGGGNQPARVSL+QIP KEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAV+HGD+PRPDISFYSMRS  NTGRVSKLTTLKGKQANAL+WSP GRFIILAGLKGFNGQLEFYNVD+LETMAT EHFM TDIEWDPTGRYVAT+VTSVHEMENGFNIWSF+GKLLYRI+KDHFFQFLWRPRPPSFLSPEKEEEIAKNLK+YSKKYEAEDQDVS+LLSEQ+REKRK LK+EW+ WV++WKK H+ EKL+RQR+RDGEASDEEEEYEAKEVEVEE+LD+ EEV+S D+GQE
Sbjct:    3 DVMSMEEIRETASRLGIDISQVDLDSIRLPPGEDFGIRSDDEDINEEDNLEFDAGFSNIIVVDNLPVVPKEKFDKLEGVVRKIYSQIGGIKEDGLSMPVDPATQKTLGYCFIEYNTPQ-EAEIAREKTNLYKLDRAHIFAVNVFDDIDKFMKVPDEWAPPETKPYNPGENLQHWLTDEKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRSFWTESFVQWSPLGTYLATVHRQGAAVWGGATSFNRLMRYAHPQVKLIDFSPGERFLVTYSSHEPSNPRDTHRVVLNIFDVRTGKVMRDFKGSADEFAVGGTGGVTGVSWPVFRWGGGKDDKYFARIGKNIISVYETETFTLIDKKSIKVENVMDFNWSPTDPILALFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVVHGDSPRPDISFYSMRSTHNTGRVSKLTTLKGKQANALYWSPTGRFIILAGLKGFNGQLEFYNVDELETMATTEHFMTTDIEWDPTGRYVATSVTSVHEMENGFNIWSFNGKLLYRILKDHFFQFLWRPRPPSFLSPEKEEEIAKNLKRYSKKYEAEDQDVSMLLSEQDREKRKMLKDEWDRWVNEWKKLHEAEKLDRQRMRDGEASDEEEEYEAKEVEVEELLDVLEEVISFDFGQE 719
[Close]
BLAST of XM_017371097.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P4BP28 (Eukaryotic translation initiation factor 3 subunit B {ECO:0000256|HAMAP-Rule:MF_03001, ECO:0000256|PIRNR:PIRNR036424} (eIF3b {ECO:0000256|HAMAP-Rule:MF_03001, ECO:0000256|PIRNR:PIRNR036424}) (eIF-3-eta {ECO:0000256|HAMAP-Rule:MF_03001}) (eIF3 p110 {ECO:0000256|HAMAP-Rule:MF_03001}))

HSP 1 Score: 1276.92 bits (3303), Expect = 0.000e+0
Identity = 621/715 (86.85%), Postives = 678/715 (94.83%), Query Frame = 0
 
Query:    4 DTVPMEDIIARASRLGINLNDVKMDSIHLPPGQDFGILSDDEDLNEEDSLEFEGGFGNIIVVDNLPVVPKEKFEKLEGVVKKIYSQIGVIKDDGLWMPVDPATQKTLGYCFIEYNTPQKEAELAKEKTNGYKLDRAHIFAVNMFDEIEKFMKVPDEWAPPETKPYTPGENLQHWLTDEKARDQFVIRAGSDTEVLWNDARQLKADPVYKRNFWTESYVQWSPLGTYLATVHRQGAAVWGGASTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDSHRVVLNIFDVRTGKIMRDFKGSADDFAIGGTGGFAGVSWPVFRWSGGKDDKYFARMGKNVISVYETDTFTLIDKKSIKVENVMDFSWSPTDPIFALFVPELGGGNQPARVSLIQIPGKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDISFYSMRSGTNTGRVSKLTTLKGKQANALFWSPGGRFIILAGLKGFNGQLEFYNVDDLETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFHGKLLYRIMKDHFFQFLWRPRPPSFLSPEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQEREKRKKLKEEWEMWVSQWKKWHDEEKLERQRLRDGEASDEEEEYEAKEVEVEEVLDIKEEVLSLDY 718
            D   M +I A ASRLG++L+ + +DSI LPP  D GI SDDED+ +E++LEF+ GFGNIIVVDNLPVVP+EKFEKLEGV++KIYSQIG+IK+DGLWMPVDP T+KTLGYCFIEYNTPQ EAELAKEKT+GYKLDRAHIF+VNMFD+ ++FMKVPDEWAPPET PYTPGENLQHWLTD KARDQFVIRAGSDTEVLWNDAR LK DPVYKR FWTES+VQWSP+GTYLAT+HRQGAAVWGGA+TFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRD++RVV+NIFDVRTGK+MRDFKGSADDFAIGG GG AGVSWP+FRW GGKDDKYFAR+GKN+ISVYETDTF+L+DKKS+KVE+VMDFSWSPTDPI ALFVPELGGGNQPARVSL+QIP KEELRQKNLFSVSDCKMYWQSNG+YLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGD+PRPDISFYSMR+  NTGRVSKLTTLKGKQANALFWSP GRFIILAGLKG NGQLEFYNVD+LETMATAEHFMATDIEWDPTGRYVAT+VTSVHEMENGFNIWSFHGKLLYRI+KDHFFQ+LWRPRPP+ LSPEKEEEIAKNLKKYSKKYEAEDQDVS+LLSEQEREKRK LK+EWE WV++WKK H++EKLERQRLRDGEASDEEEEYEAKEVE+EEV+D+KEEV+ LD+
Sbjct:    3 DVAVMREIEATASRLGVDLSAIDLDSIRLPPDDDLGIQSDDEDVYQEENLEFDTGFGNIIVVDNLPVVPREKFEKLEGVIRKIYSQIGLIKEDGLWMPVDPQTEKTLGYCFIEYNTPQ-EAELAKEKTHGYKLDRAHIFSVNMFDDFDRFMKVPDEWAPPETSPYTPGENLQHWLTDSKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRAFWTESFVQWSPMGTYLATIHRQGAAVWGGATTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADDFAIGGAGGVAGVSWPIFRWGGGKDDKYFARLGKNMISVYETDTFSLVDKKSLKVESVMDFSWSPTDPILALFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGEYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDHPRPDISFYSMRTAQNTGRVSKLTTLKGKQANALFWSPAGRFIILAGLKGLNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATSVTSVHEMENGFNIWSFHGKLLYRILKDHFFQYLWRPRPPTLLSPEKEEEIAKNLKKYSKKYEAEDQDVSMLLSEQEREKRKALKDEWERWVNEWKKQHEQEKLERQRLRDGEASDEEEEYEAKEVEIEEVIDVKEEVVPLDH 716
[Close]
BLAST of XM_017371097.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A445B4W0 (Eukaryotic translation initiation factor 3 subunit B {ECO:0000256|HAMAP-Rule:MF_03001, ECO:0000256|PIRNR:PIRNR036424} (eIF3b {ECO:0000256|HAMAP-Rule:MF_03001, ECO:0000256|PIRNR:PIRNR036424}) (eIF-3-eta {ECO:0000256|HAMAP-Rule:MF_03001}) (eIF3 p110 {ECO:0000256|HAMAP-Rule:MF_03001}))

HSP 1 Score: 1276.92 bits (3303), Expect = 0.000e+0
Identity = 621/715 (86.85%), Postives = 678/715 (94.83%), Query Frame = 0
 
Query:    4 DTVPMEDIIARASRLGINLNDVKMDSIHLPPGQDFGILSDDEDLNEEDSLEFEGGFGNIIVVDNLPVVPKEKFEKLEGVVKKIYSQIGVIKDDGLWMPVDPATQKTLGYCFIEYNTPQKEAELAKEKTNGYKLDRAHIFAVNMFDEIEKFMKVPDEWAPPETKPYTPGENLQHWLTDEKARDQFVIRAGSDTEVLWNDARQLKADPVYKRNFWTESYVQWSPLGTYLATVHRQGAAVWGGASTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDSHRVVLNIFDVRTGKIMRDFKGSADDFAIGGTGGFAGVSWPVFRWSGGKDDKYFARMGKNVISVYETDTFTLIDKKSIKVENVMDFSWSPTDPIFALFVPELGGGNQPARVSLIQIPGKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDISFYSMRSGTNTGRVSKLTTLKGKQANALFWSPGGRFIILAGLKGFNGQLEFYNVDDLETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFHGKLLYRIMKDHFFQFLWRPRPPSFLSPEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQEREKRKKLKEEWEMWVSQWKKWHDEEKLERQRLRDGEASDEEEEYEAKEVEVEEVLDIKEEVLSLDY 718
            D   M +I A ASRLG++L+ + +DSI LPP  D GI SDDED+ +E++LEF+ GFGNIIVVDNLPVVP+EKFEKLEGV++KIYSQIG+IK+DGLWMPVDP T+KTLGYCFIEYNTPQ EAELAKEKT+GYKLDRAHIF+VNMFD+ ++FMKVPDEWAPPET PYTPGENLQHWLTD KARDQFVIRAGSDTEVLWNDAR LK DPVYKR FWTES+VQWSP+GTYLAT+HRQGAAVWGGA+TFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRD++RVV+NIFDVRTGK+MRDFKGSADDFAIGG GG AGVSWP+FRW GGKDDKYFAR+GKN+ISVYETDTF+L+DKKS+KVE+VMDFSWSPTDPI ALFVPELGGGNQPARVSL+QIP KEELRQKNLFSVSDCKMYWQSNG+YLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGD+PRPDISFYSMR+  NTGRVSKLTTLKGKQANALFWSP GRFIILAGLKG NGQLEFYNVD+LETMATAEHFMATDIEWDPTGRYVAT+VTSVHEMENGFNIWSFHGKLLYRI+KDHFFQ+LWRPRPP+ LSPEKEEEIAKNLKKYSKKYEAEDQDVS+LLSEQEREKRK LK+EWE WV++WKK H++EKLERQRLRDGEASDEEEEYEAKEVE+EEV+D+KEEV+ LD+
Sbjct:    3 DVAVMREIEATASRLGVDLSAIDLDSIRLPPDDDLGIQSDDEDVYQEENLEFDTGFGNIIVVDNLPVVPREKFEKLEGVIRKIYSQIGLIKEDGLWMPVDPQTEKTLGYCFIEYNTPQ-EAELAKEKTHGYKLDRAHIFSVNMFDDFDRFMKVPDEWAPPETSPYTPGENLQHWLTDSKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRAFWTESFVQWSPMGTYLATIHRQGAAVWGGATTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADDFAIGGAGGVAGVSWPIFRWGGGKDDKYFARLGKNMISVYETDTFSLVDKKSLKVESVMDFSWSPTDPILALFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGEYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDHPRPDISFYSMRTAQNTGRVSKLTTLKGKQANALFWSPAGRFIILAGLKGLNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATSVTSVHEMENGFNIWSFHGKLLYRILKDHFFQYLWRPRPPTLLSPEKEEEIAKNLKKYSKKYEAEDQDVSMLLSEQEREKRKALKDEWERWVNEWKKQHEQEKLERQRLRDGEASDEEEEYEAKEVEIEEVIDVKEEVVPLDH 716
[Close]
BLAST of XM_017371097.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A371I9C8 ((Eukaryotic translation initiation factor 3 subunit B {ECO:0000313|EMBL:RDY11638.1}) (Fragment))

HSP 1 Score: 1276.15 bits (3301), Expect = 0.000e+0
Identity = 615/718 (85.65%), Postives = 679/718 (94.57%), Query Frame = 0
 
Query:    4 DTVPMEDIIARASRLGINLNDVKMDSIHLPPGQDFGILSDDEDLNEEDSLEFEGGFGNIIVVDNLPVVPKEKFEKLEGVVKKIYSQIGVIKDDGLWMPVDPATQKTLGYCFIEYNTPQKEAELAKEKTNGYKLDRAHIFAVNMFDEIEKFMKVPDEWAPPETKPYTPGENLQHWLTDEKARDQFVIRAGSDTEVLWNDARQLKADPVYKRNFWTESYVQWSPLGTYLATVHRQGAAVWGGASTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDSHRVVLNIFDVRTGKIMRDFKGSADDFAIGGTGGFAGVSWPVFRWSGGKDDKYFARMGKNVISVYETDTFTLIDKKSIKVENVMDFSWSPTDPIFALFVPELGGGNQPARVSLIQIPGKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDISFYSMRSGTNTGRVSKLTTLKGKQANALFWSPGGRFIILAGLKGFNGQLEFYNVDDLETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFHGKLLYRIMKDHFFQFLWRPRPPSFLSPEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQEREKRKKLKEEWEMWVSQWKKWHDEEKLERQRLRDGEASDEEEEYEAKEVEVEEVLDIKEEVLSLDYGQE 721
            D + M++I   A RLG++L+ + +D+I LPPG++ GI SDDE++ +ED+LE+E GFGNIIVVDNLPVVP+EKF+KLEGVV+KIYSQIGVIKDDGLWMPVDP T+KTLGYCFIEYNTPQ EAELAKEKT+GYKLDRAHIFAV+MFD+I++FMKVP+EWAPPETKPY PGENLQHWLTD KARDQFVIRAGSDTEVLWNDAR LK DPVYKR FWTES+VQWSPLGTYLATVHRQGAAVWGGAS+FNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRD++RVV+NIFDVRTGK+MRDFKGSADDFA+GG GG  GVSWPVF+WSGG+DDKYFARMGKN++SVYET+TF+L+DKKS+KVEN+MDFSWSPTDPI ALFVPE+GGGNQPARVSLIQIP KEELRQKNLFSVSDCKMYWQSNGDYLAV VDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRF VIHGDNP+PD+S YSMR+  NTGRVSKLTTLKGKQANALFWSP GR+I+LAGLKGFNGQLEFYNVD+LETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSF+GK LYRI+KDHFFQFLWRPRPPSFLSPEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQEREKR+ LKEEWE WV++WK  H++E L+RQ+LRDGEASDEEEEYEAK++EVEEV+++ EEVL L+YGQE
Sbjct:   54 DVMIMKEIEDTALRLGVDLSTLDLDAIRLPPGENCGIDSDDEEIYQEDNLEYESGFGNIIVVDNLPVVPREKFDKLEGVVRKIYSQIGVIKDDGLWMPVDPETEKTLGYCFIEYNTPQ-EAELAKEKTHGYKLDRAHIFAVSMFDDIDRFMKVPNEWAPPETKPYAPGENLQHWLTDAKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRAFWTESFVQWSPLGTYLATVHRQGAAVWGGASSFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADDFAVGGAGGVTGVSWPVFKWSGGRDDKYFARMGKNILSVYETETFSLVDKKSLKVENIMDFSWSPTDPIIALFVPEMGGGNQPARVSLIQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVNVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFVVIHGDNPKPDVSIYSMRTAQNTGRVSKLTTLKGKQANALFWSPAGRYIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKHLYRILKDHFFQFLWRPRPPSFLSPEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQEREKRRMLKEEWEKWVNEWKLMHEDESLQRQKLRDGEASDEEEEYEAKDIEVEEVINVTEEVLHLEYGQE 770
[Close]
BLAST of XM_017371097.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A151QYS0 (Eukaryotic translation initiation factor 3 subunit B {ECO:0000256|HAMAP-Rule:MF_03001, ECO:0000256|PIRNR:PIRNR036424} (eIF3b {ECO:0000256|HAMAP-Rule:MF_03001, ECO:0000256|PIRNR:PIRNR036424}) (eIF-3-eta {ECO:0000256|HAMAP-Rule:MF_03001}) (eIF3 p110 {ECO:0000256|HAMAP-Rule:MF_03001}))

HSP 1 Score: 1275 bits (3298), Expect = 0.000e+0
Identity = 614/718 (85.52%), Postives = 682/718 (94.99%), Query Frame = 0
 
Query:    4 DTVPMEDIIARASRLGINLNDVKMDSIHLPPGQDFGILSDDEDLNEEDSLEFEGGFGNIIVVDNLPVVPKEKFEKLEGVVKKIYSQIGVIKDDGLWMPVDPATQKTLGYCFIEYNTPQKEAELAKEKTNGYKLDRAHIFAVNMFDEIEKFMKVPDEWAPPETKPYTPGENLQHWLTDEKARDQFVIRAGSDTEVLWNDARQLKADPVYKRNFWTESYVQWSPLGTYLATVHRQGAAVWGGASTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDSHRVVLNIFDVRTGKIMRDFKGSADDFAIGGTGGFAGVSWPVFRWSGGKDDKYFARMGKNVISVYETDTFTLIDKKSIKVENVMDFSWSPTDPIFALFVPELGGGNQPARVSLIQIPGKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDISFYSMRSGTNTGRVSKLTTLKGKQANALFWSPGGRFIILAGLKGFNGQLEFYNVDDLETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFHGKLLYRIMKDHFFQFLWRPRPPSFLSPEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQEREKRKKLKEEWEMWVSQWKKWHDEEKLERQRLRDGEASDEEEEYEAKEVEVEEVLDIKEEVLSLDYGQE 721
            D + M++I   A RLG++L+ + +DSIHLPPG++ GI+SDDE++ +ED+LEFE GFGNIIVVDNLPVVP+EKFEKLEGVV+KIYSQIGVIK+ GLWMPVDP T+KTLGYCFIEYNTPQ EAELAKEKT+GYKLDRAHIFAV+MFD+ ++FMKVP+EWAPPETKPYTPGENLQHWLTD KARDQFVIRAGSDTEVLWNDAR LK DPVYKR FWTES+VQWSPLGTYLATVHRQGAAVWGGA++FNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRD++RVV+NIFDVRTGK+MRDFKGSADDFA+GG GG  GVSWPVF+WSGG+DDKYFARMGKNV+SVYET+TF+L+DKKS+KVEN+MDFSWSP DPI +LFVPE+GGGNQPARVSLIQIP KEELRQKNLFSVSDCKMYWQSNGDYLAV V+RYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNP+PD+S YSMR+  NTGRVSKLTTLKGKQANALFWSP GR+I+LAGLKGFNGQLEFYNVD+LETMATAEHFMATDIEWDPTGRYVAT+VTSVHEMENGFNIWSF+GK LYRI+KDHFFQFLWRPRPPSFLSPEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQEREKR+ LKEEW+ WV++WK+ H++E L+RQ+LRDGEASDEEEEYEAK++EVEEV+D+K+EVL L+YGQE
Sbjct:    3 DVMVMKEIEDTALRLGVDLSTLDLDSIHLPPGENCGIVSDDEEIYQEDNLEFESGFGNIIVVDNLPVVPREKFEKLEGVVRKIYSQIGVIKEGGLWMPVDPETEKTLGYCFIEYNTPQ-EAELAKEKTHGYKLDRAHIFAVSMFDDFDRFMKVPNEWAPPETKPYTPGENLQHWLTDAKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRAFWTESFVQWSPLGTYLATVHRQGAAVWGGATSFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADDFAVGGAGGVTGVSWPVFKWSGGRDDKYFARMGKNVLSVYETETFSLVDKKSLKVENIMDFSWSPNDPIISLFVPEMGGGNQPARVSLIQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVNVERYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPKPDVSIYSMRTAQNTGRVSKLTTLKGKQANALFWSPAGRYIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATSVTSVHEMENGFNIWSFNGKHLYRILKDHFFQFLWRPRPPSFLSPEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQEREKRRMLKEEWDKWVNEWKRLHEDESLQRQKLRDGEASDEEEEYEAKDIEVEEVIDVKQEVLHLEYGQE 719
Match NameStatsDescription
A0A5J4ZQT7E-Value: 0.000e+0, PID: 88.44Eukaryotic translation initiation factor 3 subunit... [more]
A0A6P4AEY0E-Value: 0.000e+0, PID: 87.47Eukaryotic translation initiation factor 3 subunit... [more]
A0A7J7H0M7E-Value: 0.000e+0, PID: 88.72Eukaryotic translation initiation factor 3 subunit... [more]
A0A6I9TLB0E-Value: 0.000e+0, PID: 87.96Eukaryotic translation initiation factor 3 subunit... [more]
A0A5A7UC22E-Value: 0.000e+0, PID: 86.47Eukaryotic translation initiation factor 3 subunit... [more]
A0A5J5A406E-Value: 0.000e+0, PID: 87.74Eukaryotic translation initiation factor 3 subunit... [more]
A0A6P4BP28E-Value: 0.000e+0, PID: 86.85Eukaryotic translation initiation factor 3 subunit... [more]
A0A445B4W0E-Value: 0.000e+0, PID: 86.85Eukaryotic translation initiation factor 3 subunit... [more]
A0A371I9C8E-Value: 0.000e+0, PID: 85.65(Eukaryotic translation initiation factor 3 subuni... [more]
A0A151QYS0E-Value: 0.000e+0, PID: 85.52Eukaryotic translation initiation factor 3 subunit... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.