XM_017370037.1

Resource Type: 
Polypeptide
Name: 
XM_017370037.1
Identifier: 
XM_017370037.1-protein
Sequence: 
MCSKISSSPWILGTSKLSVYENQTRPYFTHTLATKTKSSTSVNPTICGLE
SGSDDYKFVLHDALDSSGNNTTHARAARDGFCSQVKKLTVVERETSIATN
RRVDLARTALYIAAEDDSLISHSSVPLPVEAFLERLDDLSMGYCSHFGSS
FQSSPENFLECMDTYLYINKAFCRHSSKNPSEQRTLYLHSVLTHRLGSAA
MLSLVYAEILKMFRIWGILNFDVEIFFPHDSSSNPRGYIKQKSKESDQAH
IMTTESLLVKILTELKVAFWPFQLDQDKSLFLRAAEAANCSRRSRNVNES
ASELASVKAAQHRLERGVWTSVRFGDMRRALSACERLILLNTDPKELRDY
SVLLYHSGFYEESLHYLKLYQDAEKSSNSTSDLEKNAVDMLLIRLNLILM
EDGWSSPPHIRNFLHNSDPW
Sequence Length: 
420
Sequence Checksum: 
3e101fdb59d1d8ed213fd1fdba7c55a5
View location in JBrowse: 
DCARv2_Chr9:11831334..11844950+
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017370037.1, derives from mRNA, XM_017370037.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017370037.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017370037.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6R354 ((Alpha-1,3-mannosyltransferase {ECO:0000313|EMBL:PSS19671.1}))

HSP 1 Score: 548.125 bits (1411), Expect = 0.000e+0
Identity = 268/378 (70.90%), Postives = 322/378 (85.19%), Query Frame = 0
 
Query:   46 ICGLESG-SDDYKFVLHDALDSSGNNTTHARAARDGFCSQVKKLTVVERETSIATNRRVDLARTALYIAAEDDSLISHSSVPLPVEAFLERLDDLSMGYCSHFGSSFQSSPENFLECMDTYLYINKAFCRHSSKNPSEQRTLYLHSVLTHRLGSAAMLSLVYAEILKMFRIWGILNFDVEIFFPHDSSSNPRGYIKQKSKESDQAHIMTTESLLVKILTELKVAFWPFQLDQDKSLFLRAAEAANCSRRSRNVNESASELASVKAAQHRLERGVWTSVRFGDMRRALSACERLILLNTDPKELRDYSVLLYHSGFYEESLHYLKLYQDAEK-SSNSTSDLEKNAVDMLLIRLNLILMEDGWSSPPHIRNFL-HNSDPW 420
            +C  + G +++ KFVLH+ALDSSG NT HAR AR+GFCSQ+K+L+ +ERETSI+ NR VDL RTALYIAAEDDSLISHSSVPLPV+AFLERLDD SM +C+ + SSF+SSPEN ++C++ YLY++K F R +++N SEQR LYL SVLTHRLGSA MLSL+Y+EILKM R+WG+L+FD+EIFFPH+  S PRGY KQKSKESDQ HIMT+ESLL +IL +LK AFWPFQLD ++SLFLRAA AAN S  S NV ESA  LAS KAA+HRLERGVWTSVRFGDMRRALSACERLILL TDPKELRDYSVLLYH GFYEESL +L+ YQDA+K SS+S  D+E++AV+ L+IRLNLILM++GWS P H ++FL +NS+PW
Sbjct:   35 VCRSQLGRANNLKFVLHEALDSSGINTAHARDAREGFCSQIKRLSNIERETSISINRGVDLGRTALYIAAEDDSLISHSSVPLPVDAFLERLDDHSMRFCTQYSSSFRSSPENIIKCLERYLYVDKGFRRTNARNQSEQRALYLPSVLTHRLGSATMLSLIYSEILKMLRLWGLLDFDIEIFFPHNPISLPRGYRKQKSKESDQPHIMTSESLLTEILRDLKNAFWPFQLDNNRSLFLRAAHAANYSDGSNNVEESAFNLASAKAARHRLERGVWTSVRFGDMRRALSACERLILLETDPKELRDYSVLLYHCGFYEESLQFLRYYQDAKKESSDSFIDVEEDAVEKLIIRLNLILMKEGWSRPSHGKSFLSNNSEPW 412
[Close]
BLAST of XM_017370037.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: D7UBN4 (Transglut_core2 domain-containing protein {ECO:0000259|Pfam:PF13369})

HSP 1 Score: 542.347 bits (1396), Expect = 0.000e+0
Identity = 278/428 (64.95%), Postives = 326/428 (76.17%), Query Frame = 0
 
Query:    1 MCS-KISSSPWILGTSKLSVYENQTRPYFTHTLATKTKSSTSVNPTICGLESGSDDYKFVLHDALDSSGNNTTHARAARDGFCSQVKKLTVVERETSIATNRRVDLARTALYIAAEDDSLISHSSVPLPVEAFLERLDDLSMGYCSHFGSSFQSSPENFLECMDTYLYINKAFCRHSSKNPSEQRTLYLHSVLTHRLGSAAMLSLVYAEILKMFRIWGILNFDVEIFFPHDSSSNPRGYIKQKSKESDQAHIMTTESLLVKILTELKVAFWPFQLDQDKSLFLRAAEAANCSRRSRNVNESASELASVKAAQHRLERGVWTSVRFGDMRRALSACERLILLNTDPKELRDYSVLLYHSGFYEESLHYLKLYQDAEKS------SNSTSDLEKNAVDMLLIRLNLILMEDGWSSPPHIRNFL-HNSDPW 420
            MC+  +  SPW+ G   LS     +             S   V   +C  +  S+D KFVLH ALD+ G +  HA+ ARDGFCS++K+L+ +ERETSI+ NR VDL +TALYIAAEDDSLISHSSVPLPV+AF+ERLDDLSM YCSH+ S+F++SPE F E ++ YLYINK F R ++ N SE R LYLHSVLTHR GSAAMLSL+Y+EILKM R+WG+L+FDVEIFFPHDS S PRGY KQKSKESDQ HIMT++SL V++L  LK AFWPFQ D  +SLFLRAA AANC  RS  V ES  ELAS KAAQHRLERGVWTSVRFGDMRRALSACERLILL TD  ELRDYS+LLYH GFYE+SL YLKLYQD E S      SNS S+LE++AV  L++RLNLILME+GWS P H R+FL +NS+PW
Sbjct:    1 MCAMSLLVSPWVSGAFTLSSSSASSSSSNFSKFHFSLSSCGRV---VCRAQYASEDLKFVLHHALDALGTDIAHAKVARDGFCSEIKRLSDIERETSISINRGVDLGKTALYIAAEDDSLISHSSVPLPVDAFIERLDDLSMDYCSHYSSAFRASPEIFFETLERYLYINKGF-RRTNANLSESRALYLHSVLTHRSGSAAMLSLIYSEILKMLRLWGLLDFDVEIFFPHDSHSLPRGYHKQKSKESDQPHIMTSQSLFVEMLRSLKDAFWPFQHDNTRSLFLRAAHAANCIDRSNIVTESGFELASAKAAQHRLERGVWTSVRFGDMRRALSACERLILLETDLTELRDYSILLYHCGFYEQSLQYLKLYQDLESSSTEKQLSNSPSNLEEDAVAKLMVRLNLILMEEGWSCPTH-RSFLGNNSEPW 423
[Close]
BLAST of XM_017370037.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6U5A6 ((uncharacterized protein LOC113707289 {ECO:0000313|RefSeq:XP_027085346.1}))

HSP 1 Score: 538.495 bits (1386), Expect = 0.000e+0
Identity = 272/427 (63.70%), Postives = 327/427 (76.58%), Query Frame = 0
 
Query:    5 ISSSPWILGTSKLSVYENQTRPYFTHTLATKTKSSTSVN----PTICGLESGSDDYKFVLHDALDSSGNNTTHARAARDGFCSQVKKLTVVERETSIATNRRVDLARTALYIAAEDDSLISHSSVPLPVEAFLERLDDLSMGYCSHFGSSFQSSPENFLECMDTYLYINKAFCRHSSKNPSEQRTLYLHSVLTHRLGSAAMLSLVYAEILKMFRIWGILNFDVEIFFPHDSSSNPRGYIKQKSKESDQAHIMTTESLLVKILTELKVAFWPFQLDQDKSLFLRAAEAANCSRRSRNVNESASELASVKAAQHRLERGVWTSVRFGDMRRALSACERLILLNTDPKELRDYSVLLYHSGFYEESLHYLKLYQDAEKSSNSTS------DLEKNAVDMLLIRLNLILMEDGWSSPPHIRNFL-HNSDPW 420
            + SSPWI GT  L      + PY   +  +  KS  S +    P  C     ++D KFVLHDAL SSG +TTHARAAR+GFC Q++KLT VERETSI+ NR VDL +TAL++AAEDDSLISHSSVPLPV+ F++RLDDLSMGYCSH+GSSF+  PE FLEC+D YLY++K F R S  +  EQR+LYLHSVLTHR GSA+MLSL+Y+E+LKM R+WG++NFDVE+FFPHDS S+PRGY KQKS+E DQ HIMT++SLLV+IL +LK AFWPFQ D  KSLF RAA+AANC   S +V ESA ++AS KAAQHRL RGVWTSVRFGDMRRAL+ACERLILL TDP ELRDY VLLYH GFYE +L YLKL+QD +KSS          DLE+ A++ L+IRL LI ME+ WS P    +FL +NS+PW
Sbjct:    6 MGSSPWIAGTFNLL----SSTPYSAESSKSPNKSQCSSSARRRPAYCKFSLPANDLKFVLHDALQSSGLDTTHARAARNGFCQQIQKLTDVERETSISINRVVDLGKTALHVAAEDDSLISHSSVPLPVDDFIDRLDDLSMGYCSHYGSSFRYPPEKFLECLDRYLYVDKGFQR-SKHSQVEQRSLYLHSVLTHRSGSASMLSLIYSEVLKMLRLWGMVNFDVEVFFPHDSHSSPRGYHKQKSREGDQLHIMTSQSLLVEILKDLKNAFWPFQHDPAKSLFFRAAQAANCD-TSNSVEESALKIASAKAAQHRLLRGVWTSVRFGDMRRALAACERLILLETDPIELRDYGVLLYHCGFYEMALQYLKLFQDIQKSSKQEKSYHPFRDLEEEALEKLIIRLELIKMEEDWSRPSERTSFLSNNSEPW 426
[Close]
BLAST of XM_017370037.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5B3N5 (Transglut_core2 domain-containing protein {ECO:0000259|Pfam:PF13369})

HSP 1 Score: 535.798 bits (1379), Expect = 0.000e+0
Identity = 263/377 (69.76%), Postives = 312/377 (82.76%), Query Frame = 0
 
Query:   51 SGSDDYKFVLHDALDSSGNNTTHARAARDGFCSQVKKLTVVERETSIATNRRVDLARTALYIAAEDDSLISHSSVPLPVEAFLERLDDLSMGYCSHFGSSFQSSPENFLECMDTYLYINKAFCRHSSKNPSEQRTLYLHSVLTHRLGSAAMLSLVYAEILKMFRIWGILNFDVEIFFPHDSSSNPRGYIKQKSKESDQAHIMTTESLLVKILTELKVAFWPFQLDQDKSLFLRAAEAANCSRRSRNVNESASELASVKAAQHRLERGVWTSVRFGDMRRALSACERLILLNTDPKELRDYSVLLYHSGFYEESLHYLKLYQDAEK------SSNSTSDLEKNAVDMLLIRLNLILMEDGWSSPPHIRNFL-HNSDPW 420
            + +++ KF+LH AL+SSG +TTHARAAR+GFCSQ+KKL+ +ER+TSI+ NR VDL +TALYIAAEDDSLISHSSVPLPV+AF+ RLDDLSM YC+   SSF+SSPEN L+C++ YLY+NK F R + +N  E R LYLHSVLTHR GSA MLSL+Y+EILKM R+WG+L+FDVEIFFPHD  S PRGY KQ+SKESDQ HIMT++SLLV+IL  LK AFWPFQLD  +SLFLRAA AANC+ R  N  ESA ++AS KAAQHRLERGVWTSVRFGDMRRALSACERLILL TD KELRDYSVLLYH GFYEESL YLKLYQD +       SS+S S LE++AV+ L+IRLNLIL E+GWS   ++R+ L +NS+PW
Sbjct:   63 AAANELKFLLHHALESSGVDTTHARAAREGFCSQIKKLSDIERQTSISINRGVDLGKTALYIAAEDDSLISHSSVPLPVDAFIARLDDLSMDYCTQNSSSFRSSPENLLQCLERYLYVNKGFRRTNVQNQPESRALYLHSVLTHRSGSAPMLSLIYSEILKMLRLWGLLDFDVEIFFPHDPHSLPRGYHKQRSKESDQPHIMTSQSLLVEILRNLKAAFWPFQLDHTRSLFLRAAHAANCADRLNNAEESAFQIASAKAAQHRLERGVWTSVRFGDMRRALSACERLILLETDLKELRDYSVLLYHCGFYEESLQYLKLYQDLKNSSIPNLSSDSFSVLEEDAVEKLMIRLNLILTEEGWSRTSYVRSSLCNNSEPW 439
[Close]
BLAST of XM_017370037.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6VXB8 ((uncharacterized protein LOC113727318 {ECO:0000313|RefSeq:XP_027107215.1}))

HSP 1 Score: 535.413 bits (1378), Expect = 0.000e+0
Identity = 270/427 (63.23%), Postives = 327/427 (76.58%), Query Frame = 0
 
Query:    5 ISSSPWILGTSKLSVYENQTRPYFTHTLATKTKSSTSVN----PTICGLESGSDDYKFVLHDALDSSGNNTTHARAARDGFCSQVKKLTVVERETSIATNRRVDLARTALYIAAEDDSLISHSSVPLPVEAFLERLDDLSMGYCSHFGSSFQSSPENFLECMDTYLYINKAFCRHSSKNPSEQRTLYLHSVLTHRLGSAAMLSLVYAEILKMFRIWGILNFDVEIFFPHDSSSNPRGYIKQKSKESDQAHIMTTESLLVKILTELKVAFWPFQLDQDKSLFLRAAEAANCSRRSRNVNESASELASVKAAQHRLERGVWTSVRFGDMRRALSACERLILLNTDPKELRDYSVLLYHSGFYEESLHYLKLYQDAEKSSNS------TSDLEKNAVDMLLIRLNLILMEDGWSSPPHIRNFL-HNSDPW 420
            + SS WI GT  L      + PY   +  +  KS  S +    P  C     ++D KFVLHDAL SSG +TTHARAAR+GFC Q++KLT VERETSI+ NR VDL +TAL++AAEDDSLISHSSVPLPV+ F++RLDDLSMGYCSH+GSSF+  PE FLEC+D YLY++K F R S  +  EQR+LYLHSVLTHR GSA+MLSL+Y+E+LKM R+WG++NFDVE+FFPHDS S+PRGY KQKS+E DQ HIMT++SLLV+IL +LK AFWPFQ D  KSLF RAA+AANC   S +V ESA ++AS KAAQHRL RGVWTSV+FGDMRRAL+ACERLILL TDP ELRDY VLLYH GFYE +L YLKL+QD +KSS        + DLE+ A++ L+IRL LI ME+ WS P    +FL +NS+PW
Sbjct:    6 MGSSSWIAGTFNLL----SSTPYSAESSKSPNKSQCSSSARRRPAYCKFSLPANDLKFVLHDALQSSGLDTTHARAARNGFCQQIQKLTDVERETSISINRVVDLGKTALHVAAEDDSLISHSSVPLPVDDFIDRLDDLSMGYCSHYGSSFRYPPEKFLECLDRYLYVDKGFQR-SKHSQVEQRSLYLHSVLTHRSGSASMLSLIYSEVLKMLRLWGMVNFDVEVFFPHDSHSSPRGYHKQKSREGDQLHIMTSQSLLVEILKDLKNAFWPFQHDPAKSLFFRAAQAANCD-TSNSVEESALKIASAKAAQHRLLRGVWTSVQFGDMRRALAACERLILLETDPIELRDYGVLLYHCGFYEMALQYLKLFQDIQKSSKQEKSYHPSRDLEEEALEKLIIRLKLIKMEEDWSRPSERTSFLSNNSEPW 426
[Close]
BLAST of XM_017370037.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068VDN5 (Transglut_core2 domain-containing protein {ECO:0000259|Pfam:PF13369})

HSP 1 Score: 533.872 bits (1374), Expect = 0.000e+0
Identity = 269/427 (63.00%), Postives = 327/427 (76.58%), Query Frame = 0
 
Query:    5 ISSSPWILGTSKLSVYENQTRPYFTHTLATKTKSSTSVN----PTICGLESGSDDYKFVLHDALDSSGNNTTHARAARDGFCSQVKKLTVVERETSIATNRRVDLARTALYIAAEDDSLISHSSVPLPVEAFLERLDDLSMGYCSHFGSSFQSSPENFLECMDTYLYINKAFCRHSSKNPSEQRTLYLHSVLTHRLGSAAMLSLVYAEILKMFRIWGILNFDVEIFFPHDSSSNPRGYIKQKSKESDQAHIMTTESLLVKILTELKVAFWPFQLDQDKSLFLRAAEAANCSRRSRNVNESASELASVKAAQHRLERGVWTSVRFGDMRRALSACERLILLNTDPKELRDYSVLLYHSGFYEESLHYLKLYQDAEKSSNS------TSDLEKNAVDMLLIRLNLILMEDGWSSPPHIRNFL-HNSDPW 420
            + SS WI GT  L      + PY   +  +  KS  S +    P  C     ++D KFVLHDAL SSG +TTHARAAR+GFC Q++KLT VERETSI+ NR VDL +TAL++AAEDDSLISHSSVPLPV+ F++RLDDLSMGYCSH+GSSF+  PE FLEC+D YL+++K F R S  +  EQR+LYLHSVLTHR GSA+MLSL+Y+E+LKM R+WG++NFDVE+FFPHDS S+PRGY KQKS+E DQ HIMT++SLLV+IL +LK AFWPFQ D  KSLF RAA+AANC   S +V ESA ++AS KAAQHRL RGVWTSV+FGDMRRAL+ACERLILL TDP ELRDY VLLYH GFYE +L YLKL+QD +KSS        + DLE+ A++ L+IRL LI ME+ WS P    +FL +NS+PW
Sbjct:    6 MGSSSWIAGTFNLL----SSTPYSAESSKSPNKSQCSSSARRRPAYCKFSLPANDLKFVLHDALQSSGLDTTHARAARNGFCQQIQKLTDVERETSISINRVVDLGKTALHVAAEDDSLISHSSVPLPVDDFIDRLDDLSMGYCSHYGSSFRYPPEKFLECLDRYLFVDKGFQR-SKHSQVEQRSLYLHSVLTHRSGSASMLSLIYSEVLKMLRLWGMVNFDVEVFFPHDSHSSPRGYHKQKSREGDQLHIMTSQSLLVEILKDLKNAFWPFQHDPAKSLFFRAAQAANCD-TSNSVEESALKIASAKAAQHRLLRGVWTSVQFGDMRRALAACERLILLETDPIELRDYGVLLYHCGFYEMALQYLKLFQDIQKSSKQEKSYHPSRDLEEEALEKLIIRLKLIKMEEDWSRPSERTSFLSNNSEPW 426
[Close]
BLAST of XM_017370037.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1R3HSP0 (Transglut_core2 domain-containing protein {ECO:0000259|Pfam:PF13369})

HSP 1 Score: 531.946 bits (1369), Expect = 0.000e+0
Identity = 260/378 (68.78%), Postives = 306/378 (80.95%), Query Frame = 0
 
Query:   50 ESGSDDYKFVLHDALDSSGNNTTHARAARDGFCSQVKKLTVVERETSIATNRRVDLARTALYIAAEDDSLISHSSVPLPVEAFLERLDDLSMGYCSHFGSSFQSSPENFLECMDTYLYINKAFCRHSSKNPSEQRTLYLHSVLTHRLGSAAMLSLVYAEILKMFRIWGILNFDVEIFFPHDSSSNPRGYIKQKSKESDQAHIMTTESLLVKILTELKVAFWPFQLDQDKSLFLRAAEAANCSRRSRNVNESASELASVKAAQHRLERGVWTSVRFGDMRRALSACERLILLNTDPKELRDYSVLLYHSGFYEESLHYLKLYQDAEKSS------NSTSDLEKNAVDMLLIRLNLILMEDGWSSPPHIRNFL-HNSDPW 420
            ++ S D+ F LHDAL+SSG +T+HAR AR GF +Q++KL+ +ERETSI+ NR VDL RTALYIAAEDDSLISHSSVPLPV+AFLERLDDLSMGYCSH+ SS ++S ENFLE ++ YLY+ K F R S+KN +E R LYLHSVLTHR GSA MLSL+Y+EILKM R+WG+L+FDVEIFFPHD    PR Y KQKSKESDQ HIMT + LL +IL  LK AFWPFQ D   SLFL AA AANC  +S  + ES  +LAS KAAQHRL RGVWTSVRFGDMRRALSACERLILL TDPKE+RDYS+LLYH GFYE+SL YLKLYQDA+ SS      NS S LE++AV  L++RLNLI+ME+GW+ P ++RNFL +NS+PW
Sbjct:   61 QNDSADFNFSLHDALESSGIDTSHAREARKGFVTQIQKLSDIERETSISINRCVDLGRTALYIAAEDDSLISHSSVPLPVDAFLERLDDLSMGYCSHYNSSCRTSRENFLESIEKYLYVKKGFRRSSAKNQAEPRALYLHSVLTHRSGSAVMLSLIYSEILKMLRLWGLLDFDVEIFFPHDPHGLPRAYDKQKSKESDQPHIMTVQMLLEEILRNLKDAFWPFQHDHADSLFLSAAHAANCLDKSNGIEESGYQLASAKAAQHRLGRGVWTSVRFGDMRRALSACERLILLQTDPKEMRDYSILLYHCGFYEQSLKYLKLYQDAKSSSSQNESTNSVSSLEEDAVQKLIVRLNLIVMEEGWTRPSYVRNFLGNNSEPW 438
[Close]
BLAST of XM_017370037.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J5WFQ4 (Transglut_core2 domain-containing protein {ECO:0000259|Pfam:PF13369})

HSP 1 Score: 530.02 bits (1364), Expect = 0.000e+0
Identity = 272/426 (63.85%), Postives = 333/426 (78.17%), Query Frame = 0
 
Query:    6 SSSPWILGTSKLSVYENQTRPYFTHTLATK-TKSSTSVNPTI--CGLESGSDDYKFVLHDALDSSGNNTTHARAARDGFCSQVKKLTVVERETSIATNRRVDLARTALYIAAEDDSLISHSSVPLPVEAFLERLDDLSMGYCSHFGSSFQSSPENFLECMDTYLYINKAFCRHSSKNPSEQRTLYLHSVLTHRLGSAAMLSLVYAEILKMFRIWGILNFDVEIFFPHDSSSNPRGYIKQKSKESDQAHIMTTESLLVKILTELKVAFWPFQLDQDKSLFLRAAEAANCSRRSRNVNE-SASELASVKAAQHRLERGVWTSVRFGDMRRALSACERLILLNTDPKELRDYSVLLYHSGFYEESLHYLKLYQDAE------KSSNSTSDLEKNAVDMLLIRLNLILMEDGWSSPPHIRNFL-HNSDPW 420
            +SSPW+L TS L      T P  + + ++K +K  +  +P +  C   +   D+KFVLHDALDSSG  T+ AR AR+GFCSQ++ L+ +ER+TSI+ NR VDL +TAL+IAAEDDSL+SHSSVPLPV+AF+ R  DLSM YCSH+ SSF+SSPE  LE ++ YLY+NKAF R ++++ SE R LYLHSVLTHR GS AMLSL+Y+EILKM R+WG L+FDVEIFFPHD  S PRGY KQKSKESD AHI+T+++LLV+IL  LK AFWPFQ DQ  +LFLRAA AAN   RS N+NE S  +LAS KAAQHRL+RGVWTSV FGDMRRALSACERLILL  DPKELRDYS+LLYH GFYE+SL YLKLYQD +      + S+S + LE++AV+ L+IRLNLILMEDGWS P ++RNFL +NS+PW
Sbjct:    7 ASSPWVLRTSPL------TTPSSSSSSSSKFSKYQSCPSPRLLCCAQANVGSDFKFVLHDALDSSGTPTSLAREAREGFCSQIRHLSGIERQTSISINRCVDLGKTALFIAAEDDSLVSHSSVPLPVDAFISRFGDLSMDYCSHYNSSFRSSPERLLEGLENYLYVNKAFRRTNARHHSEPRALYLHSVLTHRSGSPAMLSLIYSEILKMLRLWGFLDFDVEIFFPHDRHSLPRGYHKQKSKESDNAHILTSQALLVEILRNLKDAFWPFQHDQPGNLFLRAARAANFIDRS-NINEDSGFQLASAKAAQHRLDRGVWTSVHFGDMRRALSACERLILLEADPKELRDYSILLYHCGFYEQSLEYLKLYQDTKSRPLQRQPSDSLAILEEDAVEKLMIRLNLILMEDGWSRPSYVRNFLGNNSEPW 425
[Close]
BLAST of XM_017370037.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1R3IXZ5 (Transglut_core2 domain-containing protein {ECO:0000259|Pfam:PF13369})

HSP 1 Score: 529.25 bits (1362), Expect = 0.000e+0
Identity = 259/378 (68.52%), Postives = 305/378 (80.69%), Query Frame = 0
 
Query:   50 ESGSDDYKFVLHDALDSSGNNTTHARAARDGFCSQVKKLTVVERETSIATNRRVDLARTALYIAAEDDSLISHSSVPLPVEAFLERLDDLSMGYCSHFGSSFQSSPENFLECMDTYLYINKAFCRHSSKNPSEQRTLYLHSVLTHRLGSAAMLSLVYAEILKMFRIWGILNFDVEIFFPHDSSSNPRGYIKQKSKESDQAHIMTTESLLVKILTELKVAFWPFQLDQDKSLFLRAAEAANCSRRSRNVNESASELASVKAAQHRLERGVWTSVRFGDMRRALSACERLILLNTDPKELRDYSVLLYHSGFYEESLHYLKLYQDAEKSS------NSTSDLEKNAVDMLLIRLNLILMEDGWSSPPHIRNFL-HNSDPW 420
            ++ S D+ F LHDAL+SSG +T+HAR AR GF +Q++KL+ +ER+TSI+ NR VDL RTALYIAAEDDSLISHSSVPLPV+AFLERLDDLSMGYCSH+ SS +SS ENFLE ++ YLY+ K F R S+KN +E R LYLHSVLTHR GSA MLSL+Y+EILKM R+WG+L+FDVEIFFPHD    PR Y KQKSKESDQ HIMT + LL +IL  LK AFWPFQ D   SLFL AA AANC  +S  + ES  +LAS KAAQHRL RGVWTSVRFGDMRRALSACERL+LL TDPKE+RDYS+LLYH GFYE+SL YLKLYQDA+ SS      NS S LE++AV  L++RLNLI ME+GW+ P ++RNFL +NS+PW
Sbjct:   60 QNDSADFNFSLHDALESSGIDTSHAREARKGFVTQIQKLSDIERDTSISINRCVDLGRTALYIAAEDDSLISHSSVPLPVDAFLERLDDLSMGYCSHYNSSCRSSRENFLESIEKYLYVKKGFRRSSAKNQAEPRALYLHSVLTHRSGSAVMLSLIYSEILKMLRLWGLLDFDVEIFFPHDPHGLPRAYDKQKSKESDQPHIMTVQMLLEEILRNLKDAFWPFQHDHADSLFLSAAHAANCIDKSNGIEESGYQLASAKAAQHRLGRGVWTSVRFGDMRRALSACERLVLLQTDPKEMRDYSILLYHCGFYEQSLKYLKLYQDAKSSSSQNESTNSISSLEEDAVQKLIVRLNLIAMEEGWTRPSYVRNFLGNNSEPW 437
[Close]
BLAST of XM_017370037.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J5TYG5 (Transglut_core2 domain-containing protein {ECO:0000259|Pfam:PF13369})

HSP 1 Score: 528.094 bits (1359), Expect = 0.000e+0
Identity = 269/424 (63.44%), Postives = 329/424 (77.59%), Query Frame = 0
 
Query:    6 SSSPWILGTSKLSVYENQTRPYFTHTLA-TKTKSSTSVNPTICGLESGSDDYKFVLHDALDSSGNNTTHARAARDGFCSQVKKLTVVERETSIATNRRVDLARTALYIAAEDDSLISHSSVPLPVEAFLERLDDLSMGYCSHFGSSFQSSPENFLECMDTYLYINKAFCRHSSKNPSEQRTLYLHSVLTHRLGSAAMLSLVYAEILKMFRIWGILNFDVEIFFPHDSSSNPRGYIKQKSKESDQAHIMTTESLLVKILTELKVAFWPFQLDQDKSLFLRAAEAANCSRRSRNVNE-SASELASVKAAQHRLERGVWTSVRFGDMRRALSACERLILLNTDPKELRDYSVLLYHSGFYEESLHYLKLYQDAE------KSSNSTSDLEKNAVDMLLIRLNLILMEDGWSSPPHIRNFL-HNSDPW 420
            +S PW+L TS L+   + +    + +   +K +S  S     C   +   D+KFVLHDALDSSG  T+ AR AR+GFCSQ++ L+ +ER+TSI+ NR VDL +TAL+IAAEDDSL+SHSSVPLPV+AF+ R  DLSM YCSH+ SSF+SSPE  LE ++ YLY+NKAF R ++++ SE R LYLHSVLTHR GS AMLSL+Y+EILKM R+WG L+FDVEIFFPHD  S PRGY KQKSKESD AHI+T+++LLV+IL  LK AFWPFQ DQ  +LFLRAA AAN   RS N+NE S  +LAS KAAQHRL+RGVWTSV FGDMRRALSACERLILL  DPKELRDYS+LLYH GFYE+SL YLKLYQD +      + S+S + LE++AV+ L+IRLNLILMEDGWS P ++RNFL +NS+PW
Sbjct:    7 ASPPWVLRTSPLTTPSSSSSSSSSSSSKFSKYQSCPSPRLLCCAQANVGSDFKFVLHDALDSSGTPTSLAREAREGFCSQIRHLSGIERQTSISINRCVDLGKTALFIAAEDDSLVSHSSVPLPVDAFISRFGDLSMDYCSHYNSSFRSSPERLLEGLENYLYVNKAFRRTNARHHSEPRALYLHSVLTHRSGSPAMLSLIYSEILKMLRLWGFLDFDVEIFFPHDRHSLPRGYHKQKSKESDNAHILTSQALLVEILRNLKDAFWPFQHDQPGNLFLRAARAANFIDRS-NINEDSGFQLASAKAAQHRLDRGVWTSVHFGDMRRALSACERLILLEADPKELRDYSILLYHCGFYEQSLEYLKLYQDTKSRPLQRQPSDSLAILEEDAVEKLMIRLNLILMEDGWSRPSYVRNFLGNNSEPW 429
Match NameStatsDescription
A0A2R6R354E-Value: 0.000e+0, PID: 70.90(Alpha-1,3-mannosyltransferase {ECO:0000313|EMBL:P... [more]
D7UBN4E-Value: 0.000e+0, PID: 64.95Transglut_core2 domain-containing protein {ECO:000... [more]
A0A6P6U5A6E-Value: 0.000e+0, PID: 63.70(uncharacterized protein LOC113707289 {ECO:0000313... [more]
A0A5J5B3N5E-Value: 0.000e+0, PID: 69.76Transglut_core2 domain-containing protein {ECO:000... [more]
A0A6P6VXB8E-Value: 0.000e+0, PID: 63.23(uncharacterized protein LOC113727318 {ECO:0000313... [more]
A0A068VDN5E-Value: 0.000e+0, PID: 63.00Transglut_core2 domain-containing protein {ECO:000... [more]
A0A1R3HSP0E-Value: 0.000e+0, PID: 68.78Transglut_core2 domain-containing protein {ECO:000... [more]
A0A6J5WFQ4E-Value: 0.000e+0, PID: 63.85Transglut_core2 domain-containing protein {ECO:000... [more]
A0A1R3IXZ5E-Value: 0.000e+0, PID: 68.52Transglut_core2 domain-containing protein {ECO:000... [more]
A0A6J5TYG5E-Value: 0.000e+0, PID: 63.44Transglut_core2 domain-containing protein {ECO:000... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.