Resource Type:
Polypeptide
Name:
XM_017370033.1
Identifier:
XM_017370033.1-protein
Sequence:
MTTPNSFLPILLFTAFLLSPSQASNIDPKCDVPESGSTLQVLHVNSPCSP
FRPQKQPSWEESVLKMQSDDTTRLLFLSNLVAGRSVAPVASGRGILQTPT
YIVRARVGTPPQTFLMAVDNSNDAAWLPCSGCTGCASTTFASDKSASFKT
LGCKASQCKQVAHQTTCTATACSFNTTYGSSSIAANLSQDSLKLATDVIP
GYTFGCIQKTTGGSVPPQGLLGLGRGPLSLLSQTQSLYRSTFSYCLPSFK
SLNFSGSLRLGPVQPVRMKFTQLLRNPSRSSLYYVNLVAIKVGRKIVDIP
ASALAFDATNGAGTIIDSGTVFTRLVEPAYIAVRNEFRRRMGKAAVVSSL
GGFDTCYSVPITIPTITFMFKGINMTLPQDNFLIHSASSSITCLAMAASP
NNVNSVLNVIASMQQQNLRVLFDVPNSKLGMARETCT
Sequence Length:
437
Sequence Checksum:
5d9563d47b4cfc7b5f0223c65aef507b
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017370033.1, derives from mRNA, XM_017370033.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017370033.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
back to top
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017370033.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834Z2A2 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8398245.1}))
HSP 1 Score: 618.616 bits (1594), Expect = 0.000e+0
Identity = 302/437 (69.11%), Postives = 357/437 (81.69%), Query Frame = 0
Match: A0A834Z2A2 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8398245.1}))
HSP 1 Score: 618.616 bits (1594), Expect = 0.000e+0
Identity = 302/437 (69.11%), Postives = 357/437 (81.69%), Query Frame = 0
Query: 2 TTPNSFLPILLFTAFLLSPSQASNIDPKCDVPESGSTLQVLHVNSPCSPFRPQKQPSWEESVLKMQSDDTTRLLFLSNLVAGRSVAPVASGRGILQTPTYIVRARVGTPPQTFLMAVDNSNDAAWLPCSGCTGCASTTFASDKSASFKTLGCKASQCKQVAHQTTCTATACSFNTTYGSSSIAANLSQDSLKLATDVIPGYTFGCIQKTTGGSVPPQGLLGLGRGPLSLLSQTQSLYRSTFSYCLPSFKSLNFSGSLRLGPV-QPVRMKFTQLLRNPSRSSLYYVNLVAIKVGRKIVDIPASALAFDATNGAGTIIDSGTVFTRLVEPAYIAVRNEFRRRMGKAAVVSSLGGFDTCYSVPITIPTITFMFKGINMTLPQDNFLIHSASSSITCLAMAASPNNVNSVLNVIASMQQQNLRVLFDVPNSKLGMARETCT 437
T P S L +L L PSQ S D C+ P+ GSTLQV+HV SPCSPFRP K SWE+ VL + + D RLL+LS LVA +SV P+ASGR +Q+PTYIVRA++GTP +T MA+D S+DAAW+PC+GC GC + FAS KS ++K+LGC+ +QCKQV + +C TACSFN TYGSSSIAA LSQD++ LATD IP Y+FGCIQK G SVPPQGLLGLGRGP+SLLSQTQ+LY+STFSYCLP+FKSLNFSGSLRLGPV QP+R+K+T LL+NP RSSLYYVN++ I+VGRKIVDIP SALAF+ GAGTI DSGTVF RLV+PAYIAVR+EFRRR+ K A VSSLGGFDTCYSVPI P IT +F G+N+TLP DN LIHS++ SITCLAMAA+P+NVNSVLNVIA+MQQQN RVLFDVPNS+LG+ARE CT
Sbjct: 3 TPPPSLLSYILLALMCLYPSQGS--DHICESPDHGSTLQVMHVYSPCSPFRPAKSLSWEDMVLDIAAKDEARLLYLSGLVAAKSVVPIASGRQTIQSPTYIVRAKIGTPARTMFMAMDTSSDAAWIPCTGCIGCPPSLFASAKSTTYKSLGCQTAQCKQVPNP-SCVGTACSFNLTYGSSSIAAALSQDTITLATDPIPNYSFGCIQKAVGSSVPPQGLLGLGRGPMSLLSQTQNLYKSTFSYCLPNFKSLNFSGSLRLGPVGQPLRIKYTPLLKNPRRSSLYYVNMIGIRVGRKIVDIPPSALAFNPITGAGTIFDSGTVFARLVQPAYIAVRDEFRRRI-KGATVSSLGGFDTCYSVPIAAPPITLLFTGMNVTLPPDNILIHSSAGSITCLAMAAAPDNVNSVLNVIANMQQQNHRVLFDVPNSRLGVARELCT 435
BLAST of XM_017370033.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834YXX1 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8395700.1}))
HSP 1 Score: 615.535 bits (1586), Expect = 0.000e+0
Identity = 300/421 (71.26%), Postives = 356/421 (84.56%), Query Frame = 0
Match: A0A834YXX1 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8395700.1}))
HSP 1 Score: 615.535 bits (1586), Expect = 0.000e+0
Identity = 300/421 (71.26%), Postives = 356/421 (84.56%), Query Frame = 0
Query: 18 LSPSQASNIDPKCDVPESGSTLQVLHVNSPCSPFRPQKQPSWEESVLKMQSDDTTRLLFLSNLVAGRSVAPVASGRGILQTPTYIVRARVGTPPQTFLMAVDNSNDAAWLPCSGCTGCASTTFASDKSASFKTLGCKASQCKQVAHQTTCTATACSFNTTYGSSSIAANLSQDSLKLATDVIPGYTFGCIQKTTGGSVPPQGLLGLGRGPLSLLSQTQSLYRSTFSYCLPSFKSLNFSGSLRLGPV-QPVRMKFTQLLRNPSRSSLYYVNLVAIKVGRKIVDIPASALAFDATNGAGTIIDSGTVFTRLVEPAYIAVRNEFRRRMGKAAVVSSLGGFDTCYSVPITIPTITFMFKGINMTLPQDNFLIHSASSSITCLAMAASPNNVNSVLNVIASMQQQNLRVLFDVPNSKLGMARETCT 437
L+PSQ S++ C+ P+ GSTL+V+HV SPCSPFRP K SWE++VL M + D RL +LS+LVA +SV P+ASGR I+Q+PTYIVRA++GTPPQT LMA+D S+DAAW+PC GC GC+S F+S +S ++KTLGC+A QC QV + T C TACSFN TYGSSSIAAN+SQD++ LA D +P Y+FGCIQK TG SVPPQGLLGLGRGP+SLLSQTQ+LY+STFSYCLP+FKSLNFSGSLRLGPV QP+R+K+T LL+NP RSSLYYVN+V I+VGRKIVDIP SALAF+ T GAGTI DSGTVFTRLV PAY AVR+EFRRR+ +VSSLGGFDTCYSVPI PTIT MF G+N+TLP DN LIHS + SITCLAMA++P+NVNSVLNVIA+MQQQN RVLFDVPNS+LG+ARE CT
Sbjct: 20 LTPSQGSDL--TCESPDHGSTLKVMHVYSPCSPFRPSKSLSWEDTVLDMAAKDEARLSYLSSLVAAKSVVPIASGRQIIQSPTYIVRAQIGTPPQTMLMALDTSSDAAWIPCDGCVGCSSNLFSSSQSTTYKTLGCQAPQCNQVPNPT-CAGTACSFNLTYGSSSIAANVSQDTITLAMDAVPNYSFGCIQKATGTSVPPQGLLGLGRGPISLLSQTQTLYQSTFSYCLPNFKSLNFSGSLRLGPVGQPIRIKYTPLLKNPRRSSLYYVNMVGIRVGRKIVDIPPSALAFNTTTGAGTIFDSGTVFTRLVAPAYNAVRDEFRRRIKGGGIVSSLGGFDTCYSVPIVAPTITLMFTGMNVTLPVDNILIHSTAGSITCLAMASAPDNVNSVLNVIANMQQQNHRVLFDVPNSRLGVAREPCT 437
BLAST of XM_017370033.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZK15 (Peptidase A1 domain-containing protein {ECO:0000259|PROSITE:PS51767})
HSP 1 Score: 614.379 bits (1583), Expect = 0.000e+0
Identity = 310/438 (70.78%), Postives = 367/438 (83.79%), Query Frame = 0
Match: A0A5J4ZK15 (Peptidase A1 domain-containing protein {ECO:0000259|PROSITE:PS51767})
HSP 1 Score: 614.379 bits (1583), Expect = 0.000e+0
Identity = 310/438 (70.78%), Postives = 367/438 (83.79%), Query Frame = 0
Query: 1 MTTPNSFLPILLFTAFLLSPSQASNIDPKCDVPESGSTLQVLHVNSPCSPFRPQKQPSWEESVLKMQSDDTTRLLFLSNLVAGRSVAPVASGRGILQTPTYIVRARVGTPPQTFLMAVDNSNDAAWLPCSGCTGCASTTFASDKSASFKTLGCKASQCKQVAHQTTCTATACSFNTTYGSSSIAANLSQDSLKLATDVIPGYTFGCIQKTTGGSVPPQGLLGLGRGPLSLLSQTQSLYRSTFSYCLPSFKSLNFSGSLRLGPV-QPVRMKFTQLLRNPSRSSLYYVNLVAIKVGRKIVDIPASALAFDATNGAGTIIDSGTVFTRLVEPAYIAVRNEFRRRMGKAAVVSSLGGFDTCYSVPITIPTITFMFKGINMTLPQDNFLIHSASSSITCLAMAASPNNVNSVLNVIASMQQQNLRVLFDVPNSKLGMARETCT 437
MTT L LLF+ LL S A ++ CD+PE G+ L++ HV SPCSPFRP + SWEESV++MQ+ D RL +LS+LVAG+SV P+A+GR I+Q+PTYIV+A+VGTPPQT LMA+D SNDAAW+PC+GC GC+ST FA +S +FKTLGC+A QCKQV + TC +AC FN TYGSS+IAANLSQD++KLATD + GYTFGCIQK TG SVPPQGLLGLGRGPLSLLSQTQSLY+STFSYCLPSFK+LNFSGSLRLGP+ QP R+K+TQLLRNP RSSLYYVN++ I+VGR++VDIP +ALAFD +GAGTIIDSGTVFTRLV+PAYIAVR FR R+G VSSLGGFDTCYSVPI PTIT MF G+N+TLP DN LIHS S SITCLAMAA+P+NVNSV+NVIA+MQQQN RVLFD+PNS+LG+AR+ CT
Sbjct: 51 MTTSVPTLQTLLFSQALLFLSVAQGLNTNCDIPEHGANLRLYHVYSPCSPFRPSEPVSWEESVVQMQAKDQARLQYLSSLVAGKSVVPIAAGRQIIQSPTYIVKAKVGTPPQTMLMALDTSNDAAWIPCTGCVGCSSTVFAPPQSTTFKTLGCQADQCKQVPN-PTCDGSACGFNLTYGSSTIAANLSQDTIKLATDEVQGYTFGCIQKATGSSVPPQGLLGLGRGPLSLLSQTQSLYQSTFSYCLPSFKALNFSGSLRLGPIGQPQRIKYTQLLRNPRRSSLYYVNMIGIRVGRQVVDIPQTALAFDPVSGAGTIIDSGTVFTRLVQPAYIAVREAFRNRVGSNMTVSSLGGFDTCYSVPIVAPTITLMFTGMNVTLPTDNILIHSTSGSITCLAMAAAPDNVNSVVNVIATMQQQNHRVLFDLPNSRLGVARQLCT 487
BLAST of XM_017370033.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: B9RG92 ((Aspartic proteinase nepenthesin-1, putative {ECO:0000313|EMBL:EEF49547.1}) (3.4.23.3 {ECO:0000313|EMBL:EEF49547.1}))
HSP 1 Score: 613.224 bits (1580), Expect = 0.000e+0
Identity = 300/428 (70.09%), Postives = 356/428 (83.18%), Query Frame = 0
Match: B9RG92 ((Aspartic proteinase nepenthesin-1, putative {ECO:0000313|EMBL:EEF49547.1}) (3.4.23.3 {ECO:0000313|EMBL:EEF49547.1}))
HSP 1 Score: 613.224 bits (1580), Expect = 0.000e+0
Identity = 300/428 (70.09%), Postives = 356/428 (83.18%), Query Frame = 0
Query: 11 LLFTAFLLSPSQASNIDPKCDVPESGSTLQVLHVNSPCSPFRPQKQPSWEESVLKMQSDDTTRLLFLSNLVAGRSVAPVASGRGILQTPTYIVRARVGTPPQTFLMAVDNSNDAAWLPCSGCTGCASTTFASDKSASFKTLGCKASQCKQVAHQTTCTATACSFNTTYGSSSIAANLSQDSLKLATDVIPGYTFGCIQKTTGGSVPPQGLLGLGRGPLSLLSQTQSLYRSTFSYCLPSFKSLNFSGSLRLGPV-QPVRMKFTQLLRNPSRSSLYYVNLVAIKVGRKIVDIPASALAFDATNGAGTIIDSGTVFTRLVEPAYIAVRNEFRRRMGKAAVVSSLGGFDTCYSVPITIPTITFMFKGINMTLPQDNFLIHSASSSITCLAMAASPNNVNSVLNVIASMQQQNLRVLFDVPNSKLGMARETCT 437
L F F L+ Q +++PKC + + GS LQV HV SPCSPF P K WEESVL+MQ+ D RL FLS+LVA +SV P+ASGR I+Q+PTYIVRA++GTP QT L+A+D SNDAAW+PCSGC GC+ST F + KS +FKT+GC+A QCKQV + + C +AC+FN TYGSSSIAANLSQD + LATD IP YTFGC+ + TG S+PPQGLLGLGRGP+SLLSQTQ+LY+STFSYCLPSF+SLNFSGSLRLGPV QP R+K T LL+NP RSSLYYVNL+AI+VGR++VDIP SALAF+ T GAGTI DSGTVFTRLV PAY AVR+ FR+R+G A V+SLGGFDTCY+ PI PTITFMF G+N+TLP DN LIHS +SSITCLAMAA+P+NVNSVLNVIA+MQQQN R+LFDVPNS+LG+ARE CT
Sbjct: 8 LAFLFFTLA--QGMHLNPKCGIQDQGSNLQVFHVYSPCSPFWPSKPLKWEESVLQMQAKDQARLQFLSSLVARKSVVPIASGRQIVQSPTYIVRAKIGTPAQTMLLAMDTSNDAAWIPCSGCVGCSSTVFNNVKSTTFKTVGCEAPQCKQVPN-SKCGGSACAFNMTYGSSSIAANLSQDVVTLATDSIPSYTFGCLTEATGSSIPPQGLLGLGRGPMSLLSQTQNLYQSTFSYCLPSFRSLNFSGSLRLGPVGQPKRIKTTPLLKNPRRSSLYYVNLMAIRVGRRVVDIPPSALAFNPTTGAGTIFDSGTVFTRLVAPAYTAVRDAFRKRVGN-ATVTSLGGFDTCYTSPIVAPTITFMFSGMNVTLPPDNLLIHSTASSITCLAMAAAPDNVNSVLNVIANMQQQNHRILFDVPNSRLGVAREPCT 431
BLAST of XM_017370033.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2N9FYV8 (Peptidase A1 domain-containing protein {ECO:0000259|PROSITE:PS51767})
HSP 1 Score: 609.372 bits (1570), Expect = 0.000e+0
Identity = 316/429 (73.66%), Postives = 364/429 (84.85%), Query Frame = 0
Match: A0A2N9FYV8 (Peptidase A1 domain-containing protein {ECO:0000259|PROSITE:PS51767})
HSP 1 Score: 609.372 bits (1570), Expect = 0.000e+0
Identity = 316/429 (73.66%), Postives = 364/429 (84.85%), Query Frame = 0
Query: 10 ILLFTAFLLSPSQASNIDPKCDVPESGSTLQVLHVNSPCSPFRPQKQPSWEESVLKMQSDDTTRLLFLSNLVAGRSVAPVASGRGILQTPTYIVRARVGTPPQTFLMAVDNSNDAAWLPCSGCTGCASTTFASDKSASFKTLGCKASQCKQVAHQTTCTATACSFNTTYGSSSIAANLSQDSLKLATDVIPGYTFGCIQKTTGGSVPPQGLLGLGRGPLSLLSQTQSLYRSTFSYCLPSFKSLNFSGSLRLGPV-QPVRMKFTQLLRNPSRSSLYYVNLVAIKVGRKIVDIPASALAFDATNGAGTIIDSGTVFTRLVEPAYIAVRNEFRRRMGKAAVVSSLGGFDTCYSVPITIPTITFMFKGINMTLPQDNFLIHSASSSITCLAMAASPNNVNSVLNVIASMQQQNLRVLFDVPNSKLGMARETCT 437
ILLF+ LL S ++PKC+ + GSTLQV HV SPCSPFRP K SWE+SVLKMQ+DD TRL FLSNLV +SV P+ASGR I+Q+PTYIVRA++GTP QT L+A+D SNDAAW+P +GC GC+ST FA KS +FK LGC+A+QCKQV + TC ++CSFN TYG S+IAANLSQD++ LATD IP YTFG IQKTTG SVPPQGLLGLGRGPLSLLSQTQ+LY STFSYCLPSFKS+NFSGSLRLGPV QP+R+K+T LL+NP RSSLYYVNLVAI+VGRKIVDIP SALAF+ T GAGTI DSGTVFTRLV PAYIAVR+EFRRR+ K A V+SLGGFDTCYSVPI PTITF+F G+N+TLP DN LIHS + SITCLAMAA+P+NVNSVLNVIA+MQQQN R+LFDVPNS+LG+ARE CT
Sbjct: 5 ILLFSLALLYISLVQGLNPKCETSDQGSTLQVFHVYSPCSPFRPSKPVSWEDSVLKMQADDQTRLQFLSNLVGKKSVVPIASGRQIIQSPTYIVRAKIGTPAQTLLLAMDTSNDAAWVPSTGCVGCSSTLFAPIKSTTFKPLGCEAAQCKQVPNP-TCGGSSCSFNLTYGGSTIAANLSQDTITLATDPIPFYTFGIIQKTTGSSVPPQGLLGLGRGPLSLLSQTQNLYHSTFSYCLPSFKSVNFSGSLRLGPVGQPLRIKYTPLLKNPRRSSLYYVNLVAIRVGRKIVDIPPSALAFNPTTGAGTIFDSGTVFTRLVAPAYIAVRDEFRRRV-KVATVTSLGGFDTCYSVPIVAPTITFLFTGMNVTLPPDNLLIHSTAGSITCLAMAAAPDNVNSVLNVIANMQQQNHRLLFDVPNSRLGVARELCT 431
BLAST of XM_017370033.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5B454 (Peptidase A1 domain-containing protein {ECO:0000259|PROSITE:PS51767})
HSP 1 Score: 607.06 bits (1564), Expect = 0.000e+0
Identity = 307/411 (74.70%), Postives = 356/411 (86.62%), Query Frame = 0
Match: A0A5J5B454 (Peptidase A1 domain-containing protein {ECO:0000259|PROSITE:PS51767})
HSP 1 Score: 607.06 bits (1564), Expect = 0.000e+0
Identity = 307/411 (74.70%), Postives = 356/411 (86.62%), Query Frame = 0
Query: 28 PKCDVPESGSTLQVLHVNSPCSPFRPQKQPSWEESVLKMQSDDTTRLLFLSNLVAGRSVAPVASGRGILQTPTYIVRARVGTPPQTFLMAVDNSNDAAWLPCSGCTGCASTTFASDKSASFKTLGCKASQCKQVAHQTTCTATACSFNTTYGSSSIAANLSQDSLKLATDVIPGYTFGCIQKTTGGSVPPQGLLGLGRGPLSLLSQTQSLYRSTFSYCLPSFKSLNFSGSLRLGPV-QPVRMKFTQLLRNPSRSSLYYVNLVAIKVGRKIVDIPASALAFDATNGAGTIIDSGTVFTRLVEPAYIAVRNEFRRRMGKAAVVSSLGGFDTCYSVPITIPTITFMFKGINMTLPQDNFLIHSASSSITCLAMAASPNNVNSVLNVIASMQQQNLRVLFDVPNSKLGMARETCT 437
PKCD PE GSTL+VLHV SPCSPFRP + SWEESVL+MQ+ D RL FLS+LVAG+SV P+ASGR ++Q+PTYIVRA +GTPPQT LMA+D SNDAAW+PC+GC GC+S F KS +FKTL C+A+QCKQV + TC ++CSFN TYGSSSIAANLSQD++KLATD +PGYTFGCIQK+TG SVPPQGLLGLGRGPLSLLSQTQ+LY+STFSYCLPSFKS NFSGSLRLGP+ QP R+K+TQLLRNP RSSLYYVNL+AI+VGR++VDIP SALAF+ GAGTI DSG VFTRLV+PAYIAVR+ +R+R+G A VSSLGGFDTCYSVPI PTITFMF G+N+TLP DN LIHS + ITCLAMAA+P+NVNS+LNVIA+MQQQN RVLFDVPNS+LG+ARE CT
Sbjct: 28 PKCDTPEHGSTLRVLHVYSPCSPFRPSEPLSWEESVLQMQAKDQARLQFLSSLVAGKSVVPIASGRQVIQSPTYIVRATIGTPPQTMLMAMDTSNDAAWIPCTGCVGCSSAVFDPVKSTTFKTLNCQAAQCKQVPN-PTCGGSSCSFNMTYGSSSIAANLSQDTVKLATDDVPGYTFGCIQKSTGSSVPPQGLLGLGRGPLSLLSQTQNLYQSTFSYCLPSFKSPNFSGSLRLGPIGQPKRIKYTQLLRNPRRSSLYYVNLIAIRVGRRVVDIPPSALAFNPVTGAGTIFDSGVVFTRLVQPAYIAVRDAYRKRVGN-ATVSSLGGFDTCYSVPIASPTITFMFTGMNVTLPPDNLLIHSTAGGITCLAMAAAPDNVNSILNVIANMQQQNHRVLFDVPNSRLGVARELCT 436
BLAST of XM_017370033.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2I4GZU9 ((aspartyl protease AED3-like {ECO:0000313|RefSeq:XP_018849417.1}))
HSP 1 Score: 607.06 bits (1564), Expect = 0.000e+0
Identity = 314/433 (72.52%), Postives = 364/433 (84.06%), Query Frame = 0
Match: A0A2I4GZU9 ((aspartyl protease AED3-like {ECO:0000313|RefSeq:XP_018849417.1}))
HSP 1 Score: 607.06 bits (1564), Expect = 0.000e+0
Identity = 314/433 (72.52%), Postives = 364/433 (84.06%), Query Frame = 0
Query: 7 FLPILLFTAFLLSPSQASNIDPKCDVPESGSTLQVLHVNSPCSPFRPQKQPSWEESVLKMQSDDTTRLLFLSNLVAGRSVAPVASGRGILQTPTYIVRARVGTPPQTFLMAVDNSNDAAWLPCSGCTGCASTT-FASDKSASFKTLGCKASQCKQVAHQTTCTATACSFNTTYGSSSIAANLSQDSLKLATDVIPGYTFGCIQKTTGGSVPPQGLLGLGRGPLSLLSQTQSLYRSTFSYCLPSFKSLNFSGSLRLGPV-QPVRMKFTQLLRNPSRSSLYYVNLVAIKVGRKIVDIPASALAFDATNGAGTIIDSGTVFTRLVEPAYIAVRNEFRRRMGKAAVVSSLGGFDTCYSVPITIPTITFMFKGINMTLPQDNFLIHSASSSITCLAMAASPNNVNSVLNVIASMQQQNLRVLFDVPNSKLGMARETCT 437
FL + LL S A ++PKC+ + GSTLQ+ HV SPCSPF+P K SW+ESVL+MQ D RL +LS+LVA +SV P+ASGR I+Q+PTYIVRA++GTP QTFL+A+D SNDAAW+PCSGC GC S+T FASDKS +FKTLGC+ +QCKQV + TC +ACSFN TYG S+IAANLSQD++ LATD +P YTFGCIQK TG S PPQGLLGLGRGPLSLLSQTQ+LY+STFSYCLPSFKSLNFSGSLRLGPV QP R+K+T LL+NP RSSLYYVNL+AI+VGR+IVDIPA ALAF+ T GAGTIIDSGTVFTRLV+PAYIAVR+EFRRR+ KA VSSLGGFDTCYS PI PTITFMF G+N+TLP DN LIHS + S TCLAMAA+P+NVNSVLNVIA+MQQQN RVLFDVPNS+LG+ARE CT
Sbjct: 8 FLVSHVLAVTLLYVSLAQGLNPKCETADHGSTLQIFHVYSPCSPFKPSKPLSWDESVLQMQVKDQARLQYLSSLVARKSVVPIASGRQIIQSPTYIVRAKIGTPAQTFLLAMDTSNDAAWIPCSGCVGCPSSTLFASDKSTTFKTLGCEVAQCKQVPNP-TCGGSACSFNLTYGGSTIAANLSQDNITLATDSVPDYTFGCIQKVTGSSAPPQGLLGLGRGPLSLLSQTQNLYQSTFSYCLPSFKSLNFSGSLRLGPVGQPKRIKYTPLLKNPRRSSLYYVNLIAIRVGRRIVDIPADALAFNPTTGAGTIIDSGTVFTRLVQPAYIAVRDEFRRRVNKAG-VSSLGGFDTCYSDPIVAPTITFMFSGMNVTLPPDNILIHSTAGSTTCLAMAAAPDNVNSVLNVIANMQQQNHRVLFDVPNSRLGVARELCT 438
BLAST of XM_017370033.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: T2DNA5 ((Aspartic proteinase nepenthesin-1-like protein {ECO:0000313|EMBL:AGV54394.1}))
HSP 1 Score: 605.52 bits (1560), Expect = 0.000e+0
Identity = 289/415 (69.64%), Postives = 346/415 (83.37%), Query Frame = 0
Match: T2DNA5 ((Aspartic proteinase nepenthesin-1-like protein {ECO:0000313|EMBL:AGV54394.1}))
HSP 1 Score: 605.52 bits (1560), Expect = 0.000e+0
Identity = 289/415 (69.64%), Postives = 346/415 (83.37%), Query Frame = 0
Query: 26 IDPKCDVPESGSTLQVLHVNSPCSPFRPQKQPSWEESVLKMQSDDTTRLLFLSNLVAGRSVAPVASGRGILQTPTYIVRARVGTPPQTFLMAVDNSNDAAWLPCSGCTGCASTTFASDKSASFKTLGCKASQCKQVAHQTTCTATACSFNTTYGSSSIAANLSQDSLKLATDVIPGYTFGCIQKTTGGSVPPQGLLGLGRGPLSLLSQTQSLYRSTFSYCLPSFKSLNFSGSLRLGPV-QPVRMKFTQLLRNPSRSSLYYVNLVAIKVGRKIVDIPASALAFDATNGAGTIIDSGTVFTRLVEPAYIAVRNEFRRRMGKAA--VVSSLGGFDTCYSVPITIPTITFMFKGINMTLPQDNFLIHSASSSITCLAMAASPNNVNSVLNVIASMQQQNLRVLFDVPNSKLGMARETCT 437
++PKCD + GSTLQV HV SPCSPFRP K SWEESVL++Q+ D +R+ FL++LVAGRSV P+ASGR I+Q+PTYIVRA++GTPPQT L+A+D SNDAAW+PC+ C GC ST FA +KS +FK + C A +C QV + +C ++CSFN TYG S+ ANL QD++ L T IP YTFGC+ KTTG S PPQGLLGLGR PLSLLSQTQ+LY+STFSYCLPSFKSLNFSGSLRLGPV QP+R+K+T LL+NP RSSLYYVNLVAI+VGR++VDIP AL F+ GAGTI DSGTVFTRLV PAY+AVR+EFRRR+G A V+SLGGFDTCY+VPI PTITF+F G+N+TLPQDN LIHS++ S TCLAMA++P+NVNSVLNVIA+MQQQN RVLFDVPNS+LG+ARE CT
Sbjct: 22 LNPKCDTQDHGSTLQVFHVFSPCSPFRPSKALSWEESVLQLQAKDQSRMQFLASLVAGRSVVPIASGRQIIQSPTYIVRAKIGTPPQTLLLAMDTSNDAAWIPCTACDGCTSTLFAPEKSTTFKNVSCGAPECHQVPNP-SCGNSSCSFNLTYGGSTHGANLVQDTVTLGTGPIPAYTFGCVAKTTGPSTPPQGLLGLGRSPLSLLSQTQNLYQSTFSYCLPSFKSLNFSGSLRLGPVAQPIRIKYTPLLKNPRRSSLYYVNLVAIRVGRRVVDIPPEALGFNPATGAGTIFDSGTVFTRLVAPAYVAVRDEFRRRVGGKANLTVTSLGGFDTCYTVPIVAPTITFIFSGMNVTLPQDNILIHSSAGSTTCLAMASAPDNVNSVLNVIANMQQQNHRVLFDVPNSRLGVARELCT 435
BLAST of XM_017370033.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YZA6 (Peptidase A1 domain-containing protein {ECO:0000259|PROSITE:PS51767})
HSP 1 Score: 603.594 bits (1555), Expect = 0.000e+0
Identity = 312/433 (72.06%), Postives = 365/433 (84.30%), Query Frame = 0
Match: A0A5B6YZA6 (Peptidase A1 domain-containing protein {ECO:0000259|PROSITE:PS51767})
HSP 1 Score: 603.594 bits (1555), Expect = 0.000e+0
Identity = 312/433 (72.06%), Postives = 365/433 (84.30%), Query Frame = 0
Query: 10 ILLFTAFLLSPSQASNIDPK-CDVP-ESGSTLQVLHVNSPCSPFRPQKQPSWEESVLKMQSDDTTRLLFLSNL--VAGRSVAPVASGRGILQTPTYIVRARVGTPPQTFLMAVDNSNDAAWLPCSGCTGCASTTFASDKSASFKTLGCKASQCKQVAHQTTCTATACSFNTTYGSSSIAANLSQDSLKLATDVIPGYTFGCIQKTTGGSVPPQGLLGLGRGPLSLLSQTQSLYRSTFSYCLPSFKSLNFSGSLRLGPV-QPVRMKFTQLLRNPSRSSLYYVNLVAIKVGRKIVDIPASALAFDATNGAGTIIDSGTVFTRLVEPAYIAVRNEFRRRMGKAAVVSSLGGFDTCYSVPITIPTITFMFKGINMTLPQDNFLIHSASSSITCLAMAASPNNVNSVLNVIASMQQQNLRVLFDVPNSKLGMARETCT 437
+L+F+ LL S A ++PK CD P E GSTLQVLHV+SPCSPFRP SWEESVL+M+ D RL +LS+L VAG+SV P+ASGR ++Q+P YIVRA++GTPPQT LMA+D SNDAAW+PC+GC GC ST FA KS +FK+L C+A+QCKQV + T C ACSFN TYG SSIAANLSQD++KLAT+ IPGYTFGCIQKTTGGSVPPQGLLGLGRGPLSLLSQTQSLY+STFSYCLP F+S+NFSGSLRLGP+ QP R+K+TQLLRNP RSSLYYVNL+ I+VGR++VDIP SALAF+ GAGTI DSG VFTRLV+PAYIAVR+ +R+R+G A VS+LGGFDTCYSVPI PTITFMF G+N+TLP DN LIHS + S TCLAMAA+P+NVNSVLNVIA+MQQQN RVLFDVPNS+LG+ARE CT
Sbjct: 12 VLVFSLALLFFSVAQGLNPKYCDTPQEHGSTLQVLHVHSPCSPFRPSASVSWEESVLEMEGKDQARLQYLSSLLAVAGKSVVPIASGRQVIQSPAYIVRAKIGTPPQTMLMAMDTSNDAAWIPCTGCLGCPSTLFAPAKSTTFKSLNCQAAQCKQVPNPT-CGGGACSFNMTYGGSSIAANLSQDTVKLATNDIPGYTFGCIQKTTGGSVPPQGLLGLGRGPLSLLSQTQSLYKSTFSYCLPGFRSINFSGSLRLGPIGQPKRIKYTQLLRNPRRSSLYYVNLIGIRVGRRVVDIPPSALAFNPVTGAGTIFDSGVVFTRLVQPAYIAVRDAYRKRVGN-ATVSALGGFDTCYSVPIAAPTITFMFTGMNVTLPPDNLLIHSTAGSTTCLAMAAAPDNVNSVLNVIANMQQQNHRVLFDVPNSRLGVARELCT 442
BLAST of XM_017370033.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P5SSQ4 ((aspartyl protease AED3-like {ECO:0000313|RefSeq:XP_021819229.1}))
HSP 1 Score: 602.823 bits (1553), Expect = 0.000e+0
Identity = 310/434 (71.43%), Postives = 364/434 (83.87%), Query Frame = 0
Match: A0A6P5SSQ4 ((aspartyl protease AED3-like {ECO:0000313|RefSeq:XP_021819229.1}))
HSP 1 Score: 602.823 bits (1553), Expect = 0.000e+0
Identity = 310/434 (71.43%), Postives = 364/434 (83.87%), Query Frame = 0
Query: 11 LLFTAF-----LLSPSQASNIDPKC-DVPESGSTLQVLHVNSPCSPFRPQKQPSWEESVLKMQSDDTTRLLFLSNLVAGRSVAPVASGRGILQTPTYIVRARVGTPPQTFLMAVDNSNDAAWLPCSGCTGCASTTFASDKSASFKTLGCKASQCKQVAHQTTCTATACSFNTTYGSSSIAANLSQDSLKLATDVIPGYTFGCIQKTTGGSVPPQGLLGLGRGPLSLLSQTQSLYRSTFSYCLPSFKSLNFSGSLRLGPV-QPVRMKFTQLLRNPSRSSLYYVNLVAIKVGRKIVDIPASALAFDATNGAGTIIDSGTVFTRLVEPAYIAVRNEFRRRMGKAAVVSSLGGFDTCYSVPITIPTITFMFKGINMTLPQDNFLIHSASSSITCLAMAASPNNVNSVLNVIASMQQQNLRVLFDVPNSKLGMARETCT 437
L F AF S +Q + +P+C + + GS LQV HV SPCSPFRP K SWEESVL+MQ+DD RL FLS+LVA +SV P+ASGR I+Q+PTYIVRA++GTPPQT L+AVD SNDAAW+PC+GC GC S F S KS ++KTLGC+ +QCKQV + TC + CSFNT+YGSS++AANLSQ++ LATDV+PGYTFGC+QKTTG SVPPQGLLGLGRGPLSLLSQTQ+LY+STFSYCLPSFKSLNFSGSLRLGPV QP R+K+T LL+NP RSSLYYVNL AI+VGR+IVDIP +ALAF+ T GAGTIIDSGTVFTRLVEPAY+AVRNEFRRR+GK +LGGFDTCYSVP +PTITFMF G+N+TLP+DN +IHS + SITCLAMAA+P+NVNSVLNVIA+MQQQN RVL DVPNS+LG+ARE CT
Sbjct: 4 LSFVAFSLCLLFFSLAQGLSNNPQCSEAKDQGSNLQVFHVYSPCSPFRPTKPMSWEESVLQMQADDQARLQFLSSLVAKKSVVPIASGRQIIQSPTYIVRAKIGTPPQTLLLAVDTSNDAAWVPCNGCVGCGSNVFNSAKSTTYKTLGCQTAQCKQVPN-PTCLGSTCSFNTSYGSSTLAANLSQETFTLATDVVPGYTFGCLQKTTGSSVPPQGLLGLGRGPLSLLSQTQNLYQSTFSYCLPSFKSLNFSGSLRLGPVGQPKRIKYTPLLKNPRRSSLYYVNLNAIRVGRRIVDIPPAALAFNPTTGAGTIIDSGTVFTRLVEPAYVAVRNEFRRRVGKYP-FQTLGGFDTCYSVPFVVPTITFMFSGMNVTLPEDNIVIHSTAGSITCLAMAAAPDNVNSVLNVIANMQQQNHRVLIDVPNSRLGVARERCT 435
| Match Name | Stats | Description |
|---|---|---|
| A0A834Z2A2 | E-Value: 0.000e+0, PID: 69.11 | (Uncharacterized protein {ECO:0000313|EMBL:KAF8398... [more] |
| A0A834YXX1 | E-Value: 0.000e+0, PID: 71.26 | (Uncharacterized protein {ECO:0000313|EMBL:KAF8395... [more] |
| A0A5J4ZK15 | E-Value: 0.000e+0, PID: 70.78 | Peptidase A1 domain-containing protein {ECO:000025... [more] |
| B9RG92 | E-Value: 0.000e+0, PID: 70.09 | (Aspartic proteinase nepenthesin-1, putative {ECO:... [more] |
| A0A2N9FYV8 | E-Value: 0.000e+0, PID: 73.66 | Peptidase A1 domain-containing protein {ECO:000025... [more] |
| A0A5J5B454 | E-Value: 0.000e+0, PID: 74.70 | Peptidase A1 domain-containing protein {ECO:000025... [more] |
| A0A2I4GZU9 | E-Value: 0.000e+0, PID: 72.52 | (aspartyl protease AED3-like {ECO:0000313|RefSeq:X... [more] |
| T2DNA5 | E-Value: 0.000e+0, PID: 69.64 | (Aspartic proteinase nepenthesin-1-like protein {E... [more] |
| A0A5B6YZA6 | E-Value: 0.000e+0, PID: 72.06 | Peptidase A1 domain-containing protein {ECO:000025... [more] |
| A0A6P5SSQ4 | E-Value: 0.000e+0, PID: 71.43 | (aspartyl protease AED3-like {ECO:0000313|RefSeq:X... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |